Query 040222
Match_columns 262
No_of_seqs 174 out of 358
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04535 DUF588: Domain of unk 99.9 9.7E-26 2.1E-30 188.3 9.6 108 148-257 3-115 (149)
2 TIGR01569 A_tha_TIGR01569 plan 99.9 2.6E-23 5.6E-28 176.7 6.6 98 153-254 1-105 (154)
3 PF01284 MARVEL: Membrane-asso 97.8 9.8E-05 2.1E-09 59.1 8.1 100 150-254 4-103 (144)
4 KOG4788 Members of chemokine-l 80.0 8.5 0.00018 33.5 7.3 23 152-174 38-60 (172)
5 PF07077 DUF1345: Protein of u 70.5 20 0.00043 31.7 7.2 72 137-213 36-107 (180)
6 KOG4016 Synaptic vesicle prote 57.4 13 0.00028 34.5 3.6 66 148-213 21-92 (233)
7 PF09788 Tmemb_55A: Transmembr 45.3 26 0.00057 33.1 3.7 54 152-214 198-251 (256)
8 PF03188 Cytochrom_B561: Eukar 39.4 2E+02 0.0043 23.0 8.0 95 146-249 32-126 (137)
9 PF15555 DUF4658: Domain of un 38.7 60 0.0013 27.7 4.5 22 152-173 72-93 (129)
10 PF12304 BCLP: Beta-casein lik 34.7 87 0.0019 28.4 5.2 59 185-247 34-92 (188)
11 PF11190 DUF2976: Protein of u 29.4 2.4E+02 0.0051 22.6 6.3 50 155-204 32-81 (87)
12 PTZ00307 ethanolamine phosphot 27.9 2E+02 0.0044 28.8 7.0 87 155-251 66-153 (417)
13 PF06376 DUF1070: Protein of u 25.4 55 0.0012 22.1 1.7 17 232-248 13-29 (34)
14 COG1301 GltP Na+/H+-dicarboxyl 24.6 2.7E+02 0.0058 27.9 7.2 103 144-260 177-281 (415)
15 PF06653 Claudin_3: Tight junc 22.7 3E+02 0.0066 23.4 6.3 63 147-211 92-155 (163)
16 PF04103 CD20: CD20-like famil 22.7 28 0.00062 27.8 0.0 79 136-214 47-146 (150)
17 PF12271 Chs3p: Chitin synthas 22.1 1.3E+02 0.0028 29.0 4.3 90 149-241 148-241 (293)
18 KOG2662 Magnesium transporters 21.9 2.9E+02 0.0063 28.0 6.8 52 151-206 346-401 (414)
19 KOG4112 Signal peptidase subun 21.6 2.2E+02 0.0048 23.5 4.9 22 187-208 47-68 (101)
20 KOG2927 Membrane component of 20.0 2.6E+02 0.0056 27.9 5.9 24 181-204 218-241 (372)
No 1
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.93 E-value=9.7e-26 Score=188.30 Aligned_cols=108 Identities=43% Similarity=0.532 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----cccccccccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 040222 148 LMFANLGFRLIEVVLSLISFSVMAADKTQGW-----SGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIR 222 (262)
Q Consensus 148 l~ia~LvLRlla~vfslaSl~VMaTnkqt~~-----~~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~ 222 (262)
++.++|+||+++++++++|+++|++|+|+.. .+++|+|+++|+|+|++|+|+|+|+++|++.+++.+.+|+ .+
T Consensus 3 ~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~--~~ 80 (149)
T PF04535_consen 3 LRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK--LR 80 (149)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--Cc
Confidence 5678999999999999999999999999753 3689999999999999999999999999999999998877 56
Q ss_pred cccccceEEechHHHHHHHHHHhhhhhhhhhhhhh
Q 040222 223 YHLRQPFDFFMDQILAYLLISASSAAATRVDDWQS 257 (262)
Q Consensus 223 ~~~~awf~FigDQVlAYLLlSAASAAAaivdd~~s 257 (262)
++...|++|++||+++||++||++||+++.++++.
T Consensus 81 ~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~ 115 (149)
T PF04535_consen 81 SKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKK 115 (149)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77889999999999999999999999999988753
No 2
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=99.88 E-value=2.6e-23 Score=176.67 Aligned_cols=98 Identities=24% Similarity=0.265 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcc-------ccccccccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q 040222 153 LGFRLIEVVLSLISFSVMAADKTQGWS-------GDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHL 225 (262)
Q Consensus 153 LvLRlla~vfslaSl~VMaTnkqt~~~-------~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~~~~ 225 (262)
|+||+++++++++|+++|+||+|+.+. +++|+|+++|+|+|++|+|+|+|+++|++++++.+.+++.. .
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~----~ 76 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVF----F 76 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch----h
Confidence 479999999999999999999999853 47999999999999999999999999999999998877754 4
Q ss_pred ccceEEechHHHHHHHHHHhhhhhhhhhh
Q 040222 226 RQPFDFFMDQILAYLLISASSAAATRVDD 254 (262)
Q Consensus 226 ~awf~FigDQVlAYLLlSAASAAAaivdd 254 (262)
..|++|++||+++|||+||++||+++.+.
T Consensus 77 ~~~~~f~~D~v~~~Ll~sa~sAA~av~~l 105 (154)
T TIGR01569 77 KLIALFFLDLVMLALLSSGTSAAAAVAYV 105 (154)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999654
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=97.83 E-value=9.8e-05 Score=59.08 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccce
Q 040222 150 FANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPF 229 (262)
Q Consensus 150 ia~LvLRlla~vfslaSl~VMaTnkqt~~~~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~~~~~awf 229 (262)
....+||++|++++++.+.+++....+... .......+..|.+.+.++..+|++.-++...+. ... .......++
T Consensus 4 s~~~ilR~lq~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~---~~~~~~~~~ 78 (144)
T PF01284_consen 4 SPSGILRILQLVFALIIFGLVASSIATGSQ-IYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS-LKY---RPRIPWPLV 78 (144)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-Hhc---ccccccchh
Confidence 346899999999999999999988643221 345677889999999999999999988887665 111 123455677
Q ss_pred EEechHHHHHHHHHHhhhhhhhhhh
Q 040222 230 DFFMDQILAYLLISASSAAATRVDD 254 (262)
Q Consensus 230 ~FigDQVlAYLLlSAASAAAaivdd 254 (262)
+++.|.+++.|.++++++.+.-..+
T Consensus 79 ~~~~~~v~~il~l~a~~~~a~~~~~ 103 (144)
T PF01284_consen 79 EFIFDAVFAILWLAAFIALAAYLSD 103 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999988887755433
No 4
>KOG4788 consensus Members of chemokine-like factor super family and related proteins [Defense mechanisms]
Probab=79.98 E-value=8.5 Score=33.46 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 040222 152 NLGFRLIEVVLSLISFSVMAADK 174 (262)
Q Consensus 152 ~LvLRlla~vfslaSl~VMaTnk 174 (262)
.=+|++++++++++.+++.++..
T Consensus 38 ~G~Lki~e~~l~li~fi~i~~~~ 60 (172)
T KOG4788|consen 38 LGLLKILEIVLGLIIFICIASSL 60 (172)
T ss_pred HhHHHHHHHHHHHHHheeeecCc
Confidence 45689999999999999888773
No 5
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=70.49 E-value=20 Score=31.67 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=53.3
Q ss_pred hhhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccceehhHHHHHHHHHHHHHHHHHHHHH
Q 040222 137 SILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYY 213 (262)
Q Consensus 137 ~~~~r~kre~~l~ia~LvLRlla~vfslaSl~VMaTnkqt~~~~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~ 213 (262)
.+.++.++|+.-+...+++=+++.+.++++++++....+... ..-......+++..+.+.|.+++..+.+.+
T Consensus 36 ~~r~~a~~ed~~~~~~~~~~~~a~~asl~ai~~~l~~~~~~~-----~~~~~~~~~la~~tv~~sW~~ih~~FAl~Y 107 (180)
T PF07077_consen 36 RTRRRARREDEGRWVILLLVLVAAFASLVAIVLLLASAKDLS-----GAAKALHIALALATVVLSWLLIHTVFALHY 107 (180)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhCCCCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777888888888888888877754321 124556778889999999999999887654
No 6
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.42 E-value=13 Score=34.52 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--ccc---c-ccccceehhHHHHHHHHHHHHHHHHHHHHH
Q 040222 148 LMFANLGFRLIEVVLSLISFSVMAADKTQGWS--GDS---F-DRYREYRYCLSVNVIAFVYSGFQAYDLAYY 213 (262)
Q Consensus 148 l~ia~LvLRlla~vfslaSl~VMaTnkqt~~~--~a~---F-sd~~AFrYLVaanaIa~~YSllQl~~~iy~ 213 (262)
++.-..++|+++.+|+++-+.-+.+.--.... +-. | .+-.+=+|=+++.+++++=+++-++++++-
T Consensus 21 ~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f 92 (233)
T KOG4016|consen 21 LRKPQTILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYF 92 (233)
T ss_pred hcCchhHHHHHHHHHHHhheeeeccccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44458999999999998877666654221110 001 1 355677899999999999999999998774
No 7
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=45.27 E-value=26 Score=33.07 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccceehhHHHHHHHHHHHHHHHHHHHHHH
Q 040222 152 NLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYL 214 (262)
Q Consensus 152 ~LvLRlla~vfslaSl~VMaTnkqt~~~~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L 214 (262)
.+++=++.++|.++++.+|+.. .++..-....|++. ++.++.+++.+..++|..
T Consensus 198 ~i~f~llgllfliiaigltvGT-------~~~A~~~~giY~~w--v~~~l~a~~~~~rs~yy~ 251 (256)
T PF09788_consen 198 AIIFFLLGLLFLIIAIGLTVGT-------WTYAKTYGGIYVSW--VGLFLIALICLIRSIYYC 251 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-------HHHHhhcCcEeHHH--HHHHHHHHHHHHHhheeE
Confidence 4666678888888888888765 23322222345444 445666777777766653
No 8
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=39.35 E-value=2e+02 Score=22.98 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=55.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q 040222 146 ARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHL 225 (262)
Q Consensus 146 ~~l~ia~LvLRlla~vfslaSl~VMaTnkqt~~~~a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~~~~ 225 (262)
+.+...-..+-++++++.+++++++..+++.... .+|++.-+. ++ .++++..++|.+..+......+. +.+.
T Consensus 32 ~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~-~h~~s~H~~---lG--~~~~~l~~~Q~~~G~~~~~~~~~--~~~~ 103 (137)
T PF03188_consen 32 KWWFRIHWILQVLALVFAIIGFVAIFINKNRNGK-PHFKSWHSI---LG--LATFVLALLQPLLGFFRFFMPGL--PRKR 103 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CCCCCchhh---hh--HHHHHHHHHHHHHHHHHHccCCC--cccH
Confidence 4455677888999999999999999888765421 344444333 33 34445567888877766542221 1112
Q ss_pred ccceEEechHHHHHHHHHHhhhhh
Q 040222 226 RQPFDFFMDQILAYLLISASSAAA 249 (262)
Q Consensus 226 ~awf~FigDQVlAYLLlSAASAAA 249 (262)
+..+.- .=..+.|+++..+.++.
T Consensus 104 r~~~~~-~H~~~G~~~~~l~~~~i 126 (137)
T PF03188_consen 104 RPIWNK-WHRWLGYLIYVLAIATI 126 (137)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHH
Confidence 222211 26666776666655554
No 9
>PF15555 DUF4658: Domain of unknown function (DUF4658)
Probab=38.69 E-value=60 Score=27.74 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 040222 152 NLGFRLIEVVLSLISFSVMAAD 173 (262)
Q Consensus 152 ~LvLRlla~vfslaSl~VMaTn 173 (262)
+|+||+..+++..+++.+-..-
T Consensus 72 sLlL~L~~CiLL~vaLglyCgr 93 (129)
T PF15555_consen 72 SLLLRLCVCILLGVALGLYCGR 93 (129)
T ss_pred chhHHHHHHHHHHHHHHHHccC
Confidence 6999999999999999887654
No 10
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=34.72 E-value=87 Score=28.44 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=39.0
Q ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEechHHHHHHHHHHhhh
Q 040222 185 RYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSA 247 (262)
Q Consensus 185 d~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~~~~~awf~FigDQVlAYLLlSAASA 247 (262)
+--+..|.+ +|+|...=.++.+...+..++..|.+.+ +...|..|++- +.-.|+|++|+
T Consensus 34 ~av~~eY~v-sNiisv~Sgll~I~~GI~AIvlSrnl~~-~~L~W~Ll~~S--~ln~LlSaAc~ 92 (188)
T PF12304_consen 34 DAVTLEYAV-SNIISVTSGLLSIICGIVAIVLSRNLRN-RPLHWTLLVVS--LLNALLSAACA 92 (188)
T ss_pred ccceehhhH-HHHHHHHHHHHHHHHhHHHHhhhccCCC-CcchHHHHHHH--HHHHHHHHHHH
Confidence 444555654 6999999999999999999887776644 44566644443 33445555554
No 11
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=29.37 E-value=2.4e+02 Score=22.56 Aligned_cols=50 Identities=4% Similarity=0.027 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccccccccceehhHHHHHHHHHHHH
Q 040222 155 FRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAFVYSG 204 (262)
Q Consensus 155 LRlla~vfslaSl~VMaTnkqt~~~~a~Fsd~~AFrYLVaanaIa~~YSl 204 (262)
|=+++++|..++-..+.+=+|-...+.+|.++-++.-.=++-.+.++|-+
T Consensus 32 Lv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 32 LVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444333322224677777766444444444444433
No 12
>PTZ00307 ethanolamine phosphotransferase; Provisional
Probab=27.87 E-value=2e+02 Score=28.78 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccc-ccccceehhHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEec
Q 040222 155 FRLIEVVLSLISFSVMAADKTQGWSGDSF-DRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFM 233 (262)
Q Consensus 155 LRlla~vfslaSl~VMaTnkqt~~~~a~F-sd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~~~~~awf~Fig 233 (262)
+=++.++++++++.++.--. ..+ ...+...|++++ ...++|-.+-.++.-.+=.+| .++.+..+||-.+
T Consensus 66 ITl~G~~~~~~~~~~~~~~~------~~~~~~~p~w~~~~~a-~~lfly~~~D~lDGkqARrt~---~sSplGelfDhg~ 135 (417)
T PTZ00307 66 ITFTGFLIGMSSAALLLYFY------FFEEGVYPSWVLYYAA-FALFAYQTLDAIDGKQARRTG---TGSPLGELFDHGC 135 (417)
T ss_pred eeHHhHHHHHHHHHHHHHhc------ccccCCCccHHHHHHH-HHHHHHHHHhhcchHHhhhcC---CCCCchhHHHhhh
Confidence 44556666666665544211 011 123344555555 667888888887775543333 2567889999999
Q ss_pred hHHHHHHHHHHhhhhhhh
Q 040222 234 DQILAYLLISASSAAATR 251 (262)
Q Consensus 234 DQVlAYLLlSAASAAAai 251 (262)
|-+...+++-+.+.|.+.
T Consensus 136 D~~~~~~~~~~~~~a~~~ 153 (417)
T PTZ00307 136 DAFLTPFVLLNVSLATYM 153 (417)
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 999887777777766543
No 13
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=25.36 E-value=55 Score=22.12 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=13.5
Q ss_pred echHHHHHHHHHHhhhh
Q 040222 232 FMDQILAYLLISASSAA 248 (262)
Q Consensus 232 igDQVlAYLLlSAASAA 248 (262)
..||.++|+|+-++-..
T Consensus 13 aiDqgiay~Lm~~Al~~ 29 (34)
T PF06376_consen 13 AIDQGIAYMLMLVALVV 29 (34)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 36999999999876543
No 14
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=24.58 E-value=2.7e+02 Score=27.94 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=54.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccceehhHHHHHHHH-HHHHHHHHHHHHHHhcCCcccc
Q 040222 144 FEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIAF-VYSGFQAYDLAYYLAKGKHVIR 222 (262)
Q Consensus 144 re~~l~ia~LvLRlla~vfslaSl~VMaTnkqt~~~~a~Fsd~~AFrYLVaanaIa~-~YSllQl~~~iy~L~~gr~l~~ 222 (262)
.|.++++...++|++-+..-.+.+..++.- .+..+..|-.++.+-.++| ++-+..+.. +..+..|..
T Consensus 177 ~~~~~~v~~~vm~laPigvf~~~a~~v~~~--------G~~~L~~l~~~v~~~~~~~~l~~~vvl~~-~~~~~~g~s--- 244 (415)
T COG1301 177 SEAMFKVTNFVMRLAPIGVFGLMAFTVAKY--------GFGSLLSLGKLVLAVYLGLLLFVFVVLGL-LLKLLSGFS--- 244 (415)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCC---
Confidence 345566666777776665444433333332 4455555544444444432 222222222 223233443
Q ss_pred cccccceEEechHHHHHHHHHHhhhhhhhhhhhhhc-cC
Q 040222 223 YHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSN-WG 260 (262)
Q Consensus 223 ~~~~awf~FigDQVlAYLLlSAASAAAaivdd~~s~-wg 260 (262)
....+-.+.|-.+..+..+++.|+..++.+...+ -|
T Consensus 245 --~~~~~r~~~~~~~~Af~T~SS~atLPv~m~~~e~~~G 281 (415)
T COG1301 245 --PFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLG 281 (415)
T ss_pred --HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhcC
Confidence 2234446678888877777888887777664443 44
No 15
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=22.72 E-value=3e+02 Score=23.43 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-ceehhHHHHHHHHHHHHHHHHHHH
Q 040222 147 RLMFANLGFRLIEVVLSLISFSVMAADKTQGWSGDSFDRYR-EYRYCLSVNVIAFVYSGFQAYDLA 211 (262)
Q Consensus 147 ~l~ia~LvLRlla~vfslaSl~VMaTnkqt~~~~a~Fsd~~-AFrYLVaanaIa~~YSllQl~~~i 211 (262)
.+-..--++=++.++|.++|+++|+.+-.... .+|.+.. .+=|-.-..+++++-++....++.
T Consensus 92 ~~~~~i~~~s~li~il~~iavil~a~~~~~~~--~~~~~~~~~lGyS~wL~v~sail~~~~~~ls~ 155 (163)
T PF06653_consen 92 KWFHIISIFSLLIVILTIIAVILFAVNISSFN--NGYDPFSLSLGYSAWLCVASAILSLINFGLSG 155 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEeeccccc--cccccccceeehHHHHHHHHHHHHHHHHHHHH
Confidence 33334445567788889999999998854332 2333322 344444444444444555544433
No 16
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=22.66 E-value=28 Score=27.83 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=1.5
Q ss_pred hhhhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---c---------cccccccc----eeh-----hHH
Q 040222 136 ASILKRSKFEARLMFANLGFRLIEVVLSLISFSVMAADKTQGWS---G---------DSFDRYRE----YRY-----CLS 194 (262)
Q Consensus 136 ~~~~~r~kre~~l~ia~LvLRlla~vfslaSl~VMaTnkqt~~~---~---------a~Fsd~~A----FrY-----LVa 194 (262)
..+.-.+|....+-.+.+++=++.++++++++++.+.+-..... . ..+++.+. +++ ..+
T Consensus 47 l~i~s~k~~~~~lv~~~l~lsi~s~~~a~~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (150)
T PF04103_consen 47 LGIASEKKPTKCLVIASLVLSIVSALLALAGIILSSISLAQQHYYYCCCSEDSSPCSPYCYSSTEDCCYYCYSLQSLLLG 126 (150)
T ss_dssp -------------------------------------------------------S-SSGGGTTSHHHHHHHCT------
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCCccccccchHHHHHHHHHHHHHH
Confidence 34444555556677788889999999999888888776433221 0 01111111 111 467
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040222 195 VNVIAFVYSGFQAYDLAYYL 214 (262)
Q Consensus 195 anaIa~~YSllQl~~~iy~L 214 (262)
+.++.+++++++++.++...
T Consensus 127 i~~~lli~~vle~~vs~~~~ 146 (150)
T PF04103_consen 127 ILSVLLILSVLELCVSISSS 146 (150)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888876543
No 17
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=22.14 E-value=1.3e+02 Score=28.99 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-hcCCCCccc--cccccccceehhHHHHH-HHHHHHHHHHHHHHHHHhcCCcccccc
Q 040222 149 MFANLGFRLIEVVLSLISFSVMA-ADKTQGWSG--DSFDRYREYRYCLSVNV-IAFVYSGFQAYDLAYYLAKGKHVIRYH 224 (262)
Q Consensus 149 ~ia~LvLRlla~vfslaSl~VMa-Tnkqt~~~~--a~Fsd~~AFrYLVaana-Ia~~YSllQl~~~iy~L~~gr~l~~~~ 224 (262)
......+|++++++-++++.+-. |- .+|.+ ..-+...=|..+...|+ ..++|-++|+.+.+..+ ..+..+..-
T Consensus 148 ~~Sl~ll~~ss~~~f~~t~~isl~Tf--~~w~~~~~~~~~~~Lfvl~~l~p~i~l~~Y~v~q~~lv~~vL-~e~wp~g~i 224 (293)
T PF12271_consen 148 PLSLWLLRGSSLILFIGTFYISLDTF--KSWTGYLSPTNTIALFVLYYLLPAIFLVIYVVLQLILVLRVL-GERWPLGYI 224 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHhHHHHH
Confidence 34467788888877776665432 33 23332 22233333443444444 46789999998865444 333322223
Q ss_pred cccceEEechHHHHHHH
Q 040222 225 LRQPFDFFMDQILAYLL 241 (262)
Q Consensus 225 ~~awf~FigDQVlAYLL 241 (262)
...-+.|+.=||+.|.+
T Consensus 225 ~~~~~fFv~gQv~~y~~ 241 (293)
T PF12271_consen 225 LLGVFFFVAGQVFLYVF 241 (293)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444467777777654
No 18
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=21.86 E-value=2.9e+02 Score=27.96 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCCCccccccccccceehhHHHHHHHHHHHHHH
Q 040222 151 ANLGFRLIEVVLSLISFSVMAAD----KTQGWSGDSFDRYREYRYCLSVNVIAFVYSGFQ 206 (262)
Q Consensus 151 a~LvLRlla~vfslaSl~VMaTn----kqt~~~~a~Fsd~~AFrYLVaanaIa~~YSllQ 206 (262)
..|-|.+.+--||+..+.+++.- =+.. =|.+=.+|.|++...++.|+|-+.-
T Consensus 346 iqleL~Lt~gT~~~s~~~~va~ifGMNl~~~----l~~~~~~F~~vv~~~~~~~~~lf~~ 401 (414)
T KOG2662|consen 346 IQLELLLTIGTFCLSVFSVVAGIFGMNLPSS----LEEDHYAFKWVVGITFTLCIVLFVV 401 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccch----hccCCChhhhhHHHHHHHHHHHHHH
Confidence 34555555555555555555543 2222 2345589999999999999987776
No 19
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.58 E-value=2.2e+02 Score=23.49 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=17.5
Q ss_pred cceehhHHHHHHHHHHHHHHHH
Q 040222 187 REYRYCLSVNVIAFVYSGFQAY 208 (262)
Q Consensus 187 ~AFrYLVaanaIa~~YSllQl~ 208 (262)
+.|.|.|.+-+++|+.+++-.+
T Consensus 47 Qqls~tvy~vg~~~v~t~li~L 68 (101)
T KOG4112|consen 47 QQLSVTVYIVGAGFVFTLLITL 68 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4577899999999999887654
No 20
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.02 E-value=2.6e+02 Score=27.94 Aligned_cols=24 Identities=13% Similarity=-0.085 Sum_probs=14.0
Q ss_pred cccccccceehhHHHHHHHHHHHH
Q 040222 181 DSFDRYREYRYCLSVNVIAFVYSG 204 (262)
Q Consensus 181 a~Fsd~~AFrYLVaanaIa~~YSl 204 (262)
.=|..+.+++|++.+-+++++=.+
T Consensus 218 vyY~sig~~gfl~~IlvLaIvRlI 241 (372)
T KOG2927|consen 218 VYYLSIGAGGFLAFILVLAIVRLI 241 (372)
T ss_pred eeeeecchhHHHHHHHHHHHHHHH
Confidence 344555577777666666655443
Done!