Query 040222
Match_columns 262
No_of_seqs 174 out of 358
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040222.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040222hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nwwa1 f.49.1.1 (A:12-416) Pr 11.2 1.8E+02 0.013 24.4 5.8 24 231-254 253-276 (405)
2 d1rzsa_ a.35.1.2 (A:) cro p22 9.3 67 0.0049 21.5 1.7 28 235-262 5-33 (61)
3 d1ppje2 f.23.12.1 (E:1-69) Iro 7.7 1.5E+02 0.011 19.9 3.1 27 234-260 32-63 (69)
4 d1bvp11 a.115.1.1 (1:1-120,1:2 5.9 1.5E+02 0.011 24.0 2.7 64 181-249 121-186 (215)
5 d1jb0x_ f.23.20.1 (X:) Subunit 5.8 1.7E+02 0.012 16.5 2.1 13 192-204 13-25 (29)
6 d1jb0l_ f.31.1.1 (L:) Photosys 4.2 5.2E+02 0.038 19.6 4.7 37 181-217 112-148 (151)
7 d1v54j_ f.23.4.1 (J:) Mitochon 3.1 2.8E+02 0.021 18.0 1.8 19 189-207 32-50 (58)
8 d1wjpa2 g.37.1.1 (A:43-66) Zin 2.9 1.8E+02 0.013 16.1 0.5 10 35-44 4-13 (26)
9 d2oi6a2 c.68.1.5 (A:4-251) N-a 2.3 3.8E+02 0.027 19.1 2.0 20 77-96 1-21 (248)
10 d1tada1 a.66.1.1 (A:57-177) Tr 2.3 4.3E+02 0.031 18.2 2.2 25 186-210 6-30 (121)
No 1
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=11.16 E-value=1.8e+02 Score=24.45 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=11.7
Q ss_pred EechHHHHHHHHHHhhhhhhhhhh
Q 040222 231 FFMDQILAYLLISASSAAATRVDD 254 (262)
Q Consensus 231 FigDQVlAYLLlSAASAAAaivdd 254 (262)
-..+..+.-+..++++|+..+.-+
T Consensus 253 ~~~~~~~~Af~T~SS~atlP~~~~ 276 (405)
T d2nwwa1 253 HAKDAMLTAFVTRSSSGTLPVTMR 276 (405)
T ss_dssp HHHHHHHHHHHHCCTGGGHHHHHH
T ss_pred hccchhheeeeccccccccHHHHH
Confidence 345555555554444554444433
No 2
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=9.27 E-value=67 Score=21.50 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=20.8
Q ss_pred HHHHHH-HHHHhhhhhhhhhhhhhccCCC
Q 040222 235 QILAYL-LISASSAAATRVDDWQSNWGKD 262 (262)
Q Consensus 235 QVlAYL-LlSAASAAAaivdd~~s~wg~d 262 (262)
-|+.|. -.+-.+.+.+|...-++.||++
T Consensus 5 dvi~~FG~~~k~A~algis~~AVsqWGe~ 33 (61)
T d1rzsa_ 5 DVIDHFGTQRAVAKALGISDAAVSQWKEV 33 (61)
T ss_dssp HHHHHHSSHHHHHHHHTCCHHHHHHCCSB
T ss_pred HHHHHhCCHHHHHHHhCCCHHHHHHHhcc
Confidence 344444 5667788889999999999974
No 3
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.75 E-value=1.5e+02 Score=19.93 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhhhhh-----hhhhhhhhccC
Q 040222 234 DQILAYLLISASSAAA-----TRVDDWQSNWG 260 (262)
Q Consensus 234 DQVlAYLLlSAASAAA-----aivdd~~s~wg 260 (262)
...++||+.++++++. .++.+..++++
T Consensus 32 Rk~fsYl~~g~~~v~~ay~AK~~V~~fvssmS 63 (69)
T d1ppje2 32 RKGFSYLVTATTTVGVAYAAKNVVSQFVSSMS 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hceehhhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 3678888877766554 45555555544
No 4
>d1bvp11 a.115.1.1 (1:1-120,1:255-349) BTV vp7 {Bluetongue virus [TaxId: 40051]}
Probab=5.94 E-value=1.5e+02 Score=24.05 Aligned_cols=64 Identities=17% Similarity=0.030 Sum_probs=40.5
Q ss_pred cccccccceehhHHHHHHHHHHHHHHHHHHHHH--HhcCCcccccccccceEEechHHHHHHHHHHhhhhh
Q 040222 181 DSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYY--LAKGKHVIRYHLRQPFDFFMDQILAYLLISASSAAA 249 (262)
Q Consensus 181 a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~--L~~gr~l~~~~~~awf~FigDQVlAYLLlSAASAAA 249 (262)
-.++.|++++ .=|..+||+..-...... |+..-.+.+..--..-.+--+|+++++|+|+-+=+-
T Consensus 121 ~t~~~yP~m~-----~di~~~YSY~~~~WHaLRs~ll~~~~Lp~~~pPi~pp~~r~~vLALaL~srLaDvY 186 (215)
T d1bvp11 121 KTLNQYPALT-----AEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVY 186 (215)
T ss_dssp CCTTSSTTHH-----HHHHHHHCCSSHHHHHHHHHHHTTSSSCSSSCCSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchh-----HHHHHhhhccCchHHHHHHHHHHHcCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 4677777764 334578988766554443 444444544444344456789999999999876543
No 5
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=5.80 E-value=1.7e+02 Score=16.51 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHH
Q 040222 192 CLSVNVIAFVYSG 204 (262)
Q Consensus 192 LVaanaIa~~YSl 204 (262)
|+++|-|+++|-+
T Consensus 13 llainflvaayyf 25 (29)
T d1jb0x_ 13 LLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666643
No 6
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=4.18 E-value=5.2e+02 Score=19.61 Aligned_cols=37 Identities=3% Similarity=0.116 Sum_probs=27.8
Q ss_pred cccccccceehhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040222 181 DSFDRYREYRYCLSVNVIAFVYSGFQAYDLAYYLAKG 217 (262)
Q Consensus 181 a~Fsd~~AFrYLVaanaIa~~YSllQl~~~iy~L~~g 217 (262)
..|+++++--++=+..+.+++|-+++-+..+-.+.+|
T Consensus 112 ~gWs~F~~GF~~Gg~GGa~fAy~Ll~n~~~~d~i~~g 148 (151)
T d1jb0l_ 112 EGWSQFTAGFFVGAMGSAFVAFFLLENFLVVDGIMTG 148 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred ccHHHhhchhhhccccHHHHHHHHHcchHHHHHHHHH
Confidence 5788888888888888899999998865544444443
No 7
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.06 E-value=2.8e+02 Score=17.98 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.2
Q ss_pred eehhHHHHHHHHHHHHHHH
Q 040222 189 YRYCLSVNVIAFVYSGFQA 207 (262)
Q Consensus 189 FrYLVaanaIa~~YSllQl 207 (262)
||.-.+..+++.+||+..+
T Consensus 32 Yr~Tm~L~~~G~~~s~~~l 50 (58)
T d1v54j_ 32 YRVTMTLCLGGTLYSLYCL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444544433
No 8
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.89 E-value=1.8e+02 Score=16.12 Aligned_cols=10 Identities=50% Similarity=0.846 Sum_probs=6.0
Q ss_pred CCCCCcccCC
Q 040222 35 PHSPHRFHSP 44 (262)
Q Consensus 35 ~~~~~~~~s~ 44 (262)
|--.+||-||
T Consensus 4 pycslrf~sp 13 (26)
T d1wjpa2 4 PYCSLRFFSP 13 (26)
T ss_dssp TTTCCCBSSH
T ss_pred CcceeeeCCH
Confidence 3445677666
No 9
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.34 E-value=3.8e+02 Score=19.14 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=13.5
Q ss_pred CcceEEEe-eccccccCCCCC
Q 040222 77 NSKAIVAV-ADKFTQSSPMLE 96 (262)
Q Consensus 77 ~~~~~~~~-~~~~~~~~~~~~ 96 (262)
|+|.+|+. +++.|-+.|..|
T Consensus 1 ~~MkvIILAAG~GtRm~~~~P 21 (248)
T d2oi6a2 1 NAMSVVILAAGKGTRMYSDLP 21 (248)
T ss_dssp CCEEEEEECCSCCGGGCCSSC
T ss_pred CCceEEEECCCCCCCCCCCCC
Confidence 67776665 788877766443
No 10
>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.25 E-value=4.3e+02 Score=18.20 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=21.2
Q ss_pred ccceehhHHHHHHHHHHHHHHHHHH
Q 040222 186 YREYRYCLSVNVIAFVYSGFQAYDL 210 (262)
Q Consensus 186 ~~AFrYLVaanaIa~~YSllQl~~~ 210 (262)
...|+.+|..|+|.+...++.++..
T Consensus 6 ~~~~~~~I~~Nii~~m~~li~a~~~ 30 (121)
T d1tada1 6 CLEFIAIIYGNTLQSILAIVRAMTT 30 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988654
Done!