Query 040221
Match_columns 142
No_of_seqs 121 out of 1267
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 99.9 5.1E-22 1.8E-26 146.3 10.7 106 15-142 79-187 (212)
2 4eby_A Chitin elicitor recepto 99.9 2.3E-22 7.8E-27 148.2 6.6 103 16-142 11-126 (212)
3 2djp_A Hypothetical protein SB 99.6 7E-16 2.4E-20 96.3 4.1 47 96-142 14-61 (77)
4 1e0g_A Membrane-bound lytic mu 99.6 6.5E-15 2.2E-19 83.6 5.4 45 97-142 2-46 (48)
5 2gu1_A Zinc peptidase; alpha/b 99.5 1.5E-14 5.2E-19 113.9 3.6 122 15-142 8-151 (361)
6 2l9y_A CVNH-LYSM lectin; carbo 99.5 8.6E-14 2.9E-18 98.9 6.1 48 95-142 60-108 (167)
7 2l9y_A CVNH-LYSM lectin; carbo 99.4 7.9E-16 2.7E-20 109.4 -4.7 95 11-126 59-154 (167)
8 1e0g_A Membrane-bound lytic mu 98.8 2.1E-09 7.1E-14 60.4 3.4 45 15-66 3-47 (48)
9 2gu1_A Zinc peptidase; alpha/b 98.8 1.4E-09 5E-14 85.5 3.2 48 95-142 5-57 (361)
10 2djp_A Hypothetical protein SB 98.8 2.6E-09 9E-14 66.1 3.5 50 13-68 14-64 (77)
11 4a1k_A Putative L, D-transpept 97.9 5.9E-06 2E-10 58.2 3.6 47 15-67 3-49 (165)
12 3slu_A M23 peptidase domain pr 97.6 9.1E-05 3.1E-09 58.4 6.4 48 94-141 11-63 (371)
13 3slu_A M23 peptidase domain pr 97.1 0.0021 7.1E-08 50.6 8.0 120 16-141 16-158 (371)
14 2glo_A Brinker CG9653-PA; prot 87.8 0.53 1.8E-05 26.4 3.1 24 103-126 19-46 (59)
15 2elh_A CG11849-PA, LD40883P; s 85.2 0.82 2.8E-05 27.8 3.2 24 103-126 36-59 (87)
16 1tc3_C Protein (TC3 transposas 84.9 1.1 3.8E-05 23.2 3.3 24 103-126 19-42 (51)
17 2jn6_A Protein CGL2762, transp 84.3 0.77 2.6E-05 28.3 2.8 22 105-126 23-44 (97)
18 2jrt_A Uncharacterized protein 83.4 1.1 3.9E-05 28.1 3.3 26 101-126 45-70 (95)
19 1jko_C HIN recombinase, DNA-in 81.6 0.93 3.2E-05 23.9 2.2 23 103-125 19-41 (52)
20 2rn7_A IS629 ORFA; helix, all 75.2 1.1 3.8E-05 28.1 1.4 21 106-126 31-51 (108)
21 2x48_A CAG38821; archeal virus 74.2 3.7 0.00013 22.1 3.3 23 103-125 29-51 (55)
22 2lfc_A Fumarate reductase, fla 73.8 2.2 7.5E-05 29.0 2.7 25 102-126 92-120 (160)
23 1pdn_C Protein (PRD paired); p 65.8 6 0.00021 24.7 3.3 23 103-125 31-53 (128)
24 1rr7_A Middle operon regulator 64.8 5.8 0.0002 26.1 3.2 21 105-125 92-112 (129)
25 1k78_A Paired box protein PAX5 62.2 7.3 0.00025 25.5 3.3 23 103-125 46-68 (149)
26 2jrt_A Uncharacterized protein 60.9 8.7 0.0003 23.9 3.3 25 20-50 47-71 (95)
27 1neq_A DNA-binding protein NER 60.0 8.5 0.00029 22.6 3.0 23 103-125 20-42 (74)
28 1u78_A TC3 transposase, transp 59.8 7.8 0.00027 24.8 3.1 24 103-126 20-43 (141)
29 2p7v_B Sigma-70, RNA polymeras 56.4 13 0.00046 20.8 3.4 22 104-125 24-45 (68)
30 2o8x_A Probable RNA polymerase 56.2 12 0.00042 20.7 3.2 23 103-125 29-51 (70)
31 2oa4_A SIR5; structure, struct 55.2 8.1 0.00028 24.5 2.4 27 100-126 45-71 (101)
32 2cob_A LCOR protein; MLR2, KIA 53.7 10 0.00034 22.4 2.5 22 102-123 26-48 (70)
33 2ao9_A Phage protein; structur 52.1 15 0.0005 25.1 3.5 24 104-127 47-70 (155)
34 1ku3_A Sigma factor SIGA; heli 51.9 18 0.00061 20.6 3.5 22 104-125 29-50 (73)
35 2k27_A Paired box protein PAX- 51.4 9.8 0.00033 25.2 2.5 24 103-126 39-62 (159)
36 2elh_A CG11849-PA, LD40883P; s 48.9 16 0.00055 21.8 3.0 23 21-49 37-59 (87)
37 1xn7_A Hypothetical protein YH 48.8 15 0.0005 21.9 2.8 19 106-124 17-35 (78)
38 1fse_A GERE; helix-turn-helix 48.6 19 0.00067 20.1 3.3 23 103-125 24-46 (74)
39 2jn6_A Protein CGL2762, transp 48.4 13 0.00044 22.4 2.6 22 22-49 23-44 (97)
40 1j9i_A GPNU1 DBD;, terminase s 47.9 15 0.00053 20.7 2.7 20 107-126 4-23 (68)
41 3bd1_A CRO protein; transcript 47.8 18 0.00061 20.8 3.1 22 103-125 10-31 (79)
42 2kfs_A Conserved hypothetical 47.8 11 0.00037 25.6 2.2 36 107-142 33-69 (148)
43 4abx_A DNA repair protein RECN 47.7 14 0.00047 25.4 2.9 20 106-125 132-151 (175)
44 4dyq_A Gene 1 protein; GP1, oc 46.5 8.2 0.00028 25.5 1.5 25 102-126 25-50 (140)
45 1tty_A Sigma-A, RNA polymerase 46.3 23 0.0008 20.9 3.5 22 104-125 37-58 (87)
46 2pij_A Prophage PFL 6 CRO; tra 44.5 21 0.00072 19.6 2.9 37 102-139 11-51 (67)
47 2jpc_A SSRB; DNA binding prote 43.2 19 0.00065 19.4 2.6 23 103-125 11-33 (61)
48 2k02_A Ferrous iron transport 42.3 19 0.00064 22.0 2.6 20 106-125 17-36 (87)
49 1x3u_A Transcriptional regulat 42.3 27 0.00092 19.8 3.3 23 103-125 29-51 (79)
50 1je8_A Nitrate/nitrite respons 42.0 27 0.00094 20.4 3.3 23 103-125 34-56 (82)
51 1hlv_A CENP-B, major centromer 41.2 16 0.00056 23.1 2.3 23 103-125 22-45 (131)
52 3hug_A RNA polymerase sigma fa 40.6 30 0.001 20.6 3.3 23 103-125 51-73 (92)
53 3frw_A Putative Trp repressor 40.0 31 0.0011 22.0 3.4 26 102-127 55-80 (107)
54 2xi8_A Putative transcription 39.9 29 0.001 18.5 3.1 23 103-125 12-34 (66)
55 2zp2_A Kinase A inhibitor; KIP 39.2 24 0.00083 23.6 2.9 49 12-66 4-57 (141)
56 2jml_A DNA binding domain/tran 39.2 18 0.00063 21.2 2.1 20 107-126 7-26 (81)
57 3bs3_A Putative DNA-binding pr 36.9 35 0.0012 18.9 3.1 24 102-125 20-43 (76)
58 3b7h_A Prophage LP1 protein 11 36.4 35 0.0012 19.0 3.1 23 103-125 18-40 (78)
59 2ek5_A Predicted transcription 36.2 33 0.0011 22.1 3.2 24 102-125 22-48 (129)
60 1zug_A Phage 434 CRO protein; 35.9 36 0.0012 18.5 3.1 23 103-125 14-36 (71)
61 2l0k_A Stage III sporulation p 35.5 33 0.0011 21.1 2.9 21 105-125 20-40 (93)
62 3tqn_A Transcriptional regulat 35.1 40 0.0014 21.0 3.4 24 102-125 27-53 (113)
63 3qq6_A HTH-type transcriptiona 35.0 38 0.0013 19.3 3.1 27 100-126 18-44 (78)
64 2r1j_L Repressor protein C2; p 34.7 42 0.0015 17.9 3.2 23 103-125 16-38 (68)
65 1r8d_A Transcription activator 34.6 33 0.0011 21.3 2.9 20 107-126 4-23 (109)
66 1r69_A Repressor protein CI; g 34.6 40 0.0014 18.2 3.1 23 103-125 12-34 (69)
67 2dgz_A Werner syndrome protein 34.1 6.5 0.00022 25.3 -0.6 34 99-132 43-76 (113)
68 1y7y_A C.AHDI; helix-turn-heli 34.0 41 0.0014 18.4 3.1 23 103-125 24-46 (74)
69 2b5a_A C.BCLI; helix-turn-heli 34.0 41 0.0014 18.6 3.1 23 103-125 21-43 (77)
70 2hin_A GP39, repressor protein 33.8 39 0.0013 19.7 2.9 18 108-125 13-30 (71)
71 1s7o_A Hypothetical UPF0122 pr 33.8 42 0.0014 21.1 3.4 23 103-125 36-58 (113)
72 2lfc_A Fumarate reductase, fla 33.4 29 0.001 23.2 2.7 26 20-51 93-122 (160)
73 3c57_A Two component transcrip 33.4 45 0.0015 20.0 3.3 23 103-125 40-62 (95)
74 1gdt_A GD resolvase, protein ( 33.0 39 0.0013 22.8 3.3 23 103-125 156-178 (183)
75 2vz4_A Tipal, HTH-type transcr 32.9 37 0.0013 21.0 3.0 20 107-126 3-22 (108)
76 2kpj_A SOS-response transcript 32.7 48 0.0016 19.5 3.4 23 103-125 20-42 (94)
77 1nd9_A Translation initiation 32.6 26 0.00088 18.1 1.9 20 107-126 4-23 (49)
78 1uxc_A FRUR (1-57), fructose r 32.6 40 0.0014 19.1 2.8 19 24-48 2-20 (65)
79 1b0n_B Protein (SINI protein); 32.4 30 0.001 19.4 2.1 17 110-126 20-36 (57)
80 3omt_A Uncharacterized protein 31.8 37 0.0013 18.8 2.6 25 101-125 17-41 (73)
81 3mzy_A RNA polymerase sigma-H 31.8 42 0.0014 21.4 3.2 24 102-125 121-144 (164)
82 2a6c_A Helix-turn-helix motif; 31.6 53 0.0018 18.9 3.4 24 102-125 28-51 (83)
83 2k5e_A Uncharacterized protein 31.2 40 0.0014 19.6 2.7 23 104-126 39-62 (73)
84 2k9q_A Uncharacterized protein 31.0 38 0.0013 19.1 2.6 21 105-125 15-35 (77)
85 3i71_A Ethanolamine utilizatio 30.6 59 0.002 18.5 3.1 22 102-123 15-36 (68)
86 3neu_A LIN1836 protein; struct 30.6 49 0.0017 21.0 3.3 23 103-125 32-57 (125)
87 3kor_A Possible Trp repressor; 30.6 51 0.0017 21.4 3.3 25 102-126 72-96 (119)
88 1rzs_A Antirepressor, regulato 30.3 39 0.0013 18.6 2.4 21 106-126 11-31 (61)
89 1adr_A P22 C2 repressor; trans 30.1 55 0.0019 18.0 3.2 23 103-125 16-38 (76)
90 3t76_A VANU, transcriptional r 29.5 52 0.0018 19.7 3.1 26 101-126 33-58 (88)
91 1xsv_A Hypothetical UPF0122 pr 29.5 55 0.0019 20.5 3.4 22 103-124 39-60 (113)
92 2k53_A A3DK08 protein; NESG, C 29.5 64 0.0022 18.9 3.4 25 20-50 36-61 (76)
93 2r0q_C Putative transposon TN5 29.4 48 0.0016 22.9 3.3 24 103-126 173-196 (209)
94 2b0l_A GTP-sensing transcripti 29.0 45 0.0015 20.6 2.8 22 103-124 38-62 (102)
95 3s8q_A R-M controller protein; 28.8 55 0.0019 18.5 3.1 23 103-125 22-44 (82)
96 2ef8_A C.ECOT38IS, putative tr 28.6 56 0.0019 18.4 3.1 23 103-125 21-43 (84)
97 2heo_A Z-DNA binding protein 1 28.3 49 0.0017 18.6 2.7 20 106-125 26-45 (67)
98 3t72_q RNA polymerase sigma fa 28.3 57 0.0019 20.1 3.2 22 104-125 38-59 (99)
99 4ham_A LMO2241 protein; struct 28.0 57 0.0019 20.9 3.3 24 102-125 32-58 (134)
100 1z4h_A TORI, TOR inhibition pr 27.8 56 0.0019 18.2 2.9 33 107-139 12-46 (66)
101 3kz3_A Repressor protein CI; f 27.6 46 0.0016 18.9 2.6 25 103-127 23-48 (80)
102 1sfu_A 34L protein; protein/Z- 27.4 59 0.002 19.3 2.9 18 107-124 31-48 (75)
103 3ewt_E Tumor necrosis factor r 27.4 35 0.0012 15.8 1.5 22 107-128 3-25 (25)
104 2wiu_B HTH-type transcriptiona 27.3 60 0.0021 18.5 3.1 23 103-125 23-45 (88)
105 2rnj_A Response regulator prot 27.2 40 0.0014 19.9 2.3 23 103-125 42-64 (91)
106 2l8n_A Transcriptional repress 26.6 56 0.0019 18.5 2.8 21 23-49 10-30 (67)
107 3lsg_A Two-component response 26.1 58 0.002 19.5 2.9 20 106-125 20-39 (103)
108 3mn2_A Probable ARAC family tr 25.9 59 0.002 19.6 3.0 20 106-125 19-38 (108)
109 3f6w_A XRE-family like protein 25.7 53 0.0018 18.6 2.6 23 103-125 25-47 (83)
110 1v4r_A Transcriptional repress 25.4 40 0.0014 20.4 2.1 28 103-130 30-61 (102)
111 1x57_A Endothelial differentia 25.2 78 0.0027 18.3 3.4 24 102-125 23-46 (91)
112 2ewt_A BLDD, putative DNA-bind 25.2 71 0.0024 17.3 3.0 23 103-125 19-43 (71)
113 2jt1_A PEFI protein; solution 24.8 57 0.0019 19.2 2.6 17 107-123 26-42 (77)
114 3qwg_A ESX-1 secretion-associa 24.7 26 0.00087 22.6 1.1 18 106-123 60-77 (123)
115 3oou_A LIN2118 protein; protei 24.7 62 0.0021 19.6 2.9 20 106-125 22-41 (108)
116 3gpv_A Transcriptional regulat 24.5 59 0.002 21.4 2.9 20 107-126 18-37 (148)
117 3ulq_B Transcriptional regulat 24.4 81 0.0028 18.8 3.3 24 102-125 41-64 (90)
118 3oio_A Transcriptional regulat 23.9 65 0.0022 19.7 2.9 20 106-125 24-43 (113)
119 2ga1_A Protein of unknown func 23.8 58 0.002 20.6 2.6 23 102-124 61-84 (106)
120 1lmb_3 Protein (lambda repress 23.8 59 0.002 18.8 2.6 23 103-125 28-50 (92)
121 2wlb_A ETP1-FD, electron trans 23.6 80 0.0027 19.1 3.3 21 98-118 16-36 (103)
122 1frr_A Ferredoxin I; electron 23.6 83 0.0028 18.6 3.3 22 98-119 13-34 (95)
123 2bt6_A Adrenodoxin 1; rutheniu 23.4 74 0.0025 19.5 3.1 23 98-120 19-41 (108)
124 3r1f_A ESX-1 secretion-associa 23.4 28 0.00097 22.7 1.1 18 106-123 62-79 (135)
125 3fmy_A HTH-type transcriptiona 23.2 49 0.0017 18.6 2.0 25 102-126 21-45 (73)
126 1frd_A Heterocyst [2Fe-2S] fer 22.8 78 0.0027 18.9 3.1 23 97-119 15-37 (98)
127 1b0n_A Protein (SINR protein); 22.7 78 0.0027 18.9 3.1 22 104-125 13-34 (111)
128 2l49_A C protein; P2 bacteriop 22.6 82 0.0028 18.4 3.1 24 103-126 15-38 (99)
129 2phc_B Uncharacterized protein 22.5 63 0.0022 23.2 2.9 33 12-50 87-119 (225)
130 2ppx_A AGR_C_3184P, uncharacte 22.5 81 0.0028 18.7 3.1 25 101-125 39-63 (99)
131 1j1v_A Chromosomal replication 22.5 62 0.0021 19.7 2.5 18 107-124 6-23 (94)
132 1p4w_A RCSB; solution structur 22.3 86 0.0029 19.1 3.2 23 103-125 47-69 (99)
133 1ufm_A COP9 complex subunit 4; 22.1 70 0.0024 19.1 2.7 19 107-125 32-50 (84)
134 2zhg_A Redox-sensitive transcr 21.9 71 0.0024 21.3 2.9 20 107-126 13-32 (154)
135 3uj3_X DNA-invertase; helix-tu 21.8 19 0.00066 24.7 0.0 25 102-126 155-179 (193)
136 2rrd_A BLM HRDC domain, HRDC d 21.8 13 0.00044 23.3 -0.8 32 99-130 43-74 (101)
137 1jq4_A Methane monooxygenase c 21.8 89 0.003 18.7 3.2 23 97-119 16-38 (98)
138 2k9s_A Arabinose operon regula 21.5 77 0.0026 19.1 2.9 20 106-125 21-40 (107)
139 2ofy_A Putative XRE-family tra 21.5 85 0.0029 17.8 3.0 19 107-125 29-47 (86)
140 2ict_A Antitoxin HIGA; helix-t 21.4 95 0.0033 18.0 3.2 23 103-125 19-41 (94)
141 1xlq_A Putidaredoxin, PDX; [2F 21.3 84 0.0029 19.1 3.0 21 98-118 13-33 (106)
142 1qbj_A Protein (double-strande 21.2 88 0.003 18.5 3.0 20 106-125 28-47 (81)
143 3ggy_A Increased sodium tolera 21.1 61 0.0021 22.8 2.5 17 107-123 172-188 (193)
144 2jvl_A TRMBF1; coactivator, he 21.1 1E+02 0.0034 18.8 3.4 24 103-126 47-70 (107)
145 1y6u_A XIS, excisionase from t 21.1 34 0.0012 19.8 1.0 35 107-141 18-55 (70)
146 2htj_A P fimbrial regulatory p 21.1 86 0.0029 17.9 2.9 19 106-124 15-33 (81)
147 2kv2_A Bloom syndrome protein; 21.1 13 0.00043 22.4 -1.0 31 100-130 29-59 (85)
148 3eus_A DNA-binding protein; st 20.9 93 0.0032 17.9 3.1 26 102-127 24-50 (86)
149 3by6_A Predicted transcription 20.7 96 0.0033 19.7 3.3 23 103-125 30-55 (126)
150 3mkl_A HTH-type transcriptiona 20.7 82 0.0028 19.4 2.9 20 106-125 24-43 (120)
151 3ah7_A [2Fe-2S]ferredoxin; [2F 20.4 1E+02 0.0035 18.9 3.4 23 97-119 16-38 (113)
152 3mlf_A Transcriptional regulat 20.2 91 0.0031 19.1 3.1 26 100-125 31-56 (111)
153 2wus_R RODZ, putative uncharac 20.2 1E+02 0.0035 19.2 3.3 23 103-125 18-40 (112)
154 3vk0_A NHTF, transcriptional r 20.2 94 0.0032 19.0 3.1 25 101-125 30-54 (114)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.87 E-value=5.1e-22 Score=146.32 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=86.3
Q ss_pred ccCCCCCCCCHHHHH-HHhcccccCC--CCHHHHHHhCCCCCCCCCCCCcEEecCCCCCCCCCCCCCccCCCCcccCCCC
Q 040221 15 AENDGSGDGREAAVA-KTAGFVVFSG--IAISILKALNPLNKNRNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEKSE 91 (142)
Q Consensus 15 ~~~~~~~~~~~~~iA-~~~~~~~~~g--vs~~~L~~~N~l~~~~l~~Gq~l~vp~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (142)
..|+++.|||++.|| ++| + +++++|+++|++..+.|.+||.|.||..+.+... ...
T Consensus 79 ~~Y~V~~GDTL~~IA~~~y------~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP~~~~~~~~---------------~~~ 137 (212)
T 4eby_A 79 FSYSVRQEDTYERVAISNY------ANLTTMESLQARNPFPATNIPLSATLNVLVNCSCGDE---------------SVS 137 (212)
T ss_dssp EEEECCTTCCHHHHHHTTT------TTSSCHHHHHHHCCSCTTCCCTTCEEEEEEECCCCCT---------------TTC
T ss_pred eEEEecCCCcHHHHHHHhc------CCCCCHHHHHHhcCCCcccCCCCCEEEEcCCCcCCCc---------------ccc
Confidence 568899999999999 799 9 9999999999977789999999999976532110 000
Q ss_pred CCCCCceEEEecCCCcHHHHHHHhCCCHHHHHHHhCCCCCCCCCCCEEecC
Q 040221 92 PEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142 (142)
Q Consensus 92 ~~~~~~~~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~~~~l~~Gq~L~IP 142 (142)
.......+|+|++|||||.||++||+++++|++||++.+..+..|+ |.||
T Consensus 138 ~~~~~~~~Y~V~~GDTL~~IA~~fgvsv~~L~~~N~~~~~~~~~g~-l~IP 187 (212)
T 4eby_A 138 KDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNFNSGNGI-VYVP 187 (212)
T ss_dssp SSCCCEEEEECCTTCCHHHHHHHHTSCHHHHHHHSTTCCTTSCSSE-EEEE
T ss_pred cCCCCeEEEEECCCCcHHHHHHHHCcCHHHHHHhcCCCccCCCCCE-EEec
Confidence 1123347899999999999999999999999999988766566665 8887
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.86 E-value=2.3e-22 Score=148.21 Aligned_cols=103 Identities=10% Similarity=0.075 Sum_probs=87.4
Q ss_pred cCCCCCCCCHHHHHHHhcccccCCCCH--------HHHHHhC-CCC-CCCCCCCCcEEecCCCCCCCCCCCCCccCCCCc
Q 040221 16 ENDGSGDGREAAVAKTAGFVVFSGIAI--------SILKALN-PLN-KNRNETTQPQPIAESTQPIQPPPQQPIVTKPSI 85 (142)
Q Consensus 16 ~~~~~~~~~~~~iA~~~~~~~~~gvs~--------~~L~~~N-~l~-~~~l~~Gq~l~vp~~~~~~~~~~~~~~~~~~~~ 85 (142)
.|.++.|||++.||++| |+++ ++|+++| ++. .+.|.+||.|+||..+.+..
T Consensus 11 ~Y~V~~GDTL~~IA~~~------~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~~------------- 71 (212)
T 4eby_A 11 SYYLENGTTLSVINQNL------NSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQP------------- 71 (212)
T ss_dssp EEECCTTCCHHHHHHHT------CCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEET-------------
T ss_pred EEEeCCCCCHHHHHHHH------CCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEeccccccC-------------
Confidence 57888999999999999 9998 9999999 885 47899999999997642200
Q ss_pred ccCCCCCCCCCceEEEecCCCcHHHHH-HHhC--CCHHHHHHHhCCCCCCCCCCCEEecC
Q 040221 86 CTEKSEPEPASCRTVEIVRGDTLWGLS-RKYG--VSIDAIKEANGLSGDTIYAGKKLIIP 142 (142)
Q Consensus 86 ~~~~~~~~~~~~~~y~V~~GDTl~~IA-~ryg--vs~~~L~~~N~l~~~~l~~Gq~L~IP 142 (142)
........+|+|++|||||.|| ++|+ +++++|++||++..+.|++||+|.||
T Consensus 72 -----~~~~~~~~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~~~~l~~Gq~L~IP 126 (212)
T 4eby_A 72 -----GDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFPATNIPLSATLNVL 126 (212)
T ss_dssp -----TTEEEEEEEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSCTTCCCTTCEEEEE
T ss_pred -----CccccCceEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCCcccCCCCCEEEEc
Confidence 0001235689999999999999 7999 99999999999777899999999997
No 3
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7e-16 Score=96.29 Aligned_cols=47 Identities=45% Similarity=0.647 Sum_probs=44.3
Q ss_pred CceEEEecCCCcHHHHHHHhCCCHHHHHHHhCCCC-CCCCCCCEEecC
Q 040221 96 SCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSG-DTIYAGKKLIIP 142 (142)
Q Consensus 96 ~~~~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~~-~~l~~Gq~L~IP 142 (142)
.+..|+|++|||||.||++|++++++|+++|++.. +.|++||+|+||
T Consensus 14 ~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP 61 (77)
T 2djp_A 14 RRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIP 61 (77)
T ss_dssp EEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEEC
Confidence 46689999999999999999999999999999986 899999999997
No 4
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.55 E-value=6.5e-15 Score=83.55 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=42.2
Q ss_pred ceEEEecCCCcHHHHHHHhCCCHHHHHHHhCCCCCCCCCCCEEecC
Q 040221 97 CRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142 (142)
Q Consensus 97 ~~~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~~~~l~~Gq~L~IP 142 (142)
+.+|+|++|||||+||++||+++++|+++|+ ..+.|++||.|.||
T Consensus 2 ~~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~-~~~~l~~G~~l~ip 46 (48)
T 1e0g_A 2 SITYRVRKGDSLSSIAKRHGVNIKDVMRWNS-DTANLQPGDKLTLF 46 (48)
T ss_dssp CCEEEECTTCCHHHHHHHHTCCHHHHHHHCS-CGGGCCTTEEEECC
T ss_pred CEEEEEcCCCcHHHHHHHHCcCHHHHHHhCC-CCCcCCcCCEEEEe
Confidence 4589999999999999999999999999999 55899999999998
No 5
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.47 E-value=1.5e-14 Score=113.94 Aligned_cols=122 Identities=9% Similarity=0.011 Sum_probs=84.2
Q ss_pred ccCCCCCCCCHHHHHHHhcccccCCCCHHHHHHhCCCC-----CCCCCCCCcEEecCCCCCCC--CCCCCCcc-------
Q 040221 15 AENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPLN-----KNRNETTQPQPIAESTQPIQ--PPPQQPIV------- 80 (142)
Q Consensus 15 ~~~~~~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~l~-----~~~l~~Gq~l~vp~~~~~~~--~~~~~~~~------- 80 (142)
..++++.|||++.||++| |++.++|.++|++. .+.|++||.|.||....... ..+.....
T Consensus 8 ~~~~Vk~GDTL~~Ia~r~------gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~ 81 (361)
T 2gu1_A 8 IHYMVKVGDTLSGIFAQL------GVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTR 81 (361)
T ss_dssp EEEECCTTCCHHHHHHHT------TCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEE
T ss_pred eEEEECCCCcHHHHHHHc------CCCHHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEe
Confidence 467899999999999999 99999999999874 26899999999996432100 00000000
Q ss_pred CCCCcccCC--CCCCCCCceEEEecCCCcHHHHHHHhCCCHHHHHHHhCCCC------CCCCCCCEEecC
Q 040221 81 TKPSICTEK--SEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSG------DTIYAGKKLIIP 142 (142)
Q Consensus 81 ~~~~~~~~~--~~~~~~~~~~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~~------~~l~~Gq~L~IP 142 (142)
.....+... ..........|.++.|||||.||++||++...|++||++.. ..|++||+|.|+
T Consensus 82 ~~~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~ 151 (361)
T 2gu1_A 82 ENDGSFSYDFQEISGEWREILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDIL 151 (361)
T ss_dssp CTTSCEEEEEEECCCEEEEEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEE
T ss_pred cCCCcceeeecccCceEEEEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence 000000000 00111234578999999999999999999999999997643 469999999874
No 6
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.45 E-value=8.6e-14 Score=98.86 Aligned_cols=48 Identities=31% Similarity=0.614 Sum_probs=45.5
Q ss_pred CCceEEEecCCCcHHHHHHHhCCCHHHHHHHhCCCC-CCCCCCCEEecC
Q 040221 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSG-DTIYAGKKLIIP 142 (142)
Q Consensus 95 ~~~~~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~~-~~l~~Gq~L~IP 142 (142)
....+|+|++|||||.||++|++++.+|++||+|.+ +.|++||+|.||
T Consensus 60 ~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip 108 (167)
T 2l9y_A 60 GGTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVP 108 (167)
T ss_dssp CSCEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEES
T ss_pred CCCceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEc
Confidence 456789999999999999999999999999999999 999999999997
No 7
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.45 E-value=7.9e-16 Score=109.40 Aligned_cols=95 Identities=7% Similarity=-0.132 Sum_probs=75.5
Q ss_pred CCCCccCCCCCCCCHHHHHHHhcccccCCCCHHHHHHhCCCCC-CCCCCCCcEEecCCCCCCCCCCCCCccCCCCcccCC
Q 040221 11 PRVPAENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPLNK-NRNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEK 89 (142)
Q Consensus 11 ~~~p~~~~~~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~l~~-~~l~~Gq~l~vp~~~~~~~~~~~~~~~~~~~~~~~~ 89 (142)
...+..|+++.|||++.||++| |+++.+|+++|++.+ +.|++||.|.||....... ..+
T Consensus 59 ~~~~~~y~V~~GDTL~~IA~~~------~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~-~~~------------- 118 (167)
T 2l9y_A 59 GGGTATVTVQQGDTLRDIGRRF------DCDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGG-GAG------------- 118 (167)
T ss_dssp CCSCEEEEECTTCCHHHHHHHT------TCCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSS-SSC-------------
T ss_pred CCCCceEEECCCCcHHHHHHHc------CCCHHHHHHHcCCCCcccccCCCEEEEcCCCCccc-ccc-------------
Confidence 5568899999999999999999 999999999999987 8999999999997542200 000
Q ss_pred CCCCCCCceEEEecCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 90 SEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 90 ~~~~~~~~~~y~V~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
.........|.|++||+|+.||++||.++..+..+|
T Consensus 119 -~~~~~~~~~~~v~~GdtL~aIA~r~G~~v~s~i~Ln 154 (167)
T 2l9y_A 119 -NFWDSARDVRLVDGGKVLEAELRYSGGWNRSRIYLD 154 (167)
T ss_dssp -CGGGGEEEEEEETTTTEEEEEEEETTEEEEEEECGG
T ss_pred -ccccccceEEEeCCcCChHHHHHHcCCceEEEEEcc
Confidence 000122457999999999999999998877777666
No 8
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=98.84 E-value=2.1e-09 Score=60.38 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=41.1
Q ss_pred ccCCCCCCCCHHHHHHHhcccccCCCCHHHHHHhCCCCCCCCCCCCcEEecC
Q 040221 15 AENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPLNKNRNETTQPQPIAE 66 (142)
Q Consensus 15 ~~~~~~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~l~~~~l~~Gq~l~vp~ 66 (142)
..|.+..|||++.||++| |+++.+|+++|+ ..+.|.+||.|.||.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~------~~~~~~l~~~N~-~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRH------GVNIKDVMRWNS-DTANLQPGDKLTLFV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHHH------TCCHHHHHHHCS-CGGGCCTTEEEECCC
T ss_pred EEEEEcCCCcHHHHHHHH------CcCHHHHHHhCC-CCCcCCcCCEEEEec
Confidence 457788999999999999 999999999999 667899999999985
No 9
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.82 E-value=1.4e-09 Score=85.47 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=42.4
Q ss_pred CCceEEEecCCCcHHHHHHHhCCCHHHHHHHhCCC-----CCCCCCCCEEecC
Q 040221 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLS-----GDTIYAGKKLIIP 142 (142)
Q Consensus 95 ~~~~~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~-----~~~l~~Gq~L~IP 142 (142)
..|..|+|++||||+.|+++||+++++|++||++. .+.|++||.|.||
T Consensus 5 ~~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~ 57 (361)
T 2gu1_A 5 PKRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELM 57 (361)
T ss_dssp --CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEE
Confidence 46889999999999999999999999999999764 2689999999886
No 10
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=66.09 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=45.2
Q ss_pred CCccCCCCCCCCHHHHHHHhcccccCCCCHHHHHHhCCCCC-CCCCCCCcEEecCCC
Q 040221 13 VPAENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPLNK-NRNETTQPQPIAEST 68 (142)
Q Consensus 13 ~p~~~~~~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~l~~-~~l~~Gq~l~vp~~~ 68 (142)
.-..|.+..|||++.||++| ++++.+|+++|++.. +.|.+||.|+||...
T Consensus 14 ~~~~y~V~~GDTL~~IA~~~------~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~ 64 (77)
T 2djp_A 14 RRLEHQLEPGDTLAGLALKY------GVTMEQIKRANRLYTNDSIFLKKTLYIPILT 64 (77)
T ss_dssp EEEEECCCTTCCHHHHHHHH------TCCHHHHHHHHTCCCSSCGGGSSCEEEEEEC
T ss_pred CcEEEEECCCCcHHHHHHHH------CcCHHHHHHHcCCCCccccCCCCEEEECCCC
Confidence 34569999999999999999 999999999999975 789999999999764
No 11
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=97.94 E-value=5.9e-06 Score=58.17 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=41.7
Q ss_pred ccCCCCCCCCHHHHHHHhcccccCCCCHHHHHHhCCCCCCCCCCCCcEEecCC
Q 040221 15 AENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPLNKNRNETTQPQPIAES 67 (142)
Q Consensus 15 ~~~~~~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~l~~~~l~~Gq~l~vp~~ 67 (142)
..|++++|||+..||++| +++..+|+++|+..+..|.+|+.+.||..
T Consensus 3 ~~y~V~~GdtL~~IA~~f------~~g~~~l~~aNp~vd~~l~~g~~i~ip~~ 49 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADF------RISTAALLQANPSLQAGLTAGQSIVIPGL 49 (165)
T ss_dssp EEEECCTTCCHHHHHHHT------TCCHHHHHHHCGGGGGCCCTTCEEEETTC
T ss_pred EEEEECCCCCHHHHHHHh------CCCHHHHHHhCccCCCccCCCccccCccC
Confidence 357789999999999999 99999999999876666889999999853
No 12
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.65 E-value=9.1e-05 Score=58.37 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCCceEEEecCCCcHHHHHHHhCCCHHHHHHHhCCC----C-CCCCCCCEEec
Q 040221 94 PASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLS----G-DTIYAGKKLII 141 (142)
Q Consensus 94 ~~~~~~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~----~-~~l~~Gq~L~I 141 (142)
...|..|+|++||||..|-+++|++..++.+++... . ..|++||.|.+
T Consensus 11 ~~~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i 63 (371)
T 3slu_A 11 TAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHV 63 (371)
T ss_dssp CCEEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEE
T ss_pred CCceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEE
Confidence 467999999999999999999999999999997432 4 78999999875
No 13
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.07 E-value=0.0021 Score=50.60 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=74.6
Q ss_pred cCCCCCCCCHHHHHHHhcccccCCCCHHHHHHhCCCC-----CCCCCCCCcEEecCCCCCC--CCCCCCCc---------
Q 040221 16 ENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPLN-----KNRNETTQPQPIAESTQPI--QPPPQQPI--------- 79 (142)
Q Consensus 16 ~~~~~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~l~-----~~~l~~Gq~l~vp~~~~~~--~~~~~~~~--------- 79 (142)
+++.+.|||++.|-+++ |++..++.+++... ...|++||.+.+....... ...+....
T Consensus 16 ~~~V~~GDTL~~IL~r~------Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~~~~l~~l~~~~~~~~~~~~v~i 89 (371)
T 3slu_A 16 QEAVQPGDSLADVLARS------GMARDEIARITEKYGGEADLRHLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVAL 89 (371)
T ss_dssp EEECCTTCCHHHHHHHT------TCCHHHHHHHHTTC------CCBCSSSEEEEEECTTSCEEEEEEEECCTTEEEEEEE
T ss_pred EEEECCCCcHHHHHHHc------CCCHHHHHHHHHhccccCchhhCCCCCEEEEEECCCCCeEEEEEEecCCCceeEEEE
Confidence 57889999999999999 99999999887643 2689999999997643210 00000000
Q ss_pred cCCCCcccCCCCCCC--CCceEEEecCCCcHHHHHHHhCCCHHHHHHHhCC-----CCCCCCCCCEEec
Q 040221 80 VTKPSICTEKSEPEP--ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGL-----SGDTIYAGKKLII 141 (142)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~~y~V~~GDTl~~IA~rygvs~~~L~~~N~l-----~~~~l~~Gq~L~I 141 (142)
............... .....+...-.++||..+.+.|++...+++++++ .-..|++|+++.|
T Consensus 90 ~~~dg~f~~~~~~~~~~~~~~~~~g~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v 158 (371)
T 3slu_A 90 EKKGGIWRRSASEADMKVLPTLRSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRL 158 (371)
T ss_dssp EEETTEEEECCCGGGEEEEEEEEEEECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEE
T ss_pred EecCCeeEEEeeecccceeeeEEEEEEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEE
Confidence 000000000000000 0011123344789999999999999888888743 2245899999876
No 14
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=87.78 E-value=0.53 Score=26.44 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred cCCCc----HHHHHHHhCCCHHHHHHHh
Q 040221 103 VRGDT----LWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 103 ~~GDT----l~~IA~rygvs~~~L~~~N 126 (142)
..|.+ +..||++|||+...|..|=
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 45677 9999999999999999994
No 15
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=85.25 E-value=0.82 Score=27.82 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.6
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
..|.++..||++|||+...|.+|=
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999999999998883
No 16
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=84.85 E-value=1.1 Score=23.18 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.5
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
..|-+...||+.+|++...+..|=
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 578899999999999999998874
No 17
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=84.27 E-value=0.77 Score=28.30 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHh
Q 040221 105 GDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 105 GDTl~~IA~rygvs~~~L~~~N 126 (142)
|.++..||+.|||+...|.+|=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 7899999999999999999994
No 18
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=83.40 E-value=1.1 Score=28.12 Aligned_cols=26 Identities=15% Similarity=-0.074 Sum_probs=22.9
Q ss_pred EecCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 101 EIVRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 101 ~V~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
....+.++.++|++|+++..+|..|-
T Consensus 45 ~~~g~~s~~e~arry~Is~s~i~~W~ 70 (95)
T 2jrt_A 45 VIHGLITEREALDRYSLSEEEFALWR 70 (95)
T ss_dssp HHTTSSCHHHHHHHTTCCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 34567799999999999999999997
No 19
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=81.60 E-value=0.93 Score=23.87 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=21.1
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|-+...||+.+|++...+.+|
T Consensus 19 ~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 19 EKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 46789999999999999999987
No 20
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=75.22 E-value=1.1 Score=28.06 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=19.3
Q ss_pred CcHHHHHHHhCCCHHHHHHHh
Q 040221 106 DTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~N 126 (142)
.++..||++|||+...|..|=
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHH
Confidence 689999999999999999993
No 21
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=74.22 E-value=3.7 Score=22.12 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.6
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|-|...||+.+|++...+..+
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 47889999999999999998876
No 22
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=73.79 E-value=2.2 Score=28.98 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.2
Q ss_pred ecCCCcHHHHHHHhCCCHH----HHHHHh
Q 040221 102 IVRGDTLWGLSRKYGVSID----AIKEAN 126 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~----~L~~~N 126 (142)
+.++|||..+|+++|++.+ .+.++|
T Consensus 92 ~~kadTleeLA~~~gid~~~L~~TV~~yN 120 (160)
T 2lfc_A 92 VFVKGSLESAAEQAGIVVDELVQTVKNYQ 120 (160)
T ss_dssp SEECSSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eEecCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4678999999999999965 567788
No 23
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=65.76 E-value=6 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|.++..||++||++...+.+|
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999888777
No 24
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=64.79 E-value=5.8 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=19.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 040221 105 GDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 105 GDTl~~IA~rygvs~~~L~~~ 125 (142)
|.+...+|++||+|...|++.
T Consensus 92 G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 889999999999999888765
No 25
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=62.20 E-value=7.3 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=21.1
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|.++..||+.||++...+.+|
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw 68 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKI 68 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999998887
No 26
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=60.87 E-value=8.7 Score=23.93 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhcccccCCCCHHHHHHhCC
Q 040221 20 SGDGREAAVAKTAGFVVFSGIAISILKALNP 50 (142)
Q Consensus 20 ~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~ 50 (142)
.++.++.++|++| +|+.++|..|-.
T Consensus 47 ~g~~s~~e~arry------~Is~s~i~~W~r 71 (95)
T 2jrt_A 47 HGLITEREALDRY------SLSEEEFALWRS 71 (95)
T ss_dssp TTSSCHHHHHHHT------TCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHh------CCCHHHHHHHHH
Confidence 3567899999999 999999998875
No 27
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=59.99 E-value=8.5 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
+.|=|+..+|++.|++...|..+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57889999999999999999866
No 28
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=59.85 E-value=7.8 Score=24.77 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.7
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
..|.+...||+.||++...+.+|=
T Consensus 20 ~~G~s~~~ia~~lgis~~Tv~r~~ 43 (141)
T 1u78_A 20 LLNVSLHEMSRKISRSRHCIRVYL 43 (141)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999999998873
No 29
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.36 E-value=13 Score=20.80 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHH
Q 040221 104 RGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 104 ~GDTl~~IA~rygvs~~~L~~~ 125 (142)
.|-|+..||+.+|++...+...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 6889999999999998887664
No 30
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=56.21 E-value=12 Score=20.73 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=19.6
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-.|-+...||+.+|++...+..+
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~ 51 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999998887654
No 31
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=55.19 E-value=8.1 Score=24.49 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=23.3
Q ss_pred EEecCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 100 VEIVRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 100 y~V~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
+...-+-|+.+.|++|+++..+|.+|=
T Consensus 45 ~v~~g~lS~~EAa~ry~Is~~ei~~W~ 71 (101)
T 2oa4_A 45 GVIYGLITLAEAKQTYGLSDEEFNSWV 71 (101)
T ss_dssp HHHHTTCCHHHHHHTTCSSHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHH
Confidence 445667889999999999999999995
No 32
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=53.74 E-value=10 Score=22.45 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=19.5
Q ss_pred ecCC-CcHHHHHHHhCCCHHHHH
Q 040221 102 IVRG-DTLWGLSRKYGVSIDAIK 123 (142)
Q Consensus 102 V~~G-DTl~~IA~rygvs~~~L~ 123 (142)
|+.| -+....|+.|||+-..|.
T Consensus 26 Vr~g~mS~~~Aak~yGVP~sTL~ 48 (70)
T 2cob_A 26 VMSGKMSVSKAQSIYGIPHSTLE 48 (70)
T ss_dssp HHTTSSCHHHHHHHHTCCHHHHH
T ss_pred HHcCCccHHHHHHHhCCChHHHH
Confidence 5778 699999999999998887
No 33
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=52.05 E-value=15 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHhC
Q 040221 104 RGDTLWGLSRKYGVSIDAIKEANG 127 (142)
Q Consensus 104 ~GDTl~~IA~rygvs~~~L~~~N~ 127 (142)
.|-|+..||+..||+...|.+|-+
T Consensus 47 ~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 367999999999999999999964
No 34
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=51.94 E-value=18 Score=20.56 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=18.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHH
Q 040221 104 RGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 104 ~GDTl~~IA~rygvs~~~L~~~ 125 (142)
.|-|+..||+.+|++...+..+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~ 50 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQI 50 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 6789999999999998877653
No 35
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=51.43 E-value=9.8 Score=25.23 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=22.2
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
..|.+...||++||++...+.+|=
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl 62 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKIL 62 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999999999999995
No 36
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=48.85 E-value=16 Score=21.75 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHhcccccCCCCHHHHHHhC
Q 040221 21 GDGREAAVAKTAGFVVFSGIAISILKALN 49 (142)
Q Consensus 21 ~~~~~~~iA~~~~~~~~~gvs~~~L~~~N 49 (142)
+|.+...||++| ||+...|..|=
T Consensus 37 ~g~s~~~iA~~~------gIs~sTl~rW~ 59 (87)
T 2elh_A 37 DGESKASVARDI------GVPESTLRGWC 59 (87)
T ss_dssp HTCCHHHHHHHH------TCCHHHHHHHH
T ss_pred CCCCHHHHHHHH------CcCHHHHHHHH
Confidence 357889999999 99999998773
No 37
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=48.80 E-value=15 Score=21.91 Aligned_cols=19 Identities=11% Similarity=0.003 Sum_probs=15.8
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKE 124 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~ 124 (142)
=++.+||++|+++...|.+
T Consensus 17 vsv~eLa~~l~VS~~TIRr 35 (78)
T 1xn7_A 17 MEAAQISQTLNTPQPMINA 35 (78)
T ss_dssp BCHHHHHHHTTCCHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHH
Confidence 3788999999999877664
No 38
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.62 E-value=19 Score=20.07 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=19.4
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|-+...||+.+|++...+...
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~ 46 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNH 46 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 67889999999999998776543
No 39
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=48.42 E-value=13 Score=22.45 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.7
Q ss_pred CCCHHHHHHHhcccccCCCCHHHHHHhC
Q 040221 22 DGREAAVAKTAGFVVFSGIAISILKALN 49 (142)
Q Consensus 22 ~~~~~~iA~~~~~~~~~gvs~~~L~~~N 49 (142)
|.+...||+.| ||+...|..|=
T Consensus 23 g~s~~~ia~~~------gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDL------GINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHH------TSCHHHHHHHH
T ss_pred CChHHHHHHHH------CcCHHHHHHHH
Confidence 67899999999 99999998874
No 40
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=47.85 E-value=15 Score=20.73 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.9
Q ss_pred cHHHHHHHhCCCHHHHHHHh
Q 040221 107 TLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N 126 (142)
|...+|+.+|++...|.+|-
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~ 23 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQ 23 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 45689999999999999996
No 41
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=47.85 E-value=18 Score=20.76 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=19.0
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..| |...+|++.|++...|.+|
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~ 31 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNW 31 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHH
Confidence 457 8899999999999988887
No 42
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=47.81 E-value=11 Score=25.62 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=27.2
Q ss_pred cHHHHHHHhCCCHHHHHHHhCCCC-CCCCCCCEEecC
Q 040221 107 TLWGLSRKYGVSIDAIKEANGLSG-DTIYAGKKLIIP 142 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N~l~~-~~l~~Gq~L~IP 142 (142)
|+.++|+..|++...++++=+-.. -.++.|...+||
T Consensus 33 Tv~EVAe~LgVs~srV~~LIr~G~L~AVr~Gr~~rVP 69 (148)
T 2kfs_A 33 DLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIP 69 (148)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHTTSCCCEEETTEEEEE
T ss_pred cHHHHHHHhCCCHHHHHHHHHCCCceEEEECCEEEec
Confidence 788999999999999988853333 455567777765
No 43
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=47.73 E-value=14 Score=25.38 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.2
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
+.+..++++||+++.+|..|
T Consensus 132 ~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 132 SALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 46788999999999998876
No 44
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=46.48 E-value=8.2 Score=25.50 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=22.4
Q ss_pred ecCCCcHHHHHHHhCC-CHHHHHHHh
Q 040221 102 IVRGDTLWGLSRKYGV-SIDAIKEAN 126 (142)
Q Consensus 102 V~~GDTl~~IA~rygv-s~~~L~~~N 126 (142)
+..|.+|..|++.+|+ +...|.+|=
T Consensus 25 i~~G~sl~~i~~~~~~ps~~T~~~W~ 50 (140)
T 4dyq_A 25 LSSGESLLKVCKRPGMPDKSTVFRWL 50 (140)
T ss_dssp HHTTCCHHHHHTSTTCCCHHHHHHHH
T ss_pred HHCCCcHHHHHhcCCCCCHHHHHHHH
Confidence 5689999999999999 899999883
No 45
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=46.33 E-value=23 Score=20.92 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHH
Q 040221 104 RGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 104 ~GDTl~~IA~rygvs~~~L~~~ 125 (142)
.|-|+..||+.+|++...++.+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~ 58 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQI 58 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
Confidence 6789999999999998877654
No 46
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=44.50 E-value=21 Score=19.59 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=26.2
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHHh-CCCC-CC--CCCCCEE
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEAN-GLSG-DT--IYAGKKL 139 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~N-~l~~-~~--l~~Gq~L 139 (142)
.+.| +...+|++.|++...|-+|= +-.. .. -..|+.+
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~~~~~~~~l~~t~~G~~~ 51 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMVRAGRSIEITLYEDGRVE 51 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHHHTTCCEEEEECTTSCEE
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHHcCCCCCCeEEccCceEe
Confidence 3567 99999999999999988873 4333 22 3456554
No 47
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.21 E-value=19 Score=19.39 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=18.9
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-.|-+..+||+.+|++...+...
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~ 33 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETH 33 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 46888999999999998877643
No 48
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=42.28 E-value=19 Score=22.03 Aligned_cols=20 Identities=15% Similarity=-0.016 Sum_probs=16.3
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
=++.+||++|+++...|.+-
T Consensus 17 vsv~eLA~~l~VS~~TIRrD 36 (87)
T 2k02_A 17 MEAKQLSARLQTPQPLIDAM 36 (87)
T ss_dssp EEHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHH
Confidence 37889999999998777653
No 49
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=42.26 E-value=27 Score=19.80 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=19.6
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-.|-+...||+.+|++...+...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~ 51 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVH 51 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 47889999999999998877654
No 50
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=42.04 E-value=27 Score=20.41 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.9
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-.|-+..+||+++|++...+...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~ 56 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVH 56 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 58999999999999998877653
No 51
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=41.21 E-value=16 Score=23.11 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=18.4
Q ss_pred cCCCcHH-HHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLW-GLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~-~IA~rygvs~~~L~~~ 125 (142)
..|.+.. .||+.||++...|..|
T Consensus 22 ~~g~~~~~~~A~~~gvs~stl~~~ 45 (131)
T 1hlv_A 22 ENPDLRKGEIARRFNIPPSTLSTI 45 (131)
T ss_dssp HCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCcHHHHHHHhCCCHHHHHHH
Confidence 4566554 8999999999888877
No 52
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.59 E-value=30 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.4
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-.|-+...||+.+|++...++..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~ 73 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSR 73 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999998877653
No 53
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=39.99 E-value=31 Score=22.01 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.7
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHHhC
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEANG 127 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~N~ 127 (142)
...|-|...|++..|++...|.+.++
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 35789999999999999999988763
No 54
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=39.95 E-value=29 Score=18.51 Aligned_cols=23 Identities=17% Similarity=0.023 Sum_probs=19.8
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...+.+|
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~ 34 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGI 34 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45778889999999999999887
No 55
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=39.25 E-value=24 Score=23.65 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=34.2
Q ss_pred CCCccCCCCCCCCHHHHHHHhcccccCCCCHHHHHHhCCCCCC-----CCCCCCcEEecC
Q 040221 12 RVPAENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPLNKN-----RNETTQPQPIAE 66 (142)
Q Consensus 12 ~~p~~~~~~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~l~~~-----~l~~Gq~l~vp~ 66 (142)
+.|+.+.+.-|.-+..+|+.. |++.+++.+.=--... -+.+|...+.+.
T Consensus 4 ~IPV~Y~ge~g~DL~~vA~~~------gls~~evi~~h~~~~y~V~~lGF~PGfpyL~~l 57 (141)
T 2zp2_A 4 EIPVCYGGEFGPDLEEVAKIN------QLSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGM 57 (141)
T ss_dssp EEEEEESTTTCTTHHHHHHHT------TCCHHHHHHHHTTCCEEEECCC--CCCCEEECC
T ss_pred EEeEEcCCCCCCCHHHHHHHh------CcCHHHHHHHHhCCCeEEEEEcCccCCceecCC
Confidence 357888888889999999999 9999999876543321 234555555443
No 56
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=39.20 E-value=18 Score=21.20 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=17.7
Q ss_pred cHHHHHHHhCCCHHHHHHHh
Q 040221 107 TLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N 126 (142)
+...+|+.+|++...|+.|=
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWE 26 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999999883
No 57
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=36.86 E-value=35 Score=18.91 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=20.7
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
...|=|...+|++.|++...+.+|
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~ 43 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRW 43 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 356788999999999999999888
No 58
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=36.39 E-value=35 Score=18.98 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=17.9
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
+.|=|...+|++.|++...|.+|
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~ 40 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAM 40 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45667788888888888888776
No 59
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=36.20 E-value=33 Score=22.11 Aligned_cols=24 Identities=4% Similarity=-0.008 Sum_probs=18.5
Q ss_pred ecCCC---cHHHHHHHhCCCHHHHHHH
Q 040221 102 IVRGD---TLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 102 V~~GD---Tl~~IA~rygvs~~~L~~~ 125 (142)
.++|| +...||++||++...+++.
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~A 48 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNG 48 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 35777 6679999999998766643
No 60
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=35.90 E-value=36 Score=18.47 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=18.8
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...|.+|
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~ 36 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLI 36 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 35667888899999998888887
No 61
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=35.49 E-value=33 Score=21.12 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 040221 105 GDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 105 GDTl~~IA~rygvs~~~L~~~ 125 (142)
+-|+.+||+.+|++...+.+.
T Consensus 20 ~~ti~dlA~~~gVS~~TVsR~ 40 (93)
T 2l0k_A 20 KKTVRVIAKEFGVSKSTVHKD 40 (93)
T ss_dssp CCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 458999999999999988775
No 62
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=35.13 E-value=40 Score=20.99 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.3
Q ss_pred ecCCC---cHHHHHHHhCCCHHHHHHH
Q 040221 102 IVRGD---TLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 102 V~~GD---Tl~~IA~rygvs~~~L~~~ 125 (142)
..+|| +...||++||++...+.+.
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~a 53 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKA 53 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 35777 6679999999997666544
No 63
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=34.98 E-value=38 Score=19.34 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=21.9
Q ss_pred EEecCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 100 VEIVRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 100 y~V~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
++.+.|=|...+|++.|++...|.+|=
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E 44 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIE 44 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 445678888899999999988888883
No 64
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=34.70 E-value=42 Score=17.93 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=19.7
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...+.+|
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~ 38 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQW 38 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 35678889999999999999888
No 65
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=34.62 E-value=33 Score=21.28 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.8
Q ss_pred cHHHHHHHhCCCHHHHHHHh
Q 040221 107 TLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N 126 (142)
+...+|+.+|++...|+.|=
T Consensus 4 ~i~e~A~~~gvs~~tLR~ye 23 (109)
T 1r8d_A 4 QVKQVAEISGVSIRTLHHYD 23 (109)
T ss_dssp CHHHHHHHHSCCHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999999984
No 66
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=34.60 E-value=40 Score=18.18 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=18.6
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...+.+|
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~ 34 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQL 34 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 35667888888889888888887
No 67
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=34.05 E-value=6.5 Score=25.32 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=29.4
Q ss_pred EEEecCCCcHHHHHHHhCCCHHHHHHHhCCCCCC
Q 040221 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDT 132 (142)
Q Consensus 99 ~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~~~~ 132 (142)
.|.|=..++|..||++.-.+.++|.+.+++....
T Consensus 43 ~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K 76 (113)
T 2dgz_A 43 PAILATNKILVDMAKMRPTTVENVKRIDGVSEGK 76 (113)
T ss_dssp HHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTG
T ss_pred CCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHH
Confidence 4677788899999999999999999999886643
No 68
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=34.00 E-value=41 Score=18.40 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=19.9
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...+.+|
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~ 46 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGV 46 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46778899999999999998887
No 69
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.97 E-value=41 Score=18.64 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=18.9
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
+.|=|...+|++.|++...|.+|
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~ 43 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEV 43 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 45778888899999988888887
No 70
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=33.84 E-value=39 Score=19.66 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCHHHHHHH
Q 040221 108 LWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 108 l~~IA~rygvs~~~L~~~ 125 (142)
...+|+.+||+...+..|
T Consensus 13 ~~~lA~~lGVs~~aVs~W 30 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQW 30 (71)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 678999999999999999
No 71
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=33.83 E-value=42 Score=21.13 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.4
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-.|-|...||+.+|++...+..+
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~ 58 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDN 58 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999998877653
No 72
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=33.43 E-value=29 Score=23.19 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhcccccCCCCHHHH----HHhCCC
Q 040221 20 SGDGREAAVAKTAGFVVFSGIAISIL----KALNPL 51 (142)
Q Consensus 20 ~~~~~~~~iA~~~~~~~~~gvs~~~L----~~~N~l 51 (142)
.+.+|+..+|+++ |++.+.| .+||..
T Consensus 93 ~kadTleeLA~~~------gid~~~L~~TV~~yN~~ 122 (160)
T 2lfc_A 93 FVKGSLESAAEQA------GIVVDELVQTVKNYQGY 122 (160)
T ss_dssp EECSSHHHHHHHH------TCCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHh------CCCHHHHHHHHHHHHHH
Confidence 4569999999999 9998765 578854
No 73
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.39 E-value=45 Score=20.04 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=19.7
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-.|-|...||+.+|++...++..
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~ 62 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNY 62 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 68999999999999998776643
No 74
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=32.99 E-value=39 Score=22.81 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=20.4
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|.++..||+.+|++...+.++
T Consensus 156 ~~G~s~~~Ia~~l~is~~tv~r~ 178 (183)
T 1gdt_A 156 QQGLGASHISKTMNIARSTVYKV 178 (183)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999888865
No 75
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=32.91 E-value=37 Score=21.03 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=17.9
Q ss_pred cHHHHHHHhCCCHHHHHHHh
Q 040221 107 TLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N 126 (142)
+...+|+.+|++...|+.|=
T Consensus 3 ~i~e~A~~~gvs~~tLR~ye 22 (108)
T 2vz4_A 3 SVGQVAGFAGVTVRTLHHYD 22 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 56789999999999999985
No 76
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=32.74 E-value=48 Score=19.54 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=16.5
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
+.|=|...+|++.|++...|.+|
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~ 42 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTW 42 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34567777777777777777776
No 77
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=32.60 E-value=26 Score=18.11 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=16.5
Q ss_pred cHHHHHHHhCCCHHHHHHHh
Q 040221 107 TLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N 126 (142)
+++.+|+.+|++.+++.+..
T Consensus 4 rv~~lAkel~~~~k~l~~~l 23 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQF 23 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 46789999999999887753
No 78
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=32.59 E-value=40 Score=19.05 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=16.4
Q ss_pred CHHHHHHHhcccccCCCCHHHHHHh
Q 040221 24 REAAVAKTAGFVVFSGIAISILKAL 48 (142)
Q Consensus 24 ~~~~iA~~~~~~~~~gvs~~~L~~~ 48 (142)
|..+||++. |||...+.++
T Consensus 2 T~~diA~~a------GVS~sTVSrv 20 (65)
T 1uxc_A 2 KLDEIARLA------GVSRTTASYV 20 (65)
T ss_dssp CHHHHHHHH------TSCHHHHHHH
T ss_pred CHHHHHHHH------CcCHHHHHHH
Confidence 578999999 9999999654
No 79
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=32.37 E-value=30 Score=19.43 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=14.2
Q ss_pred HHHHHhCCCHHHHHHHh
Q 040221 110 GLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 110 ~IA~rygvs~~~L~~~N 126 (142)
.-|+++|++.++|+++=
T Consensus 20 ~~Ak~lGlsleEIrefL 36 (57)
T 1b0n_B 20 VEAKEANISPEEIRKYL 36 (57)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 44899999999998874
No 80
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=31.84 E-value=37 Score=18.83 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=20.9
Q ss_pred EecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 101 EIVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 101 ~V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..+.|=|...+|++.|++...|.+|
T Consensus 17 r~~~glsq~~lA~~~gis~~~is~~ 41 (73)
T 3omt_A 17 LAEKGKTNLWLTETLDKNKTTVSKW 41 (73)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3456788899999999999988887
No 81
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=31.83 E-value=42 Score=21.39 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=20.1
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
.-.|-|...||+.+|++...+...
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~ 144 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNT 144 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 357999999999999998877643
No 82
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.64 E-value=53 Score=18.89 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.4
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-+.|=|..++|++.|++...|.+|
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~ 51 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDL 51 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 356778999999999999998887
No 83
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=31.16 E-value=40 Score=19.64 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHhCCCHHHHH-HHh
Q 040221 104 RGDTLWGLSRKYGVSIDAIK-EAN 126 (142)
Q Consensus 104 ~GDTl~~IA~rygvs~~~L~-~~N 126 (142)
+++||...|+.+|+.+++|. ++|
T Consensus 39 ~~~tL~~Aa~~~gid~~~ll~~Ln 62 (73)
T 2k5e_A 39 QNESLEQGANAHGLNVEDILRDLN 62 (73)
T ss_dssp GGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHH
Confidence 67899999999999999876 445
No 84
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=31.04 E-value=38 Score=19.06 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=11.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 040221 105 GDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 105 GDTl~~IA~rygvs~~~L~~~ 125 (142)
|=|...+|++.|++...|.+|
T Consensus 15 glsq~~lA~~~gis~~~i~~~ 35 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCNI 35 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHH
Confidence 445555555555555555554
No 85
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=30.62 E-value=59 Score=18.46 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=18.7
Q ss_pred ecCCCcHHHHHHHhCCCHHHHH
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIK 123 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~ 123 (142)
|..|-|.-.+|.+|+.+.++-+
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~ar 36 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEKAR 36 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHHHH
T ss_pred HhccccHHHHHHHhCCcHHHHH
Confidence 5689999999999999987654
No 86
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=30.59 E-value=49 Score=21.03 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=17.6
Q ss_pred cCCC---cHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGD---TLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GD---Tl~~IA~rygvs~~~L~~~ 125 (142)
.+|| +...||++||++...+.+.
T Consensus 32 ~~g~~Lps~~~La~~~~vSr~tvr~A 57 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 5677 5569999999998766544
No 87
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=30.56 E-value=51 Score=21.43 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.2
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
+..|-|...||+..|++...|-+.+
T Consensus 72 L~~G~syreIA~~~g~S~aTIsRv~ 96 (119)
T 3kor_A 72 IKQGYTYATIEQESGASTATISRVK 96 (119)
T ss_dssp HHHTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3578999999999999999998876
No 88
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.27 E-value=39 Score=18.57 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.3
Q ss_pred CcHHHHHHHhCCCHHHHHHHh
Q 040221 106 DTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~N 126 (142)
-|-..+|++.|++...+..|-
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 377899999999999999884
No 89
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.09 E-value=55 Score=17.97 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=19.1
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...|.+|
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~ 38 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQW 38 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 35668889999999999888887
No 90
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.52 E-value=52 Score=19.67 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=22.2
Q ss_pred EecCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 101 EIVRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 101 ~V~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
..+.|=|...+|++.|++...|.+|-
T Consensus 33 R~~~glTq~eLA~~~GiS~~tis~iE 58 (88)
T 3t76_A 33 LIDRDMKKGELREAVGVSKSTFAKLG 58 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34678899999999999999998884
No 91
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.51 E-value=55 Score=20.48 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.8
Q ss_pred cCCCcHHHHHHHhCCCHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKE 124 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~ 124 (142)
-.|-|...||+.+|++...+..
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~ 60 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYD 60 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4688999999999999887664
No 92
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=29.46 E-value=64 Score=18.89 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhcccccCCCCHHHHH-HhCC
Q 040221 20 SGDGREAAVAKTAGFVVFSGIAISILK-ALNP 50 (142)
Q Consensus 20 ~~~~~~~~iA~~~~~~~~~gvs~~~L~-~~N~ 50 (142)
.+.+++...|+.+ |++++.|. ++|.
T Consensus 36 a~~~tLeeA~~~h------giD~d~ll~eLn~ 61 (76)
T 2k53_A 36 SMGESIEDACAVH------GIDADKLVKELNE 61 (76)
T ss_dssp CCCSBHHHHHHHH------TCCHHHHHHHHHH
T ss_pred cccccHHHHHHHc------CCCHHHHHHHHHH
Confidence 4679999999999 99999875 6664
No 93
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=29.45 E-value=48 Score=22.94 Aligned_cols=24 Identities=4% Similarity=0.241 Sum_probs=21.4
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
..|.++..||+.+|++...+.++=
T Consensus 173 ~~G~s~~~Ia~~l~is~~tv~r~l 196 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRIK 196 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999998863
No 94
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=29.01 E-value=45 Score=20.59 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=17.0
Q ss_pred cCCC---cHHHHHHHhCCCHHHHHH
Q 040221 103 VRGD---TLWGLSRKYGVSIDAIKE 124 (142)
Q Consensus 103 ~~GD---Tl~~IA~rygvs~~~L~~ 124 (142)
++|+ +...||++||++...+.+
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~ 62 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVN 62 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHH
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHH
Confidence 4555 778999999999766654
No 95
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=28.82 E-value=55 Score=18.48 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=18.0
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
+.|=|...+|++.|++...|.+|
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~ 44 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGI 44 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 45677788888888888888777
No 96
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=28.60 E-value=56 Score=18.39 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=18.5
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...|.+|
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~ 43 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKI 43 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 45677888888888888888877
No 97
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=28.32 E-value=49 Score=18.57 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=15.8
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
=++..||+++|++...+.+.
T Consensus 26 ~s~~eLA~~lglsr~tv~~~ 45 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLNQV 45 (67)
T ss_dssp EEHHHHHHHHCSCHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHH
Confidence 37889999999997766543
No 98
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=28.27 E-value=57 Score=20.10 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHH
Q 040221 104 RGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 104 ~GDTl~~IA~rygvs~~~L~~~ 125 (142)
.|-|+..||+.+|++...++..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~ 59 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQI 59 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 5679999999999998776543
No 99
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=28.01 E-value=57 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=18.3
Q ss_pred ecCCCcH---HHHHHHhCCCHHHHHHH
Q 040221 102 IVRGDTL---WGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 102 V~~GDTl---~~IA~rygvs~~~L~~~ 125 (142)
.++||-| ..+|++||++...+++.
T Consensus 32 l~pG~~LPser~La~~~gVSr~tVReA 58 (134)
T 4ham_A 32 LQEGEKILSIREFASRIGVNPNTVSKA 58 (134)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHCCCHHHHHHH
Confidence 4788855 68999999997666543
No 100
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=27.77 E-value=56 Score=18.20 Aligned_cols=33 Identities=9% Similarity=-0.120 Sum_probs=23.9
Q ss_pred cHHHHHHHhCCCHHHHHHHhCC--CCCCCCCCCEE
Q 040221 107 TLWGLSRKYGVSIDAIKEANGL--SGDTIYAGKKL 139 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N~l--~~~~l~~Gq~L 139 (142)
++.++|+.+|++...|++|=.- -...++.|...
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~g~fP~piklG~~~ 46 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA 46 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHCCCSEESSSCE
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCCCCCCEEeCCCe
Confidence 6789999999999999998532 22336666543
No 101
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=27.63 E-value=46 Score=18.87 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=20.8
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH-hC
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA-NG 127 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~-N~ 127 (142)
+.|=|...+|++.|++...+.+| |+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 45778889999999999999887 54
No 102
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=27.40 E-value=59 Score=19.31 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.9
Q ss_pred cHHHHHHHhCCCHHHHHH
Q 040221 107 TLWGLSRKYGVSIDAIKE 124 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~ 124 (142)
|...||+++|++-..+-+
T Consensus 31 Ta~~IAkkLg~sK~~vNr 48 (75)
T 1sfu_A 31 TAISLSNRLKINKKKINQ 48 (75)
T ss_dssp CHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHH
Confidence 899999999999766443
No 103
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=27.39 E-value=35 Score=15.85 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=14.4
Q ss_pred cHHHHHHHhCCC-HHHHHHHhCC.
Q 040221 107 TLWGLSRKYGVS-IDAIKEANGL. 128 (142)
Q Consensus 107 Tl~~IA~rygvs-~~~L~~~N~l. 128 (142)
-+.+||+...++ +.++.+-|++
T Consensus 3 yIp~IAe~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 3 YITTIAGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred chhHHHHHHhHHHHHHHHHHcCC.
Confidence 356788887644 5667666654
No 104
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.31 E-value=60 Score=18.48 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.5
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...|.+|
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~ 45 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNF 45 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 46778889999999998888877
No 105
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.17 E-value=40 Score=19.92 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=19.8
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-.|-+...||+.+|++...++..
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~ 64 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTH 64 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998887654
No 106
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=26.60 E-value=56 Score=18.51 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=18.3
Q ss_pred CCHHHHHHHhcccccCCCCHHHHHHhC
Q 040221 23 GREAAVAKTAGFVVFSGIAISILKALN 49 (142)
Q Consensus 23 ~~~~~iA~~~~~~~~~gvs~~~L~~~N 49 (142)
-+..+||++. |||...+-.+-
T Consensus 10 ~t~~diA~~a------GVS~sTVSr~l 30 (67)
T 2l8n_A 10 ATMKDVALKA------KVSTATVSRAL 30 (67)
T ss_dssp CCHHHHHHHT------TCCHHHHHHTT
T ss_pred CCHHHHHHHH------CCCHHHHHHHH
Confidence 4799999999 99999997654
No 107
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=26.11 E-value=58 Score=19.49 Aligned_cols=20 Identities=30% Similarity=0.084 Sum_probs=15.8
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
=++.+||+.+|++...|.+.
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~ 39 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIM 39 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 38889999999998777553
No 108
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.90 E-value=59 Score=19.65 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=16.0
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
=++.+||+.+|++...|.+.
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~ 38 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKA 38 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 48889999999998777653
No 109
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=25.66 E-value=53 Score=18.58 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=18.1
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...+.+|
T Consensus 25 ~~gltq~elA~~~gis~~~is~~ 47 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKT 47 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45667788888888888888777
No 110
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.43 E-value=40 Score=20.40 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=21.2
Q ss_pred cCCC---cHHHHHHHhCCCHHHHHHH-hCCCC
Q 040221 103 VRGD---TLWGLSRKYGVSIDAIKEA-NGLSG 130 (142)
Q Consensus 103 ~~GD---Tl~~IA~rygvs~~~L~~~-N~l~~ 130 (142)
.+|+ +...||++||++...+.+. +.|..
T Consensus 30 ~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~ 61 (102)
T 1v4r_A 30 APGDTLPSVADIRAQFGVAAKTVSRALAVLKS 61 (102)
T ss_dssp CTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTT
T ss_pred CCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555 6789999999998887755 45555
No 111
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=25.17 E-value=78 Score=18.30 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.0
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
-+.|=|...+|++.|++...|.+|
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~ 46 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADY 46 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 356778899999999998888777
No 112
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=25.16 E-value=71 Score=17.26 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=19.1
Q ss_pred cCCCcHHHHHHHhC--CCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYG--VSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~ryg--vs~~~L~~~ 125 (142)
..|=|...+|++.| ++...+.+|
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~ 43 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSY 43 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHH
Confidence 45678889999999 898888887
No 113
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.79 E-value=57 Score=19.19 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=13.9
Q ss_pred cHHHHHHHhCCCHHHHH
Q 040221 107 TLWGLSRKYGVSIDAIK 123 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~ 123 (142)
|+.+||+.||++...+.
T Consensus 26 sv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQVR 42 (77)
T ss_dssp EHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHCCCHHHHH
Confidence 78899999999976544
No 114
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=24.75 E-value=26 Score=22.59 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=15.4
Q ss_pred CcHHHHHHHhCCCHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIK 123 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~ 123 (142)
++|..||+-|||+++.|.
T Consensus 60 ~~l~~iA~~f~V~~~yl~ 77 (123)
T 3qwg_A 60 ATMAALANFFRIKAAYFT 77 (123)
T ss_dssp HHHHHHHHHTTSCTHHHH
T ss_pred HHHHHHHHHhCCCHHHHc
Confidence 589999999999987664
No 115
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=24.71 E-value=62 Score=19.56 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=15.9
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
=++.+||+.+|++...|.+.
T Consensus 22 ~~~~~lA~~~~~S~~~l~r~ 41 (108)
T 3oou_A 22 MSLKTLGNDFHINAVYLGQL 41 (108)
T ss_dssp CCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 47889999999998777653
No 116
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.52 E-value=59 Score=21.44 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=18.5
Q ss_pred cHHHHHHHhCCCHHHHHHHh
Q 040221 107 TLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N 126 (142)
+...+|+.+|++...|+-|=
T Consensus 18 ~I~evA~~~gvs~~tLR~Ye 37 (148)
T 3gpv_A 18 TIGQVAKMQHLTISQIRYYD 37 (148)
T ss_dssp CHHHHHHHTTCCHHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHHH
Confidence 78899999999999999886
No 117
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.43 E-value=81 Score=18.79 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.0
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
+..|-+...||+++|++...+...
T Consensus 41 ~~~G~s~~eIA~~L~iS~~TV~~~ 64 (90)
T 3ulq_B 41 VEKGFTNQEIADALHLSKRSIEYS 64 (90)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 348999999999999998877654
No 118
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=23.93 E-value=65 Score=19.66 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=16.2
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
=++..||+.+|++...|.+.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~ 43 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERL 43 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 48899999999998777653
No 119
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=23.81 E-value=58 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.292 Sum_probs=19.9
Q ss_pred ecCCCcHHHHHHHh-CCCHHHHHH
Q 040221 102 IVRGDTLWGLSRKY-GVSIDAIKE 124 (142)
Q Consensus 102 V~~GDTl~~IA~ry-gvs~~~L~~ 124 (142)
...|.|...|+..| +++.+++..
T Consensus 61 l~~G~s~eeIl~~yP~Lt~edI~a 84 (106)
T 2ga1_A 61 RQQGAPDKELLANYPGLTAEDLSA 84 (106)
T ss_dssp HHTTCCHHHHHHHSTTCCHHHHHH
T ss_pred HHcCCCHHHHHHHCCCCCHHHHHH
Confidence 46899999999999 899988875
No 120
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=23.76 E-value=59 Score=18.79 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=19.7
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|...+|++.|++...|.+|
T Consensus 28 ~~glsq~~lA~~~gis~~~is~~ 50 (92)
T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGAL 50 (92)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45778889999999999988887
No 121
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=23.63 E-value=80 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.3
Q ss_pred eEEEecCCCcHHHHHHHhCCC
Q 040221 98 RTVEIVRGDTLWGLSRKYGVS 118 (142)
Q Consensus 98 ~~y~V~~GDTl~~IA~rygvs 118 (142)
..+.+..|+||-+.+++.|+.
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~ 36 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNID 36 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTCC
T ss_pred EEEEECCCCHHHHHHHHcCCC
Confidence 567889999999999998876
No 122
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=23.59 E-value=83 Score=18.59 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=18.7
Q ss_pred eEEEecCCCcHHHHHHHhCCCH
Q 040221 98 RTVEIVRGDTLWGLSRKYGVSI 119 (142)
Q Consensus 98 ~~y~V~~GDTl~~IA~rygvs~ 119 (142)
..+.+..|+||-+.+.+.|+.+
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi~i 34 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGYDL 34 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCC
Confidence 5678899999999999988753
No 123
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=23.39 E-value=74 Score=19.48 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.0
Q ss_pred eEEEecCCCcHHHHHHHhCCCHH
Q 040221 98 RTVEIVRGDTLWGLSRKYGVSID 120 (142)
Q Consensus 98 ~~y~V~~GDTl~~IA~rygvs~~ 120 (142)
....+..|+||-++|.+.|+.+.
T Consensus 19 ~~v~~~~g~tLL~aa~~~gi~i~ 41 (108)
T 2bt6_A 19 LTTKGKIGDSLLDVVVQNNLDID 41 (108)
T ss_dssp EEEEEETTCBHHHHHHHTTCCCT
T ss_pred EEEEECCCChHHHHHHHcCCCCC
Confidence 36678899999999999988643
No 124
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=23.37 E-value=28 Score=22.71 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=15.8
Q ss_pred CcHHHHHHHhCCCHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIK 123 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~ 123 (142)
++|..||+-|||+++.|.
T Consensus 62 ~~l~~iA~~f~V~~~yl~ 79 (135)
T 3r1f_A 62 ATMAALANFFRIKAAYFT 79 (135)
T ss_dssp HHHHHHHHHHTSCTHHHH
T ss_pred HHHHHHHHHhCCCHHHHc
Confidence 589999999999987765
No 125
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=23.20 E-value=49 Score=18.61 Aligned_cols=25 Identities=16% Similarity=0.043 Sum_probs=20.4
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
...|=|...+|++.|++...+.+|=
T Consensus 21 ~~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 21 KKLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 3567788899999999988888883
No 126
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=22.83 E-value=78 Score=18.92 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.3
Q ss_pred ceEEEecCCCcHHHHHHHhCCCH
Q 040221 97 CRTVEIVRGDTLWGLSRKYGVSI 119 (142)
Q Consensus 97 ~~~y~V~~GDTl~~IA~rygvs~ 119 (142)
...+.+..|+||-+.+.+.|+.+
T Consensus 15 ~~~~~~~~g~tlL~a~~~~gi~i 37 (98)
T 1frd_A 15 DTTIEIDEETTILDGAEENGIEL 37 (98)
T ss_dssp EEEEEEETTSCHHHHHHHTTCCC
T ss_pred CEEEEeCCCCcHHHHHHHcCCCc
Confidence 45778899999999999988753
No 127
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=22.71 E-value=78 Score=18.90 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHH
Q 040221 104 RGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 104 ~GDTl~~IA~rygvs~~~L~~~ 125 (142)
.|=|...+|++.|++...|.+|
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~ 34 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSI 34 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4556666666666666666665
No 128
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.60 E-value=82 Score=18.42 Aligned_cols=24 Identities=13% Similarity=-0.038 Sum_probs=19.9
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
..|=|...+|++.|++...|.+|=
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e 38 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYE 38 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 457788899999999998888873
No 129
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=22.55 E-value=63 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCCccCCCCCCCCHHHHHHHhcccccCCCCHHHHHHhCC
Q 040221 12 RVPAENDGSGDGREAAVAKTAGFVVFSGIAISILKALNP 50 (142)
Q Consensus 12 ~~p~~~~~~~~~~~~~iA~~~~~~~~~gvs~~~L~~~N~ 50 (142)
+-|+.+++.-|--+..+|+.. |++.+++.+.=-
T Consensus 87 ~IPV~Y~~~~gpDL~~vA~~~------gLs~~evi~~H~ 119 (225)
T 2phc_B 87 EIPVAYGGEFGPDIEFVAQYN------GLSVDDVIEIHS 119 (225)
T ss_dssp EEEEEESTTTCTTHHHHHHHH------TCCHHHHHHHHH
T ss_pred EEEeEeCCCCCCCHHHHHHHh------CcCHHHHHHHhh
Confidence 468888888788899999999 999999987643
No 130
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=22.55 E-value=81 Score=18.73 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=21.0
Q ss_pred EecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 101 EIVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 101 ~V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..+.|=|...+|++.|++...|.+|
T Consensus 39 R~~~glsq~elA~~lgvs~~~is~~ 63 (99)
T 2ppx_A 39 RRALKLTQEEFSARYHIPLGTLRDW 63 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHH
Confidence 3456788889999999999999888
No 131
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=22.52 E-value=62 Score=19.75 Aligned_cols=18 Identities=6% Similarity=0.145 Sum_probs=14.7
Q ss_pred cHHHHHHHhCCCHHHHHH
Q 040221 107 TLWGLSRKYGVSIDAIKE 124 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~ 124 (142)
-+..+|+.||+++++|..
T Consensus 6 I~~~Va~~f~i~~~dl~s 23 (94)
T 1j1v_A 6 IQKTVAEYYKIKVADLLS 23 (94)
T ss_dssp HHHHHHHHTTCCHHHHHS
T ss_pred HHHHHHHHhCCCHHHHhC
Confidence 356789999999999974
No 132
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.25 E-value=86 Score=19.13 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.5
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|-+..+||+++|++...++..
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~ 69 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQ 69 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999998876654
No 133
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=22.07 E-value=70 Score=19.10 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=16.1
Q ss_pred cHHHHHHHhCCCHHHHHHH
Q 040221 107 TLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~ 125 (142)
++..+|+.|+++.+++.++
T Consensus 32 sl~~La~ll~ls~~~vE~~ 50 (84)
T 1ufm_A 32 TFEELGALLEIPAAKAEKI 50 (84)
T ss_dssp EHHHHHHHTTSCHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHH
Confidence 7889999999998887654
No 134
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=21.88 E-value=71 Score=21.26 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=18.4
Q ss_pred cHHHHHHHhCCCHHHHHHHh
Q 040221 107 TLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N 126 (142)
+...+|+.+|++...|+-|=
T Consensus 13 ~i~e~A~~~gvs~~TLR~ye 32 (154)
T 2zhg_A 13 TPGEVAKRSGVAVSALHFYE 32 (154)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 77899999999999999985
No 135
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=21.82 E-value=19 Score=24.68 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=0.0
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
...|.++..||+.+|++...++++=
T Consensus 155 ~~~G~s~~~Ia~~l~vs~~Tvyr~l 179 (193)
T 3uj3_X 155 LAQGIPRKQVALIYDVALSTLYKKH 179 (193)
T ss_dssp -------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3579999999999999999988763
No 136
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=21.82 E-value=13 Score=23.31 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=27.8
Q ss_pred EEEecCCCcHHHHHHHhCCCHHHHHHHhCCCC
Q 040221 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSG 130 (142)
Q Consensus 99 ~y~V~~GDTl~~IA~rygvs~~~L~~~N~l~~ 130 (142)
.|.|=..++|..||++.-.+.++|...+++..
T Consensus 43 ~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~ 74 (101)
T 2rrd_A 43 YFNIFNTVTLKKLAESLSSDPEVLLQIDGVTE 74 (101)
T ss_dssp HHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCH
T ss_pred CCeeECHHHHHHHHHhCCCCHHHHhhCCCCCH
Confidence 46677888999999999999999999888754
No 137
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=21.81 E-value=89 Score=18.67 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=19.1
Q ss_pred ceEEEecCCCcHHHHHHHhCCCH
Q 040221 97 CRTVEIVRGDTLWGLSRKYGVSI 119 (142)
Q Consensus 97 ~~~y~V~~GDTl~~IA~rygvs~ 119 (142)
...+.+..|+||-+.+++.|+.+
T Consensus 16 ~~~~~~~~g~tlL~a~~~~gi~i 38 (98)
T 1jq4_A 16 SLRFECRSDEDVITAALRQNIFL 38 (98)
T ss_dssp EEEEEEESCCTHHHHHHHHTCCC
T ss_pred cEEEEeCCCChHHHHHHHcCCCC
Confidence 45678899999999999988753
No 138
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.54 E-value=77 Score=19.07 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=15.7
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
-++.+||+.+|++...|.+.
T Consensus 21 ~~~~~lA~~~~~S~~~l~r~ 40 (107)
T 2k9s_A 21 FDIASVAQHVCLSPSRLSHL 40 (107)
T ss_dssp CCHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 47889999999988776553
No 139
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=21.45 E-value=85 Score=17.81 Aligned_cols=19 Identities=11% Similarity=0.401 Sum_probs=17.1
Q ss_pred cHHHHHHHhCCCHHHHHHH
Q 040221 107 TLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~ 125 (142)
|...+|++.|++...|.+|
T Consensus 29 sq~~lA~~~gis~~~is~~ 47 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKI 47 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHH
Confidence 7889999999999998887
No 140
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=21.44 E-value=95 Score=18.03 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=19.2
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..|=|..++|++.|++...|.+|
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~ 41 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRL 41 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 45678889999999999888887
No 141
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=21.30 E-value=84 Score=19.11 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.6
Q ss_pred eEEEecCCCcHHHHHHHhCCC
Q 040221 98 RTVEIVRGDTLWGLSRKYGVS 118 (142)
Q Consensus 98 ~~y~V~~GDTl~~IA~rygvs 118 (142)
....+..|+||-+.|.+.|+.
T Consensus 13 ~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 567889999999999999886
No 142
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.19 E-value=88 Score=18.47 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.0
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
-|...||+++|++...+.+.
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~ 47 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHH
Confidence 48899999999997765543
No 143
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=21.13 E-value=61 Score=22.81 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=15.1
Q ss_pred cHHHHHHHhCCCHHHHH
Q 040221 107 TLWGLSRKYGVSIDAIK 123 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~ 123 (142)
.|..||+.||+.|..+.
T Consensus 172 yL~EIA~ey~V~w~~~~ 188 (193)
T 3ggy_A 172 YLKEIAKTYDVPYSKLE 188 (193)
T ss_dssp HHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHcCCCCCCcc
Confidence 78899999999998775
No 144
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=21.12 E-value=1e+02 Score=18.78 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=21.0
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHh
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEAN 126 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~N 126 (142)
..|=|...+|++.|++...|.+|=
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E 70 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYE 70 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 568899999999999999998884
No 145
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=21.11 E-value=34 Score=19.85 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=26.9
Q ss_pred cHHHHHHHhCCCHHHHHHHhCCC---CCCCCCCCEEec
Q 040221 107 TLWGLSRKYGVSIDAIKEANGLS---GDTIYAGKKLII 141 (142)
Q Consensus 107 Tl~~IA~rygvs~~~L~~~N~l~---~~~l~~Gq~L~I 141 (142)
|+...|+-+|++...++++=.-. ...++.|.+.+|
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~~~~~~~~~~iG~~~lI 55 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQI 55 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHHCTTCSSEEEETTEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCCCCcEEEeCCEEEE
Confidence 88899999999999988885332 235778888776
No 146
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=21.09 E-value=86 Score=17.90 Aligned_cols=19 Identities=5% Similarity=-0.064 Sum_probs=15.6
Q ss_pred CcHHHHHHHhCCCHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKE 124 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~ 124 (142)
-+..+||+.+|++...+.+
T Consensus 15 ~s~~eLa~~lgvs~~tv~r 33 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARY 33 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 4889999999999766554
No 147
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=21.05 E-value=13 Score=22.40 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=26.1
Q ss_pred EEecCCCcHHHHHHHhCCCHHHHHHHhCCCC
Q 040221 100 VEIVRGDTLWGLSRKYGVSIDAIKEANGLSG 130 (142)
Q Consensus 100 y~V~~GDTl~~IA~rygvs~~~L~~~N~l~~ 130 (142)
|.|=...||..||++.-.+.++|...+++..
T Consensus 29 ~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~ 59 (85)
T 2kv2_A 29 FNIFNTVTLKKLAESLSSDPEVLLQIDGVTE 59 (85)
T ss_dssp HHHCCHHHHHHHHHHCCSCHHHHHTSSSCCH
T ss_pred ceeECHHHHHHHHHhCCCCHHHHhhCCCCCH
Confidence 5566778999999999999999998887754
No 148
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.90 E-value=93 Score=17.90 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=21.5
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHH-hC
Q 040221 102 IVRGDTLWGLSRKYGVSIDAIKEA-NG 127 (142)
Q Consensus 102 V~~GDTl~~IA~rygvs~~~L~~~-N~ 127 (142)
...|=|...+|++.|++...|.+| |+
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 24 LDAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 357788899999999999998887 44
No 149
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.73 E-value=96 Score=19.66 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=17.4
Q ss_pred cCCC---cHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGD---TLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GD---Tl~~IA~rygvs~~~L~~~ 125 (142)
++|| +...||++||++...+.+.
T Consensus 30 ~~G~~lPse~~La~~~~vSr~tvr~A 55 (126)
T 3by6_A 30 SANDQLPSVRETALQEKINPNTVAKA 55 (126)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 5666 5679999999998766543
No 150
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=20.66 E-value=82 Score=19.42 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=16.4
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 040221 106 DTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 106 DTl~~IA~rygvs~~~L~~~ 125 (142)
=++.+||+.+|++...|.+.
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~ 43 (120)
T 3mkl_A 24 WTLARIASELLMSPSLLKKK 43 (120)
T ss_dssp CCHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHH
Confidence 48899999999998877654
No 151
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=20.41 E-value=1e+02 Score=18.94 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.4
Q ss_pred ceEEEecCCCcHHHHHHHhCCCH
Q 040221 97 CRTVEIVRGDTLWGLSRKYGVSI 119 (142)
Q Consensus 97 ~~~y~V~~GDTl~~IA~rygvs~ 119 (142)
...+.+..|+||-+.|.+.|+.+
T Consensus 16 ~~~v~~~~g~tlL~aa~~~Gi~i 38 (113)
T 3ah7_A 16 GLTVEVKPGTNILELAHDHHIEM 38 (113)
T ss_dssp CEEEECCTTCBHHHHHHHTTCCC
T ss_pred CeEEEECCCCcHHHHHHHcCCCC
Confidence 45788999999999999988753
No 152
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=20.23 E-value=91 Score=19.14 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=22.0
Q ss_pred EEecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 100 VEIVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 100 y~V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
.....|=|...+|++.|++...|.+|
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~ 56 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNM 56 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 34567889999999999999998888
No 153
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=20.21 E-value=1e+02 Score=19.21 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=16.0
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 040221 103 VRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 103 ~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
+.|=|...+|++.|++...|.++
T Consensus 18 ~~glSq~eLA~~~gis~~~is~i 40 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRI 40 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45667777777777777776665
No 154
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=20.16 E-value=94 Score=18.98 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.2
Q ss_pred EecCCCcHHHHHHHhCCCHHHHHHH
Q 040221 101 EIVRGDTLWGLSRKYGVSIDAIKEA 125 (142)
Q Consensus 101 ~V~~GDTl~~IA~rygvs~~~L~~~ 125 (142)
..+.|=|...+|++.|++...|.+|
T Consensus 30 R~~~gltq~elA~~~gis~~~is~~ 54 (114)
T 3vk0_A 30 RVNKGWSQEELARQCGLDRTYVSAV 54 (114)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3456778888899999988888887
Done!