BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040226
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SIP7|RS31_ARATH 40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=1
SV=1
Length = 250
Score = 228 bits (582), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/134 (84%), Positives = 121/134 (90%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFVMESGAKGC 134
>sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1
SV=1
Length = 248
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/134 (83%), Positives = 121/134 (90%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MATQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFVMESGAKGC 134
>sp|Q9M339|RS32_ARATH 40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1
SV=1
Length = 249
Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/134 (83%), Positives = 120/134 (89%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M TQISKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLG
Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFVMESGAKGC 134
>sp|P62909|RS3_RAT 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1
Length = 243
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|P62908|RS3_MOUSE 40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1
Length = 243
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|E2RH47|RS3_CANFA 40S ribosomal protein S3 OS=Canis familiaris GN=RPS3 PE=1 SV=1
Length = 243
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|Q0Z8U2|RS3_PIG 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1
Length = 243
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2
Length = 243
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|Q3T169|RS3_BOVIN 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1
Length = 243
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|P02350|RS31_XENLA 40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-a PE=2 SV=2
Length = 246
Score = 212 bits (540), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|P79891|RS3_AMBME 40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1
Length = 253
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGSKGC 134
>sp|Q5R465|RS3_PONAB 40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1
Length = 243
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/134 (79%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAE+V RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|P47835|RS32_XENLA 40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-b PE=2 SV=1
Length = 246
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 105/134 (78%), Positives = 113/134 (84%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLG
Sbjct: 1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1
Length = 245
Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/134 (78%), Positives = 112/134 (83%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
EKGRRIRELT+VVQKRF FP SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRR
Sbjct: 61 EKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVLRFIMESGAKGC 134
>sp|P48153|RS3_MANSE 40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1
Length = 243
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/130 (78%), Positives = 108/130 (83%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGR 65
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYILIISQ 124
RIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRR + +
Sbjct: 66 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 125
Query: 125 ILSNKALRSC 134
+ R C
Sbjct: 126 FIMESGARGC 135
>sp|O60128|RS3_SCHPO 40S ribosomal protein S3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rps3 PE=1 SV=1
Length = 249
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/116 (82%), Positives = 105/116 (90%)
Query: 2 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGE 61
A ISKKRKFVADGVF+AELNE TREL+E+GYSG EVRVTP R+EIIIRAT TQ+VLGE
Sbjct: 4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGE 63
Query: 62 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
KGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRR
Sbjct: 64 KGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRR 119
>sp|Q06559|RS3_DROME 40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1
SV=1
Length = 246
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/130 (73%), Positives = 105/130 (80%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYILIISQ 124
RIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRR + +
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLR 126
Query: 125 ILSNKALRSC 134
+ + C
Sbjct: 127 YIMESGAKGC 136
>sp|P48152|RS3_CAEEL 40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=3
SV=1
Length = 247
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/113 (76%), Positives = 98/113 (86%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++KK+K V G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
RI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRR
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRR 119
>sp|P05750|RS3_YEAST 40S ribosomal protein S3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS3 PE=1 SV=5
Length = 240
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 105/134 (78%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M ISKKRK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RR
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 121 IISQILSNKALRSC 134
+ + + + C
Sbjct: 121 GVVRYVMESGAKGC 134
>sp|P90526|RS3_DICDI 40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=1
SV=1
Length = 218
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 99/132 (75%), Gaps = 1/132 (0%)
Query: 4 QISKKRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPVRTEIIIRATRTQNVLGEK 62
QISKKRKFVADGVF AELNE+ TRE +D GYSGVE++ +P TEIIIRA++TQ V+G
Sbjct: 6 QISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPN 65
Query: 63 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYILII 122
RRI+EL S+VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ I
Sbjct: 66 ARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAI 125
Query: 123 SQILSNKALRSC 134
+ + + C
Sbjct: 126 VHQIMTRGAKGC 137
>sp|Q8SQM3|RS3_ENCCU 40S ribosomal protein S3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS3 PE=1 SV=1
Length = 228
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 68/110 (61%)
Query: 10 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIREL 69
+F+ +G+ AEL E + L +G+S +E+R+ +II++ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 70 TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYI 119
+ +R + P+ SVE+ EKV+ +GLCA+ QA +R K+LGG+ RR +
Sbjct: 81 QHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAV 130
>sp|C5A280|RS3_THEGJ 30S ribosomal protein S3 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rps3 PE=3 SV=1
Length = 209
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
ELT +++++F +E+ E++ N L A QA L L G+ RR
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRR 111
>sp|Q5JDH5|RS3_PYRKO 30S ribosomal protein S3 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps3 PE=3 SV=1
Length = 209
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++ I A V+G GRRIR
Sbjct: 4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
ELT +++K+F +E+ E++ N L A QA L L G+ RR
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRR 111
>sp|B6YSL9|RS3_THEON 30S ribosomal protein S3 OS=Thermococcus onnurineus (strain NA1)
GN=rps3 PE=3 SV=1
Length = 208
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +GV ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQA 102
ELT +++++F +E+ E++ N L A QA
Sbjct: 64 ELTRILERQFGLENPQIEV--EEIKNPYLNAKVQA 96
>sp|P54034|RS3_METJA 30S ribosomal protein S3 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps3 PE=3 SV=1
Length = 208
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 18/146 (12%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R FV + V ++E +EL++ GYS ++R TP+ T+III A + V+G +G RIR
Sbjct: 3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIR 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCA------IAQA--ESLRYKLLGGLAVRR-- 117
ELT + K F + +++ + V N L A +AQ+ L ++ +G AVRR
Sbjct: 63 ELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVM 120
Query: 118 ------YILIISQILSNKALRSCGLM 137
I+IIS L+ + R+ M
Sbjct: 121 NAGAKGVIVIISGKLTGERARTEKFM 146
>sp|Q3IMY2|RS3_NATPD 30S ribosomal protein S3 OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=rps3 PE=3 SV=1
Length = 305
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ DG+ +++E + EL+ GY G+EV TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRY-ILIIS 123
IR++T+ +++ F + V++ ++V+ L A A+ L L G R+ I
Sbjct: 61 NIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 124 QILSNKAL 131
+I+ + AL
Sbjct: 119 RIMESGAL 126
>sp|C6A165|RS3_THESM 30S ribosomal protein S3 OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=rps3 PE=3 SV=1
Length = 207
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ +G+ ++E L +EL GY G++++ TP+ T+++I R V+G GR+IR
Sbjct: 4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESL 105
ELT ++++RF +E+ E++ N A QA L
Sbjct: 64 ELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRL 99
>sp|Q8U004|RS3_PYRFU 30S ribosomal protein S3 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps3 PE=1 SV=1
Length = 210
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQA 102
ELT +++K+F +E+ E++ N L A QA
Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQA 96
>sp|P20281|RS3_HALMA 30S ribosomal protein S3 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps3 PE=3
SV=2
Length = 304
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ +++F+ DG+ +++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRY-ILIIS 123
IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+ I
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 124 QILSNKAL 131
+I+ + AL
Sbjct: 119 RIMESGAL 126
>sp|O59424|RS3_PYRHO 30S ribosomal protein S3 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps3 PE=3 SV=1
Length = 210
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYILIISQILS 127
ELT +++++F +++ +++ N L A QA + L G+ RR + +
Sbjct: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIM 121
Query: 128 NKALRSC 134
N R
Sbjct: 122 NNGARGV 128
>sp|Q9V1U1|RS3_PYRAB 30S ribosomal protein S3 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps3 PE=3 SV=1
Length = 210
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GRRIR
Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQA 102
ELT +++++F +++ +++ N L A QA
Sbjct: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQA 96
>sp|A2SPK9|RS3_METLZ 30S ribosomal protein S3 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps3 PE=3 SV=1
Length = 231
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFVADGV + + L +EL GY G+++ TPV T++ I A + V+G+ G+ +R
Sbjct: 4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRY-ILIISQIL 126
+LT+ + + VE+ ++V N L A AE L L G R+ +I +++
Sbjct: 64 QLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVM 121
Query: 127 SNKAL 131
+ AL
Sbjct: 122 DSGAL 126
>sp|A3CT03|RS3_METMJ 30S ribosomal protein S3 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps3 PE=3 SV=1
Length = 234
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KF+ DGV + + LT+EL GY G+++ TP+ T++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
+LT + + VE+ ++V N A AE L L G R+
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRK 111
>sp|Q46GA1|RS3_METBF 30S ribosomal protein S3 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps3 PE=3 SV=1
Length = 311
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFV DG A ++E +L GY G+E+ TP+ T+I+I + + V+G+ G+ IR
Sbjct: 4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
+LT V R+ EN ++ A++V L A A L + G R+
Sbjct: 64 KLTRDVAARYNL-ENP-QIDAQEVKKPELNAQMMASRLAASIERGWYFRK 111
>sp|Q18GF5|RS3_HALWD 30S ribosomal protein S3 OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps3 PE=3 SV=1
Length = 323
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ +G+ ++++E EL GY G++V TP+ T+I+++A + V+G+ G+
Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRY-ILIIS 123
IR++T ++ RF + +++ ++V+ L A A+ L L G R+ I
Sbjct: 61 NIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118
Query: 124 QILSNKAL 131
+I+ + AL
Sbjct: 119 RIIESGAL 126
>sp|P15009|RS3_HALSA 30S ribosomal protein S3 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps3 PE=3 SV=3
Length = 302
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 5 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR 64
++ + +F+ G+ ++++E ELA GY G+E+ TP+ +I+++A + V+G+ G+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 65 RIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRY-ILIIS 123
IR++T+ +++RF + +++ ++V L A A+ L L G R+ I
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTID 118
Query: 124 QILSNKAL 131
+I+ + AL
Sbjct: 119 RIMESGAL 126
>sp|Q8TRU1|RS3_METAC 30S ribosomal protein S3 OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps3 PE=3
SV=1
Length = 318
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E +L+ GY G+E+ TP+ T+I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVE 85
+LT V ++ ++
Sbjct: 64 KLTRDVANKYSLENPQID 81
>sp|Q12ZU5|RS3_METBU 30S ribosomal protein S3 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps3 PE=3 SV=1
Length = 304
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E ++L+ GY G+++ TP+ T+I + A + V+G+ G+ IR
Sbjct: 4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
+LT V + + ++ ++ A++V L A A L + G R+
Sbjct: 64 KLTRDVDRLYDL--DNPQIDAQEVKRPELNAQMMASRLASSIERGWYFRK 111
>sp|Q8PV44|RS3_METMA 30S ribosomal protein S3 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps3 PE=3 SV=1
Length = 307
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV DG A ++E +L GY G+E+ TP+ T+III + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
+LT V ++ EN ++ A++V L A A L + G R+
Sbjct: 64 KLTRDVATKYNL-ENP-QIDAQEVKKPELNAQMMASRLAASIERGWYFRK 111
>sp|A5UL83|RS3_METS3 30S ribosomal protein S3 OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rps3 PE=3 SV=1
Length = 250
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G++V++TP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVR 62
Query: 68 ELTSVVQKRFKFPENSVEL 86
+T+ ++ F +E+
Sbjct: 63 AITNTLKNDFGLDNPQIEV 81
>sp|O26116|RS3_METTH 30S ribosomal protein S3 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rps3 PE=3 SV=1
Length = 258
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++ FV +G+ ++E L +EL GY G++V+VTP+ T +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 68 ELTSVVQKRFKFPENSVEL 86
+T ++ +F VE+
Sbjct: 63 AITQKLKNKFDLENPQVEV 81
>sp|A0B9W4|RS3_METTP 30S ribosomal protein S3 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps3 PE=3 SV=1
Length = 276
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV +G A ++E L +EL GY G+ + TP+ T+I + A + V+G+ G+ IR
Sbjct: 4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
+LT +++RF+ ++ ++ + V L A A L L G R+
Sbjct: 64 KLTRDLERRFRL--DNPQIDVQDVGKSDLNARVVANRLASSLEHGWYFRK 111
>sp|Q9YF78|RS3_AERPE 30S ribosomal protein S3 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps3 PE=3
SV=1
Length = 246
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLG 60
M T++ K F+ G+ +++E L + E GYS V+V T + T I I A R ++G
Sbjct: 1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIG 58
Query: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL 120
+G IR L V Q F P + + E+ N L A QA + + G+ RR
Sbjct: 59 RRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAF 116
Query: 121 -IISQILSNKAL 131
I++I+SN AL
Sbjct: 117 AAINRIMSNGAL 128
>sp|Q2FT39|RS3_METHJ 30S ribosomal protein S3 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps3 PE=3 SV=1
Length = 237
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKFVADGV + L EL GY G+++ TP+ T++ I A + V+G+ G+ +R
Sbjct: 4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVR 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
LT + + +E+ ++V+N L A AE L L G R+
Sbjct: 64 TLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRK 111
>sp|A7I5P5|RS3_METB6 30S ribosomal protein S3 OS=Methanoregula boonei (strain 6A8)
GN=rps3 PE=3 SV=1
Length = 231
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+RKF+A+G A + + LT+EL G+ G+++ TP+ T++ I A + V+G+ G+ +
Sbjct: 4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVH 63
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
+LT + + + +E+ ++V N A AE L L G R+
Sbjct: 64 QLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRK 111
>sp|Q9UXA0|RS3_SULSO 30S ribosomal protein S3 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps3 PE=3 SV=1
Length = 229
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
KR F+ + +++E L ++ Y+GVEV TP+ T +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYILI 121
+L + +K F EN ++ V N L A A L L G RR I
Sbjct: 65 QLAQIFEKVFGL-ENP-QITITNVENPELNARVMAFRLAIALEKGYHFRRAAFI 116
>sp|A6UWU3|RS3_META3 30S ribosomal protein S3 OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rps3 PE=3 SV=1
Length = 208
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
+R F+ + V ++E L +L GYS ++V+ TP+ T I + A + V+G KG+ ++
Sbjct: 3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR 117
ELT + ++ N ++ +++ + L A A+ + L G+ RR
Sbjct: 63 ELTETIATKYGV--NKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRR 110
>sp|Q0W1Y3|RS3_UNCMA 30S ribosomal protein S3 OS=Uncultured methanogenic archaeon RC-I
GN=rps3 PE=3 SV=1
Length = 279
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
++KFV +G A ++E +L GY G+E+ TP+ T+I ++A + ++G+ G+ IR
Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIR 63
Query: 68 ELTSVVQKRFKFPENSVEL 86
T + RFK +++
Sbjct: 64 RYTKEMDMRFKMDNPQIDV 82
>sp|Q6L1C1|RS3_PICTO 30S ribosomal protein S3 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps3
PE=3 SV=1
Length = 217
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRI 66
K+++FV D + ++E L +E G+ G+E++ TP T I + R V+G G +I
Sbjct: 2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKI 61
Query: 67 RELTSVVQKRFKFPENSVELYAEKVNNRGL--------CAIAQAESLRYKLLGGLAVRRY 118
+E+T ++KRF +E+ ++VN L A++ + Y+ G ++R+
Sbjct: 62 KEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKM 119
Query: 119 I 119
I
Sbjct: 120 I 120
>sp|Q4JB46|RS3_SULAC 30S ribosomal protein S3 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps3 PE=3 SV=1
Length = 231
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIR 67
KR F+ ++E L ++ Y+GVE+ TP+ T +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 68 ELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYILI-ISQIL 126
+L V++K F + + A N L A A L L G RR I I +I+
Sbjct: 65 QLAQVLEKFFGLENPQITVTA--AENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122
Query: 127 SNKAL 131
S+ A+
Sbjct: 123 SSGAV 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,651,240
Number of Sequences: 539616
Number of extensions: 1373106
Number of successful extensions: 4462
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 4277
Number of HSP's gapped (non-prelim): 290
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)