Query 040233
Match_columns 366
No_of_seqs 138 out of 177
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 09:54:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040233.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040233hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ez3a_ a.47.2.1 (A:) Syntaxin 65.9 13 0.00097 27.8 8.3 61 284-344 16-77 (124)
2 d1lvfa_ a.47.2.1 (A:) Syntaxin 60.7 14 0.001 27.3 7.3 31 315-345 38-68 (106)
3 d1h6ga1 a.24.9.1 (A:377-507) a 45.5 43 0.0031 25.5 8.1 111 70-193 16-126 (131)
4 d1seta1 a.2.7.1 (A:1-110) Sery 32.6 54 0.0039 23.6 6.6 32 315-346 67-98 (110)
5 d1wrda1 a.7.8.1 (A:215-307) Ta 29.2 69 0.005 22.6 6.4 51 283-338 6-57 (93)
6 d1hf8a1 a.7.8.2 (A:150-281) Cl 27.7 71 0.0051 24.2 6.6 40 95-134 65-108 (132)
7 d1o3xa_ a.7.8.1 (A:) ADP-ribos 27.4 67 0.0049 23.5 6.3 52 284-338 24-75 (112)
8 d1hx8a1 a.7.8.2 (A:167-299) AP 26.6 1.2E+02 0.0086 22.9 7.8 39 95-133 62-104 (133)
9 g1avo.1 a.24.8.1 (A:,B:) Prote 24.3 1.2E+02 0.0085 24.7 7.8 85 256-365 66-151 (200)
10 d1vcta1 a.7.12.1 (A:9-107) Hyp 23.0 1.1E+02 0.0081 21.1 6.9 14 291-304 7-20 (99)
No 1
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=65.85 E-value=13 Score=27.76 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=44.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 040233 284 IKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDLGVQADT 344 (366)
Q Consensus 284 lkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~ 344 (366)
-++|+.|+..|.+|.+.=...+..+..- +..+.+...+.++.+........|+.|++++..
T Consensus 16 r~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~ 77 (124)
T d1ez3a_ 16 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 77 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777777776655444443322 223468889999999999999999999988765
No 2
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=60.69 E-value=14 Score=27.29 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 040233 315 EAVKIGVEEIKKKLGVFMKNVEDLGVQADTC 345 (366)
Q Consensus 315 e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~ 345 (366)
+++...-+||+..+...+.+|++|++-|.-.
T Consensus 38 ~e~~~~~~eL~~~l~siewdL~dLe~av~~v 68 (106)
T d1lvfa_ 38 EEIDWTTNELRNNLRSIEWDLEDLDETISIV 68 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4677889999999999999999999998854
No 3
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.45 E-value=43 Score=25.52 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=58.7
Q ss_pred HHHhccCHHHHHHHHhhccccccchhHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhccccccCCcchh
Q 040233 70 ECLLEMNQEVVKVILECKKDIWKSQELFELVEEYFESSLQTLDFCTALEKCLKRARDSQLLILVALQQFEEENDMGAGHR 149 (366)
Q Consensus 70 ~~lLe~~qe~~~~i~~~~~~~w~~~~l~~Lv~~Yfd~S~kalDiCnaL~~~I~~~r~~~~~l~~al~~l~~~~~~~~~~~ 149 (366)
|.|++++.....++-.-.. -++.++..-...|=+++.++.++|+.+.. +.--......++.+-.+++. -.+|
T Consensus 16 d~f~dt~~pL~~L~~AA~~--g~~~~~~e~a~~F~eh~~~l~e~a~l~~~-~s~ne~~v~~i~~aa~~l~~-----L~PQ 87 (131)
T d1h6ga1 16 DSFLETNVPLLVLIEAAKN--GNEKEVKEYAQVFREHANKLIEVANLACS-ISNNEEGVKLVRMSASQLEA-----LCPQ 87 (131)
T ss_dssp CTTTCCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHhcCcHHHHHHHHHhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHH-----HChH
Confidence 3444555444444332211 13445666677788999999999988632 22222223334444433332 1233
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHhHHHHHHHHHHHH
Q 040233 150 YVRTLEELKNFKAAGDPFTEEFFQIFQSVYKQQISMLEKLQLRK 193 (366)
Q Consensus 150 ~~~al~~L~~f~~~~npf~~~~~~~f~~i~~~~~~ll~~L~s~k 193 (366)
...|=.-|. .||-+.-...+|+.+.++..+.++.|...-
T Consensus 88 Vi~Aar~l~-----~~P~sk~a~en~e~~~~~W~~~v~~L~~~v 126 (131)
T d1h6ga1 88 VINAALALA-----AKPQSKLAQENMDLFKEQWEKQVRVLTDAV 126 (131)
T ss_dssp HHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 477776555677777776666666665443
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=32.57 E-value=54 Score=23.62 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 040233 315 EAVKIGVEEIKKKLGVFMKNVEDLGVQADTCS 346 (366)
Q Consensus 315 e~v~~~v~eL~k~~~~~~~~Ld~Le~~V~~~f 346 (366)
+++.+-+++|+.....+.+.+.+++..++...
T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 67 EALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777777666543
No 5
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.15 E-value=69 Score=22.55 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=31.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhhhhhH
Q 040233 283 AIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKNVEDL 338 (366)
Q Consensus 283 llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~Ld~L 338 (366)
+..||+.|..-|+-|.+.+.+. +++ ... .=.+.++||-..|..+...+-.|
T Consensus 6 l~~eLe~v~~n~~lL~eML~~~----~p~~~~~-~d~eli~eL~~~C~~~q~~i~~l 57 (93)
T d1wrda1 6 LRSELEMVSGNVRVMSEMLTEL----VPTQAEP-ADLELLQELNRTCRAMQQRVLEL 57 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----CTTTCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCCCCc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999988643 332 111 11356666666666666555444
No 6
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.73 E-value=71 Score=24.20 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=31.4
Q ss_pred hHhHHHHHHHHh----hHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 040233 95 ELFELVEEYFES----SLQTLDFCTALEKCLKRARDSQLLILVA 134 (366)
Q Consensus 95 ~l~~Lv~~Yfd~----S~kalDiCnaL~~~I~~~r~~~~~l~~a 134 (366)
-+-++++-|||- .+++++|+.-..+-.+++...+..-+.+
T Consensus 65 giinLLd~fFem~k~da~~al~iykr~~~q~e~L~~f~~~ck~~ 108 (132)
T d1hf8a1 65 GIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQV 108 (132)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355688888875 4789999999999888888887766653
No 7
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.36 E-value=67 Score=23.51 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=31.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHhhhhhhH
Q 040233 284 IKDLDNIRVLIDRLEIEVEALLQNVDFVIEEEAVKIGVEEIKKKLGVFMKNVEDL 338 (366)
Q Consensus 284 lkeldti~~lV~rL~~~ie~~~~~v~f~~~~e~v~~~v~eL~k~~~~~~~~Ld~L 338 (366)
..||+.|..-|+-|.+.+.+...+-... ..-.+.++||-..|..+...+-.|
T Consensus 24 ~~eLe~v~~n~~lL~eML~~~~~~~~~~---~~~~ell~eL~~~c~~~qp~i~~l 75 (112)
T d1o3xa_ 24 VNAIEEVNNNVKLLTEMVMSHSQGGAAA---GSSEDLMKELYQRCERMRPTLFRL 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCc---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999996543221111 112245555555555555554444
No 8
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=26.62 E-value=1.2e+02 Score=22.87 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=31.2
Q ss_pred hHhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 040233 95 ELFELVEEYFE----SSLQTLDFCTALEKCLKRARDSQLLILV 133 (366)
Q Consensus 95 ~l~~Lv~~Yfd----~S~kalDiCnaL~~~I~~~r~~~~~l~~ 133 (366)
-+-++++-||| +.+++++|+....+-.+++...|..-+.
T Consensus 62 giinLLd~fFem~k~da~~al~iyk~~~~q~e~L~~f~~~ck~ 104 (133)
T d1hx8a1 62 GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAEN 104 (133)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889998 5689999999999888888887776655
No 9
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.30 E-value=1.2e+02 Score=24.68 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhhhHhhhhhhcccchHHHhhhhhHHHHHHHHHHHHHHhhhcccch-hhhhHHHHHHHHHHHHHHHHhhh
Q 040233 256 DSLWKNYEHALKGQKEMISSMQVGTYIAIKDLDNIRVLIDRLEIEVEALLQNVDFV-IEEEAVKIGVEEIKKKLGVFMKN 334 (366)
Q Consensus 256 ~~~~~l~e~~l~~e~~~~~~~~kGt~~llkeldti~~lV~rL~~~ie~~~~~v~f~-~~~e~v~~~v~eL~k~~~~~~~~ 334 (366)
..++.+.+. ++.+. -.++..+.+|+..|.-+-+.|| +|-.|+ .=.|++-+.+.........|.+
T Consensus 66 ~~I~~l~~~-vkpei----------~~L~e~~~~vk~WV~l~IPkiE---DGNNFGV~VQe~vl~~l~~ve~~a~~~~~- 130 (200)
T g1avo.1 66 EKIVVLLQR-LKPEI----------KDVIEQLNLVTTWLQLQIPRIE---DGNNFGVAVQEKVFELMTSLHTKLEGFHT- 130 (200)
T ss_dssp HHHHHHHHH-HHHHH----------HHHHHHHHHHHHHHHHTCCCCC---SSCCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-HHHHH----------HHHHHHHHHHHHHHHHhCCccc---cCCcccHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 556666644 66653 3478889999999998888886 666776 3333333334444333333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 040233 335 VEDLGVQADTCSRDIRRARTVVLQRIIKHTN 365 (366)
Q Consensus 335 Ld~Le~~V~~~f~~I~raR~~vL~~I~~~~~ 365 (366)
++..+| .+|.-+..++.++|+
T Consensus 131 ------~i~kY~----~~Rak~vsK~~KyP~ 151 (200)
T g1avo.1 131 ------QISKYF----SERGDAVTKAAKQPH 151 (200)
T ss_dssp ------HHHHHH----HHHHHHHHHHHHCTT
T ss_pred ------HHHHHH----HHHHHHHHHHhhCCC
Confidence 333333 245556777777765
No 10
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.01 E-value=1.1e+02 Score=21.06 Aligned_cols=14 Identities=14% Similarity=0.238 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHh
Q 040233 291 RVLIDRLEIEVEAL 304 (366)
Q Consensus 291 ~~lV~rL~~~ie~~ 304 (366)
...+.++.+.+++|
T Consensus 7 ~~~l~~M~~~~~~m 20 (99)
T d1vcta1 7 KEIFIEMKDTVELM 20 (99)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
Done!