Query 040233
Match_columns 366
No_of_seqs 138 out of 177
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05055 DUF677: Protein of un 100.0 1.3E-82 2.8E-87 618.8 33.2 327 33-360 1-336 (336)
2 PF05633 DUF793: Protein of un 100.0 1.2E-64 2.7E-69 496.0 30.5 323 19-360 25-389 (389)
3 PF03087 DUF241: Arabidopsis p 98.4 0.00035 7.6E-09 65.7 25.1 41 97-137 31-71 (231)
4 TIGR02894 DNA_bind_RsfA transc 91.9 2.6 5.6E-05 37.4 10.9 100 251-358 48-157 (161)
5 KOG4191 Histone acetyltransfer 81.3 9.2 0.0002 39.2 9.0 88 263-355 379-468 (516)
6 PF04156 IncA: IncA protein; 80.9 41 0.00089 30.1 14.8 22 283-304 93-114 (191)
7 TIGR01834 PHA_synth_III_E poly 72.2 15 0.00033 36.3 7.5 56 287-342 262-319 (320)
8 PRK11637 AmiB activator; Provi 68.9 1.4E+02 0.003 30.4 15.2 16 346-361 161-176 (428)
9 PF09177 Syntaxin-6_N: Syntaxi 65.6 33 0.00071 27.5 7.1 55 290-344 10-64 (97)
10 PRK04654 sec-independent trans 58.1 63 0.0014 30.1 8.2 43 213-262 1-43 (214)
11 KOG1924 RhoA GTPase effector D 57.9 2.2E+02 0.0048 31.8 13.3 63 63-170 702-764 (1102)
12 PF05055 DUF677: Protein of un 57.6 2.1E+02 0.0045 28.6 22.2 23 180-202 146-168 (336)
13 PF10805 DUF2730: Protein of u 57.1 53 0.0011 27.0 7.0 60 283-346 40-99 (106)
14 PF07889 DUF1664: Protein of u 56.4 81 0.0018 27.0 8.2 66 282-349 47-112 (126)
15 TIGR02132 phaR_Bmeg polyhydrox 56.1 1E+02 0.0022 27.9 9.0 83 263-350 52-138 (189)
16 PF04380 BMFP: Membrane fusoge 51.5 41 0.00089 26.2 5.2 43 299-341 35-79 (79)
17 KOG4747 Two-component phosphor 50.9 1.8E+02 0.0038 25.7 9.8 89 96-190 44-132 (150)
18 PF13887 MRF_C1: Myelin gene r 50.8 14 0.0003 24.5 2.0 22 319-340 14-35 (36)
19 PF03511 Fanconi_A: Fanconi an 49.0 17 0.00037 27.2 2.5 24 106-129 28-51 (64)
20 PF05531 NPV_P10: Nucleopolyhe 47.9 1.3E+02 0.0028 23.4 7.5 55 284-348 10-64 (75)
21 PF00804 Syntaxin: Syntaxin; 47.5 1.3E+02 0.0028 23.3 8.5 77 285-361 14-96 (103)
22 COG1579 Zn-ribbon protein, pos 44.6 1.4E+02 0.0031 28.3 8.6 71 286-356 11-82 (239)
23 PRK00708 sec-independent trans 44.1 1.1E+02 0.0023 28.6 7.5 41 213-260 1-41 (209)
24 PLN02372 violaxanthin de-epoxi 41.6 1.5E+02 0.0032 30.5 8.5 31 331-361 408-438 (455)
25 PF02582 DUF155: Uncharacteris 39.4 86 0.0019 27.8 6.1 80 29-113 82-166 (175)
26 PF09577 Spore_YpjB: Sporulati 38.2 2.1E+02 0.0046 27.0 8.7 88 258-350 95-191 (232)
27 PF04568 IATP: Mitochondrial A 38.1 53 0.0011 27.0 4.1 25 278-302 62-86 (100)
28 PF15188 CCDC-167: Coiled-coil 37.4 1.6E+02 0.0035 23.4 6.6 63 282-344 2-68 (85)
29 PF02252 PA28_beta: Proteasome 37.4 2.9E+02 0.0062 24.3 10.0 71 281-365 23-94 (150)
30 PF07889 DUF1664: Protein of u 37.1 1E+02 0.0023 26.3 5.9 58 283-340 66-124 (126)
31 PF08580 KAR9: Yeast cortical 35.0 2.8E+02 0.006 30.5 10.1 25 280-304 52-76 (683)
32 COG1459 PulF Type II secretory 34.7 2.6E+02 0.0055 28.6 9.3 38 130-170 76-113 (397)
33 cd07632 BAR_APPL2 The Bin/Amph 33.0 4E+02 0.0087 24.9 9.4 41 98-138 2-42 (215)
34 KOG2235 Uncharacterized conser 32.2 7E+02 0.015 27.2 15.6 27 96-123 564-590 (776)
35 PRK04098 sec-independent trans 31.9 2E+02 0.0044 25.6 7.0 41 213-260 1-41 (158)
36 PF07730 HisKA_3: Histidine ki 31.4 1.8E+02 0.0038 20.9 5.8 19 292-310 4-22 (68)
37 PF02403 Seryl_tRNA_N: Seryl-t 31.3 2E+02 0.0043 23.2 6.6 32 315-346 70-101 (108)
38 PF15290 Syntaphilin: Golgi-lo 31.0 1.6E+02 0.0035 28.6 6.6 35 317-351 122-156 (305)
39 PF12443 AKNA: AT-hook-contain 30.9 50 0.0011 27.4 2.8 36 320-355 46-81 (106)
40 PF02725 Paramyxo_NS_C: Non-st 30.1 80 0.0017 28.1 4.1 30 57-86 107-136 (165)
41 PF09340 NuA4: Histone acetylt 28.9 82 0.0018 24.6 3.7 26 320-345 3-28 (80)
42 PHA02675 ORF104 fusion protein 28.8 1.8E+02 0.004 23.1 5.4 31 317-347 42-72 (90)
43 PF14712 Snapin_Pallidin: Snap 26.5 3.1E+02 0.0067 21.3 7.8 69 116-196 18-87 (92)
44 COG2960 Uncharacterized protei 26.4 3.7E+02 0.008 22.1 7.9 65 272-342 23-89 (103)
45 PRK01919 tatB sec-independent 25.2 3.4E+02 0.0074 24.4 7.3 23 214-236 2-24 (169)
46 PRK05431 seryl-tRNA synthetase 25.2 3.1E+02 0.0067 28.2 8.1 61 284-347 41-101 (425)
47 PRK11352 regulator protein Frm 24.9 3.6E+02 0.0079 21.5 7.2 28 334-361 53-83 (91)
48 PF09006 Surfac_D-trimer: Lung 24.7 2.2E+02 0.0049 20.0 4.7 26 329-354 2-27 (46)
49 PHA02047 phage lambda Rz1-like 24.6 3.9E+02 0.0085 21.8 6.8 33 332-364 47-79 (101)
50 PF10198 Ada3: Histone acetylt 23.5 4.7E+02 0.01 22.4 7.8 66 285-354 33-99 (131)
51 PF05010 TACC: Transforming ac 23.1 5.3E+02 0.011 23.9 8.4 65 283-347 81-146 (207)
52 smart00503 SynN Syntaxin N-ter 22.7 4E+02 0.0086 21.2 9.8 57 287-343 17-74 (117)
53 PHA01750 hypothetical protein 22.3 2.3E+02 0.005 21.5 4.7 13 316-328 60-72 (75)
54 KOG4331 Polytopic membrane pro 22.2 1.2E+03 0.025 26.4 12.0 149 205-360 149-301 (865)
55 PLN02678 seryl-tRNA synthetase 21.9 4E+02 0.0086 27.7 8.1 34 315-348 74-107 (448)
56 PF10186 Atg14: UV radiation r 21.8 6.7E+02 0.014 23.5 10.2 43 319-361 112-154 (302)
57 KOG0976 Rho/Rac1-interacting s 21.4 3.7E+02 0.008 30.2 7.8 73 281-353 280-371 (1265)
58 PF05816 TelA: Toxic anion res 21.0 6.2E+02 0.013 24.9 9.1 55 256-311 87-142 (333)
59 COG3883 Uncharacterized protei 20.8 3.6E+02 0.0079 26.0 7.0 48 284-344 51-98 (265)
60 PRK13923 putative spore coat p 20.8 6.3E+02 0.014 22.8 9.4 42 316-357 115-156 (170)
61 PF10157 DUF2365: Uncharacteri 20.7 4.4E+02 0.0094 23.2 7.0 58 259-333 90-147 (149)
62 PRK08541 flagellin; Validated 20.6 70 0.0015 29.8 2.1 22 214-235 6-27 (211)
63 KOG2391 Vacuolar sorting prote 20.5 2.8E+02 0.0061 27.8 6.3 27 316-342 243-269 (365)
64 TIGR02132 phaR_Bmeg polyhydrox 20.5 3.8E+02 0.0083 24.4 6.6 49 297-350 55-103 (189)
65 PF10146 zf-C4H2: Zinc finger- 20.5 1.6E+02 0.0035 27.7 4.6 45 284-328 59-104 (230)
66 PF05278 PEARLI-4: Arabidopsis 20.4 5.5E+02 0.012 24.9 8.1 73 281-353 155-234 (269)
67 PRK04778 septation ring format 20.2 8.4E+02 0.018 25.9 10.4 39 317-355 381-419 (569)
No 1
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=100.00 E-value=1.3e-82 Score=618.85 Aligned_cols=327 Identities=60% Similarity=0.894 Sum_probs=315.0
Q ss_pred HhhHHHHHHHHHHHHhhhhccCcCCCccCHhhHHHHHHHHhccCHHHHHHHHhhccccccchhHhHHHHHHHHhhHHHHH
Q 040233 33 LQTFDTSLQARTSHVINTLAAGVEVRALSFDSLKEVTECLLEMNQEVVKVILECKKDIWKSQELFELVEEYFESSLQTLD 112 (366)
Q Consensus 33 L~~F~~~l~~r~~~l~~sL~~~~~~~~lSl~w~~~~~~~lLe~~qe~~~~i~~~~~~~w~~~~l~~Lv~~Yfd~S~kalD 112 (366)
|++||++|++||+++|+||+.|++.+++|++++++++++||||+||++.+|+++++++|++|+|++||.+|||.|.+|||
T Consensus 1 l~~fd~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~ 80 (336)
T PF05055_consen 1 LQSFDSSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASD 80 (336)
T ss_pred CCCccHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHhhccccccC----CcchhHHHHHHHHHhhHhcCCCCChH-HHHHHHHHHHhHHHHHH
Q 040233 113 FCTALEKCLKRARDSQLLILVALQQFEEENDM----GAGHRYVRTLEELKNFKAAGDPFTEE-FFQIFQSVYKQQISMLE 187 (366)
Q Consensus 113 iCnaL~~~I~~~r~~~~~l~~al~~l~~~~~~----~~~~~~~~al~~L~~f~~~~npf~~~-~~~~f~~i~~~~~~ll~ 187 (366)
||++|++||+|+|.+|++|+.+++.|+.++.. .++++|.+|+++|++|+.++|||+.+ ++.+|+.||++|++|++
T Consensus 81 ~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~ 160 (336)
T PF05055_consen 81 FCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLE 160 (336)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876542 24789999999999999999999998 88999999999999999
Q ss_pred HHHHHHHHHhhhhhchhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCchHHHhhhhhhcCCcCCcccchhHHHHHHHHHHh
Q 040233 188 KLQLRKNKLDKKLKYIHSWRKVSSIIFAATFATVLICSVVAAAMAAPPVAAALAAASSIPLGSMGKWIDSLWKNYEHALK 267 (366)
Q Consensus 188 ~L~s~k~kl~~kl~~~r~~k~~~~~~y~~~~~~v~V~~vvvaa~~~~~~~~~l~~~~~~p~~~~~~W~~~~~~l~e~~l~ 267 (366)
+|+++++|+++|++++|+|+++++++|++++++|+|+++++|||++++.+ |+++++++|++..++|.+++|++|+++++
T Consensus 161 kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv-~~aa~~a~P~~~~gkw~~~~~~k~~~al~ 239 (336)
T PF05055_consen 161 KLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVV-ALAAALAAPIGSVGKWCGSLWKKYEEALK 239 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHccchHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988876 58888889999999999999999999999
Q ss_pred hhHhhhhhhcccchHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhh---HHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 040233 268 GQKEMISSMQVGTYIAIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEE---AVKIGVEEIKKKLGVFMKNVEDLGVQAD 343 (366)
Q Consensus 268 ~e~~~~~~~~kGt~~llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e---~v~~~v~eL~k~~~~~~~~Ld~Le~~V~ 343 (366)
++.++.++++|||||+++|||||+++|+||+++|||++++|+|| ++++ .++++|+||+|+++.|+++|||||+|||
T Consensus 240 ~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~ 319 (336)
T PF05055_consen 240 KQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVY 319 (336)
T ss_pred HHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 8664 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040233 344 TCSRDIRRARTVVLQRI 360 (366)
Q Consensus 344 ~~f~~I~raR~~vL~~I 360 (366)
+||++|||||++||++|
T Consensus 320 lC~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 320 LCFKTINRARTLVLQEI 336 (336)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999997
No 2
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=100.00 E-value=1.2e-64 Score=496.00 Aligned_cols=323 Identities=20% Similarity=0.279 Sum_probs=274.9
Q ss_pred CcchhhhhcccchhHhhHHHHHHHHHHHHhhhhccCcCCCccCHhhHHHHHHHHhccCHHHHHHHHhhcc-ccccchhHh
Q 040233 19 ELSSYEAACRLDTDLQTFDTSLQARTSHVINTLAAGVEVRALSFDSLKEVTECLLEMNQEVVKVILECKK-DIWKSQELF 97 (366)
Q Consensus 19 ~~~~y~~a~~~~~~L~~F~~~l~~r~~~l~~sL~~~~~~~~lSl~w~~~~~~~lLe~~qe~~~~i~~~~~-~~w~~~~l~ 97 (366)
+.++.+.+...+++|++||+++++||++|..+..+ .+++|||+||++++++||+||.||+++|++.+. |+ .+|+++
T Consensus 25 ~~~~~~~~~~~~~~L~~Fq~~va~rl~~L~~~~~~--~~~~LSL~W~~~~ld~~l~~~~efr~li~~~~~~~~-s~~~~d 101 (389)
T PF05633_consen 25 SHNHEQEAESLEAELEAFQRHVAERLSDLSPSSKD--SDDFLSLSWMRKALDSFLCCHEEFRALITNLRDLPL-SKPPDD 101 (389)
T ss_pred CCCcccccccchhhHHHHHHHHHHHHHHhccCcCc--ccccccHHHHHHHHHHHHHHHHHHHHHHhccccccc-CCchHH
Confidence 33444556678899999999999999996643211 268999999999999999999999999999987 76 456799
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhccccccCCcchhHHHHHHHHHhhHhcC-------------
Q 040233 98 ELVEEYFESSLQTLDFCTALEKCLKRARDSQLLILVALQQFEEENDMGAGHRYVRTLEELKNFKAAG------------- 164 (366)
Q Consensus 98 ~Lv~~Yfd~S~kalDiCnaL~~~I~~~r~~~~~l~~al~~l~~~~~~~~~~~~~~al~~L~~f~~~~------------- 164 (366)
+||++|||+|+|+||||||++++|+++||||+++++|+|+|+... +.+++|+++|.+.|.++....
T Consensus 102 k~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~-~~~~~~~rRAr~aL~dl~~~~~~~~~~~~~~~~~ 180 (389)
T PF05633_consen 102 KWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSR-PLGEGQLRRARKALSDLKIAMLDDKDSGSSGGSH 180 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 999999999999999999999999999999999999999998862 268899998888888776210
Q ss_pred -C-CCC----------h----HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhchhhh--------hhhhhHHHHHHHHH
Q 040233 165 -D-PFT----------E----EFFQIFQSVYKQQISMLEKLQLRKNKLDKKLKYIHSW--------RKVSSIIFAATFAT 220 (366)
Q Consensus 165 -n-pf~----------~----~~~~~f~~i~~~~~~ll~~L~s~k~kl~~kl~~~r~~--------k~~~~~~y~~~~~~ 220 (366)
| .|. . ...++|++++ |-+.+.||+.+++|+.+.++..+ ++++.++|+|+++|
T Consensus 181 rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls----~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~gL~~A~Y~m~~vt 256 (389)
T PF05633_consen 181 RNRSFGRSNSSGRRSSSSSGSRSAGHFRSLS----WSVSRNWSAARQLQAMGENLVLPKGKESAKGRGLLRAMYGMKSVT 256 (389)
T ss_pred cccccccccCCCCCCCCccccCCcccchhhh----hhhhhhhhhHHHHHHHHhcCCCCCCccccccchHHHHHHHHHHHH
Confidence 0 000 0 0124677754 67889999999999977665333 48899999999999
Q ss_pred HHHHHHHHHHhcCchHHHhhhhhhcCC-cCCcccchhHHHHHHHHHHhhhHhhhhhhcccchHHHhhhhhHHHHHHHHHH
Q 040233 221 VLICSVVAAAMAAPPVAAALAAASSIP-LGSMGKWIDSLWKNYEHALKGQKEMISSMQVGTYIAIKDLDNIRVLIDRLEI 299 (366)
Q Consensus 221 v~V~~vvvaa~~~~~~~~~l~~~~~~p-~~~~~~W~~~~~~l~e~~l~~e~~~~~~~~kGt~~llkeldti~~lV~rL~~ 299 (366)
|||||++|||+||+++ |+.. +++ +|.++.|++++..+|++ |++| ++++..||++++++||+.|+++|++|++
T Consensus 257 vFV~~vlVAA~pc~~r--gL~~--~l~~vP~~~~WA~s~~~LQ~r-I~eE--ikkk~~kgs~gLLkEl~~ve~~vr~L~e 329 (389)
T PF05633_consen 257 VFVCWVLVAAFPCQDR--GLQV--HLSAVPRQFSWAPSFISLQER-INEE--IKKKERKGSCGLLKELQQVEASVRELHE 329 (389)
T ss_pred HHHHHHHHHeeecCCc--cccC--CCCCCccccccchHHHHHHHH-HHHH--HhhccccCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 6543 467 78899999999999988 9998 5567889999999999999999999999
Q ss_pred HHHHhhhcccch-hhh--hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040233 300 EVEALLQNVDFV-IEE--EAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTVVLQRI 360 (366)
Q Consensus 300 ~ie~~~~~v~f~-~~~--e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~vL~~I 360 (366)
.|+ .++|+ +++ +++++.|+||++.|+.|++||||||+||+++||+|+++|+++|+.|
T Consensus 330 l~d----~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l 389 (389)
T PF05633_consen 330 LID----SFQFPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL 389 (389)
T ss_pred HHH----hccCCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence 997 67888 533 5799999999999999999999999999999999999999999864
No 3
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=98.38 E-value=0.00035 Score=65.72 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=38.4
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhh
Q 040233 97 FELVEEYFESSLQTLDFCTALEKCLKRARDSQLLILVALQQ 137 (366)
Q Consensus 97 ~~Lv~~Yfd~S~kalDiCnaL~~~I~~~r~~~~~l~~al~~ 137 (366)
..|+++.+|.|+.++|+|++.++.+-+++....=+|.+|..
T Consensus 31 ~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRR 71 (231)
T PF03087_consen 31 EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRR 71 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45999999999999999999999999999999999999963
No 4
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.93 E-value=2.6 Score=37.41 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=61.6
Q ss_pred cccchhHHHHHHHHHHhhhHhhhhhhcccchHHHhhhhhHHHHHHHH---HHHHHHhhhcccch-hhh------hHHHHH
Q 040233 251 MGKWIDSLWKNYEHALKGQKEMISSMQVGTYIAIKDLDNIRVLIDRL---EIEVEALLQNVDFV-IEE------EAVKIG 320 (366)
Q Consensus 251 ~~~W~~~~~~l~e~~l~~e~~~~~~~~kGt~~llkeldti~~lV~rL---~~~ie~~~~~v~f~-~~~------e~v~~~ 320 (366)
-|.|-.-+.+.|+.+|..-+.+++.-.++. +.-|++..+.=| .....+.. .+. +++ ..++.-
T Consensus 48 GFRWNs~VRkqY~~~i~~AKkqRk~~~~~~-----~~ltl~~vI~fLq~l~~~~~~~~---~~~~e~~~l~~e~~~l~~~ 119 (161)
T TIGR02894 48 GFRWNAYVRKQYEEAIELAKKQRKELKREA-----GSLTLQDVISFLQNLKTTNPSDQ---ALQKENERLKNQNESLQKR 119 (161)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccCc-----ccCCHHHHHHHHHHHHhcchhHH---HHHHHHHHHHHHHHHHHHH
Confidence 379988888889887765444433222211 222333333333 32211111 111 111 247778
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 040233 321 VEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTVVLQ 358 (366)
Q Consensus 321 v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~vL~ 358 (366)
+++|.+..+.+.+.+..+++.-..++..++|+|.+++.
T Consensus 120 ~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~ 157 (161)
T TIGR02894 120 NEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAVV 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888888899999999999999998763
No 5
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=81.27 E-value=9.2 Score=39.20 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHhhhHhhhhhhcccchHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHH-HHHHHHHHHHhhhhhhHHH
Q 040233 263 EHALKGQKEMISSMQVGTYIAIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGV-EEIKKKLGVFMKNVEDLGV 340 (366)
Q Consensus 263 e~~l~~e~~~~~~~~kGt~~llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v-~eL~k~~~~~~~~Ld~Le~ 340 (366)
|.+|++++...-...-+-+..-.|-|.|..-.++|..++. ..-++- ++...+..++ +|++ -..|++-||.|.+
T Consensus 379 E~RLK~eL~~~Gll~ded~pasdddDEvlaeLR~lqaeLk---~vS~~N~k~k~~Ll~la~eE~a--~qe~~q~lddlDk 453 (516)
T KOG4191|consen 379 ESRLKEELIAQGLLEDEDRPASDDDDEVLAELRKLQAELK---AVSAHNRKKKHDLLRLAPEEMA--RQEFQQVLDDLDK 453 (516)
T ss_pred HHHHHHHHHHhccccccCCCcccchHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHhhHHHHH--HHHHHHHHHHHHH
Confidence 3446655422112223445566778999999999999985 223343 2223444333 3333 3568999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 040233 341 QADTCSRDIRRARTV 355 (366)
Q Consensus 341 ~V~~~f~~I~raR~~ 355 (366)
||..||..++|+|.-
T Consensus 454 qI~qaYvKr~r~~kk 468 (516)
T KOG4191|consen 454 QIEQAYVKRNRSRKK 468 (516)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999853
No 6
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.91 E-value=41 Score=30.07 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=14.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHh
Q 040233 283 AIKDLDNIRVLIDRLEIEVEAL 304 (366)
Q Consensus 283 llkeldti~~lV~rL~~~ie~~ 304 (366)
+-+|+++++.....+...++..
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777666666666544
No 7
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=72.19 E-value=15 Score=36.31 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccch-hhh-hHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 040233 287 LDNIRVLIDRLEIEVEALLQNVDFV-IEE-EAVKIGVEEIKKKLGVFMKNVEDLGVQA 342 (366)
Q Consensus 287 ldti~~lV~rL~~~ie~~~~~v~f~-~~~-e~v~~~v~eL~k~~~~~~~~Ld~Le~~V 342 (366)
++..=.+=+.+.+.+|+......+| +.+ +++.+.+.||++.+..++.+|.+|+..+
T Consensus 262 vna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 262 INALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3444445557888888889999999 544 7899999999999999999999998754
No 8
>PRK11637 AmiB activator; Provisional
Probab=68.88 E-value=1.4e+02 Score=30.43 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 040233 346 SRDIRRARTVVLQRII 361 (366)
Q Consensus 346 f~~I~raR~~vL~~I~ 361 (366)
+..|+..|..+++.+.
T Consensus 161 l~~i~~~d~~~l~~l~ 176 (428)
T PRK11637 161 FGYLNQARQETIAELK 176 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 9
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=65.57 E-value=33 Score=27.51 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 040233 290 IRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADT 344 (366)
Q Consensus 290 i~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~ 344 (366)
|...+++|.................+++...-+||+..+..+..+|++|++-|.-
T Consensus 10 v~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 10 VQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433332221122457788888888888888888888888765
No 10
>PRK04654 sec-independent translocase; Provisional
Probab=58.13 E-value=63 Score=30.09 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHhhhhhhcCCcCCcccchhHHHHHH
Q 040233 213 IFAATFATVLICSVVAAAMAAPPVAAALAAASSIPLGSMGKWIDSLWKNY 262 (366)
Q Consensus 213 ~y~~~~~~v~V~~vvvaa~~~~~~~~~l~~~~~~p~~~~~~W~~~~~~l~ 262 (366)
||++++.=++|..|++..+.+|.+. +.+ ....++|...+++..
T Consensus 1 MFgIG~~ELLlI~VVALlV~GPerL---Pe~----aRtlGk~irk~R~~~ 43 (214)
T PRK04654 1 MFDIGVGELTLIAVVALVVLGPERL---PKA----ARFAGLWVRRARMQW 43 (214)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHH---HHH----HHHHHHHHHHHHHHH
Confidence 4666777777777777778888763 211 123466766665443
No 11
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=57.94 E-value=2.2e+02 Score=31.76 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhccCHHHHHHHHhhccccccchhHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhccccc
Q 040233 63 DSLKEVTECLLEMNQEVVKVILECKKDIWKSQELFELVEEYFESSLQTLDFCTALEKCLKRARDSQLLILVALQQFEEEN 142 (366)
Q Consensus 63 ~w~~~~~~~lLe~~qe~~~~i~~~~~~~w~~~~l~~Lv~~Yfd~S~kalDiCnaL~~~I~~~r~~~~~l~~al~~l~~~~ 142 (366)
..+.-++.++--+++|++.+|++...++.. --+|+..+++++.
T Consensus 702 QnLsIflgS~rmpyeeik~~ILevne~vLs-----------------------------------e~~iqnLik~lPe-- 744 (1102)
T KOG1924|consen 702 QNLSIFLGSFRMPYEEIKNVILEVNEDVLS-----------------------------------ESMIQNLIKHLPE-- 744 (1102)
T ss_pred HHHHHHHhhccCCHHHHHHHHhhccHHHHH-----------------------------------HHHHHHHHHhCCC--
Confidence 456667788888889999999887655421 2356666666652
Q ss_pred cCCcchhHHHHHHHHHhhHhcCCCCChH
Q 040233 143 DMGAGHRYVRTLEELKNFKAAGDPFTEE 170 (366)
Q Consensus 143 ~~~~~~~~~~al~~L~~f~~~~npf~~~ 170 (366)
...++.|.++++...+..+.
T Consensus 745 --------~E~l~~L~e~Kaeye~l~e~ 764 (1102)
T KOG1924|consen 745 --------QEQLNKLSELKAEYEDLPEP 764 (1102)
T ss_pred --------HHHHHHHHHHHHhccCCCCH
Confidence 13466777777777777653
No 12
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=57.65 E-value=2.1e+02 Score=28.59 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhc
Q 040233 180 KQQISMLEKLQLRKNKLDKKLKY 202 (366)
Q Consensus 180 ~~~~~ll~~L~s~k~kl~~kl~~ 202 (366)
.++..+-++..+..+|++.+-+.
T Consensus 146 ~~F~~i~~~~~~Ll~kL~~~k~K 168 (336)
T PF05055_consen 146 HQFQSIHDQQSSLLEKLDSRKKK 168 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777788888765543
No 13
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.11 E-value=53 Score=27.00 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=42.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 040233 283 AIKDLDNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCS 346 (366)
Q Consensus 283 llkeldti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f 346 (366)
+-..++..++-+..+...++|+=.. .+-..++..+.+++.....+..++++++.++++.-
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LPt~----~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLPTR----DDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3355566677777777777644111 12246888899999999999999999988887653
No 14
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.45 E-value=81 Score=26.97 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 040233 282 IAIKDLDNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDI 349 (366)
Q Consensus 282 ~llkeldti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I 349 (366)
.+-+-|++++..+..-...+..-.+.++- .-|+..+..+++++.+...++.++.+...|..++++|
T Consensus 47 ~v~kql~~vs~~l~~tKkhLsqRId~vd~--klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLSQRIDRVDD--KLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455666555554444444322222221 2234555555555555555555555555555554444
No 15
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=56.09 E-value=1e+02 Score=27.93 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=53.9
Q ss_pred HHHHhhhHhhhhhhcccchHHHhhhhhHHHHHHHHHHHHHHhhhcccchhh-hhH---HHHHHHHHHHHHHHHhhhhhhH
Q 040233 263 EHALKGQKEMISSMQVGTYIAIKDLDNIRVLIDRLEIEVEALLQNVDFVIE-EEA---VKIGVEEIKKKLGVFMKNVEDL 338 (366)
Q Consensus 263 e~~l~~e~~~~~~~~kGt~~llkeldti~~lV~rL~~~ie~~~~~v~f~~~-~e~---v~~~v~eL~k~~~~~~~~Ld~L 338 (366)
.++++++.+ .-.++....-=.|+.++..+|-.|...||.+-.- | ++ -+. -.+.-..+++.+-++++.|.-|
T Consensus 52 QKafnE~Me--kYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~--f-dd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l 126 (189)
T TIGR02132 52 QKALNDTTG--NYLEQVNVPTKEDIANVASLVINLEEKVDLIEEF--F-DDKFDELEAQQEQAPALKKDVTKLKQDIKSL 126 (189)
T ss_pred HHHHHHHHH--HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHhhCchHHhHHHHHHHHHHHH
Confidence 355665533 2344555667789999999999999999865222 2 22 122 2245556677777777777777
Q ss_pred HHHHHHHHHHHH
Q 040233 339 GVQADTCSRDIR 350 (366)
Q Consensus 339 e~~V~~~f~~I~ 350 (366)
+..|+.+...|.
T Consensus 127 ~~K~D~~L~llE 138 (189)
T TIGR02132 127 DKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHh
Confidence 777777766665
No 16
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=51.47 E-value=41 Score=26.18 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=30.9
Q ss_pred HHHHHhhhcccch-hhh-hHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 040233 299 IEVEALLQNVDFV-IEE-EAVKIGVEEIKKKLGVFMKNVEDLGVQ 341 (366)
Q Consensus 299 ~~ie~~~~~v~f~-~~~-e~v~~~v~eL~k~~~~~~~~Ld~Le~~ 341 (366)
..++......|+. +++ |..+.++...+...+.+...|..||.+
T Consensus 35 ~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 35 ARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444455676 333 568899999999999999999998863
No 17
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]
Probab=50.89 E-value=1.8e+02 Score=25.69 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=55.5
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhccccccCCcchhHHHHHHHHHhhHhcCCCCChHHHHHH
Q 040233 96 LFELVEEYFESSLQTLDFCTALEKCLKRARDSQLLILVALQQFEEENDMGAGHRYVRTLEELKNFKAAGDPFTEEFFQIF 175 (366)
Q Consensus 96 l~~Lv~~Yfd~S~kalDiCnaL~~~I~~~r~~~~~l~~al~~l~~~~~~~~~~~~~~al~~L~~f~~~~npf~~~~~~~f 175 (366)
....+.-||+.|.+++ +-++..++.-+ -+..+.--.|.|...+..-|-.+-++....++.|-..+|-- .|-.-+
T Consensus 44 v~ev~~~fF~~s~~~i---~~~r~ald~~~-d~k~~~~~~hqlkgssssIGa~kvk~~c~~~~~~~~~~n~e--gcvr~l 117 (150)
T KOG4747|consen 44 VEEVVGLFFEDSERLI---NNLRLALDCER-DFKKLGSHVHQLKGSSSSIGALKVKKVCVGFNEFCEAGNIE--GCVRCL 117 (150)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhHh-HHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHhhccch--hHhhch
Confidence 4557889999999997 33455555555 67777778888875543334556667777777777777633 244455
Q ss_pred HHHHHhHHHHHHHHH
Q 040233 176 QSVYKQQISMLEKLQ 190 (366)
Q Consensus 176 ~~i~~~~~~ll~~L~ 190 (366)
+.+...+..+-++|.
T Consensus 118 ~~v~ie~~~lkkkL~ 132 (150)
T KOG4747|consen 118 QQVKIEYSLLKKKLE 132 (150)
T ss_pred HHHHHHHHHHHHHHH
Confidence 554444444444443
No 18
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=50.78 E-value=14 Score=24.54 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhhhhHHH
Q 040233 319 IGVEEIKKKLGVFMKNVEDLGV 340 (366)
Q Consensus 319 ~~v~eL~k~~~~~~~~Ld~Le~ 340 (366)
-+|+||.|....|...+|+||+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 5789999999999999999985
No 19
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=49.00 E-value=17 Score=27.18 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhH
Q 040233 106 SSLQTLDFCTALEKCLKRARDSQL 129 (366)
Q Consensus 106 ~S~kalDiCnaL~~~I~~~r~~~~ 129 (366)
++.|++|+|..+..|+++-+..-+
T Consensus 28 d~~kaldiCaeIL~cLE~R~isWl 51 (64)
T PF03511_consen 28 DSLKALDICAEILGCLEKRKISWL 51 (64)
T ss_pred ccHHHHHHHHHHHHHHHhCCCcHH
Confidence 567999999999999998765443
No 20
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=47.92 E-value=1.3e+02 Score=23.39 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=38.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 040233 284 IKDLDNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRD 348 (366)
Q Consensus 284 lkeldti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~ 348 (366)
..|+..++.-|..|...++...... .-|.+|.++.+....+|+.|+..|...-.+
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~----------~~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNL----------PDVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776544333 237778888899999999999888765443
No 21
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.50 E-value=1.3e+02 Score=23.26 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=49.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH-----HHHHHHHHHHHHHHH
Q 040233 285 KDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQAD-----TCSRDIRRARTVVLQ 358 (366)
Q Consensus 285 keldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~-----~~f~~I~raR~~vL~ 358 (366)
.+|+.|+..|.+|...-...+...+.. +..+++...+.++..........|+.|+..+. .+.....|-|.-.+.
T Consensus 14 ~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq~~ 93 (103)
T PF00804_consen 14 EDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQVQ 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHH
Confidence 556777777777766665554444321 12346788888888888888888888888853 455666666666666
Q ss_pred HHh
Q 040233 359 RII 361 (366)
Q Consensus 359 ~I~ 361 (366)
.++
T Consensus 94 ~L~ 96 (103)
T PF00804_consen 94 ALS 96 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.63 E-value=1.4e+02 Score=28.30 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 040233 286 DLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTVV 356 (366)
Q Consensus 286 eldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~v 356 (366)
.|..++.-..||...+.......+=. ...+.....+.++....+.+..+.-.++.+++.....+.++|..+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554332222222 122346666666666777777777777777777777777777655
No 23
>PRK00708 sec-independent translocase; Provisional
Probab=44.06 E-value=1.1e+02 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHhhhhhhcCCcCCcccchhHHHH
Q 040233 213 IFAATFATVLICSVVAAAMAAPPVAAALAAASSIPLGSMGKWIDSLWK 260 (366)
Q Consensus 213 ~y~~~~~~v~V~~vvvaa~~~~~~~~~l~~~~~~p~~~~~~W~~~~~~ 260 (366)
||++++.=++|+.||+..+.+|.++ +.+ +...++|...+.+
T Consensus 1 MFdIG~~ELlvI~vVaLvV~GPkrL---P~~----~R~lGk~v~k~R~ 41 (209)
T PRK00708 1 MFDIGWSELLVIAIVLIVVVGPKDL---PPM----LRAFGKMTARMRK 41 (209)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHH---HHH----HHHHHHHHHHHHH
Confidence 4666777777777777777777763 221 2234566655543
No 24
>PLN02372 violaxanthin de-epoxidase
Probab=41.64 E-value=1.5e+02 Score=30.52 Aligned_cols=31 Identities=6% Similarity=0.328 Sum_probs=19.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040233 331 FMKNVEDLGVQADTCSRDIRRARTVVLQRII 361 (366)
Q Consensus 331 ~~~~Ld~Le~~V~~~f~~I~raR~~vL~~I~ 361 (366)
|.+|+.+|++..-.+++...+--..+|+++.
T Consensus 408 ~~~~~~~l~~~~~~f~~~lskee~~~l~~~~ 438 (455)
T PLN02372 408 LEEGLKELEQDEENFLKELSKEEKELLEKLK 438 (455)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 6666777777666666666666556666553
No 25
>PF02582 DUF155: Uncharacterised ACR, YagE family COG1723; InterPro: IPR003734 This entry describes proteins of unknown function.
Probab=39.37 E-value=86 Score=27.82 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=48.7
Q ss_pred cchhHhhHHHHHH---HHHHHHhhhhccCcCCCccCHhhHHHHHHHHhccCHHHHHH--HHhhccccccchhHhHHHHHH
Q 040233 29 LDTDLQTFDTSLQ---ARTSHVINTLAAGVEVRALSFDSLKEVTECLLEMNQEVVKV--ILECKKDIWKSQELFELVEEY 103 (366)
Q Consensus 29 ~~~~L~~F~~~l~---~r~~~l~~sL~~~~~~~~lSl~w~~~~~~~lLe~~qe~~~~--i~~~~~~~w~~~~l~~Lv~~Y 103 (366)
.--.|..||..+. +++..+...|+.+.+. .+|=.-+.+.+..++....++.-. |++..+-.|++|+ ++.+
T Consensus 82 qSv~L~~~E~~v~~~l~~~~~i~~~L~~~G~~-~~~~k~l~k~~G~l~~~r~~i~l~~~ilD~Pe~~We~~~----le~l 156 (175)
T PF02582_consen 82 QSVKLDFFEEQVDKLLEETEPIPEELAKTGKL-PLSRKELLKLIGELFSLRHDINLNSDILDTPEFFWENPE----LEPL 156 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcCHHHHHHHHHHHHHHHHHHHHhhhcccCchhccCChh----HHHH
Confidence 4456788998877 5555656666654221 234456777787777777776654 4555444599995 4445
Q ss_pred HHhhHHHHHH
Q 040233 104 FESSLQTLDF 113 (366)
Q Consensus 104 fd~S~kalDi 113 (366)
|+...+-+||
T Consensus 157 y~~l~~~lei 166 (175)
T PF02582_consen 157 YERLRRYLEI 166 (175)
T ss_pred HHHHHHHcCH
Confidence 5554444443
No 26
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=38.19 E-value=2.1e+02 Score=27.03 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhHhhhh-hhcc-cchHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHH---HHHHHHH---HH
Q 040233 258 LWKNYEHALKGQKEMIS-SMQV-GTYIAIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKI---GVEEIKK---KL 328 (366)
Q Consensus 258 ~~~l~e~~l~~e~~~~~-~~~k-Gt~~llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~---~v~eL~k---~~ 328 (366)
+|.-|++.|.+....++ .+.+ +.-..-..+++.-.....+++.+ .++.+ +.-..|.. .+++++. ..
T Consensus 95 LW~~~e~~i~~~~~~mk~a~~~~~~~~f~~~~n~f~~~y~~I~Psl-----~I~~~~~~v~~v~s~i~yl~~~~~~~~~~ 169 (232)
T PF09577_consen 95 LWLQYEKPIMEDFQRMKQAAQKGDKEAFRASLNEFLSHYELIRPSL-----TIDRPPEQVQRVDSHISYLERLRFQQLDQ 169 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh-----hccCCHHHHHHHHHHHHHHHHhhhcccCh
Confidence 34444444444433222 2223 33445555666665555555555 45555 33332322 2333322 34
Q ss_pred HHHhhhhhhHHHHHHHHHHHHH
Q 040233 329 GVFMKNVEDLGVQADTCSRDIR 350 (366)
Q Consensus 329 ~~~~~~Ld~Le~~V~~~f~~I~ 350 (366)
....+.|+.+|..+...|..+-
T Consensus 170 ~~~~~~l~~le~~l~~lF~~~k 191 (232)
T PF09577_consen 170 KEVQEALEQLEEDLQKLFDGVK 191 (232)
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 6667889999999999987643
No 27
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.10 E-value=53 Score=26.97 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=16.5
Q ss_pred ccchHHHhhhhhHHHHHHHHHHHHH
Q 040233 278 VGTYIAIKDLDNIRVLIDRLEIEVE 302 (366)
Q Consensus 278 kGt~~llkeldti~~lV~rL~~~ie 302 (366)
-.-|+--+|-+.+..|=+.|..+++
T Consensus 62 E~~Y~r~~EkEqL~~Lk~kl~~e~~ 86 (100)
T PF04568_consen 62 EEQYFRKKEKEQLKKLKEKLKEEIE 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447777777777777666666664
No 28
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=37.44 E-value=1.6e+02 Score=23.44 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH---hhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 040233 282 IAIKDLDNIRVLIDRLEIEVEA---LLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADT 344 (366)
Q Consensus 282 ~llkeldti~~lV~rL~~~ie~---~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~ 344 (366)
++-+|+|.++.-+...+..+|. -+.....+ +..+.+..-..+|++..+...++|.-|-+|=+.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 3557777777777777666552 23333443 333456666777777777777777777665443
No 29
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=37.39 E-value=2.9e+02 Score=24.28 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=36.2
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 040233 281 YIAIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTVVLQR 359 (366)
Q Consensus 281 ~~llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~vL~~ 359 (366)
..++..+.+|...|.-+-+.|| ++-+|+ .=.+++-+.+.++...+..|.+ ++..+| .+|.-+..+
T Consensus 23 ~~l~e~~~~vk~WI~l~IPkiE---DGNNFGV~VQeevl~~l~~v~~~a~~~~~-------~i~~Y~----~~Ra~~v~k 88 (150)
T PF02252_consen 23 RELIEKCNTVKMWIQLLIPKIE---DGNNFGVSVQEEVLEELRAVESKAENFLD-------QISKYF----SARAKAVSK 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHT--------SS--HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccc---cCCcccHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHH
Confidence 4578889999999999999987 666775 3223333333333333333322 223333 467777777
Q ss_pred HhcccC
Q 040233 360 IIKHTN 365 (366)
Q Consensus 360 I~~~~~ 365 (366)
+.++|+
T Consensus 89 ~~K~p~ 94 (150)
T PF02252_consen 89 AAKYPH 94 (150)
T ss_dssp HHH-TT
T ss_pred HHhCCC
Confidence 777765
No 30
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=37.09 E-value=1e+02 Score=26.29 Aligned_cols=58 Identities=9% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q 040233 283 AIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGV 340 (366)
Q Consensus 283 llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~ 340 (366)
|..-||.++.-++...+..+.+++-|.-. ++-+.++.-++.+...+..|...|+++|+
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666655444443111 12234556666666666666666666654
No 31
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=34.99 E-value=2.8e+02 Score=30.49 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.4
Q ss_pred chHHHhhhhhHHHHHHHHHHHHHHh
Q 040233 280 TYIAIKDLDNIRVLIDRLEIEVEAL 304 (366)
Q Consensus 280 t~~llkeldti~~lV~rL~~~ie~~ 304 (366)
-++|.++|+.||..+.+|.+.||.-
T Consensus 52 l~~L~~~l~~ID~ai~~~l~lIe~~ 76 (683)
T PF08580_consen 52 LYGLREGLEEIDSAISRFLDLIEVY 76 (683)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 3778999999999999999999974
No 32
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.68 E-value=2.6e+02 Score=28.59 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=23.5
Q ss_pred HHHHHHhhccccccCCcchhHHHHHHHHHhhHhcCCCCChH
Q 040233 130 LILVALQQFEEENDMGAGHRYVRTLEELKNFKAAGDPFTEE 170 (366)
Q Consensus 130 ~l~~al~~l~~~~~~~~~~~~~~al~~L~~f~~~~npf~~~ 170 (366)
++..++..+... ....+.+..+++...-...|+||+..
T Consensus 76 pL~~aL~~l~~q---~~~~~~~~~l~~i~~~l~~G~sls~a 113 (397)
T COG1459 76 PLYEALEILADQ---APNPKLKQVLTSILEELESGKSLSEA 113 (397)
T ss_pred cHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHCCCcHHHH
Confidence 445555555332 12345667777777777888888765
No 33
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=33.00 E-value=4e+02 Score=24.91 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=35.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhc
Q 040233 98 ELVEEYFESSLQTLDFCTALEKCLKRARDSQLLILVALQQF 138 (366)
Q Consensus 98 ~Lv~~Yfd~S~kalDiCnaL~~~I~~~r~~~~~l~~al~~l 138 (366)
.|+..|=+++....|.||.|.++..|+=..|--+-.|-+.+
T Consensus 2 ~l~~v~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~ 42 (215)
T cd07632 2 SLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQL 42 (215)
T ss_pred cHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 48899999999999999999999999988887777666655
No 34
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.16 E-value=7e+02 Score=27.22 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=19.6
Q ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040233 96 LFELVEEYFESSLQTLDFCTALEKCLKR 123 (366)
Q Consensus 96 l~~Lv~~Yfd~S~kalDiCnaL~~~I~~ 123 (366)
...-+--|+=.|+-+ ||||++...+..
T Consensus 564 tq~~L~k~LLktv~n-eI~n~l~nyvas 590 (776)
T KOG2235|consen 564 TQSDLRKYLLKTVGN-EIANALLNYVAS 590 (776)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334455677777766 999999988865
No 35
>PRK04098 sec-independent translocase; Provisional
Probab=31.88 E-value=2e+02 Score=25.55 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHhhhhhhcCCcCCcccchhHHHH
Q 040233 213 IFAATFATVLICSVVAAAMAAPPVAAALAAASSIPLGSMGKWIDSLWK 260 (366)
Q Consensus 213 ~y~~~~~~v~V~~vvvaa~~~~~~~~~l~~~~~~p~~~~~~W~~~~~~ 260 (366)
||++++.=++|..|++..+.+|.+. |.+ +...++|...+.+
T Consensus 1 MfgiG~~EllvI~vVaLlvfGP~KL---P~~----~r~lGk~ir~~K~ 41 (158)
T PRK04098 1 MFGMGFFEILVILVVAIIFLGPDKL---PQA----MVDIAKFFKAVKK 41 (158)
T ss_pred CCCCcHHHHHHHHHHHHhhcCchHH---HHH----HHHHHHHHHHHHH
Confidence 3566666777777777777788764 221 1234566665544
No 36
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=31.38 E-value=1.8e+02 Score=20.91 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhhcccc
Q 040233 292 VLIDRLEIEVEALLQNVDF 310 (366)
Q Consensus 292 ~lV~rL~~~ie~~~~~v~f 310 (366)
++.+.|||.+-+...++.+
T Consensus 4 rIAreLHD~v~q~L~~i~~ 22 (68)
T PF07730_consen 4 RIARELHDGVGQSLTAIKM 22 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 5667788888766555433
No 37
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.31 E-value=2e+02 Score=23.15 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 040233 315 EAVKIGVEEIKKKLGVFMKNVEDLGVQADTCS 346 (366)
Q Consensus 315 e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f 346 (366)
+++..-++++++....+.+.+++++++++...
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777778877777776654
No 38
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=30.98 E-value=1.6e+02 Score=28.63 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 040233 317 VKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRR 351 (366)
Q Consensus 317 v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~r 351 (366)
-+.-+++|++..+.++..|-+=.+.|-.+|..||-
T Consensus 122 ARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINi 156 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINI 156 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhh
Confidence 44568889999999999999999999999999984
No 39
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=30.89 E-value=50 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 040233 320 GVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTV 355 (366)
Q Consensus 320 ~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~ 355 (366)
-..|++..|-.+++++|+|-.||.++.+.|...+.-
T Consensus 46 ~~~ege~~~qkL~eqteeLK~kvqe~sk~i~~~~~~ 81 (106)
T PF12443_consen 46 KIREGEQMIQKLGEQTEELKDKVQEFSKRIEQDSPD 81 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCcc
Confidence 356677777788889999999999988888765543
No 40
>PF02725 Paramyxo_NS_C: Non-structural protein C; InterPro: IPR003875 This family consists of the polymerase accessory protein C from members of the paramyxoviridae.
Probab=30.06 E-value=80 Score=28.13 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=25.7
Q ss_pred CCccCHhhHHHHHHHHhccCHHHHHHHHhh
Q 040233 57 VRALSFDSLKEVTECLLEMNQEVVKVILEC 86 (366)
Q Consensus 57 ~~~lSl~w~~~~~~~lLe~~qe~~~~i~~~ 86 (366)
...|+++|+++++..++..++|..++-..-
T Consensus 107 skmLT~sWf~Qal~~i~~S~eE~~~L~~Am 136 (165)
T PF02725_consen 107 SKMLTLSWFNQALMVICQSQEEKENLHTAM 136 (165)
T ss_pred cccchHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 367999999999999999999988876553
No 41
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=28.86 E-value=82 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHH
Q 040233 320 GVEEIKKKLGVFMKNVEDLGVQADTC 345 (366)
Q Consensus 320 ~v~eL~k~~~~~~~~Ld~Le~~V~~~ 345 (366)
-++++-+.-..+.+.|..||+|||..
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~ 28 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDK 28 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888899999999999874
No 42
>PHA02675 ORF104 fusion protein; Provisional
Probab=28.78 E-value=1.8e+02 Score=23.07 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 040233 317 VKIGVEEIKKKLGVFMKNVEDLGVQADTCSR 347 (366)
Q Consensus 317 v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~ 347 (366)
+.+.-+.+-++|....+.|+.||+|+.-+-+
T Consensus 42 L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk 72 (90)
T PHA02675 42 LLDSYKTITDCCRETGARLDRLERHLETLRE 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778899999999999999875443
No 43
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.51 E-value=3.1e+02 Score=21.31 Aligned_cols=69 Identities=25% Similarity=0.416 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHhHHHHHHHhhccccccCCcchhHHHHHHHHHhhHhcCCCCCh-HHHHHHHHHHHhHHHHHHHHHHHHH
Q 040233 116 ALEKCLKRARDSQLLILVALQQFEEENDMGAGHRYVRTLEELKNFKAAGDPFTE-EFFQIFQSVYKQQISMLEKLQLRKN 194 (366)
Q Consensus 116 aL~~~I~~~r~~~~~l~~al~~l~~~~~~~~~~~~~~al~~L~~f~~~~npf~~-~~~~~f~~i~~~~~~ll~~L~s~k~ 194 (366)
.+...|..+++.|..+...+..+.. -|.++.+......||+. +.......+..+-..+-+++...++
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~~------------~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLNE------------KLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888877765432 23444443334446643 2234455555555555555555555
Q ss_pred HH
Q 040233 195 KL 196 (366)
Q Consensus 195 kl 196 (366)
++
T Consensus 86 R~ 87 (92)
T PF14712_consen 86 RA 87 (92)
T ss_pred HH
Confidence 44
No 44
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.37 E-value=3.7e+02 Score=22.15 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=44.9
Q ss_pred hhhhhcccchHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhh-hHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 040233 272 MISSMQVGTYIAIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEE-EAVKIGVEEIKKKLGVFMKNVEDLGVQA 342 (366)
Q Consensus 272 ~~~~~~kGt~~llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~-e~v~~~v~eL~k~~~~~~~~Ld~Le~~V 342 (366)
+...+.+|.+..-+|+++ .++..++......|.. +++ |..+++.-.=+...+.+...+++||...
T Consensus 23 l~e~~a~~~~~~~~evE~------~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl 89 (103)
T COG2960 23 LSEDAAGAAQEVRAEVEK------AFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARL 89 (103)
T ss_pred HHHHccccchhhHHHHHH------HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445688889999888875 3444555555555665 333 4566777778888888888888888654
No 45
>PRK01919 tatB sec-independent translocase; Provisional
Probab=25.24 E-value=3.4e+02 Score=24.43 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCchH
Q 040233 214 FAATFATVLICSVVAAAMAAPPV 236 (366)
Q Consensus 214 y~~~~~~v~V~~vvvaa~~~~~~ 236 (366)
|++++.=++|..|++..+.+|.+
T Consensus 2 FdIG~~ElliI~VVALiV~GPek 24 (169)
T PRK01919 2 IDLGLSKLALIGVVALVVIGPER 24 (169)
T ss_pred CCCcHHHHHHHHHHHHheeCchH
Confidence 45555566666677677777776
No 46
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.17 E-value=3.1e+02 Score=28.16 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=32.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 040233 284 IKDLDNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSR 347 (366)
Q Consensus 284 lkeldti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~ 347 (366)
..+++++.+--+.+...|...+..- ++.+++++-+++|++....+.+.++++++.++....
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~---~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKG---EDAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554445554553211110 122346666677777777777777777777666443
No 47
>PRK11352 regulator protein FrmR; Provisional
Probab=24.86 E-value=3.6e+02 Score=21.54 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHH---HHHHHHHHHh
Q 040233 334 NVEDLGVQADTCSRDIRR---ARTVVLQRII 361 (366)
Q Consensus 334 ~Ld~Le~~V~~~f~~I~r---aR~~vL~~I~ 361 (366)
+..-|+.|+..|+..-.. -|...++++.
T Consensus 53 ~~~ile~hl~~cv~~~~~~~~~~~~~i~el~ 83 (91)
T PRK11352 53 MAEVLESHIRETFDRNDCYSREVSQSVDDTI 83 (91)
T ss_pred HHHHHHHHHHHHHhhhccCccchHHHHHHHH
Confidence 445688888888887742 2556666654
No 48
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.67 E-value=2.2e+02 Score=20.01 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHH
Q 040233 329 GVFMKNVEDLGVQADTCSRDIRRART 354 (366)
Q Consensus 329 ~~~~~~Ld~Le~~V~~~f~~I~raR~ 354 (366)
..++++++.|+.||...=...-+-+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888887765555444443
No 49
>PHA02047 phage lambda Rz1-like protein
Probab=24.58 E-value=3.9e+02 Score=21.85 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=17.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040233 332 MKNVEDLGVQADTCSRDIRRARTVVLQRIIKHT 364 (366)
Q Consensus 332 ~~~Ld~Le~~V~~~f~~I~raR~~vL~~I~~~~ 364 (366)
+.++.-+.+||..+-..-+..|.+|...+..++
T Consensus 47 ~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~ 79 (101)
T PHA02047 47 EVRYATLQRHVQAVEARTNTQRQEVDRALDQNR 79 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333344444444444446666667766665443
No 50
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=23.53 E-value=4.7e+02 Score=22.36 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 040233 285 KDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRART 354 (366)
Q Consensus 285 keldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~ 354 (366)
.|=|-|..-.++|..++. .-+..- .+...+...++|-....+ +..-++.+..+|..+|....++|.
T Consensus 33 ~eDDEI~aeLR~lQ~eLr---~~~~~N~~rk~rL~~~~~e~ma~QE-~~~~l~~lD~~V~~aY~Kr~~~~~ 99 (131)
T PF10198_consen 33 REDDEISAELRRLQAELR---EQSAHNNARKKRLLKIAKEEMARQE-YKRILDDLDKQVEQAYKKRMRARK 99 (131)
T ss_pred ccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666777776663 112221 122335555555444444 455699999999999999998874
No 51
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.12 E-value=5.3e+02 Score=23.91 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=49.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 040233 283 AIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSR 347 (366)
Q Consensus 283 llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~ 347 (366)
+..||++++....-|+..-+.++..+.-. .+++.++..+.+.........+..+-|-.|+.+=..
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~ 146 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE 146 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999988888888777666 677777877777777777777777777666654433
No 52
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=22.68 E-value=4e+02 Score=21.21 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 040233 287 LDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQAD 343 (366)
Q Consensus 287 ldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~ 343 (366)
|..|...|..|...........+-. .-.+.+...+.+...........|..|+++..
T Consensus 17 I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 17 IQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444444444444444333333211 11234556666666666666667777766654
No 53
>PHA01750 hypothetical protein
Probab=22.29 E-value=2.3e+02 Score=21.50 Aligned_cols=13 Identities=54% Similarity=0.672 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 040233 316 AVKIGVEEIKKKL 328 (366)
Q Consensus 316 ~v~~~v~eL~k~~ 328 (366)
.+.+.|+|++++.
T Consensus 60 nl~~qv~eik~k~ 72 (75)
T PHA01750 60 ELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHhh
Confidence 3555555555544
No 54
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=22.19 E-value=1.2e+03 Score=26.43 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcCchHHHhhhhhhcCCcCCcccchhHHHHHHHHHHhhhHhhh-hhhcccchHH
Q 040233 205 SWRKVSSIIFAATFATVLICSVVAAAMAAPPVAAALAAASSIPLGSMGKWIDSLWKNYEHALKGQKEMI-SSMQVGTYIA 283 (366)
Q Consensus 205 ~~k~~~~~~y~~~~~~v~V~~vvvaa~~~~~~~~~l~~~~~~p~~~~~~W~~~~~~l~e~~l~~e~~~~-~~~~kGt~~l 283 (366)
++|+.+..++.-..+...+++|+.+-++-++.-.++. =..-.+-.-+..++..- +.+.++ +. =-++.=+-.-
T Consensus 149 a~kR~~~~l~Llvl~i~~ligv~~~fvtnk~v~~~i~----~s~~~m~~~~~dl~t~l-rdv~~~--l~~lli~dy~~~e 221 (865)
T KOG4331|consen 149 ACKRPCCELELLVLAIELLIGVFRAFVTNKPVMLRIK----NSLEDMRRLATDLRTYL-RDVPRD--LMVLLIADYTHSE 221 (865)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh----ccHHHHHHHHHHHHHHH-hccHHH--HHHHHHHHhccch
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhcccch--hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 040233 284 IKDLDNIRVLIDRLEIEVEALLQNVDFV--IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIR-RARTVVLQRI 360 (366)
Q Consensus 284 lkeldti~~lV~rL~~~ie~~~~~v~f~--~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~-raR~~vL~~I 360 (366)
-+++++....-..+...|.........+ ++-..+...++|..+..+++.+.|+++..+-+.-+..|. +.+..+..-+
T Consensus 222 ~qv~~qLn~i~~~i~~~l~~~s~s~vi~~l~~v~~~~~el~~~~~ave~m~~~L~~~~s~~~~~~~~lr~~~~~sL~~ll 301 (865)
T KOG4331|consen 222 CQVFYQLNEIGMLIGGCLHDDSESNVIPVLDYVLSAAQELREMSEAVENMNDTLDSLGSQLNDGASKLRERVNASLKVLL 301 (865)
T ss_pred hHHHHHhhcccchhcchhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHH
No 55
>PLN02678 seryl-tRNA synthetase
Probab=21.94 E-value=4e+02 Score=27.72 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 040233 315 EAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRD 348 (366)
Q Consensus 315 e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~ 348 (366)
+++.+.+++|++....+.+.+++++++++..+..
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777777787777777765443
No 56
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.75 E-value=6.7e+02 Score=23.46 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040233 319 IGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTVVLQRII 361 (366)
Q Consensus 319 ~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~vL~~I~ 361 (366)
..++...+......+.+++.++.+...-..+.+.|..+++++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~ 154 (302)
T PF10186_consen 112 DLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELS 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777777777777888888888888764
No 57
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=21.36 E-value=3.7e+02 Score=30.24 Aligned_cols=73 Identities=19% Similarity=0.270 Sum_probs=55.5
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hh-h-----------------hHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 040233 281 YIAIKDLDNIRVLIDRLEIEVEALLQNVDFV-IE-E-----------------EAVKIGVEEIKKKLGVFMKNVEDLGVQ 341 (366)
Q Consensus 281 ~~llkeldti~~lV~rL~~~ie~~~~~v~f~-~~-~-----------------e~v~~~v~eL~k~~~~~~~~Ld~Le~~ 341 (366)
-+|-+|+-.-+-+|+.+..+++-.+.+.--+ .+ + -+++..+.|-+.+.+.|.+.+.+||++
T Consensus 280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKk 359 (1265)
T KOG0976|consen 280 SVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKK 359 (1265)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 4677888889999999988888766654332 11 0 037778888899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 040233 342 ADTCSRDIRRAR 353 (366)
Q Consensus 342 V~~~f~~I~raR 353 (366)
=+.....+.+-+
T Consensus 360 rd~al~dvr~i~ 371 (1265)
T KOG0976|consen 360 RDMALMDVRSIQ 371 (1265)
T ss_pred HHHHHHhHHHHH
Confidence 888777765544
No 58
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=21.01 E-value=6.2e+02 Score=24.92 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhhhHhhh-hhhcccchHHHhhhhhHHHHHHHHHHHHHHhhhcccch
Q 040233 256 DSLWKNYEHALKGQKEMI-SSMQVGTYIAIKDLDNIRVLIDRLEIEVEALLQNVDFV 311 (366)
Q Consensus 256 ~~~~~l~e~~l~~e~~~~-~~~~kGt~~llkeldti~~lV~rL~~~ie~~~~~v~f~ 311 (366)
..+..+|++ ++++.+.+ ....+|.-.+.+|...++.+-+.+.+.+......+.++
T Consensus 87 ~~~~~ky~s-v~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag 142 (333)
T PF05816_consen 87 ERYFAKYQS-VQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAG 142 (333)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667866 77775533 23447888899999999999999998888776666555
No 59
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.82 E-value=3.6e+02 Score=26.02 Aligned_cols=48 Identities=8% Similarity=0.296 Sum_probs=28.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 040233 284 IKDLDNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADT 344 (366)
Q Consensus 284 lkeldti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~ 344 (366)
=+|++.+..-|..++..++ +.+.-+.+++.....+.+.++++++.|.+
T Consensus 51 q~ei~~L~~qi~~~~~k~~-------------~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 51 QNEIESLDNQIEEIQSKID-------------ELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555543 35555666666666666666666666654
No 60
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.76 E-value=6.3e+02 Score=22.77 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 040233 316 AVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTVVL 357 (366)
Q Consensus 316 ~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~vL 357 (366)
.+++..++|......+.+...-.++.-..+...++|+|..++
T Consensus 115 kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~~~ 156 (170)
T PRK13923 115 KLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRMAI 156 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 477788888888888899999999999999999999998874
No 61
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=20.72 E-value=4.4e+02 Score=23.17 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHhhhhhhcccchHHHhhhhhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhh
Q 040233 259 WKNYEHALKGQKEMISSMQVGTYIAIKDLDNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMK 333 (366)
Q Consensus 259 ~~l~e~~l~~e~~~~~~~~kGt~~llkeldti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~ 333 (366)
...|...+..-.+-.+..-||+|.++.=.+.+++..+-++... ..|++|++..+.|..
T Consensus 90 ~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La-----------------~qIK~Ik~~lD~lE~ 147 (149)
T PF10157_consen 90 METYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLA-----------------QQIKDIKKLLDLLES 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHh
No 62
>PRK08541 flagellin; Validated
Probab=20.58 E-value=70 Score=29.80 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCch
Q 040233 214 FAATFATVLICSVVAAAMAAPP 235 (366)
Q Consensus 214 y~~~~~~v~V~~vvvaa~~~~~ 235 (366)
-|.....|||+-|+|||+++.-
T Consensus 6 ~GIGTLIVFIAmVLVAAVAA~V 27 (211)
T PRK08541 6 VGIGTLIVFIAMVLVAAVAAAV 27 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999987654
No 63
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.52 E-value=2.8e+02 Score=27.77 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 040233 316 AVKIGVEEIKKKLGVFMKNVEDLGVQA 342 (366)
Q Consensus 316 ~v~~~v~eL~k~~~~~~~~Ld~Le~~V 342 (366)
++++..++|+...+.+++++-.|.+++
T Consensus 243 eL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 243 ELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444444443333
No 64
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=20.51 E-value=3.8e+02 Score=24.37 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 040233 297 LEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIR 350 (366)
Q Consensus 297 L~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~ 350 (366)
+.+..+..++.+.+| .+.-|..+.+-+-++++.+|.+|++.+..|+..-
T Consensus 55 fnE~MekYLe~lNlP-----Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 55 LNDTTGNYLEQVNVP-----TKEDIANVASLVINLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455557778887 2223444444555556666666666666666554
No 65
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.51 E-value=1.6e+02 Score=27.75 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=22.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHH
Q 040233 284 IKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKL 328 (366)
Q Consensus 284 lkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~ 328 (366)
..|+++|+..++....+-+...+.+.-- ++...++..|+++++.+
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665555443333221 11123555555555543
No 66
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=20.37 E-value=5.5e+02 Score=24.86 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=42.7
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hh------hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 040233 281 YIAIKDLDNIRVLIDRLEIEVEALLQNVDFV-IE------EEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRAR 353 (366)
Q Consensus 281 ~~llkeldti~~lV~rL~~~ie~~~~~v~f~-~~------~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR 353 (366)
...++||+.+.-=|..|+..++.....++.- .. .+....-++..+...+...+-|+..|+.+.++-.+|.-.|
T Consensus 155 ~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~ 234 (269)
T PF05278_consen 155 IATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMK 234 (269)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888887777666554432 10 1112223444445555556666666666666666665433
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.15 E-value=8.4e+02 Score=25.94 Aligned_cols=39 Identities=28% Similarity=0.250 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 040233 317 VKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTV 355 (366)
Q Consensus 317 v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~ 355 (366)
+++..+++.+..+.+.+.-+++.+.+..+-.....+|.-
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k 419 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK 419 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666666666666666654
Done!