Query 040228
Match_columns 831
No_of_seqs 151 out of 571
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_v 60S acidic ribosomal pr 25.1 25 0.00085 31.8 1.4 20 94-113 5-24 (113)
2 2lbf_B 60S acidic ribosomal pr 20.6 36 0.0012 28.0 1.4 19 94-112 6-24 (70)
3 3izc_v 60S acidic ribosomal pr 18.5 40 0.0014 30.1 1.3 19 94-113 5-23 (106)
4 3bp3_A Glucose-specific phosph 8.0 1.2E+02 0.0042 25.4 1.1 17 94-110 7-23 (82)
5 1qey_A MNT-C, protein (regulat 7.1 1.9E+02 0.0065 19.8 1.4 16 559-574 11-26 (31)
6 1iba_A Glucose permease; phosp 6.8 1.7E+02 0.0059 25.7 1.5 17 94-110 16-32 (101)
7 2lx0_A Membrane fusion protein 5.2 4.2E+02 0.014 17.6 2.2 16 764-780 4-19 (32)
8 3dwa_A SUBB, subtilase cytotox 5.1 1.6E+02 0.0055 26.7 0.3 24 106-129 41-64 (126)
9 3dt5_A Uncharacterized protein 4.7 2.6E+02 0.009 24.1 1.3 22 101-122 77-98 (135)
10 3ggz_E Vacuolar protein-sortin 4.5 2.9E+02 0.0099 18.8 1.1 10 159-168 19-28 (29)
No 1
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=25.09 E-value=25 Score=31.83 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.0
Q ss_pred hHHHHHhhcCCCcccccccc
Q 040228 94 PTFLLLHLGGPDTITALALE 113 (831)
Q Consensus 94 APfLLlHLGG~DtITAySlE 113 (831)
|..||+||||..+||+-.|+
T Consensus 5 aAylL~~l~G~~~ptad~I~ 24 (113)
T 3iz5_v 5 AAYLLAYLSGNASPSAEDLT 24 (113)
T ss_dssp HHHHHHHHHTCCCCTTTTHH
T ss_pred HHHHHHHHcCCCCCCHHHHH
Confidence 56899999999999987654
No 2
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=20.62 E-value=36 Score=28.04 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=14.4
Q ss_pred hHHHHHhhcCCCccccccc
Q 040228 94 PTFLLLHLGGPDTITALAL 112 (831)
Q Consensus 94 APfLLlHLGG~DtITAySl 112 (831)
+..||+|+||..+||+=.+
T Consensus 6 yA~Lll~~~g~~~~ta~~I 24 (70)
T 2lbf_B 6 ASYLLAALGGNSSPSAKDI 24 (70)
T ss_dssp HHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHhCCCCCCCHHHH
Confidence 4568899999888887443
No 3
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=18.46 E-value=40 Score=30.11 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.8
Q ss_pred hHHHHHhhcCCCcccccccc
Q 040228 94 PTFLLLHLGGPDTITALALE 113 (831)
Q Consensus 94 APfLLlHLGG~DtITAySlE 113 (831)
|..||+|+||.+ ||+=.|+
T Consensus 5 aAyLL~~~gG~e-~tad~I~ 23 (106)
T 3izc_v 5 AAYLLLNAAGNT-PDATKIK 23 (106)
T ss_dssp HHHHHHHHHTCC-CTTTTHH
T ss_pred HHHHHHHhcCCC-CCHHHHH
Confidence 567999999999 9986554
No 4
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=7.96 E-value=1.2e+02 Score=25.42 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=13.9
Q ss_pred hHHHHHhhcCCCccccc
Q 040228 94 PTFLLLHLGGPDTITAL 110 (831)
Q Consensus 94 APfLLlHLGG~DtITAy 110 (831)
|.-++-.|||.|||...
T Consensus 7 a~~ii~~lGG~~NI~~v 23 (82)
T 3bp3_A 7 APALVAAFGGKENITNL 23 (82)
T ss_dssp HHHHHHHTTCGGGEEEE
T ss_pred HHHHHHHhCCHHHHhhh
Confidence 55688899999999874
No 5
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=7.07 E-value=1.9e+02 Score=19.81 Aligned_cols=16 Identities=6% Similarity=0.233 Sum_probs=13.4
Q ss_pred cCHhHHHHHHHHHHHh
Q 040228 559 FTKELWQFIFKEIETK 574 (831)
Q Consensus 559 v~~~vk~~I~~~l~~~ 574 (831)
.++.+|+.+|+.|++.
T Consensus 11 qse~vKk~vfdtLk~~ 26 (31)
T 1qey_A 11 QSELVKKMVFDTLKDL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5778999999999873
No 6
>1iba_A Glucose permease; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane, inner membrane, phoshphotransferase; NMR {Escherichia coli} SCOP: d.95.1.1
Probab=6.82 E-value=1.7e+02 Score=25.70 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.8
Q ss_pred hHHHHHhhcCCCccccc
Q 040228 94 PTFLLLHLGGPDTITAL 110 (831)
Q Consensus 94 APfLLlHLGG~DtITAy 110 (831)
|.-+|-.|||.|||+..
T Consensus 16 A~~Ii~alGG~eNI~~v 32 (101)
T 1iba_A 16 APALVAAFGGKENITNL 32 (101)
T ss_dssp HHHHTHHHHTCTTCSBC
T ss_pred HHHHHHHhCCHHHHhhh
Confidence 66789999999999985
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=5.18 E-value=4.2e+02 Score=17.63 Aligned_cols=16 Identities=25% Similarity=0.764 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHhHh
Q 040228 764 DRWELMSKVWLELLSYA 780 (831)
Q Consensus 764 ~~WevIa~VWvEmL~Ya 780 (831)
.-||+|++. |-+|-+.
T Consensus 4 tiweviagl-valltfl 19 (32)
T 2lx0_A 4 TIWEVIAGL-VALLTFL 19 (32)
T ss_dssp SSHHHHHHH-HHHHHHH
T ss_pred hHHHHHHHH-HHHHHHH
Confidence 458888875 3344433
No 8
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=5.12 E-value=1.6e+02 Score=26.73 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.5
Q ss_pred cccccccchhhhhhHHHHhhhhhe
Q 040228 106 TITALALEDNELWLRHSLGLITQA 129 (831)
Q Consensus 106 tITAySlEDN~LW~Rhll~L~~Qv 129 (831)
+++|.++.|+.-|++++=+++-|+
T Consensus 41 ~v~aCaV~~~s~~~~~Fd~~~~~A 64 (126)
T 3dwa_A 41 SISACSMKNSSVWGASFSTLYNQA 64 (126)
T ss_dssp EEEEEEETTCSSSGGGHHHHHHHH
T ss_pred ceeEEEEeccccccccHHHHHHHh
Confidence 699999999999999999999887
No 9
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=4.67 E-value=2.6e+02 Score=24.10 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.2
Q ss_pred hcCCCcccccccchhhhhhHHH
Q 040228 101 LGGPDTITALALEDNELWLRHS 122 (831)
Q Consensus 101 LGG~DtITAySlEDN~LW~Rhl 122 (831)
..|.-+-|-|+-||.|+|+..+
T Consensus 77 iagsanwtfyakedfeqwkeal 98 (135)
T 3dt5_A 77 IAGSANWTFYAKEDFEQWKEAL 98 (135)
T ss_dssp CTTCSSEEESSHHHHHHHHHHH
T ss_pred hccccceeEEeHhhHHHHHHHH
Confidence 5788889999999999999864
No 10
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=4.47 E-value=2.9e+02 Score=18.75 Aligned_cols=10 Identities=50% Similarity=0.484 Sum_probs=7.9
Q ss_pred hhhhhHHHHh
Q 040228 159 KYFERSRALY 168 (831)
Q Consensus 159 KygER~wAL~ 168 (831)
|.+||.-|||
T Consensus 19 kLAqRLRALR 28 (29)
T 3ggz_E 19 KLAQRLRALR 28 (29)
T ss_pred HHHHHHHHHc
Confidence 6778888887
Done!