Query 040233
Match_columns 366
No_of_seqs 138 out of 177
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dnd_A Syntaxin-10, SYN10; str 66.0 18 0.00062 29.8 7.2 55 291-345 37-93 (130)
2 1ez3_A Syntaxin-1A; three heli 55.0 56 0.0019 25.8 8.3 60 285-344 19-79 (127)
3 2yy0_A C-MYC-binding protein; 50.7 25 0.00085 24.4 4.6 31 312-342 19-49 (53)
4 2akf_A Coronin-1A; coiled coil 46.5 35 0.0012 20.7 4.1 23 320-342 7-29 (32)
5 3swy_A Cyclic nucleotide-gated 46.4 63 0.0022 21.7 5.9 45 289-342 2-46 (46)
6 3swf_A CGMP-gated cation chann 42.3 97 0.0033 23.0 6.9 49 288-345 3-51 (74)
7 4igg_A Catenin alpha-1; asymme 37.5 4.1E+02 0.014 28.4 14.0 57 60-118 301-357 (832)
8 1avo_B 11S regulator; proteaso 35.6 1.5E+02 0.005 24.6 7.9 69 283-365 22-91 (140)
9 3mq9_A Bone marrow stromal ant 34.6 1.2E+02 0.0043 29.3 8.7 37 316-352 394-430 (471)
10 1kd8_B GABH BLL, GCN4 acid bas 28.8 1.1E+02 0.0039 19.3 4.6 28 320-347 2-29 (36)
11 3t98_B Nucleoporin NUP58/NUP45 28.2 62 0.0021 25.0 4.1 31 317-347 10-40 (93)
12 1p68_A De novo designed protei 26.1 2E+02 0.0069 21.3 8.2 54 296-349 36-96 (102)
13 1wrd_A TOM1, target of MYB pro 25.1 1.8E+02 0.0063 22.5 6.4 49 283-335 11-59 (103)
14 3na7_A HP0958; flagellar bioge 24.9 3.3E+02 0.011 24.2 9.2 19 284-302 31-49 (256)
15 2lw1_A ABC transporter ATP-bin 24.7 2.2E+02 0.0075 21.2 7.4 33 275-307 12-44 (89)
16 3c3f_A Alpha/beta peptide with 23.2 92 0.0031 19.5 3.3 26 320-345 2-27 (34)
17 1s94_A S-syntaxin; three helix 23.0 2.7E+02 0.0093 23.3 7.8 59 285-343 50-109 (180)
No 1
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=66.00 E-value=18 Score=29.76 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhhcccch-h-hhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 040233 291 RVLIDRLEIEVEALLQNVDFV-I-EEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTC 345 (366)
Q Consensus 291 ~~lV~rL~~~ie~~~~~v~f~-~-~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~ 345 (366)
...++++...........+.+ . ..+++...-+||+..+..++.+|++|++-|.-+
T Consensus 37 q~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~iv 93 (130)
T 4dnd_A 37 QKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIV 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333322 1 234678888889999999999999999888754
No 2
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=55.04 E-value=56 Score=25.83 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=43.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 040233 285 KDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADT 344 (366)
Q Consensus 285 keldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~ 344 (366)
.+|+.|+..|.+|...=+..+...+.. .-.+.+...+.++.+........|+.|+++...
T Consensus 19 ~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 19 GFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777766655555554432 223468888889999999999999999888764
No 3
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.66 E-value=25 Score=24.37 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 040233 312 IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQA 342 (366)
Q Consensus 312 ~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V 342 (366)
.+.|.++.-..+|+..++.+.+.+++|...+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557799999999999999999999988765
No 4
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=46.55 E-value=35 Score=20.73 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHH
Q 040233 320 GVEEIKKKLGVFMKNVEDLGVQA 342 (366)
Q Consensus 320 ~v~eL~k~~~~~~~~Ld~Le~~V 342 (366)
.++.|...+..+.+.+|.||+.|
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555566666654
No 5
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=46.35 E-value=63 Score=21.74 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 040233 289 NIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQA 342 (366)
Q Consensus 289 ti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V 342 (366)
.++.-|.+|+..+|.++. .+...+.|......++++.+..||.+|
T Consensus 2 dlEekv~~Le~~ld~LqT---------r~ArLlae~~ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQT---------RFARLLAEYNATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356667788877775532 245667788888888899999888875
No 6
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.30 E-value=97 Score=22.95 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 040233 288 DNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTC 345 (366)
Q Consensus 288 dti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~ 345 (366)
+.++--|.+|+..+|.++. .+...+.|......++++.+..||.++..+
T Consensus 3 ~dlEEKv~~LE~sld~LQT---------rfARLLaEy~ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQT---------RFARILAEYESMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3467778888888875532 245667788888888888888888888763
No 7
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=37.54 E-value=4.1e+02 Score=28.41 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=42.2
Q ss_pred cCHhhHHHHHHHHhccCHHHHHHHHhhccccccchhHhHHHHHHHHhhHHHHHHHHHHH
Q 040233 60 LSFDSLKEVTECLLEMNQEVVKVILECKKDIWKSQELFELVEEYFESSLQTLDFCTALE 118 (366)
Q Consensus 60 lSl~w~~~~~~~lLe~~qe~~~~i~~~~~~~w~~~~l~~Lv~~Yfd~S~kalDiCnaL~ 118 (366)
|.-.-+.++.|.|++++.....++-.-.. .+...+......|=+++.++.++|+.+.
T Consensus 301 L~~AvvdqvsD~F~dt~~pL~~Li~Aa~~--g~ee~~~e~a~~F~eha~~lvevA~Lv~ 357 (832)
T 4igg_A 301 LRKAVMDHVSDSFLETNVPLLVLIEAAKN--GNEKEVKEYAQVFREHANKLIEVANLAC 357 (832)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778889999998877665543321 3456777888888999999999999773
No 8
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=35.63 E-value=1.5e+02 Score=24.58 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=37.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 040233 283 AIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRARTVVLQRII 361 (366)
Q Consensus 283 llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~raR~~vL~~I~ 361 (366)
++..+++|...|.-+-+.|| +|-.|+ +=.+++-..+.+++..+..|. .++..+|. +|.-+..++.
T Consensus 22 l~e~~~~vk~WI~l~IPkiE---DGNNFGV~VQeevl~~l~~v~~~~~~~~-------~~i~~Y~~----~Ra~~v~K~~ 87 (140)
T 1avo_B 22 VIEQLNLVTTWLQLQIPRIE---DGNNFGVAVQEKVFELMTSLHTKLEGFH-------TQISKYFS----ERGDAVTKAA 87 (140)
T ss_dssp HHHHHHHHHHHHHHTCCCCC---SSCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccc---CCCchhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHh
Confidence 56667777777766666664 555664 222233333333333444443 35555553 4555666777
Q ss_pred cccC
Q 040233 362 KHTN 365 (366)
Q Consensus 362 ~~~~ 365 (366)
++|+
T Consensus 88 k~p~ 91 (140)
T 1avo_B 88 KQPH 91 (140)
T ss_dssp HCTT
T ss_pred cCCC
Confidence 6665
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=34.61 E-value=1.2e+02 Score=29.31 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 040233 316 AVKIGVEEIKKKLGVFMKNVEDLGVQADTCSRDIRRA 352 (366)
Q Consensus 316 ~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~~I~ra 352 (366)
+.+.+..+|.+......+++-.+|.|..-|-|+++.-
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMAL 430 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHH
Confidence 5667888888888889999999999999999998754
No 10
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.76 E-value=1.1e+02 Score=19.32 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 040233 320 GVEEIKKKLGVFMKNVEDLGVQADTCSR 347 (366)
Q Consensus 320 ~v~eL~k~~~~~~~~Ld~Le~~V~~~f~ 347 (366)
.|.+|..+++.+.....+||.+|...=.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3677777788888888888877765433
No 11
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=28.18 E-value=62 Score=25.01 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 040233 317 VKIGVEEIKKKLGVFMKNVEDLGVQADTCSR 347 (366)
Q Consensus 317 v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f~ 347 (366)
+...|.++.+....+++++|++|+|+.-...
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 6678888889999999999999999877653
No 12
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=26.14 E-value=2e+02 Score=21.34 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHH
Q 040233 296 RLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMK-------NVEDLGVQADTCSRDI 349 (366)
Q Consensus 296 rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~-------~Ld~Le~~V~~~f~~I 349 (366)
.|...||.+.+..+-+..+..++++++|+....+.+-. .+--+|..|.+.||.+
T Consensus 36 hlqnviedihdfmqgggsggklqemmkefqqvldelnnhlqggkhtvhhieqnikeifhhl 96 (102)
T 1p68_A 36 HLQNVIEDIHDFMQGGGSGGKLQEMMKEFQQVLDELNNHLQGGKHTVHHIEQNIKEIFHHL 96 (102)
T ss_dssp HHHHHHHHHHTTTTTSSTTTHHHHTHHHHHHHHHHHHTTCCSCHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHhHHHHHHHH
Confidence 66667765544333222334577777777666655543 3455677777777754
No 13
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=25.09 E-value=1.8e+02 Score=22.50 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=28.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 040233 283 AIKDLDNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNV 335 (366)
Q Consensus 283 llkeldti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~L 335 (366)
+..||+.|..-++-|.+.+.+. +.++....-.+.+.||...|..+...+
T Consensus 11 ~~~el~~v~~n~~lL~EML~~~----~p~~~~~~~~el~~eL~~~c~~~qp~i 59 (103)
T 1wrd_A 11 LRSELEMVSGNVRVMSEMLTEL----VPTQAEPADLELLQELNRTCRAMQQRV 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----CTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999888643 332110111245555555555554443
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.95 E-value=3.3e+02 Score=24.22 Aligned_cols=19 Identities=21% Similarity=0.051 Sum_probs=9.5
Q ss_pred HhhhhhHHHHHHHHHHHHH
Q 040233 284 IKDLDNIRVLIDRLEIEVE 302 (366)
Q Consensus 284 lkeldti~~lV~rL~~~ie 302 (366)
-.+++.++.-+..+.+.++
T Consensus 31 p~el~~le~~~~~l~~~~~ 49 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAIL 49 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555444
No 15
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.69 E-value=2.2e+02 Score=21.24 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=26.5
Q ss_pred hhcccchHHHhhhhhHHHHHHHHHHHHHHhhhc
Q 040233 275 SMQVGTYIAIKDLDNIRVLIDRLEIEVEALLQN 307 (366)
Q Consensus 275 ~~~kGt~~llkeldti~~lV~rL~~~ie~~~~~ 307 (366)
...|=+|-.-+||++++.-+..|...|..+..-
T Consensus 12 ~~~KLSykeqrEle~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 12 SSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp SSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888899999999999999988765443
No 16
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.18 E-value=92 Score=19.48 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHH
Q 040233 320 GVEEIKKKLGVFMKNVEDLGVQADTC 345 (366)
Q Consensus 320 ~v~eL~k~~~~~~~~Ld~Le~~V~~~ 345 (366)
.|.+|..+++.+...-.+||.+|...
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 36778888888888888888887653
No 17
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.05 E-value=2.7e+02 Score=23.26 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 040233 285 KDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQAD 343 (366)
Q Consensus 285 keldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~ 343 (366)
.+|+.|+..|.+|...=+..+...+-- .-.+.+...+.++.+........|+.|+..+.
T Consensus 50 ~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 50 AMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777766666544334332211 11245777888888888888888888887653
Done!