BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040228
(831 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 380 SFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIR 439
SF + ++F Y K PW+Q + E +L+ P ++ ++R
Sbjct: 245 SFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVY----------AIMR 294
Query: 440 FCLRRRPEKRHRVKN 454
C +R P++RH +K+
Sbjct: 295 GCWQREPQQRHSIKD 309
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 380 SFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIR 439
SF + ++F Y K PW+Q + E +L+ P ++ ++R
Sbjct: 216 SFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVY----------AIMR 265
Query: 440 FCLRRRPEKRHRVKN 454
C +R P++RH +K+
Sbjct: 266 GCWQREPQQRHSIKD 280
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 380 SFFAKILQLFLYFKSPWWQDYHWEENVTDKSNVKLKHQLLATPTLFRRWSGYVSGHNLIR 439
SF + ++F Y K PW+Q + E +L+ P ++ ++R
Sbjct: 222 SFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVY----------AIMR 271
Query: 440 FCLRRRPEKRHRVKN 454
C +R P++RH +K+
Sbjct: 272 GCWQREPQQRHSIKD 286
>pdb|3ICV|A Chain A, Structural Consequences Of A Circular Permutation On
Lipase B From Candida Antartica
pdb|3ICW|A Chain A, Structure Of A Circular Permutation On Lipase B From
Candida Antartica With Bound Suicide Inhibitor
Length = 316
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 42 GSGNKLLVMLIWS-AYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLH 100
GSGN L +L WS L+A W + PS ++L+AF P +
Sbjct: 127 GSGNNKLPVLTWSQGGLVAQWGLTFF-------------PSIRSKVDRLMAFAPDYKGTV 173
Query: 101 LGGPDTITALALEDNELWLRHSLGLITQA 129
L GP + ALA+ +W + + +T A
Sbjct: 174 LAGP--LDALAVSAPSVWQQTTGSALTTA 200
>pdb|1TCB|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCB|B Chain B, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCC|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCC|B Chain B, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1LBS|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|C Chain C, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|D Chain D, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|E Chain E, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|F Chain F, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBT|A Chain A, Lipase (e.c.3.1.1.3) (triacylglycerol Hydrolase)
pdb|1LBT|B Chain B, Lipase (e.c.3.1.1.3) (triacylglycerol Hydrolase)
pdb|1TCA|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
Length = 317
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 42 GSGNKLLVMLIWS-AYLLADWAANYAVGLISDSQGDNPGPSDPKHNNQLLAFWPTFLLLH 100
GSGN L +L WS L+A W + PS ++L+AF P +
Sbjct: 93 GSGNNKLPVLTWSQGGLVAQWGLTFF-------------PSIRSKVDRLMAFAPDYKGTV 139
Query: 101 LGGPDTITALALEDNELWLRHSLGLITQA 129
L GP + ALA+ +W + + +T A
Sbjct: 140 LAGP--LDALAVSAPSVWQQTTGSALTTA 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,373,872
Number of Sequences: 62578
Number of extensions: 988371
Number of successful extensions: 2736
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2733
Number of HSP's gapped (non-prelim): 7
length of query: 831
length of database: 14,973,337
effective HSP length: 107
effective length of query: 724
effective length of database: 8,277,491
effective search space: 5992903484
effective search space used: 5992903484
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)