Query 040222
Match_columns 262
No_of_seqs 174 out of 358
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 21.6 1.4E+02 0.0048 28.1 5.9 65 183-254 222-287 (422)
2 1v54_J Cytochrome C oxidase po 19.3 51 0.0018 23.4 1.8 27 184-210 27-53 (59)
3 4aw6_A CAAX prenyl protease 1 14.7 1.9E+02 0.0067 27.8 5.2 67 192-260 124-192 (482)
4 2y69_J Cytochrome C oxidase po 14.4 77 0.0026 23.9 1.8 27 184-210 48-74 (80)
5 2iub_A CORA, divalent cation t 10.7 1.6E+02 0.0053 26.6 3.0 28 161-188 305-332 (363)
6 3qf4_A ABC transporter, ATP-bi 6.6 1.5E+03 0.05 21.5 8.1 6 154-159 30-35 (587)
7 2akh_X Protein-export membrane 6.3 7.5E+02 0.026 17.7 4.6 22 137-158 41-62 (77)
8 1bvp_1 Bluetongue virus coat p 6.0 3E+02 0.01 25.9 2.7 54 196-249 265-320 (349)
9 2l2t_A Receptor tyrosine-prote 5.4 7.3E+02 0.025 16.5 4.5 29 192-220 11-39 (44)
10 1jb0_X Photosystem I subunit P 5.2 3.4E+02 0.012 17.5 1.7 13 191-203 18-30 (35)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=21.63 E-value=1.4e+02 Score=28.13 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=32.5
Q ss_pred cccccce-ehhHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEechHHHHHHHHHHhhhhhhhhhh
Q 040222 183 FDRYREY-RYCLSVNVIAFVYSGFQAYDLAYYLAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDD 254 (262)
Q Consensus 183 Fsd~~AF-rYLVaanaIa~~YSllQl~~~iy~L~~gr~l~~~~~~awf~FigDQVlAYLLlSAASAAAaivdd 254 (262)
+..+..| +|++.+-+..++|.++......+ + .|+.. ..++.-+.+-.+.-+..++++|+..+.-+
T Consensus 222 ~~~l~~l~~~i~~~~~~~~i~~~vv~~~~~~-~-~~~np-----~~~~k~~~~a~~~Af~T~SS~AtLPv~m~ 287 (422)
T 2nwl_A 222 VHVVGELAKVTAAVYVGLTLQILLVYFVLLK-I-YGIDP-----ISFIKHAKDAMLTAFVTRSSSGTLPVTMR 287 (422)
T ss_dssp GGCCTHHHHHHHHHHHHHHHHHHHTHHHHHH-H-TTCCH-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HCCCH-----HHHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence 3344444 34555555555666666665444 3 34321 12333445555555555555555555544
No 2
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=19.27 E-value=51 Score=23.37 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=19.6
Q ss_pred ccccceehhHHHHHHHHHHHHHHHHHH
Q 040222 184 DRYREYRYCLSVNVIAFVYSGFQAYDL 210 (262)
Q Consensus 184 sd~~AFrYLVaanaIa~~YSllQl~~~ 210 (262)
+|.--|++++++.+++.+|++..++..
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~~ 53 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGWA 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556888888888888888777654
No 3
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=14.70 E-value=1.9e+02 Score=27.84 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcCCcccccccccceEEechHHHHHHHHHHhhhhhhhhhhhhhccC
Q 040222 192 CLSVNVIAFVYSGFQAYDLAYY--LAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAATRVDDWQSNWG 260 (262)
Q Consensus 192 LVaanaIa~~YSllQl~~~iy~--L~~gr~l~~~~~~awf~FigDQVlAYLLlSAASAAAaivdd~~s~wg 260 (262)
++.+.++..+-+++.+.+++|. ++-.+.-.|... +-.|+.|++-.+++......-...+-.|.-+|+
T Consensus 124 ~~f~~~~~l~~~l~~LP~~~Y~tfvle~~~Gfnk~t--~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~ 192 (482)
T 4aw6_A 124 LVFLLLATLFSALAGLPWSLYNTFVIEEKHGFNQQT--LGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIG 192 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCBCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHheeehhhcCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555666677788888885 233344344332 223779999888887766655443334444443
No 4
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=14.37 E-value=77 Score=23.87 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=18.2
Q ss_pred ccccceehhHHHHHHHHHHHHHHHHHH
Q 040222 184 DRYREYRYCLSVNVIAFVYSGFQAYDL 210 (262)
Q Consensus 184 sd~~AFrYLVaanaIa~~YSllQl~~~ 210 (262)
+|+--|.|++++.+++.+|++..++..
T Consensus 48 sd~~Ly~~t~~l~~~G~~~~ly~l~~~ 74 (80)
T 2y69_J 48 TDNILYRVTMTLCLGGTLYSLYCLGWA 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777776553
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=10.68 E-value=1.6e+02 Score=26.62 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcCCCCccccccccccc
Q 040222 161 VLSLISFSVMAADKTQGWSGDSFDRYRE 188 (262)
Q Consensus 161 vfslaSl~VMaTnkqt~~~~a~Fsd~~A 188 (262)
.|+++|+++|.-+=-++..|.+|.++++
T Consensus 305 ~LTiit~IflP~T~IaGiyGMNf~~mPe 332 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGMNFEYMPE 332 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--------
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCc
Confidence 4556666666555445555677776664
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=6.64 E-value=1.5e+03 Score=21.55 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.1
Q ss_pred HHHHHH
Q 040222 154 GFRLIE 159 (262)
Q Consensus 154 vLRlla 159 (262)
++=++.
T Consensus 30 ~~~~~~ 35 (587)
T 3qf4_A 30 LFMVVE 35 (587)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 7
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=6.29 E-value=7.5e+02 Score=17.72 Aligned_cols=22 Identities=5% Similarity=-0.072 Sum_probs=13.1
Q ss_pred hhhhhhhHHHhhhhHHHHHHHH
Q 040222 137 SILKRSKFEARLMFANLGFRLI 158 (262)
Q Consensus 137 ~~~~r~kre~~l~ia~LvLRll 158 (262)
+...++..|+.+.+...+|=++
T Consensus 41 ~~fg~~g~~~~L~k~T~~la~~ 62 (77)
T 2akh_X 41 TLFGSSGSGNFMTRMTALLATL 62 (77)
T ss_pred cccccccHHHHHHHHHHHHHHH
Confidence 4444445677777776665444
No 8
>1bvp_1 Bluetongue virus coat protein VP7; trimer, viral protein; 2.60A {Bluetongue virus} SCOP: a.115.1.1 b.19.1.1 PDB: 2btv_P
Probab=6.00 E-value=3e+02 Score=25.91 Aligned_cols=54 Identities=19% Similarity=-0.054 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HhcCCcccccccccceEEechHHHHHHHHHHhhhhh
Q 040222 196 NVIAFVYSGFQAYDLAYY--LAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAA 249 (262)
Q Consensus 196 naIa~~YSllQl~~~iy~--L~~gr~l~~~~~~awf~FigDQVlAYLLlSAASAAA 249 (262)
.=|..+||...-...... |+..-.+.++.--..=.+--+|+++++|+|.-+=+-
T Consensus 265 adi~~~YSy~d~~WhaLRs~il~~~~LP~~~pPi~Pp~~r~~~LalaL~srLaDvY 320 (349)
T 1bvp_1 265 AEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVY 320 (349)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHTTSSSCSSSCCSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhheeecCchHHHHHHHHHHhcCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 346677887665544432 344444444433334446689999999999876443
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.43 E-value=7.3e+02 Score=16.47 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 040222 192 CLSVNVIAFVYSGFQAYDLAYYLAKGKHV 220 (262)
Q Consensus 192 LVaanaIa~~YSllQl~~~iy~L~~gr~l 220 (262)
.+++.+++.+--++-+...++.+.++++.
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 36666676666655555655555666654
No 10
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=5.16 E-value=3.4e+02 Score=17.53 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHH
Q 040222 191 YCLSVNVIAFVYS 203 (262)
Q Consensus 191 YLVaanaIa~~YS 203 (262)
.|+++|-++++|=
T Consensus 18 llLaINflVAayY 30 (35)
T 1jb0_X 18 LLLAINFLVAAYY 30 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677777777764
Done!