Query 040226
Match_columns 137
No_of_seqs 105 out of 1026
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:47:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_D RP13, YS3, 40S ribosoma 100.0 8.1E-44 2.8E-48 283.3 13.1 135 1-136 1-136 (240)
2 3iz6_B 40S ribosomal protein S 100.0 4.7E-45 1.6E-49 288.8 5.3 136 1-137 1-137 (227)
3 2zkq_c 40S ribosomal protein S 100.0 4.6E-44 1.6E-48 285.4 9.3 135 1-136 1-136 (243)
4 3j20_C 30S ribosomal protein S 100.0 1.4E-42 4.7E-47 272.2 12.5 128 6-136 2-130 (210)
5 2xzm_C KH domain containing pr 100.0 1.1E-41 3.6E-46 271.9 12.5 132 4-136 7-139 (243)
6 3r8n_C 30S ribosomal protein S 100.0 1.1E-39 3.9E-44 255.1 7.2 125 8-136 25-150 (206)
7 3i1m_C 30S ribosomal protein S 100.0 5.1E-39 1.7E-43 255.2 9.1 126 8-137 26-152 (233)
8 2vqe_C 30S ribosomal protein S 100.0 6.3E-38 2.1E-42 249.8 9.7 124 9-136 27-151 (239)
9 3bbn_C Ribosomal protein S3; s 100.0 2.7E-38 9.2E-43 249.2 5.2 127 9-136 27-162 (218)
10 1wh9_A 40S ribosomal protein S 100.0 1.1E-28 3.9E-33 171.2 7.8 87 13-99 4-90 (92)
11 2pt7_G HP1451, hypothetical pr 97.0 0.0012 4E-08 49.0 5.8 60 19-78 5-67 (152)
12 3gku_A Probable RNA-binding pr 95.1 0.062 2.1E-06 42.0 7.0 59 20-78 65-126 (225)
13 1ec6_A RNA-binding protein NOV 91.6 0.24 8.3E-06 32.3 4.3 67 45-119 4-82 (87)
14 1ega_A Protein (GTP-binding pr 88.5 1.8 6.1E-05 33.9 7.7 71 16-89 197-280 (301)
15 3iev_A GTP-binding protein ERA 88.4 1.5 5.1E-05 34.4 7.2 86 11-99 199-299 (308)
16 2cxc_A NUSA; transcription ter 87.1 0.62 2.1E-05 33.9 3.9 47 27-73 19-65 (144)
17 1dtj_A RNA-binding neurooncolo 84.1 0.37 1.3E-05 30.3 1.3 28 45-72 4-31 (76)
18 2opv_A KHSRP protein; KH domai 84.1 0.3 1E-05 31.7 0.9 29 45-73 15-43 (85)
19 2axy_A Poly(RC)-binding protei 82.8 0.32 1.1E-05 30.8 0.6 29 44-72 5-33 (73)
20 1zzk_A Heterogeneous nuclear r 82.8 0.69 2.4E-05 29.7 2.2 28 45-72 8-35 (82)
21 1we8_A Tudor and KH domain con 82.1 0.38 1.3E-05 32.5 0.8 31 43-73 14-44 (104)
22 1wvn_A Poly(RC)-binding protei 81.7 0.55 1.9E-05 30.2 1.4 28 45-72 7-34 (82)
23 1wf3_A GTP-binding protein; GT 80.9 3.1 0.00011 32.6 5.9 56 45-101 229-291 (301)
24 1x4m_A FAR upstream element bi 80.9 0.45 1.5E-05 31.5 0.8 30 45-74 16-45 (94)
25 2hh3_A KH-type splicing regula 80.8 2.3 7.8E-05 28.9 4.4 31 43-73 10-40 (106)
26 2hh2_A KH-type splicing regula 80.8 0.95 3.3E-05 30.7 2.4 28 45-72 8-35 (107)
27 2p2r_A Poly(RC)-binding protei 80.1 0.44 1.5E-05 30.2 0.5 28 45-72 6-33 (76)
28 1vig_A Vigilin; RNA-binding pr 79.4 0.66 2.3E-05 29.2 1.2 28 45-72 6-33 (71)
29 3krm_A Insulin-like growth fac 79.2 0.64 2.2E-05 33.2 1.2 32 43-74 2-33 (163)
30 1x4n_A FAR upstream element bi 77.2 0.66 2.2E-05 30.6 0.7 30 43-72 14-43 (92)
31 2dgr_A Ring finger and KH doma 75.7 0.64 2.2E-05 30.4 0.3 28 45-72 11-38 (83)
32 3af5_A Putative uncharacterize 74.9 3.2 0.00011 36.3 4.6 79 19-110 83-162 (651)
33 1j5k_A Heterogeneous nuclear r 74.8 0.84 2.9E-05 29.9 0.7 28 45-72 15-42 (89)
34 2ycb_A Beta-CAsp RNAse, cleava 74.7 2.6 8.8E-05 36.7 3.9 76 19-107 74-150 (636)
35 2cxc_A NUSA; transcription ter 73.9 2.7 9.3E-05 30.4 3.3 58 21-78 78-137 (144)
36 2xr1_A Cleavage and polyadenyl 73.7 3 0.0001 36.4 4.1 77 19-108 78-155 (640)
37 2ctl_A Vigilin; K homology typ 73.0 1.1 3.9E-05 29.9 1.0 31 44-74 17-47 (97)
38 2cte_A Vigilin; K homology typ 71.9 1.1 3.9E-05 29.6 0.8 30 45-74 18-47 (94)
39 2cpq_A FragIle X mental retard 69.3 0.56 1.9E-05 31.6 -1.2 62 46-114 17-83 (91)
40 2ctk_A Vigilin; K homology typ 69.1 0.87 3E-05 30.9 -0.3 30 43-72 16-45 (104)
41 3af5_A Putative uncharacterize 67.1 3.6 0.00012 35.9 3.2 54 19-77 16-70 (651)
42 2ctm_A Vigilin; K homology typ 63.8 2.2 7.6E-05 28.3 1.0 31 44-74 17-47 (95)
43 2anr_A Neuro-oncological ventr 62.9 2.1 7E-05 30.9 0.7 30 45-74 7-36 (178)
44 2jzx_A Poly(RC)-binding protei 62.8 1.6 5.4E-05 30.9 0.0 30 44-73 5-34 (160)
45 3h90_A Ferrous-iron efflux pum 62.7 27 0.00092 26.8 7.2 75 15-91 205-280 (283)
46 2asb_A Transcription elongatio 61.5 14 0.00049 29.0 5.4 61 20-86 84-153 (251)
47 2jvz_A KH type-splicing, FAR u 61.3 2.4 8.3E-05 29.9 0.8 27 46-72 4-30 (164)
48 3krm_A Insulin-like growth fac 59.7 3.3 0.00011 29.3 1.3 29 45-73 86-114 (163)
49 1ib8_A Conserved protein SP14. 59.5 47 0.0016 24.0 7.9 74 18-98 11-91 (164)
50 2anr_A Neuro-oncological ventr 58.8 2.7 9.2E-05 30.3 0.7 29 44-72 104-132 (178)
51 2jvf_A De novo protein M7; tet 58.0 28 0.00095 22.7 5.4 64 37-110 10-74 (96)
52 1k0r_A NUSA; two component arr 57.7 17 0.00057 30.1 5.4 61 20-86 207-276 (366)
53 1j4w_A FUSE binding protein; s 57.3 4.1 0.00014 29.2 1.5 28 45-72 105-132 (174)
54 2jzx_A Poly(RC)-binding protei 56.4 2.8 9.5E-05 29.6 0.4 31 44-74 89-119 (160)
55 1j4w_A FUSE binding protein; s 55.5 3.3 0.00011 29.8 0.7 29 45-73 4-32 (174)
56 2ycb_A Beta-CAsp RNAse, cleava 53.5 6.8 0.00023 34.0 2.5 53 19-76 7-60 (636)
57 2xr1_A Cleavage and polyadenyl 51.7 6.3 0.00021 34.4 2.0 52 19-75 11-63 (640)
58 2jvz_A KH type-splicing, FAR u 50.3 3.3 0.00011 29.1 -0.0 27 46-72 93-119 (164)
59 3elg_A Uncharacterized peripla 50.2 22 0.00074 24.6 4.3 24 19-42 15-38 (128)
60 2asb_A Transcription elongatio 49.4 19 0.00064 28.3 4.2 59 21-86 160-219 (251)
61 1jo0_A Hypothetical protein HI 47.7 36 0.0012 22.7 5.0 52 51-109 16-70 (98)
62 1hh2_P NUSA, N utilization sub 45.1 24 0.00083 28.8 4.4 59 21-86 279-338 (344)
63 2qnd_A FMR1 protein; KH domain 44.3 8 0.00027 27.3 1.2 26 46-71 69-94 (144)
64 1rq8_A Conserved hypothetical 43.0 41 0.0014 22.8 4.6 52 51-109 15-69 (104)
65 2ctf_A Vigilin; K homology typ 43.0 6.8 0.00023 26.3 0.6 26 47-72 30-55 (102)
66 1k0r_A NUSA; two component arr 41.9 29 0.00098 28.7 4.4 60 21-87 283-343 (366)
67 2yqr_A KIAA0907 protein; struc 38.0 33 0.0011 23.7 3.6 49 56-111 31-98 (119)
68 3m20_A 4-oxalocrotonate tautom 37.9 26 0.0009 20.6 2.8 30 64-93 17-46 (62)
69 3j1z_P YIIP, cation efflux fam 36.9 50 0.0017 25.8 4.9 75 16-92 215-290 (306)
70 2ctj_A Vigilin; K homology typ 34.1 7.6 0.00026 25.7 -0.2 28 45-72 18-45 (95)
71 3gp2_B Calcium/calmodulin-depe 33.6 31 0.001 17.2 2.0 19 112-130 2-21 (22)
72 3m21_A Probable tautomerase HP 32.8 50 0.0017 19.5 3.5 30 65-94 22-51 (67)
73 3n89_A Defective in GERM LINE 32.5 6.3 0.00022 32.8 -1.0 21 55-75 41-63 (376)
74 2aal_A Malonate semialdehyde d 31.4 50 0.0017 22.2 3.7 51 41-93 62-112 (131)
75 1hh2_P NUSA, N utilization sub 29.7 1.1E+02 0.0037 24.9 5.9 55 20-74 203-266 (344)
76 3abf_A 4-oxalocrotonate tautom 29.4 78 0.0027 18.0 3.9 29 65-93 20-48 (64)
77 1ex7_A Guanylate kinase; subst 29.3 56 0.0019 23.7 3.8 26 53-78 1-26 (186)
78 1iv3_A 2-C-methyl-D-erythritol 28.0 1.3E+02 0.0044 21.8 5.5 40 45-89 93-132 (152)
79 2e3u_A PH-DIM2P, hypothetical 27.9 41 0.0014 25.5 2.9 64 43-111 33-102 (219)
80 3c6v_A Probable tautomerase/de 27.4 74 0.0025 22.8 4.2 53 41-93 78-131 (161)
81 3mb2_A 4-oxalocrotonate tautom 27.2 64 0.0022 19.3 3.3 29 65-93 20-48 (72)
82 1t0a_A 2C-methyl-D-erythritol 26.6 1.4E+02 0.0048 21.8 5.5 50 28-89 85-134 (159)
83 2pmp_A 2-C-methyl-D-erythritol 26.3 1.4E+02 0.0049 21.8 5.5 40 45-89 96-135 (160)
84 3byp_A CZRB protein; membrane 26.0 1.2E+02 0.0042 18.8 7.1 73 15-89 9-84 (94)
85 1gx1_A 2-C-methyl-D-erythritol 25.9 1.5E+02 0.005 21.7 5.5 50 28-89 84-133 (160)
86 3re3_A 2-C-methyl-D-erythritol 25.4 1.5E+02 0.0051 21.7 5.5 40 45-89 99-138 (162)
87 2opa_A Probable tautomerase YW 25.0 89 0.0031 17.5 3.6 28 66-93 20-47 (61)
88 2zzt_A Putative uncharacterize 24.8 1.5E+02 0.005 19.3 5.4 71 17-91 11-85 (107)
89 2xcz_A Possible ATLS1-like lig 24.8 1.1E+02 0.0038 19.8 4.4 29 65-93 76-104 (115)
90 3f0d_A 2-C-methyl-D-erythritol 24.1 1.6E+02 0.0055 22.0 5.5 50 28-89 106-155 (183)
91 1wju_A NEDD8 ultimate buster-1 23.8 93 0.0032 20.7 3.8 49 27-85 8-61 (100)
92 1mww_A Hypothetical protein HI 23.7 78 0.0027 21.0 3.5 29 65-93 78-106 (128)
93 2jvf_A De novo protein M7; tet 23.7 1.1E+02 0.0039 19.7 4.1 32 20-51 64-95 (96)
94 1tua_A Hypothetical protein AP 23.6 69 0.0023 23.8 3.4 72 47-120 7-81 (191)
95 1otf_A 4-oxalocrotonate tautom 23.0 1E+02 0.0035 17.3 3.5 28 66-93 20-47 (62)
96 3mlc_A FG41 malonate semialdeh 22.6 64 0.0022 22.2 2.9 53 40-94 60-112 (136)
97 4hlb_A Uncharacterized protein 21.5 1.6E+02 0.0054 19.6 4.5 73 11-84 18-90 (115)
98 1k1g_A SF1-BO isoform; splicin 20.3 24 0.00082 24.7 0.2 19 54-72 23-41 (131)
No 1
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=100.00 E-value=8.1e-44 Score=283.29 Aligned_cols=135 Identities=64% Similarity=1.010 Sum_probs=130.6
Q ss_pred CccchhhhHhHHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 040226 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (137)
Q Consensus 1 m~~~~~~~~~fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~ 80 (137)
|+.+++.+++|++|+.++++||+||.++|.++|||+|+|+|++++++|+||+++||+|||++|+++++|++.|+++|++.
T Consensus 1 ~~~~~~~~~k~vadg~~~~~ire~l~k~l~~agis~IeI~Rt~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~~~~~ 80 (240)
T 3u5c_D 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYA 80 (240)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSSCEEEEEEESCHHHHHTTTTCTHHHHHHHHHHHHTCC
T ss_pred CcccccccceEeecCchHHHHHHHHHHHHHhCCcceEEEEEcCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhccccccccc
Q 040226 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGL 136 (137)
Q Consensus 81 ~~~i~I~i~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~ 136 (137)
++++.|++.||++|++||.++|++||+|||+|++|||||+ +++++|++|| +||++
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRA~k~ai~~am~aGa-kGikI 136 (240)
T 3u5c_D 81 PGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGA-KGCEV 136 (240)
T ss_dssp TTSSEEEEECCSCGGGCHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHTTC-SEEEE
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCC-ceeEE
Confidence 8999999999999999999999999999999999999999 9999999996 99987
No 2
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.7e-45 Score=288.76 Aligned_cols=136 Identities=81% Similarity=1.170 Sum_probs=122.4
Q ss_pred CccchhhhHhHHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 040226 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (137)
Q Consensus 1 m~~~~~~~~~fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~ 80 (137)
|+.+++.+++|++||+++++||+||.++|.+||||+|+|+|+++.++|+|||++||+|||++|+++++|++.|+++|++.
T Consensus 1 ~~~~~~~~rkfv~dg~~~a~Ire~l~k~l~~agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~l~k~~~~~ 80 (227)
T 3iz6_B 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFL 80 (227)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTSSCSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHHHHHHHCCC
T ss_pred CccchhhhhhhhhcCeehHHHHHHHHHHHHhCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhcccccccccC
Q 040226 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGLM 137 (137)
Q Consensus 81 ~~~i~I~i~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~~ 137 (137)
+++++|++.||++|++||.++|++||+|||+|+||||||+ ++++||++|| +||++.
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRrA~k~ai~~~m~aGa-kGikI~ 137 (227)
T 3iz6_B 81 ENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGA-KGCEVI 137 (227)
T ss_dssp SCCCCCEEECCSSSTTSCSHHHHHHHTTTTTCCCHHHHHHHHHHTTTTTCC-SEEECC
T ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCC-ceEEEE
Confidence 8899999999999999999999999999999999999999 9999999996 999874
No 3
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.6e-44 Score=285.36 Aligned_cols=135 Identities=81% Similarity=1.140 Sum_probs=130.6
Q ss_pred CccchhhhHhHHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 040226 1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (137)
Q Consensus 1 m~~~~~~~~~fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~ 80 (137)
|+.+++.+++|++||+++.+||+||.++|.++|||+|+|+|++++++|+|||++||++||++|+++++|++.|++.|++.
T Consensus 1 ~~~~~~~~rkfv~dgv~~~~IR~~l~k~l~~agis~IeIeRt~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~ 80 (243)
T 2zkq_c 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFP 80 (243)
T ss_dssp -CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTT
T ss_pred CCcchhhhhHHHhcChHHHHHHHHHHHHHHHCCcceEEEEEcCCcEEEEEEeCCCceEEcCCchHHHHHHHHHHHHhCcC
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhccccccccc
Q 040226 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGL 136 (137)
Q Consensus 81 ~~~i~I~i~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~ 136 (137)
+++++|++.||++|++||+++|++||+|||+|++|||||+ ++++||++|| +||++
T Consensus 81 ~~~v~I~i~eV~~p~l~A~lvAe~IA~qLe~rv~FRRa~k~ai~~am~aGa-kGikI 136 (243)
T 2zkq_c 81 EGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA-KGCEV 136 (243)
T ss_dssp TCCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSC-SEEEE
T ss_pred CceEEEEEEEecCcccCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCC-ceEEE
Confidence 7899999999999999999999999999999999999999 9999999996 99986
No 4
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.4e-42 Score=272.16 Aligned_cols=128 Identities=34% Similarity=0.530 Sum_probs=123.6
Q ss_pred hhhHhHHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEE
Q 040226 6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVE 85 (137)
Q Consensus 6 ~~~~~fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~ 85 (137)
+++++|++|+++|.+||+||.++|.++|||+|+|+|++++++|+|||++||++||++|+++++|++.|+++|+. +++.
T Consensus 2 ~~~k~fv~~~~~d~~Ir~~l~k~l~~agis~ieI~r~~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~--~~v~ 79 (210)
T 3j20_C 2 AIERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGL--ENPQ 79 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCSSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSC--SSCE
T ss_pred cchHHHHHhhhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCC--CceE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999985 5588
Q ss_pred EEEEEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhccccccccc
Q 040226 86 LYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGL 136 (137)
Q Consensus 86 I~i~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~ 136 (137)
|++.||++|++||+++|++||+|||+|+||||||+ +++++|++|| +||++
T Consensus 80 I~i~eV~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~Ga-kGikI 130 (210)
T 3j20_C 80 IEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGA-RGVEI 130 (210)
T ss_dssp EEEEECSCTTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC-SEEEE
T ss_pred EEEEEecCCccCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCC-ceEEE
Confidence 88999999999999999999999999999999999 9999999996 99987
No 5
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=100.00 E-value=1.1e-41 Score=271.87 Aligned_cols=132 Identities=45% Similarity=0.809 Sum_probs=128.2
Q ss_pred chhhhHhHHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCe
Q 040226 4 QISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS 83 (137)
Q Consensus 4 ~~~~~~~fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~ 83 (137)
+++.+++|+.+++.+.+||+||.++|.++|||+|+|+|++++++|+|||++||++||++|+++++|++.|++.|++.+++
T Consensus 7 ~~~~~kkfv~~~l~ed~Ir~~l~~~l~~agis~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~~~~ 86 (243)
T 2xzm_C 7 AINKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDDQ 86 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHCCSSCEEEECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHHHHHHHCCTTTT
T ss_pred hhhhHHHHHHhHhHHHHHHHHHHHHHHHCCcceEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHHHHHHhCcCCce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred EEEEEEEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhccccccccc
Q 040226 84 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGL 136 (137)
Q Consensus 84 i~I~i~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~ 136 (137)
++|++.||++|++||.++|++||+|||+|++|||||+ ++++||++|| +||++
T Consensus 87 v~I~i~eV~~p~l~A~lvAe~IA~qLe~Rv~FRRA~k~ai~~am~aGa-kGIkI 139 (243)
T 2xzm_C 87 IQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGA-KGCEI 139 (243)
T ss_dssp SEEEEEECSCGGGCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-SEEEE
T ss_pred EEEEEEEecCcccCHHHHHHHHHHHHHccchHHHHHHHHHHHHHhcCC-ceEEE
Confidence 9999999999999999999999999999999999999 9999999996 99986
No 6
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=100.00 E-value=1.1e-39 Score=255.06 Aligned_cols=125 Identities=20% Similarity=0.251 Sum_probs=120.8
Q ss_pred hHhHHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q 040226 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY 87 (137)
Q Consensus 8 ~~~fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~ 87 (137)
.++|.+...+|.+||+||.+++.++|||+|+|+|+++.++|+||+++||++||++|+++++|++.|++.|+. ++.|+
T Consensus 25 ~k~y~~~l~eD~~Ir~~l~k~l~~agis~ieI~r~~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~---~v~I~ 101 (206)
T 3r8n_C 25 TKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV---PAQIN 101 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTEEEEECCCCSSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSS---CBCCB
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCC---ceEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999999999983 48888
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhccccccccc
Q 040226 88 AEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGL 136 (137)
Q Consensus 88 i~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~ 136 (137)
+.||++|++||.++|++||+|||+|+||||||+ ++++||++|| +||++
T Consensus 102 i~ev~~p~l~A~lvAe~Ia~qLe~rv~fRra~k~ai~~~m~~ga-kGikI 150 (206)
T 3r8n_C 102 IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGA-KGIKV 150 (206)
T ss_dssp CCBCSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCC-SEEEE
T ss_pred EEecCCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHHHhhcCC-CceEE
Confidence 999999999999999999999999999999999 9999999996 99987
No 7
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=100.00 E-value=5.1e-39 Score=255.15 Aligned_cols=126 Identities=20% Similarity=0.244 Sum_probs=121.2
Q ss_pred hHhHHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q 040226 8 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY 87 (137)
Q Consensus 8 ~~~fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~ 87 (137)
.++|.+...+|.+||+||.++|.++|||+|+|+|+++.++|+|||++||+|||++|+++++|+..|++.|+. ++.|+
T Consensus 26 ~k~y~~~l~eD~kIr~~l~k~l~~agis~IeI~R~~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~---~v~I~ 102 (233)
T 3i1m_C 26 TKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV---PAQIN 102 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTS---CBCCE
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCC---ceEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999999999983 48889
Q ss_pred EEEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhcccccccccC
Q 040226 88 AEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGLM 137 (137)
Q Consensus 88 i~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~~ 137 (137)
+.||++|++||.++|++||+|||+|+||||||+ ++++||++|| +||++.
T Consensus 103 i~eV~~p~l~A~lvAe~IA~qLe~rv~FRramk~ai~~am~aGa-kGikI~ 152 (233)
T 3i1m_C 103 IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGA-KGIKVE 152 (233)
T ss_dssp EEECSSGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred EEeecCCCcCHHHHHHHHHHHHHccccHHHHHHHHHHhhhhcCC-ceEEEE
Confidence 999999999999999999999999999999999 9999999996 999873
No 8
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=6.3e-38 Score=249.83 Aligned_cols=124 Identities=21% Similarity=0.307 Sum_probs=120.3
Q ss_pred HhHHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEE
Q 040226 9 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYA 88 (137)
Q Consensus 9 ~~fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i 88 (137)
++|.+...+|.+||+||.++|.++|||+|+|+|+++.++|+||+++||++||++|+++++|++.|++.++ .++.|++
T Consensus 27 k~y~~~l~eD~~IR~~l~k~l~~agis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~---~~v~I~i 103 (239)
T 2vqe_C 27 KQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTG---KNVALNV 103 (239)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSSSSHHHHHHHHHHHHST---TCCCCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCeEEEEEEeCCCcceecCCchHHHHHHHHHHHHhC---CeeEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999996 5788999
Q ss_pred EEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhccccccccc
Q 040226 89 EKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGL 136 (137)
Q Consensus 89 ~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~ 136 (137)
.||++|++||.++|++||+|||+|++|||||+ ++++||++|| +||++
T Consensus 104 ~eVk~p~l~A~lvAe~Ia~qLe~rv~FRra~k~ai~~am~~ga-kGIkI 151 (239)
T 2vqe_C 104 QEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGA-KGAKV 151 (239)
T ss_dssp EECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSC-SEEEE
T ss_pred EEecCCCcCHHHHHHHHHHHHHccchHHHHHHHHHHHHHHcCC-CceEE
Confidence 99999999999999999999999999999999 9999999996 99987
No 9
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.7e-38 Score=249.18 Aligned_cols=127 Identities=10% Similarity=0.134 Sum_probs=122.1
Q ss_pred HhHHHhhHHHHHHHHHHHhhhcc-----C---CccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCC
Q 040226 9 RKFVADGVFFAELNEVLTRELAE-----D---GYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFP 80 (137)
Q Consensus 9 ~~fi~~~~~~~~Ire~l~k~~~~-----a---gis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~ 80 (137)
++|.+...+|.+||+||.++|.+ | |||+|+|+|+++.++|+|||++||++||++|+++++|++.|++.|++.
T Consensus 27 k~y~~~l~eD~~IR~~i~~~l~~~~~~~a~~~gis~ieI~r~~~~i~I~I~~~rPg~vIGk~g~~i~~L~~~l~k~~~~~ 106 (218)
T 3bbn_C 27 KNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLKINVQKELNCV 106 (218)
T ss_dssp TSSHHHHHHHHHHHHHHHSCCSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESCTTTTSCSSSCTTHHHHHHHHHHSCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccccccCccceEEEEEcCCeEEEEEEecCCCcEecCCcHHHHHHHHHHHHHhccC
Confidence 68899999999999999999998 9 999999999999999999999999999999999999999999999765
Q ss_pred CCeEEEEEEEecCCCcCHHHHHHHHHHHHHcChHHHHHHH-HHHHHHhccccccccc
Q 040226 81 ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRYIL-IISQILSNKALRSCGL 136 (137)
Q Consensus 81 ~~~i~I~i~ev~~P~l~A~liA~~ia~qLe~Rv~fRRa~k-ai~~a~~~ga~kG~~~ 136 (137)
++++.|++.||++|++||.++|++||.|||+|+||||||+ ++++||++|| +||++
T Consensus 107 ~~~v~i~i~ev~~p~l~A~lvAe~Ia~qLe~r~~fRra~k~ai~~~m~~ga-kGikI 162 (218)
T 3bbn_C 107 NRKLNIAITRIAKPYGDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADT-KGIQI 162 (218)
T ss_dssp CCCCCCCEEECSCTTTSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCC-SEEEE
T ss_pred CceEEEEEEEecCCCcCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhCC-CeEEE
Confidence 6889999999999999999999999999999999999999 9999999996 99987
No 10
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=99.95 E-value=1.1e-28 Score=171.19 Aligned_cols=87 Identities=80% Similarity=1.064 Sum_probs=84.4
Q ss_pred HhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEec
Q 040226 13 ADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVN 92 (137)
Q Consensus 13 ~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev~ 92 (137)
.||+++++||+||.++|.+||||+|+|+|++++++|+|||+|||+|||++|+++++|+..|++.|++.+++|+|+|.||+
T Consensus 4 ~~gv~~~~IR~~i~k~l~~aGis~IeIeR~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV~ 83 (92)
T 1wh9_A 4 GSSGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 83 (92)
T ss_dssp SSCSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHHCceeeEEEEECCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred CCCcCHH
Q 040226 93 NRGLCAI 99 (137)
Q Consensus 93 ~P~l~A~ 99 (137)
+||+||+
T Consensus 84 ~P~ldA~ 90 (92)
T 1wh9_A 84 TRGSGPS 90 (92)
T ss_dssp CSCCCSC
T ss_pred CCCcCCC
Confidence 9999984
No 11
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=97.02 E-value=0.0012 Score=48.99 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhccCCcc--ceEE-EEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 040226 19 AELNEVLTRELAEDGYS--GVEV-RVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (137)
Q Consensus 19 ~~Ire~l~k~~~~agis--~IeI-~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~ 78 (137)
.++.+||..-|..-|+. .+++ ....+.+.+.|.....|++||+.|++++.|+..+...++
T Consensus 5 ~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn 67 (152)
T 2pt7_G 5 HEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIH 67 (152)
T ss_dssp HHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHHHHhh
Confidence 46889999999999985 4777 345778999999999999999999999999999877665
No 12
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=95.10 E-value=0.062 Score=42.02 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=48.8
Q ss_pred HHHHHHHhhhccCCcc-ceEEEEc--CCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 040226 20 ELNEVLTRELAEDGYS-GVEVRVT--PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (137)
Q Consensus 20 ~Ire~l~k~~~~agis-~IeI~R~--~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~ 78 (137)
...+||..-|...|+. .|++.-. .+.+.|.|....+|.+||++|+.++.|+..+...++
T Consensus 65 ~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 65 KAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 5678999999988885 3556432 478999999999999999999999999998887765
No 13
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=91.62 E-value=0.24 Score=32.29 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=42.7
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE------------EEEecCCCcCHHHHHHHHHHHHHcC
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY------------AEKVNNRGLCAIAQAESLRYKLLGG 112 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~------------i~ev~~P~l~A~liA~~ia~qLe~R 112 (137)
..++.|-...-|.+||++|..+++|++. ++. +|.|. ...|.-+ .++.-.|..+...+-..
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik~I~~~----tga---~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLVEYQEL----TGA---RIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTY 75 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH----HCC---EEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHHHHHHH----hCC---EEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 4567777888899999999999988774 432 22221 1223332 34666777777776555
Q ss_pred hHHHHHH
Q 040226 113 LAVRRYI 119 (137)
Q Consensus 113 v~fRRa~ 119 (137)
...||+-
T Consensus 76 ~~~~r~~ 82 (87)
T 1ec6_A 76 EQGVRAS 82 (87)
T ss_dssp HHHHHHH
T ss_pred ccccccc
Confidence 6666653
No 14
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.50 E-value=1.8 Score=33.93 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhccCCccceEEEEc------CCeEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCCC
Q 040226 16 VFFAELNEVLTRELAEDGYSGVEVRVT------PVRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPEN 82 (137)
Q Consensus 16 ~~~~~Ire~l~k~~~~agis~IeI~R~------~~~i~I~I~~arPg---~viG~~g~~i~~L----~~~L~k~~~~~~~ 82 (137)
..+.++-+.+..+++.+ ..+.|+.- ...+..+|++.+++ ++||++|+.++++ +..|++.|+. +-
T Consensus 197 ~~re~l~~~l~~e~p~~--~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~~-~v 273 (301)
T 1ega_A 197 IIREKLMRFLGAELPYS--VTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEA-PV 273 (301)
T ss_dssp HHHHHHHHHHGGGCCTT--EEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTS-CE
T ss_pred HHHHHHHHHhCCCCCeE--EEEEEEEEEecCCCeEEEEEEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHCC-Ce
Confidence 34444445555554433 45666622 34677889997775 6999999999776 5678888873 23
Q ss_pred eEEEEEE
Q 040226 83 SVELYAE 89 (137)
Q Consensus 83 ~i~I~i~ 89 (137)
.+.++|.
T Consensus 274 ~l~l~vk 280 (301)
T 1ega_A 274 HLELWVK 280 (301)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 3444443
No 15
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=88.42 E-value=1.5 Score=34.44 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=50.3
Q ss_pred HHHhhHHHHHHHHHHHhhhccCCccceEEEE---cC-----CeEEEEEEecccc---eeeccCcccHHHH----HHHHHH
Q 040226 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRV---TP-----VRTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQK 75 (137)
Q Consensus 11 fi~~~~~~~~Ire~l~k~~~~agis~IeI~R---~~-----~~i~I~I~~arPg---~viG~~g~~i~~L----~~~L~k 75 (137)
|.-...++.++-+.+..+++.+ ..++|+. .. ..|.-+|++.|++ ++||++|+.|+++ +..|++
T Consensus 199 ~~~~e~irek~~~~~~~eiP~~--~~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~ 276 (308)
T 3iev_A 199 LLAAEIVREKAMMLTREEVPTS--IAVKINEIKPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELEL 276 (308)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHH--CEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcCCe--eEEEeEEEEEccCCCCeEEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHH
Confidence 3333444444444444455443 2244432 22 3677799999997 6999999999765 567888
Q ss_pred HhCCCCCeEEEEEEEecCCCcCHH
Q 040226 76 RFKFPENSVELYAEKVNNRGLCAI 99 (137)
Q Consensus 76 ~~~~~~~~i~I~i~ev~~P~l~A~ 99 (137)
.|+. +-.+.++|.--++=--++.
T Consensus 277 ~~~~-~v~l~l~vkv~~~w~~~~~ 299 (308)
T 3iev_A 277 ILGR-PVYLELWVKVVPDWRRRPE 299 (308)
T ss_dssp HHTS-CEEEEEEEEECTTGGGCHH
T ss_pred HhCC-ceEEEEEEEECCCcccCHH
Confidence 8873 3345565544443333343
No 16
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=87.07 E-value=0.62 Score=33.88 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=38.7
Q ss_pred hhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHH
Q 040226 27 RELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (137)
Q Consensus 27 k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L 73 (137)
..+.++.+-++-+.-..+++.+.+.....|..+|.+|++++.+.+.|
T Consensus 19 e~~t~a~~~dcvid~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~el 65 (144)
T 2cxc_A 19 HSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREAL 65 (144)
T ss_dssp HHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhCCCeeeEEEeCCCCEEEEEEeCCCccccCccCchHHHHHHHHh
Confidence 45667778787775556899999988888999999999999988766
No 17
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=84.12 E-value=0.37 Score=30.35 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.2
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
..++.|....-|.+||++|+.+++|++.
T Consensus 4 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 31 (76)
T 1dtj_A 4 LVEMAVPENLVGAILGKGGKTLVEYQEL 31 (76)
T ss_dssp EEEEEEETTTHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEChHHcceEECCCchHHHHHHHH
Confidence 4567777888899999999999988774
No 18
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=84.12 E-value=0.3 Score=31.73 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=24.2
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L 73 (137)
...+.|...+-|.|||++|+.+++|++.-
T Consensus 15 ~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 43 (85)
T 2opv_A 15 VQEIMIPAGKAGLVIGKGGETIKQLQERA 43 (85)
T ss_dssp EEEEEECTTTHHHHHTTTTHHHHHHHHHH
T ss_pred EEEEEeChhheeeeECCCCHHHHHHHHHH
Confidence 45677888889999999999999887753
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=82.85 E-value=0.32 Score=30.83 Aligned_cols=29 Identities=10% Similarity=0.491 Sum_probs=24.3
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHH
Q 040226 44 VRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 44 ~~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
...++.+....-|.+||++|+.|++|++.
T Consensus 5 ~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~ 33 (73)
T 2axy_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREE 33 (73)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEChhHeeeEECCCCHHHHHHHHH
Confidence 35677788888899999999999998874
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=82.79 E-value=0.69 Score=29.75 Aligned_cols=28 Identities=21% Similarity=0.499 Sum_probs=23.6
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
..++.|....-|.+||++|+.+++|++.
T Consensus 8 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~ 35 (82)
T 1zzk_A 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHE 35 (82)
T ss_dssp EEEEEEETTTGGGGTCGGGHHHHHHHHH
T ss_pred EEEEEEChHhcCeeECCCchHHHHHHHH
Confidence 4567778888899999999999998874
No 21
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=82.09 E-value=0.38 Score=32.50 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHH
Q 040226 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (137)
Q Consensus 43 ~~~i~I~I~~arPg~viG~~g~~i~~L~~~L 73 (137)
|...++.|...+-|.|||++|+.|++|++.-
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~t 44 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKAS 44 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHH
Confidence 3456778888899999999999999887753
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=81.72 E-value=0.55 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=23.2
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
..++.|....-|.|||++|+.|++|++.
T Consensus 7 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 34 (82)
T 1wvn_A 7 THELTIPNNLIGCIIGRQGANINEIRQM 34 (82)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEchHhccceeCCCchhHHHHHHH
Confidence 4566777788899999999999998774
No 23
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=80.92 E-value=3.1 Score=32.64 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=37.9
Q ss_pred eEEEEEEecccc---eeeccCcccHHHH----HHHHHHHhCCCCCeEEEEEEEecCCCcCHHHH
Q 040226 45 RTEIIIRATRTQ---NVLGEKGRRIREL----TSVVQKRFKFPENSVELYAEKVNNRGLCAIAQ 101 (137)
Q Consensus 45 ~i~I~I~~arPg---~viG~~g~~i~~L----~~~L~k~~~~~~~~i~I~i~ev~~P~l~A~li 101 (137)
.+..+|++.+++ ++||++|+.|+++ +..|++.|+. +-.+.++|.--++=--++..+
T Consensus 229 ~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~-~v~l~l~vkv~~~w~~~~~~~ 291 (301)
T 1wf3_A 229 YIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGK-KVYLDLEVKVYPDWRKDPEAL 291 (301)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTS-EEEEEEEEEECTTGGGCHHHH
T ss_pred EEEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCC-ceEEEEEEEECCCcccCHHHH
Confidence 566689999986 6999999999765 5678888872 233456555444444444443
No 24
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=80.90 E-value=0.45 Score=31.55 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=24.5
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L~ 74 (137)
..++.|...+-|.|||++|+.|++|++.--
T Consensus 16 ~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tg 45 (94)
T 1x4m_A 16 VQEIMIPASKAGLVIGKGGETIKQLQERAG 45 (94)
T ss_dssp EEEEEECHHHHHHHSCSSSSHHHHHHHHHT
T ss_pred EEEEEEChhhcceEECCCCHHHHHHHHHHC
Confidence 456677778889999999999999888543
No 25
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=80.81 E-value=2.3 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=25.2
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHH
Q 040226 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (137)
Q Consensus 43 ~~~i~I~I~~arPg~viG~~g~~i~~L~~~L 73 (137)
+..+++.|...+-+.|||++|+.|++|++.-
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~T 40 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDA 40 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHH
Confidence 4467888888999999999999999987753
No 26
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=80.81 E-value=0.95 Score=30.72 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=24.4
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
..++.|....-|.|||++|+.|++|++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~ 35 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQ 35 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHH
Confidence 5678888999999999999999998774
No 27
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=80.13 E-value=0.44 Score=30.17 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=22.8
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
..++.|....-|.+||++|+.+++|++.
T Consensus 6 ~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~ 33 (76)
T 2p2r_A 6 SHELTIPNDLIGCIIGRQGAKINEIRQM 33 (76)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcceEECCCChHHHHHHHH
Confidence 4566777777889999999999988774
No 28
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=79.44 E-value=0.66 Score=29.17 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.5
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
..++.|...+-|.+||++|+.+++|++.
T Consensus 6 ~~~i~I~~~~ig~iIG~gG~~I~~I~e~ 33 (71)
T 1vig_A 6 YVEINIDHKFHRHLIGKSGANINRIKDQ 33 (71)
T ss_dssp EEEEEECSSHHHHHTCSSCCHHHHHHHH
T ss_pred EEEEEECHHHhhhhcCCCCccHHHHHHH
Confidence 4567777788889999999999998875
No 29
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=79.22 E-value=0.64 Score=33.15 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=26.6
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHHH
Q 040226 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (137)
Q Consensus 43 ~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~ 74 (137)
+..+++.|....-|.+||++|+.+++|++.-.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg 33 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFAS 33 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHC
Confidence 45678888889999999999999999887543
No 30
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=77.23 E-value=0.66 Score=30.61 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=23.9
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHH
Q 040226 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 43 ~~~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
....++.|-...-|.|||++|+.|++|++.
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~ 43 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQE 43 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHH
Confidence 345667777778889999999999987774
No 31
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.68 E-value=0.64 Score=30.43 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=21.7
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
.+++.|-...-|.|||++|+.+++|++.
T Consensus 11 ~~~i~VP~~~vG~IIGkgG~tIk~Iqe~ 38 (83)
T 2dgr_A 11 TIQVRVPYRVVGLVVGPKGATIKRIQQR 38 (83)
T ss_dssp EEEEECCHHHHHHHHTTTTSSHHHHHHH
T ss_pred EEEEEeChHHeeeeECCCchHHHHHHHH
Confidence 3455555666778999999999998875
No 32
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=74.90 E-value=3.2 Score=36.26 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhc-cCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEecCCCcC
Q 040226 19 AELNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLC 97 (137)
Q Consensus 19 ~~Ire~l~k~~~-~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev~~P~l~ 97 (137)
.+-++++.+-.+ +||+++|.. .++.-+|.+++.+||.++|+.|..+.++.+ ..+.. - ..+..|-..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~----~~~~~---~----~~~~~p~~~ 149 (651)
T 3af5_A 83 EEAEKLIFEIVPKEAEITNIAF--DPSVGEVLIEAKKPGLVIGKNGETLRLITQ----KVKWA---P----KVVRTPPLQ 149 (651)
T ss_dssp HHHHHHHHHHSCGGGCCCEEEE--ETTTTEEEEEESSTTTTSCTTSHHHHHHHH----HHCSE---E----EEEECCSSC
T ss_pred HHHHHHHHHhCCCccCccceee--cCCCceEEEEECCCCccccccchhHHHHhh----ccCcc---c----ccccCCCCC
Confidence 344566666664 688886555 566778899999999999999877766555 44431 1 123366666
Q ss_pred HHHHHHHHHHHHH
Q 040226 98 AIAQAESLRYKLL 110 (137)
Q Consensus 98 A~liA~~ia~qLe 110 (137)
+..++...+....
T Consensus 150 ~~~~~~i~~~l~~ 162 (651)
T 3af5_A 150 SQTIYSIRQILQT 162 (651)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHh
Confidence 6666655544333
No 33
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=74.78 E-value=0.84 Score=29.85 Aligned_cols=28 Identities=21% Similarity=0.499 Sum_probs=22.4
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
..++.|....-|.|||++|+.+++|++.
T Consensus 15 ~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~ 42 (89)
T 1j5k_A 15 TTQVTIPKDLAGSIIGKGGQRIKQIRHE 42 (89)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChhhcceeECCCCHhHHHHHHH
Confidence 4456677777889999999999988774
No 34
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=74.68 E-value=2.6 Score=36.70 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhc-cCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEecCCCcC
Q 040226 19 AELNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLC 97 (137)
Q Consensus 19 ~~Ire~l~k~~~-~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev~~P~l~ 97 (137)
.+-.+++.+-.+ +||+++|.. .++.-+|.+++.+||.++|+.|..+.++.+ ..+..+ ..+..|-..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~g~~~~~~~~i~~----~~~~~~-------~~~~~p~~~ 140 (636)
T 2ycb_A 74 EKAIRKIHEIVPEEAKITNISF--DDVTCEVIIEARKPGLVIGKYGSTSREIVK----NTGWAP-------KILRTPPIS 140 (636)
T ss_dssp HHHHHHHHHTSCSTTCEEEEEE--ETTTTEEEEEESCTHHHHCTTSHHHHHHHH----HHCCEE-------EEEECCSSC
T ss_pred HHHHHHHHHhCCCccCccceEe--cCCCceEEEEECCCCccccccchhHHHHhh----ccCCcc-------ceeecCCcc
Confidence 445566666655 678876555 566778899999999999999877766554 555321 123466666
Q ss_pred HHHHHHHHHH
Q 040226 98 AIAQAESLRY 107 (137)
Q Consensus 98 A~liA~~ia~ 107 (137)
...++...+.
T Consensus 141 ~~~~~~i~~~ 150 (636)
T 2ycb_A 141 SEIIERIRRT 150 (636)
T ss_dssp CHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 6666655544
No 35
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=73.86 E-value=2.7 Score=30.39 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHhhhccCCccceEEEEcCC--eEEEEEEecccceeeccCcccHHHHHHHHHHHhC
Q 040226 21 LNEVLTRELAEDGYSGVEVRVTPV--RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK 78 (137)
Q Consensus 21 Ire~l~k~~~~agis~IeI~R~~~--~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~ 78 (137)
..+|+.+-|..|.+.+|.+.-... ...|.+.-..-+..||++|+.++-..+.....++
T Consensus 78 ~~~fI~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id 137 (144)
T 2cxc_A 78 LERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG 137 (144)
T ss_dssp HHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence 468888899999999999864333 3444444444567999999999877776665554
No 36
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=73.72 E-value=3 Score=36.42 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhc-cCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEecCCCcC
Q 040226 19 AELNEVLTRELA-EDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLC 97 (137)
Q Consensus 19 ~~Ire~l~k~~~-~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev~~P~l~ 97 (137)
.+-++++.+-.+ +||+++|.. .++.-+|.+++.+||.++|+.|..+.++.+ ..+.. - ..+..|-..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~----~~~~~---~----~~~~~p~~~ 144 (640)
T 2xr1_A 78 EDSISIIEEVVPKESVISSYYF--DPDSGEVIIEAEKPGLVIGKHGATLREITK----QIGWI---P----KVVRTPPIK 144 (640)
T ss_dssp HHHHHHHHHHSCGGGCEEEEEE--CTTTSEEEEEESSHHHHHCSSSHHHHHHHH----HHCSE---E----EEEECCSSC
T ss_pred HHHHHHHHHhCCCccCccceee--cCCCceEEEEeCCCCcccccchhhHHHHHh----ccCcc---c----ccccCCCcc
Confidence 344556665554 678876544 677889999999999999999877766555 44431 1 123366666
Q ss_pred HHHHHHHHHHH
Q 040226 98 AIAQAESLRYK 108 (137)
Q Consensus 98 A~liA~~ia~q 108 (137)
+..++...+..
T Consensus 145 ~~~~~~i~~~l 155 (640)
T 2xr1_A 145 SRTVKNIREFM 155 (640)
T ss_dssp CHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 66665555443
No 37
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=72.99 E-value=1.1 Score=29.88 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=25.0
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHH
Q 040226 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (137)
Q Consensus 44 ~~i~I~I~~arPg~viG~~g~~i~~L~~~L~ 74 (137)
..+.+.|....-+.|||++|+.|++|++.--
T Consensus 17 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg 47 (97)
T 2ctl_A 17 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHD 47 (97)
T ss_dssp CEEEEECCTTTHHHHSCSSSCHHHHHHHHHT
T ss_pred eeEEEEECHHHhhhcCCCCchhHHHHHHHHC
Confidence 3566777777788999999999999888543
No 38
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=71.90 E-value=1.1 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.394 Sum_probs=23.3
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L~ 74 (137)
..++.|-..+-|.|||++|+.+++|++.-.
T Consensus 18 t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg 47 (94)
T 2cte_A 18 SATVAIPKEHHRFVIGKNGEKLQDLELKTA 47 (94)
T ss_dssp EEEEECCTTTHHHHHCSSSCHHHHHHHHTT
T ss_pred EEEEEEChHHeeeeECCCChhHHHHHHHHC
Confidence 455666667778899999999999888543
No 39
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=69.25 E-value=0.56 Score=31.63 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred EEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCe-EEEE----EEEecCCCcCHHHHHHHHHHHHHcChH
Q 040226 46 TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENS-VELY----AEKVNNRGLCAIAQAESLRYKLLGGLA 114 (137)
Q Consensus 46 i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~-i~I~----i~ev~~P~l~A~liA~~ia~qLe~Rv~ 114 (137)
.++.|...+-|.+||++|+.|+++++. ++ .+ |+|. ...|.-++.+|.--|..+-+.+|..++
T Consensus 17 ~~i~I~~dkIg~vIG~gGk~Ik~I~e~----tG---v~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie~~~~ 83 (91)
T 2cpq_A 17 EEFVVREDLMGLAIGTHGSNIQQARKV----PG---VTAIELDEDTGTFRIYGESADAVKKARGFLEFVEDFIQ 83 (91)
T ss_dssp EEEECCHHHHHHHHTTTTHHHHHHHTS----TT---EEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCCCCCC
T ss_pred EEEEEChHHhhhhcCCCcHHHHHHHHH----hC---CeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhheEEe
Confidence 445556667788999999999887763 44 22 3331 012556777787777777777776554
No 40
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=69.05 E-value=0.87 Score=30.89 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=24.1
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHH
Q 040226 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 43 ~~~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
|...++.|...+-|.|||++|+.|++|++.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~ee 45 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDE 45 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHH
Confidence 445667777777889999999999988774
No 41
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=67.06 E-value=3.6 Score=35.91 Aligned_cols=54 Identities=20% Similarity=0.457 Sum_probs=38.6
Q ss_pred HHHHHHHHhhh-ccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHh
Q 040226 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRF 77 (137)
Q Consensus 19 ~~Ire~l~k~~-~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~ 77 (137)
..|++-+.+.+ .++.+++||.+ +-+|.|||-.|..+.. +|.-+++|-+.|+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 70 (651)
T 3af5_A 16 RDIRAVVNQMVPKEAKITEIEFE----GPELVIYVKNPEAIMK-DGELIKDLAKVLKKRI 70 (651)
T ss_dssp HHHHHHHTTTSCTTSCEEEEEEC----SSSEEEEESSCC------CCSHHHHHHHHTSCE
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCeEEEEeCCHHHhhc-ccHHHHHHHHHhhceE
Confidence 67778888888 57789999884 5678999999999874 4567888888777643
No 42
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=63.82 E-value=2.2 Score=28.33 Aligned_cols=31 Identities=16% Similarity=0.450 Sum_probs=24.8
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHH
Q 040226 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (137)
Q Consensus 44 ~~i~I~I~~arPg~viG~~g~~i~~L~~~L~ 74 (137)
...++.|...+-+.+||++|+.+++|.+.-.
T Consensus 17 vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg 47 (95)
T 2ctm_A 17 VSEDVPLDHRVHARIIGARGKAIRKIMDEFK 47 (95)
T ss_dssp CCEEEECCTTTHHHHHCSSSCHHHHHHHHHT
T ss_pred EEEEEEECHHHccccCCCCcchHHHHHHHHC
Confidence 3566777777888999999999999888543
No 43
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=62.90 E-value=2.1 Score=30.93 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=24.4
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L~ 74 (137)
.+++.|....-|.+||++|+.+++|++.-.
T Consensus 7 ~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg 36 (178)
T 2anr_A 7 FLKVLIPSYAAGSIIGKGGQTIVQLQKETG 36 (178)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred EEEEEEChhHeeeeECCCcHHHHHHHHHhC
Confidence 456677778889999999999999888543
No 44
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=62.81 E-value=1.6 Score=30.95 Aligned_cols=30 Identities=10% Similarity=0.463 Sum_probs=24.3
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHH
Q 040226 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (137)
Q Consensus 44 ~~i~I~I~~arPg~viG~~g~~i~~L~~~L 73 (137)
...++.|....-|.+||++|+.+++|++.-
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~t 34 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREES 34 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHH
Confidence 356677777888999999999999988754
No 45
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=62.72 E-value=27 Score=26.79 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceee-ccCcccHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 040226 15 GVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVL-GEKGRRIRELTSVVQKRFKFPENSVELYAEKV 91 (137)
Q Consensus 15 ~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~vi-G~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev 91 (137)
.....+|++.+.+.-.-.++.++.+.+......+++|..-|+-.- ..-.+-.+++++.|++.++. ..+.|.+++.
T Consensus 205 ~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~--~~v~ih~ep~ 280 (283)
T 3h90_A 205 DEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG--SDVIIHQDPC 280 (283)
T ss_dssp HHHHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT--CEEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC--CeEEEEeccC
Confidence 345566777776532223455666666677788888887775321 11122347777777777763 5677777654
No 46
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=61.51 E-value=14 Score=29.01 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=42.4
Q ss_pred HHHHHHHhhhccCCccceEE---EEc-CCeEEEEEEecccc-----eeeccCcccHHHHHHHHHHHhCCCCCeEEE
Q 040226 20 ELNEVLTRELAEDGYSGVEV---RVT-PVRTEIIIRATRTQ-----NVLGEKGRRIRELTSVVQKRFKFPENSVEL 86 (137)
Q Consensus 20 ~Ire~l~k~~~~agis~IeI---~R~-~~~i~I~I~~arPg-----~viG~~g~~i~~L~~~L~k~~~~~~~~i~I 86 (137)
+++++|..+.++-.=+-|+| -|. ..+.+|-+++.-|+ ..||.+|.+++.+.+.|. ..+|.|
T Consensus 84 lvk~Lfe~EVPEI~dG~veI~~iaRe~G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~------gekIDI 153 (251)
T 2asb_A 84 LVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS------GEKIDI 153 (251)
T ss_dssp HHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT------TCEEEE
T ss_pred HHHHHHHhcchHhhcCeEEEEEEecCCCceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhC------CCeEEE
Confidence 55677777766532223555 455 47999999998886 489999999988866553 366665
No 47
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=61.25 E-value=2.4 Score=29.87 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=22.2
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 040226 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 46 i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
.++.|....-|.+||++|+.|++|++.
T Consensus 4 ~~~~Vp~~~~g~iIGk~G~~Ik~i~~~ 30 (164)
T 2jvz_A 4 QEIMIPAGKAGLVIGKGGETIKQLQER 30 (164)
T ss_dssp EEEEECTTCHHHHTCTTTHHHHHHHHT
T ss_pred EEEEechhheeEEECCChHHHHHHHHH
Confidence 456677778889999999999998873
No 48
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=59.69 E-value=3.3 Score=29.30 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=23.4
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L 73 (137)
..++.|....-|.+||++|+.+++|++.-
T Consensus 86 ~~~i~vp~~~~g~iIGkgG~~I~~i~~~t 114 (163)
T 3krm_A 86 ETHIRVPASAAGRVIGKGGKTVNELQNLT 114 (163)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEcChhheeeEEcCCChHHHHHHHHh
Confidence 34677777888999999999999987743
No 49
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=59.47 E-value=47 Score=23.97 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhhccCCccceEEEE--cCCeEEEEEEecccceeeccCcccH---HHHHHHHHHHhC--CCCCeEEEEEEE
Q 040226 18 FAELNEVLTRELAEDGYSGVEVRV--TPVRTEIIIRATRTQNVLGEKGRRI---RELTSVVQKRFK--FPENSVELYAEK 90 (137)
Q Consensus 18 ~~~Ire~l~k~~~~agis~IeI~R--~~~~i~I~I~~arPg~viG~~g~~i---~~L~~~L~k~~~--~~~~~i~I~i~e 90 (137)
...+.+.+..-+.. |+.=++++- ....-.+.|+.-+|+ |-.+ .++...|...|. ..++-=.=+..|
T Consensus 11 ~~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~------gi~lddC~~vSr~is~~LD~~~~d~i~~~Y~LE 83 (164)
T 1ib8_A 11 VELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPE------GITLNDTADLTEMISPVLDTIKPDPFPEQYFLE 83 (164)
T ss_dssp HHHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSS------CCCHHHHHHHHHHHGGGTTTCCSCCCCSCEEEE
T ss_pred HHHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCC------CCCHHHHHHHHHHHHHHhccccccCCCCCeEEE
Confidence 45788888888888 987666654 455566666777774 4455 567778888876 433211235689
Q ss_pred ecCCCcCH
Q 040226 91 VNNRGLCA 98 (137)
Q Consensus 91 v~~P~l~A 98 (137)
|+.|+++=
T Consensus 84 VSSPGldR 91 (164)
T 1ib8_A 84 ITSPGLER 91 (164)
T ss_dssp EECCSSSS
T ss_pred EeCCCCCC
Confidence 99999874
No 50
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=58.77 E-value=2.7 Score=30.29 Aligned_cols=29 Identities=14% Similarity=0.385 Sum_probs=23.9
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHH
Q 040226 44 VRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 44 ~~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
...++.|....-|.+||++|..+++|++.
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 35677788888899999999999987763
No 51
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=58.02 E-value=28 Score=22.73 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=38.6
Q ss_pred eEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhC-CCCCeEEEEEEEecCCCcCHHHHHHHHHHHHH
Q 040226 37 VEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFK-FPENSVELYAEKVNNRGLCAIAQAESLRYKLL 110 (137)
Q Consensus 37 IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~-~~~~~i~I~i~ev~~P~l~A~liA~~ia~qLe 110 (137)
|.|+|....++|.|.++- |++++.--+.|++.+. ...+++.|.+ -..-+-.|.-+-+.||.-|.
T Consensus 10 ikiqrdgqeieidirvst--------gkeleralqelekalaragarnvqiti--saendeqakelleliarllq 74 (96)
T 2jvf_A 10 IKIQRDGQEIEIDIRVST--------GKELERALQELEKALARAGARNVQITI--SAENDEQAKELLELIARLLQ 74 (96)
T ss_dssp EEEEETTEEEEEEEECCS--------SSHHHHHHHHHHHHHHHHTCSEEEEEE--ECSSHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCeEEEEEEEEcc--------cHHHHHHHHHHHHHHHhccccceEEEE--EecChHHHHHHHHHHHHHHH
Confidence 678898888999888763 6677665555665431 1135666533 23344456666666665544
No 52
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=57.72 E-value=17 Score=30.14 Aligned_cols=61 Identities=20% Similarity=0.376 Sum_probs=42.1
Q ss_pred HHHHHHHhhhccCCccceEEE---Ec-CCeEEEEEEecccc-----eeeccCcccHHHHHHHHHHHhCCCCCeEEE
Q 040226 20 ELNEVLTRELAEDGYSGVEVR---VT-PVRTEIIIRATRTQ-----NVLGEKGRRIRELTSVVQKRFKFPENSVEL 86 (137)
Q Consensus 20 ~Ire~l~k~~~~agis~IeI~---R~-~~~i~I~I~~arPg-----~viG~~g~~i~~L~~~L~k~~~~~~~~i~I 86 (137)
++++.|..+.++-.=+-|+|. |- ..+.+|-+++.-|+ .+||.+|.+++.+.+.|. ..+|.|
T Consensus 207 lv~~Lfe~EVPEI~dG~VeIk~iARepG~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~------gekIDI 276 (366)
T 1k0r_A 207 LVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELS------GEKIDI 276 (366)
T ss_dssp HHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTT------TCEEEE
T ss_pred HHHHHHHhcchhhcCCeEEEEEEEecCCCeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhC------CCeEEE
Confidence 455666666664222335554 55 48999999997765 589999999988888764 256664
No 53
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=57.32 E-value=4.1 Score=29.25 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=23.6
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
.+++.|....-|.+||++|..+++|++.
T Consensus 105 ~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 105 EFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 5677778888899999999999988774
No 54
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=56.39 E-value=2.8 Score=29.61 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=24.8
Q ss_pred CeEEEEEEecccceeeccCcccHHHHHHHHH
Q 040226 44 VRTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (137)
Q Consensus 44 ~~i~I~I~~arPg~viG~~g~~i~~L~~~L~ 74 (137)
...++.|....-|.+||++|..+++|++.-.
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tg 119 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTG 119 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHS
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhC
Confidence 4566777777888999999999998877543
No 55
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=55.50 E-value=3.3 Score=29.75 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=23.8
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L 73 (137)
..++.|-...-|.+||++|+.|++|++.-
T Consensus 4 ~~~~~vp~~~vg~iIGkgG~~Ik~i~~~t 32 (174)
T 1j4w_A 4 MIDVPIPRFAVGIVIGRNGEMIKKIQNDA 32 (174)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEChhheeeeecCCchHHHHHHHHh
Confidence 45677777888999999999999988753
No 56
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=53.46 E-value=6.8 Score=34.00 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=40.3
Q ss_pred HHHHHHHHhhh-ccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHH
Q 040226 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKR 76 (137)
Q Consensus 19 ~~Ire~l~k~~-~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~ 76 (137)
..|++-+.+.+ .++.+++||.+ +-+|.|||-.|..+.. +|.-+++|-+.|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 60 (636)
T 2ycb_A 7 EEIKRTIMQRLPERVQVAKVEFE----GPEVVIYTKNPEIITE-NGNLIRDIAKDIRKR 60 (636)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEEE----TTEEEEEESCTHHHHS-CTHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCEEEEEeCCHHHhhc-ccHHHHHHHHHhhce
Confidence 56777788888 57889999985 5788999999998874 455667766666653
No 57
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=51.69 E-value=6.3 Score=34.35 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=39.5
Q ss_pred HHHHHHHHhhh-ccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHH
Q 040226 19 AELNEVLTREL-AEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQK 75 (137)
Q Consensus 19 ~~Ire~l~k~~-~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k 75 (137)
..|++-+.+.+ .++.+++||.+ +-+|.|||-.|..+.. +|.-+++|-+.|+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 63 (640)
T 2xr1_A 11 LDLKHKIEKNLPAGVTITDVEFE----GPQLVLYTEEPRKFAD-DGNIIRNLAKELRT 63 (640)
T ss_dssp HHHHHHHHHHSCTTCCCCCEEEE----TTEEEEEESCHHHHHH-CTHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCCCeEEEEEEE----CCEEEEEeCCHHHhcc-ccHHHHHHHHHhhc
Confidence 56777788888 57899999986 5688999999998874 34556666666664
No 58
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=50.26 E-value=3.3 Score=29.13 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.7
Q ss_pred EEEEEEecccceeeccCcccHHHHHHH
Q 040226 46 TEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 46 i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
+++.|....-|.+||++|..+++|++.
T Consensus 93 ~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 93 IDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp BCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEChhhccccCCCCcHhHHHHHHH
Confidence 667777778899999999999988764
No 59
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=50.25 E-value=22 Score=24.58 Aligned_cols=24 Identities=4% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhccCCccceEEEEc
Q 040226 19 AELNEVLTRELAEDGYSGVEVRVT 42 (137)
Q Consensus 19 ~~Ire~l~k~~~~agis~IeI~R~ 42 (137)
..+++|+++.|+.+.++.++++|.
T Consensus 15 ~~~~~fi~~~fp~~~i~~v~~e~~ 38 (128)
T 3elg_A 15 VAAREMIGKHFSQTKVAYIKIEKD 38 (128)
T ss_dssp HHHHHHHHHHCTTSCEEEEEEEEC
T ss_pred HHHHHHHHHHCCCCceEEEEEEcc
Confidence 568899999999999999999996
No 60
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=49.35 E-value=19 Score=28.35 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=42.6
Q ss_pred HHHHHHhhhccCCccceEEEE-cCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEE
Q 040226 21 LNEVLTRELAEDGYSGVEVRV-TPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86 (137)
Q Consensus 21 Ire~l~k~~~~agis~IeI~R-~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I 86 (137)
..+|+.+-|..|.+.+|.+.- ......|.+--..-+.-||++|++++.-.. +++ ++++|
T Consensus 160 p~~fi~nalsPA~V~~V~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~----Ltg---~~idI 219 (251)
T 2asb_A 160 PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAAR----LTG---WRIDI 219 (251)
T ss_dssp HHHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHH----HHS---CEEEE
T ss_pred HHHHHHhccCCcceEEEEEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHH----HHC---CEecc
Confidence 457889999999999998743 344667777666677899999999854333 333 56665
No 61
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=47.72 E-value=36 Score=22.72 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=35.6
Q ss_pred EecccceeeccCccc---HHHHHHHHHHHhCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHH
Q 040226 51 RATRTQNVLGEKGRR---IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKL 109 (137)
Q Consensus 51 ~~arPg~viG~~g~~---i~~L~~~L~k~~~~~~~~i~I~i~ev~~P~l~A~liA~~ia~qL 109 (137)
|.-+|-+.||++|-+ ++++.+.|+..= -|.|.-..++..+..-+|+.|+++.
T Consensus 16 h~l~pvv~IGk~GlT~~vi~ei~~aL~~~E-------LIKVkvl~~~~~~~~e~a~~la~~t 70 (98)
T 1jo0_A 16 HHLNPVVMLGGNGLTEGVLAEIENALNHHE-------LIKVKVAGADRETKQLIINAIVRET 70 (98)
T ss_dssp TTBCCSEEECTTCSCHHHHHHHHHHHHHHS-------EEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHCC-------eEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 456788999999864 677777777532 2233335566677878888887765
No 62
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=45.11 E-value=24 Score=28.82 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=43.6
Q ss_pred HHHHHHhhhccCCccceEEE-EcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEE
Q 040226 21 LNEVLTRELAEDGYSGVEVR-VTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVEL 86 (137)
Q Consensus 21 Ire~l~k~~~~agis~IeI~-R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I 86 (137)
..+|+.+-|..|-+++|.+. -......|.+.-..-+.-||++|++++.-.. +++ ++++|
T Consensus 279 ~~~fi~nal~Pa~v~~v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~----Ltg---~~idi 338 (344)
T 1hh2_P 279 PKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAK----LTG---WKIDI 338 (344)
T ss_dssp HHHHHHHHTCSSCCSEEEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHH----HHS---CEEEE
T ss_pred HHHHHHHhcCccEEEEEEEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHH----HHC---CEece
Confidence 45789999999999999884 3345777777777778899999999854333 333 56665
No 63
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=44.35 E-value=8 Score=27.34 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEEecccceeeccCcccHHHHHH
Q 040226 46 TEIIIRATRTQNVLGEKGRRIRELTS 71 (137)
Q Consensus 46 i~I~I~~arPg~viG~~g~~i~~L~~ 71 (137)
..|.+....-|.+||++|+.++.+.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~ 94 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVD 94 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHH
Confidence 55666666678899999999988776
No 64
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=42.96 E-value=41 Score=22.83 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=34.9
Q ss_pred EecccceeeccCccc---HHHHHHHHHHHhCCCCCeEEEEEEEecCCCcCHHHHHHHHHHHH
Q 040226 51 RATRTQNVLGEKGRR---IRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKL 109 (137)
Q Consensus 51 ~~arPg~viG~~g~~---i~~L~~~L~k~~~~~~~~i~I~i~ev~~P~l~A~liA~~ia~qL 109 (137)
|.-+|-+.||++|-+ ++++...|.+. .=|. |.-..+...+..-+|+.|+++.
T Consensus 15 h~Lkpvv~IGK~GlTe~vi~ei~~aL~~h-----ELIK--Vkvl~~~~~d~~e~a~~la~~t 69 (104)
T 1rq8_A 15 HNIDPIFQIGKGGINENMIKQIDDTLENR-----ELIK--VHVLQNNFDDKKELAETLSEAT 69 (104)
T ss_dssp TSSCCSCEECSSSCCHHHHHHHHHHHHHS-----SEEE--EEECCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHC-----CcEE--EEEeCCCHHHHHHHHHHHHHHh
Confidence 456788999999864 57777777652 2233 3335566677888888887765
No 65
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=42.95 E-value=6.8 Score=26.30 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=19.0
Q ss_pred EEEEEecccceeeccCcccHHHHHHH
Q 040226 47 EIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 47 ~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
+|.+-...=+.+||++|+.+++|++.
T Consensus 30 ~i~vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 30 SVAAPSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp EEECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred EEEeCHHHHhhhcCCCCccHHHHHHH
Confidence 33333344457999999999999885
No 66
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=41.88 E-value=29 Score=28.72 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=42.5
Q ss_pred HHHHHHhhhccCCccceEEEE-cCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEE
Q 040226 21 LNEVLTRELAEDGYSGVEVRV-TPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY 87 (137)
Q Consensus 21 Ire~l~k~~~~agis~IeI~R-~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~ 87 (137)
..+|+.+-|..|.+.+|.+.- ......|.+.-..-+..||++|++++-... +++ ++|+|.
T Consensus 283 p~~fi~nalsPA~V~~V~~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~----Ltg---~~idI~ 343 (366)
T 1k0r_A 283 PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAAR----LTG---WRIDIR 343 (366)
T ss_dssp HHHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHH----HHC---CEEEEE
T ss_pred HHHHHHHhcCCcceeEEEEEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHH----HHC---Ceeeee
Confidence 467889999999999995543 234666666666667899999988854433 444 667753
No 67
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.99 E-value=33 Score=23.70 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=30.7
Q ss_pred ceeeccCcccHHHHHHHHHHHhCCCCCeEEEE-------------------EEEecCCCcCHHHHHHHHHHHHHc
Q 040226 56 QNVLGEKGRRIRELTSVVQKRFKFPENSVELY-------------------AEKVNNRGLCAIAQAESLRYKLLG 111 (137)
Q Consensus 56 g~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~-------------------i~ev~~P~l~A~liA~~ia~qLe~ 111 (137)
|.|||.+|..+++|.+ .++. +|.|. -..|.-++.++.--|..+.+.|-.
T Consensus 31 g~IIGpgG~tiK~I~~----eTG~---kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~ 98 (119)
T 2yqr_A 31 EKVEGPGCSYLQHIQI----ETGA---KVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQ 98 (119)
T ss_dssp HHHSCGGGHHHHHHHH----HHCC---EEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eeEECCCChHHHHHHH----HHCC---EEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4699999999988776 4552 34432 123445666666666666666643
No 68
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=37.94 E-value=26 Score=20.58 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 64 RRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 64 ~~i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
+-++.|.+.+...++.....+.|.+.|+..
T Consensus 17 ~L~~~it~~~~~~lg~~~~~v~V~i~E~~~ 46 (62)
T 3m20_A 17 EFVERLTSVAAEIYGMDRSAITILIHEPPA 46 (62)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCEEEEECCCG
T ss_pred HHHHHHHHHHHHHhCcCcceEEEEEEEeCH
Confidence 345788889999999877889998888853
No 69
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=36.91 E-value=50 Score=25.79 Aligned_cols=75 Identities=11% Similarity=0.005 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcc-cHHHHHHHHHHHhCCCCCeEEEEEEEec
Q 040226 16 VFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGR-RIRELTSVVQKRFKFPENSVELYAEKVN 92 (137)
Q Consensus 16 ~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~-~i~~L~~~L~k~~~~~~~~i~I~i~ev~ 92 (137)
....+|++.+.+.-.=.++.++.+.+....+-+.+|..-|+-.-=.++. -.+++++.|++.++. ..+.|.+++++
T Consensus 215 ~~~~~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~--~~v~IhveP~~ 290 (306)
T 3j1z_P 215 DTRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED--AEVIIHQDPVQ 290 (306)
T ss_dssp HHHHHHHHHHHHSTTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT--CEEEECCEETT
T ss_pred hHHHHHHHHHhcCCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC--CeEEEEeCCCC
Confidence 4455667766543222345566777777788888888776543222222 347788888888863 56777777664
No 70
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=34.07 E-value=7.6 Score=25.74 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=20.7
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHH
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~ 72 (137)
...+.|-..+-+.+||++|+.|++|.+.
T Consensus 18 t~~i~Ip~~~i~~iIG~gGk~Ir~I~ee 45 (95)
T 2ctj_A 18 EVEVSIPAKLHNSLIGTKGRLIRSIMEE 45 (95)
T ss_dssp CEEEECCHHHHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEECHHHHhhhCCCCchhHHHHHHH
Confidence 3445555566678999999999888764
No 71
>3gp2_B Calcium/calmodulin-dependent protein kinase type II delta chain; metal binding protein, ATP-binding, calmodulin- binding, nucleotide-binding; 1.46A {Homo sapiens}
Probab=33.65 E-value=31 Score=17.25 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=14.8
Q ss_pred ChHHHHHHH-HHHHHHhccc
Q 040226 112 GLAVRRYIL-IISQILSNKA 130 (137)
Q Consensus 112 Rv~fRRa~k-ai~~a~~~ga 130 (137)
+..+||.+| +|..++-+.|
T Consensus 2 kFNaRRKLK~aIl~~~~~t~ 21 (22)
T 3gp2_B 2 SFNARRKLKGAILTTMLATA 21 (26)
T ss_pred cccHHHHHHHHHHHHHHHhc
Confidence 456899999 9988877653
No 72
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=32.78 E-value=50 Score=19.53 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHhCCCCCeEEEEEEEecCC
Q 040226 65 RIRELTSVVQKRFKFPENSVELYAEKVNNR 94 (137)
Q Consensus 65 ~i~~L~~~L~k~~~~~~~~i~I~i~ev~~P 94 (137)
-++.|.+.+...++.....+.|.+.|+..-
T Consensus 22 l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~ 51 (67)
T 3m21_A 22 LIEGVSDLMVKVLNKNKASIVVIIDEVDSN 51 (67)
T ss_dssp HHHHHHHHHHHHHCCCGGGCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHCcCcccEEEEEEEeCHH
Confidence 357888888889998777899989998643
No 73
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=32.52 E-value=6.3 Score=32.75 Aligned_cols=21 Identities=5% Similarity=0.188 Sum_probs=17.0
Q ss_pred cceeeccCc--ccHHHHHHHHHH
Q 040226 55 TQNVLGEKG--RRIRELTSVVQK 75 (137)
Q Consensus 55 Pg~viG~~g--~~i~~L~~~L~k 75 (137)
=+.+||++| +.|++|++.-.-
T Consensus 41 Hs~IIGkgG~~sNIkkImeEtgv 63 (376)
T 3n89_A 41 YSLMTSDNGDHENVASIMAETNT 63 (376)
T ss_dssp HHHHHSCCSSSCSHHHHHHHHTC
T ss_pred hhhhccCCChHHHHHHHHHHhCC
Confidence 357999999 999999886543
No 74
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=31.42 E-value=50 Score=22.23 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=32.8
Q ss_pred EcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 41 VTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 41 R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
|+..-+.|.|. .+|.=...+.+-.+.|.+.|.+.++..+..+.|.+.|+..
T Consensus 62 ~~~~~~~I~i~--~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~ 112 (131)
T 2aal_A 62 RSSAVVLLTVI--SRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVENSD 112 (131)
T ss_dssp CCTTCEEEEEE--ESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCG
T ss_pred CCCCeEEEEEE--eCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCH
Confidence 33345555555 3332112223345788888999999877889999999874
No 75
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=29.69 E-value=1.1e+02 Score=24.95 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=37.8
Q ss_pred HHHHHHHhhhccCCccceEE---EEc-CCeEEEEEEecccce-----eeccCcccHHHHHHHHH
Q 040226 20 ELNEVLTRELAEDGYSGVEV---RVT-PVRTEIIIRATRTQN-----VLGEKGRRIRELTSVVQ 74 (137)
Q Consensus 20 ~Ire~l~k~~~~agis~IeI---~R~-~~~i~I~I~~arPg~-----viG~~g~~i~~L~~~L~ 74 (137)
.++.+|.-+.++-.=+-|+| -|. ..+..|-+++.-|++ ++|.+|.++..+.+.|.
T Consensus 203 ~lk~LfelEVPEI~dG~VeI~~iaRepG~R~KiAV~s~d~~iDpvGacvg~~G~ri~~i~~el~ 266 (344)
T 1hh2_P 203 FVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVASNDPNVDPIGACIGEGGSRIAAILKELK 266 (344)
T ss_dssp HHHHHHHHHCHHHHHSSEEEEEEEEETTTEEEEEEEESSTTSCHHHHHHCTTSTTHHHHHHHTT
T ss_pred HHHHHHHhhcccceeeeEEEEEeecccccccceeEEccCCCccccceeeccCCcEeHHHHHHhC
Confidence 34455555554421122555 455 479999999988864 88999999999888775
No 76
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=29.42 E-value=78 Score=18.01 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 65 RIRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 65 ~i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
-.+.|.+.|.+.++.....+.|.+.++..
T Consensus 20 l~~~lt~~l~~~lg~~~~~v~V~i~e~~~ 48 (64)
T 3abf_A 20 LVRRLTEMASRLLGEPYEEVRVILYEVRR 48 (64)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEEECG
T ss_pred HHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 35788888998999877789999998864
No 77
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=29.27 E-value=56 Score=23.75 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.9
Q ss_pred cccceeeccCcccHHHHHHHHHHHhC
Q 040226 53 TRTQNVLGEKGRRIRELTSVVQKRFK 78 (137)
Q Consensus 53 arPg~viG~~g~~i~~L~~~L~k~~~ 78 (137)
+||=++.|.+|.+...|.+.|.+.+.
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 58989999999999999999987763
No 78
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=28.05 E-value=1.3e+02 Score=21.81 Aligned_cols=40 Identities=13% Similarity=0.388 Sum_probs=32.6
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEE
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ 89 (137)
.+.++|-+.+|.+ +.-+++.++.|.+.++....+|+|+.+
T Consensus 93 NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 132 (152)
T 1iv3_A 93 QASLVLTLDRPKL-----GPHRKALVDSLSRLMRLPQDRIGLTFK 132 (152)
T ss_dssp EEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred EEEEEEEecCCcC-----HHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 5667888999966 677899999999999986667887654
No 79
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=27.89 E-value=41 Score=25.53 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred CCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCC--CCCeEEEEEEEecCCC----cCHHHHHHHHHHHHHc
Q 040226 43 PVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKF--PENSVELYAEKVNNRG----LCAIAQAESLRYKLLG 111 (137)
Q Consensus 43 ~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~--~~~~i~I~i~ev~~P~----l~A~liA~~ia~qLe~ 111 (137)
|...++.|-..+-|.+||++|+.++.|.+...-.... .+..|. |..++ .++..-|..+...+-+
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~-----I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVW-----ITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEE-----EEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEE-----EecCCCCCCHHHHHHHHHHHHHHhc
Confidence 5566777778888899999999999888754321111 122333 33333 4566666666665553
No 80
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=27.43 E-value=74 Score=22.78 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=32.7
Q ss_pred EcCCeEEEEE-EecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 41 VTPVRTEIII-RATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 41 R~~~~i~I~I-~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
|+.+.+.|.| ++++.|.=...+-.-.+.|.+.|+..++.....+.|++.|...
T Consensus 78 ~~~~~v~I~I~~~a~~gRt~eqK~~l~~~l~~~L~~~~gi~~~dv~I~I~E~~~ 131 (161)
T 3c6v_A 78 QHPNFVALTIYHLARTMTSDEQRQGFLKRIDAFLTPMFEPKGIDWEYFVTEAPR 131 (161)
T ss_dssp ECSSEEEEEEEEETTSCCSHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEEECG
T ss_pred ccCCEEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEEcCc
Confidence 4555666666 2334333222333345778888888888767788888887753
No 81
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=27.20 E-value=64 Score=19.35 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 65 RIRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 65 ~i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
-++.|.+.+...++.....+.|.+.|+..
T Consensus 20 L~~~it~~l~~~lg~p~~~v~V~i~e~~~ 48 (72)
T 3mb2_A 20 LARALSAAAAAAFDVPLAEVRLIIQEVPP 48 (72)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEEEECG
T ss_pred HHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 35778888888999877789999999863
No 82
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=26.59 E-value=1.4e+02 Score=21.77 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=37.4
Q ss_pred hhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEE
Q 040226 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (137)
Q Consensus 28 ~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ 89 (137)
.+.+.||. ...+.++|-+.+|.+ +.-+++.++.|.+.++....+|+|+.+
T Consensus 85 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 134 (159)
T 1t0a_A 85 LAKAKGFE-------LGNLDVTIIAQAPKM-----APHIEDMRQVLAADLNADVADINVKAT 134 (159)
T ss_dssp HHHHTTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcC-----hHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 44556653 235677888999966 678899999999999986667887554
No 83
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=26.30 E-value=1.4e+02 Score=21.76 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=32.4
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEE
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ 89 (137)
.+.++|-+.+|.+ +.-+++.++.|.+.++....+|+|+.+
T Consensus 96 NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 135 (160)
T 2pmp_A 96 NLDATLILQRPKI-----SPHKETIRSNLSKLLGADPSVVNLKAK 135 (160)
T ss_dssp EEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred EEEEEEEecCCcC-----HHHHHHHHHHHHHHHCCCcceEEEEEe
Confidence 5677888999966 678899999999999986667886554
No 84
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=26.03 E-value=1.2e+02 Score=18.76 Aligned_cols=73 Identities=12% Similarity=0.035 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHhh--hccCCccceEEEEcCCeEEEEEEecccceee-ccCcccHHHHHHHHHHHhCCCCCeEEEEEE
Q 040226 15 GVFFAELNEVLTRE--LAEDGYSGVEVRVTPVRTEIIIRATRTQNVL-GEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (137)
Q Consensus 15 ~~~~~~Ire~l~k~--~~~agis~IeI~R~~~~i~I~I~~arPg~vi-G~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ 89 (137)
......|++.+... -.=.++-++.+.+.....-+.+|...|+-.- .....-.++++..|++.|+. -.+.|.++
T Consensus 9 ~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~--~~vtIh~e 84 (94)
T 3byp_A 9 PEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG--LQATIHVE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT--EEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC--CEEEEEeC
Confidence 34456677777543 1122344556666666788888888775432 22233458888888888863 35666555
No 85
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=25.93 E-value=1.5e+02 Score=21.69 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=37.2
Q ss_pred hhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEE
Q 040226 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (137)
Q Consensus 28 ~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ 89 (137)
.+.+.||. ...+.++|-+.+|.+ +.-+++.++.|.+.++....+|+|+.+
T Consensus 84 ~v~~~G~~-------i~NvD~tii~q~PKi-----~p~~~~m~~~ia~~L~~~~~~V~vKAt 133 (160)
T 1gx1_A 84 RIQAKGYT-------LGNVDVTIIAQAPKM-----LPHIPQMRVFIAEDLGCHMDDVNVKAT 133 (160)
T ss_dssp HHHHTTCE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcc-----hHHHHHHHHHHHHHhCCCCceEEEEEc
Confidence 44555653 235677888999976 678899999999999986667886554
No 86
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=25.37 E-value=1.5e+02 Score=21.72 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=32.3
Q ss_pred eEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEE
Q 040226 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (137)
Q Consensus 45 ~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ 89 (137)
.+.++|-+.+|.+ +.-+++.++.|.+.++....+|+|+.+
T Consensus 99 NvD~tii~q~PKl-----~p~~~~m~~~la~~L~~~~~~V~vKAt 138 (162)
T 3re3_A 99 NIDCTIIAQAPKM-----LPHIEKMRACLANILEIQISQINIKAT 138 (162)
T ss_dssp EEEEEEECSSSCC-----GGGHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred EEEEEEEcCCCcc-----hhHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 4667888999976 667899999999999986667887654
No 87
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=25.04 E-value=89 Score=17.54 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 66 IRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 66 i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
.+.|.+.|.+.++.....+.|.+.|+..
T Consensus 20 ~~~i~~~l~~~lg~~~~~v~V~i~e~~~ 47 (61)
T 2opa_A 20 VEKVTEAVKETTGASEEKIVVFIEEMRK 47 (61)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEEECG
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEEEcCH
Confidence 4778888888899877788998998864
No 88
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=24.79 E-value=1.5e+02 Score=19.25 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhccCCccc---eEEEEcCCeEEEEEEeccccee-eccCcccHHHHHHHHHHHhCCCCCeEEEEEEEe
Q 040226 17 FFAELNEVLTRELAEDGYSG---VEVRVTPVRTEIIIRATRTQNV-LGEKGRRIRELTSVVQKRFKFPENSVELYAEKV 91 (137)
Q Consensus 17 ~~~~Ire~l~k~~~~agis~---IeI~R~~~~i~I~I~~arPg~v-iG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev 91 (137)
....|++.+.. -.|+.+ +.+.+....+-+.++...|+-+ +...-.-.++++..|++.|+. -..+.|.++..
T Consensus 11 ~~~~I~~~l~~---~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~-i~~vtIhvEp~ 85 (107)
T 2zzt_A 11 MYDDIFAVLER---FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDD-IEDVTIHVEPL 85 (107)
T ss_dssp HHHHHHHHHTT---CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTT-CCEEEEEEEET
T ss_pred HHHHHHHHHHc---CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC-CcEEEEEEecC
Confidence 44566666642 244444 5566556667788887776543 222223457888888888862 14677777753
No 89
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=24.76 E-value=1.1e+02 Score=19.81 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 65 RIRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 65 ~i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
-.+.|.+.|++.++..+..+.|.+.|+..
T Consensus 76 l~~~i~~~l~~~lgi~~~~v~I~~~e~~~ 104 (115)
T 2xcz_A 76 VSELVCGHIEQNLGIPADRIYIGFEDVPA 104 (115)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEECCG
T ss_pred HHHHHHHHHHHHhCcCcccEEEEEEECCH
Confidence 35788889999999888889999988863
No 90
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=24.09 E-value=1.6e+02 Score=21.99 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=37.1
Q ss_pred hhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEE
Q 040226 28 ELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAE 89 (137)
Q Consensus 28 ~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ 89 (137)
.+.+.||. ...+.++|-+.+|.+ +.-+++.++.|.+.++....+|+|+.+
T Consensus 106 lv~~~G~~-------I~NvD~tIiaq~PKl-----~p~~~~mr~~la~~L~i~~~~VnVKAT 155 (183)
T 3f0d_A 106 RVAQAGFA-------IRNVDSTIIAQAPKL-----APHIDAMRANIAADLDLPLDRVNVKAK 155 (183)
T ss_dssp HHHHTTEE-------EEEEEEEEECSSSCC-----GGGHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHcCCE-------EEEEEEEEEcCCCcc-----hhHHHHHHHHHHHHHCCCcceEEEEEe
Confidence 44556654 235667888999966 667899999999999986667887554
No 91
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.84 E-value=93 Score=20.71 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=33.2
Q ss_pred hhhccCCccceEEEEcC-----CeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEE
Q 040226 27 RELAEDGYSGVEVRVTP-----VRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVE 85 (137)
Q Consensus 27 k~~~~agis~IeI~R~~-----~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~ 85 (137)
++|...|+.-+.|.... ..+.+.+. -...+.+|++.++..++.+..+..
T Consensus 8 ~~f~~tg~ati~V~~~~~~~~~~~~~lev~----------~~~TV~~lK~kI~~k~gip~~qQr 61 (100)
T 1wju_A 8 DNYRTTGIATIEVFLPPRLKKDRKNLLETR----------LHITGRELRSKIAETFGLQENYIK 61 (100)
T ss_dssp CSSSCCCEEEEEEECCTTTCCSSSEEEEEE----------SSSBHHHHHHHHHHHTTCCSTTCE
T ss_pred hhhhhcceEEEEEEecCCCCCCcEEEEEeC----------CcCHHHHHHHHHHHHHCcCHHHeE
Confidence 56788899988886433 13333332 246789999999999997644433
No 92
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=23.69 E-value=78 Score=21.05 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 65 RIRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 65 ~i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
-.+.|.+.|.+.++..+..+.|.+.|+..
T Consensus 78 l~~~l~~~l~~~lg~~~~~v~V~i~e~~~ 106 (128)
T 1mww_A 78 LIKMLFSELEYKLGIRAHDVEITIKEQPA 106 (128)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEEECG
T ss_pred HHHHHHHHHHHHhCcChhhEEEEEEECCH
Confidence 35788889999999888899999999874
No 93
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=23.66 E-value=1.1e+02 Score=19.74 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=25.2
Q ss_pred HHHHHHHhhhccCCccceEEEEcCCeEEEEEE
Q 040226 20 ELNEVLTRELAEDGYSGVEVRVTPVRTEIIIR 51 (137)
Q Consensus 20 ~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~ 51 (137)
++-+.+...+.+-||.+|.+.-+...+.|.+.
T Consensus 64 elleliarllqklgykdinvrvngtevkievr 95 (96)
T 2jvf_A 64 ELLELIARLLQKLGYKDINVRVNGTEVKIEVR 95 (96)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEcCEEEEEEEe
Confidence 34567778888999999999888887777654
No 94
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=23.64 E-value=69 Score=23.84 Aligned_cols=72 Identities=13% Similarity=0.132 Sum_probs=44.5
Q ss_pred EEEEEecccceeeccCcccHHHHHHHHHHHhC--CCCCeEEEEEEEe-cCCCcCHHHHHHHHHHHHHcChHHHHHHH
Q 040226 47 EIIIRATRTQNVLGEKGRRIRELTSVVQKRFK--FPENSVELYAEKV-NNRGLCAIAQAESLRYKLLGGLAVRRYIL 120 (137)
Q Consensus 47 ~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~--~~~~~i~I~i~ev-~~P~l~A~liA~~ia~qLe~Rv~fRRa~k 120 (137)
.|.|=..+-|.++|+.|+.++.|.+...-... ..++.+.| ... ...+.++..-|..+...+-...++-.|++
T Consensus 7 ~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i--~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~ 81 (191)
T 1tua_A 7 YVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIV--EPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFR 81 (191)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEE--EESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGG
T ss_pred EEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEE--EeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhh
Confidence 44444455678999999888888775442221 22344443 211 12445677888888888887777766653
No 95
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=22.99 E-value=1e+02 Score=17.29 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEEecC
Q 040226 66 IRELTSVVQKRFKFPENSVELYAEKVNN 93 (137)
Q Consensus 66 i~~L~~~L~k~~~~~~~~i~I~i~ev~~ 93 (137)
.+.|.+.|.+.++.....+.|.+.|+..
T Consensus 20 ~~~i~~~l~~~lg~p~~~v~v~i~e~~~ 47 (62)
T 1otf_A 20 IRQVSEAMANSLDAPLERVRVLITEMPK 47 (62)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEEECG
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEeCH
Confidence 4778888888899877788888888863
No 96
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=22.62 E-value=64 Score=22.23 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=33.1
Q ss_pred EEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeEEEEEEEecCC
Q 040226 40 RVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNR 94 (137)
Q Consensus 40 ~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i~I~i~ev~~P 94 (137)
.|+.+.+.|.|.... |.=...+-+-++.|.+.| ..++..+..|.|.+.|+...
T Consensus 60 ~rs~~~v~I~I~~~~-gRt~EqK~~L~~~it~~l-~~lg~~~~~v~V~i~E~~~~ 112 (136)
T 3mlc_A 60 QRSPSVVIIHVFTQA-GRTIETKQRVFAAITESL-APIGVAGSDVFIAITENAPH 112 (136)
T ss_dssp CCCSCCEEEEEEEET-TCCHHHHHHHHHHHHHHH-TTTTCCGGGEEEEEEEECGG
T ss_pred CCCCCeEEEEEEECC-CCCHHHHHHHHHHHHHHH-HHcCCCcccEEEEEEEcCHH
Confidence 455555666655421 111122233357788888 88888778899999998643
No 97
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=21.49 E-value=1.6e+02 Score=19.61 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHhhHHHHHHHHHHHhhhccCCccceEEEEcCCeEEEEEEecccceeeccCcccHHHHHHHHHHHhCCCCCeE
Q 040226 11 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSV 84 (137)
Q Consensus 11 fi~~~~~~~~Ire~l~k~~~~agis~IeI~R~~~~i~I~I~~arPg~viG~~g~~i~~L~~~L~k~~~~~~~~i 84 (137)
|+.|.--.....|-+...+.+.||..+++--...+|.|..-++--.+--..=...-..--..|..+|++ ++.+
T Consensus 18 fvddsdrftafeeellaryadkgirsvdvaayakgidivfvaadrkmtraefsaiasrsirelkerfgf-dkdv 90 (115)
T 4hlb_A 18 FVDDSDRFTAFEEELLARYADKGIRSVDVAAYAKGIDIVFVAADRKMTRAEFSAIASRSIRELKERFGF-DKDV 90 (115)
T ss_dssp ---CTTTTHHHHHHHHHHHGGGTEEEEEEEECSSCEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTC-CTTS
T ss_pred EecccchhhHHHHHHHHHHhhcCcceeeHHHHhcCCcEEEEeccchhhHHHHHHHHHHHHHHHHHHhCC-CcCC
Confidence 454443333444555567789999999998888899886555432221000011112333456668886 3444
No 98
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.28 E-value=24 Score=24.73 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=15.1
Q ss_pred ccceeeccCcccHHHHHHH
Q 040226 54 RTQNVLGEKGRRIRELTSV 72 (137)
Q Consensus 54 rPg~viG~~g~~i~~L~~~ 72 (137)
+-|.|||.+|..+++|.+.
T Consensus 23 ~iG~IIGP~G~tiK~Iq~e 41 (131)
T 1k1g_A 23 FVGLLIGPRGNTLKNIEKE 41 (131)
T ss_dssp HHHHHHCSSSHHHHHHHHH
T ss_pred eeeeEECCCcHHHHHHHHH
Confidence 3367999999999887663
Done!