Query 040228
Match_columns 831
No_of_seqs 151 out of 571
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 09:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040228.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040228hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bp8c1 d.95.1.1 (C:13-87) Glu 19.6 20 0.0015 27.9 1.7 17 94-110 2-18 (75)
2 d1st6a3 a.24.9.1 (A:253-371) V 9.7 2.4E+02 0.017 23.4 6.0 70 683-759 32-106 (119)
3 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 6.3 1.6E+02 0.012 21.4 2.8 21 752-772 11-33 (59)
4 d2p06a1 a.204.1.3 (A:1-84) Hyp 6.0 1.5E+02 0.011 21.9 2.4 17 667-683 63-79 (84)
5 d1jb0m_ f.23.19.1 (M:) Subunit 5.3 75 0.0054 19.8 0.3 14 619-632 17-30 (31)
6 d1q90l_ f.23.24.1 (L:) PetL su 3.6 3.4E+02 0.024 16.6 2.4 14 332-345 4-18 (32)
7 d1st6a5 a.24.9.1 (A:489-646) V 3.5 8.2E+02 0.06 20.8 6.1 30 684-715 17-46 (158)
8 d1o65a_ b.58.1.2 (A:) Hypothet 3.3 1E+02 0.0076 28.8 -0.3 25 100-124 57-82 (233)
9 d2r6gf2 f.58.1.1 (F:261-504) M 3.2 1.1E+03 0.083 20.2 7.5 49 25-73 34-82 (244)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 2.8 6E+02 0.043 15.2 3.0 10 332-341 3-12 (30)
No 1
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB {Escherichia coli [TaxId: 562]}
Probab=19.61 E-value=20 Score=27.94 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=13.7
Q ss_pred hHHHHHhhcCCCccccc
Q 040228 94 PTFLLLHLGGPDTITAL 110 (831)
Q Consensus 94 APfLLlHLGG~DtITAy 110 (831)
|+-++-+|||.|||+..
T Consensus 2 A~~ii~~lGG~~NI~~~ 18 (75)
T d3bp8c1 2 APALVAAFGGKENITNL 18 (75)
T ss_dssp HHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 56678889999998875
No 2
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.65 E-value=2.4e+02 Score=23.41 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=42.2
Q ss_pred HhCCCccccccccchHHHHHHHHHHHHHHhhcccChH---HHHHHHHHhhcccCC--CccccCCCCcchhhhHHHHHHHH
Q 040228 683 IMQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKVLSDE---KEACEKILNVQTYVK--PSAVKGDRSKSVLFDGSILAKEL 757 (831)
Q Consensus 683 ~~~P~MLP~~~~~~~~~~~~t~~e~~~~l~~~~~~~~---~~~~~~L~~~~~~~~--~~~~~g~~~~~vL~~g~~LA~~L 757 (831)
...|...|+ |.|..-.+...++++++-..+..... ...|+.|-....... ....+|+. .+|..||+++
T Consensus 32 L~dP~~~~g--g~Ge~AiR~il~earkva~~~~~~~r~~Il~~c~ei~~lt~qLadLr~~G~G~s-----PeA~~lA~qi 104 (119)
T d1st6a3 32 LRDPNAPPG--DAGEQAIRQILDEAGKAGELCAGKERREILGTCKTLGQMTDQLADLRARGQGAT-----PMAMQKAQQV 104 (119)
T ss_dssp HHSTTSCST--TTTHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHHHTTTTCCCC-----HHHHHHHHHH
T ss_pred HHCcCCCCC--CccHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHH
Confidence 368999998 88888899999999998877654432 224444332221110 01122322 3677888877
Q ss_pred Hh
Q 040228 758 KK 759 (831)
Q Consensus 758 ~~ 759 (831)
.+
T Consensus 105 ~~ 106 (119)
T d1st6a3 105 SQ 106 (119)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 3
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.25 E-value=1.6e+02 Score=21.37 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=14.0
Q ss_pred HHHHHHHhcchh--hHHHHHHHH
Q 040228 752 ILAKELKKLEKR--DRWELMSKV 772 (831)
Q Consensus 752 ~LA~~L~~~~~~--~~WevIa~V 772 (831)
.|.+.|...+.+ +||+.|++.
T Consensus 11 ~le~Al~~~P~gt~~RW~~IA~~ 33 (59)
T d2cqqa1 11 QLTRSMVKFPGGTPGRWEKIAHE 33 (59)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHH
T ss_pred HHHHHHHHCCCCCcHHHHHHHHH
Confidence 444555555444 899999986
No 4
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.00 E-value=1.5e+02 Score=21.88 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 040228 667 DLEFSKLLSDYMMYLLI 683 (831)
Q Consensus 667 ~~~~~~~LSnYmmYLl~ 683 (831)
.+.---...|+||||--
T Consensus 63 lrdelldvanfcmylwg 79 (84)
T d2p06a1 63 LRDELLDVANFCMYLWG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44455567899999853
No 5
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=5.30 E-value=75 Score=19.85 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=9.9
Q ss_pred cchhhhhhhhcccc
Q 040228 619 DESILLWHIATELL 632 (831)
Q Consensus 619 ~esILiWHIATdic 632 (831)
-.+||.|..||+++
T Consensus 17 ~pg~lafrlately 30 (31)
T d1jb0m_ 17 LPAVLAFRLSTELY 30 (31)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 34677888888765
No 6
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.61 E-value=3.4e+02 Score=16.62 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=8.2
Q ss_pred hhHHH-HHHHHHHHH
Q 040228 332 GITYT-LFWGAIALD 345 (831)
Q Consensus 332 ~ITYv-Ll~gai~LE 345 (831)
+++|+ |++||+.+.
T Consensus 4 i~syvglligal~~t 18 (32)
T d1q90l_ 4 ITSYVGLLIGALVFT 18 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 34554 667776653
No 7
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.48 E-value=8.2e+02 Score=20.80 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=23.9
Q ss_pred hCCCccccccccchHHHHHHHHHHHHHHhhcc
Q 040228 684 MQPTMMSAVAGIGKIRFRDTLAEAKRFFKRKV 715 (831)
Q Consensus 684 ~~P~MLP~~~~~~~~~~~~t~~e~~~~l~~~~ 715 (831)
..|...|+ |.|..-.+...++++++-..+.
T Consensus 17 ~~P~~~~~--glGe~Air~iv~earrvA~~~~ 46 (158)
T d1st6a5 17 DNPTVDDR--GVGQAAIRGLVAEGRRLANVMM 46 (158)
T ss_dssp HSCCCCCC--SCSHHHHHHHHHHHHHHHHTSC
T ss_pred HCcCCCCC--cccHHHHHHHHHHHHHHHHhcC
Confidence 58999998 7778888888899888765543
No 8
>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=1e+02 Score=28.79 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.9
Q ss_pred hhcCCC-cccccccchhhhhhHHHHh
Q 040228 100 HLGGPD-TITALALEDNELWLRHSLG 124 (831)
Q Consensus 100 HLGG~D-tITAySlEDN~LW~Rhll~ 124 (831)
|-|||| .+++|+.|+-+.|.+.+-.
T Consensus 57 ~HGG~dkAV~~~~~e~y~~w~~~l~~ 82 (233)
T d1o65a_ 57 VHGGPDRALCHYPREHYLYWAREFPE 82 (233)
T ss_dssp CCCGGGGSEEEEETHHHHHHHHHCGG
T ss_pred CCCCcCCEEEEeCHHHHHHHHHHhcc
Confidence 569998 7999999999999887643
No 9
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.18 E-value=1.1e+03 Score=20.25 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCccCCCCchhHHHHHHHHHhhhhhHHHHHhhHhhcc
Q 040228 25 LSLSLQTFLILFAPSRKGSGNKLLVMLIWSAYLLADWAANYAVGLISDS 73 (831)
Q Consensus 25 ~Sl~lQ~~L~~~~~~Rrr~~~~~lr~~lWlAYl~ad~vA~YaLG~Ls~~ 73 (831)
++..+-+.+...-.+++...++.+|.++-+.+...-.++.+....+...
T Consensus 34 ~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~ 82 (244)
T d2r6gf2 34 LTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQ 82 (244)
T ss_dssp HHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3344444444444667778889999999999999877777666655543
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.80 E-value=6e+02 Score=15.22 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=6.8
Q ss_pred hhHHHHHHHH
Q 040228 332 GITYTLFWGA 341 (831)
Q Consensus 332 ~ITYvLl~ga 341 (831)
.|||++++.-
T Consensus 3 ~i~yv~ifac 12 (30)
T d2axtt1 3 TITYVFIFAC 12 (30)
T ss_dssp HHHHHHHHHH
T ss_pred eeehHHHHHH
Confidence 4788876654
Done!