BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040228
         (831 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5LLM0|MIAB_RUEPO (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /
           DSS-3) GN=miaB PE=3 SV=2
          Length = 439

 Score = 36.6 bits (83), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 65/172 (37%), Gaps = 17/172 (9%)

Query: 81  SDPK------HNNQLLAFWPTFLLLHLGGPDTITALALEDNELWLRHSLGLITQAASAVY 134
           SDPK      +  Q+  +    +   LGG   +   + ED ++ L ++  +  +AA  VY
Sbjct: 2   SDPKKLFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVY 61

Query: 135 VFLLSLPNNKVLVPSILMFIAGVIKYFERSRALYLGSVDRFRESMLSDADPGPNYAKLME 194
             L      K   P + + +AG +   E    +        R   L D   GP     + 
Sbjct: 62  SELGRFKGLKAAKPDLKIGVAGCVAQAEGEEIM--------RRQPLVDLVVGPQSYHRLP 113

Query: 195 EYESKIKAQLPARIITIPEAEK--KLKVELK-KRALTNLDVVHYAHHYFSIF 243
           E E+K +A   A     PE +K  KLK   K KR  T    V      F  F
Sbjct: 114 ELEAKTRAGEKALDTDFPEEDKFEKLKGRPKAKRGPTAFLTVQEGCDKFCAF 165


>sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT
           PE=1 SV=1
          Length = 355

 Score = 33.1 bits (74), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 585 ESISSAKG---EWIMQDW-DPDGMRIKELLSYVTDVAYDESILLWHIATELLYFEDKKDE 640
           E I SA     +WI+ DW D D ++I +           + I++     +++ + DKKD+
Sbjct: 245 EKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKGGKVIII-----DMVMYSDKKDD 299

Query: 641 HRTSGTTSDDNT--IDESTKEALQKEYNDLEFSKLLSDYMMY 680
           H     TS D    ++ + KE  +KE+  L      SDY +Y
Sbjct: 300 HLVKTQTSMDMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIY 341


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,200,088
Number of Sequences: 539616
Number of extensions: 12991441
Number of successful extensions: 40792
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 40785
Number of HSP's gapped (non-prelim): 18
length of query: 831
length of database: 191,569,459
effective HSP length: 126
effective length of query: 705
effective length of database: 123,577,843
effective search space: 87122379315
effective search space used: 87122379315
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 66 (30.0 bits)