BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040234
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 295 QYPVHELSINR---KGTTSGLCSIYLRKQFGQAMSDHLFLYYQNRERISKVTF 344
QYP +++++ G T+ LC++ L ++ S +LFLY Q + R+ F
Sbjct: 132 QYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNPAF 184
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 295 QYPVHELSINR---KGTTSGLCSIYLRKQFGQAMSDHLFLYYQNRERISKVTF 344
QYP +++++ G T+ LC++ L ++ S +LFLY Q + R+ F
Sbjct: 132 QYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNPAF 184
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 295 QYPVHELSINR---KGTTSGLCSIYLRKQFGQAMSDHLFLYYQNRERISKVTF 344
QYP +++++ G T+ LC++ L ++ S +LFLY Q + R+ F
Sbjct: 132 QYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNPAF 184
>pdb|4E0Z|A Chain A, Protelomerase Tela R205a Covalently Complexed With
Substrate Dna
Length = 462
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 120 HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICH-CQKST 171
HP+ K+ +A YDEA R+ K + H L + E V++IC C KS+
Sbjct: 208 HPMLKIATGDAAMYDEAARVKMEKIANKHGALITF-ENYRQVLKICEDCLKSS 259
>pdb|4F41|A Chain A, Protelomerase Tela Mutant R255a Complexed With Cttg
Hairpin Dna
pdb|4F43|A Chain A, Protelomerase Tela Mutant R255a Complexed With Caag
Hairpin Dna
Length = 320
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 120 HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICH-CQKST 171
HP+ K+ +A YDEA R+ K + H L + E V++IC C KS+
Sbjct: 87 HPMLKIATGDAAMYDEARRVKMEKIANKHGALITF-ENYRQVLKICEDCLKSS 138
>pdb|4E0P|A Chain A, Protelomerase Tela Covalently Complexed With Substrate Dna
pdb|4E0Y|A Chain A, Protelomerase Tela Covalently Complexed With Mutated
Substrate Dna
Length = 462
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 120 HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICH-CQKST 171
HP+ K+ +A YDEA R+ K + H L + E V++IC C KS+
Sbjct: 208 HPMLKIATGDAAMYDEARRVKMEKIANKHGALITF-ENYRQVLKICEDCLKSS 259
>pdb|4E0G|A Chain A, Protelomerase Tela/dna Hairpin Product/vanadate Complex
Length = 462
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 120 HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICH-CQKST 171
HP+ K+ +A YDEA R+ K + H L + E V++IC C KS+
Sbjct: 208 HPMLKIATGDAAMYDEARRVKMEKIANKHGALITF-ENYRQVLKICEDCLKSS 259
>pdb|4E0J|A Chain A, Protelomerase Tela R255a Mutant Complexed With Dna Hairpin
Product
Length = 462
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 120 HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICH-CQKST 171
HP+ K+ +A YDEA R+ K + H L + E V++IC C KS+
Sbjct: 208 HPMLKIATGDAAMYDEARRVKMEKIANKHGALITF-ENYRQVLKICEDCLKSS 259
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 295 QYPVHELSINR---KGTTSGLCSIYLRKQFGQAMSDHLFLYYQNRERISKVTF 344
QYP +++++ G T LC++ L ++ S +LFLY Q + R+ F
Sbjct: 132 QYPSYKVAVTGHSLGGATVLLCALDLYQREEGLSSSNLFLYTQGQPRVGDPAF 184
>pdb|2UWF|A Chain A, Crystal Structure Of Family 10 Xylanase From Bacillus
Halodurans
Length = 356
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 213 GLQNMPPSDK---YGNMHSPQREYSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSK 269
G N +DK + H+ + + +V S++PEWF N + + P K N +
Sbjct: 61 GEWNWEGADKIVEFARKHNMELRFHTLVWHSQVPEWFFIDENGNRMVDETDPEKRKANKQ 120
Query: 270 LV 271
L+
Sbjct: 121 LL 122
>pdb|1B1X|A Chain A, Structure Of Diferric Mare Lactoferrin At 2.62a Resolution
pdb|1B7Z|A Chain A, Structure Of Oxalate Substituted Diferric Mare Lactoferrin
From Colostrum
pdb|1B7U|A Chain A, Structure Of Mare Apolactoferrin: The N And C Lobes Are In
The Closed Form
pdb|1QJM|A Chain A, Crystal Structure Of A Complex Of Lactoferrin With A
Lanthanide Ion (Sm3+) At 3.4 Anstrom Resolution
pdb|1I6B|A Chain A, Structure Of Equine Apolactoferrin At 3.2 A Resolution
Using Crystals Grown At 303k
pdb|3CR9|A Chain A, Crystal Structure Of The Complex Of Lactoferrin With 6-
(Hydroxymethyl)oxane-2,3,4,5-Tetrol At 3.49 A Resolution
Length = 689
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 135 EAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYTVSHLLLTLCLKLM 194
E F LLCL T KP+ E AES CH ++ +A++S S HL L L+
Sbjct: 567 EDFELLCLDG--TRKPVAE----AES----CHLARAPNHAVVSQSDRAQHLKKVLFLQQD 616
Query: 195 QYML----CP--FILF 204
Q+ CP F LF
Sbjct: 617 QFGGNGPDCPGKFCLF 632
>pdb|1F9B|A Chain A, Melanin Protein Interaction: X-Ray Structure Of The
Complex Of Mare Lactoferrin With Melanin Monomers
Length = 695
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 135 EAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYTVSHLLLTLCLKLM 194
E F LLCL T KP+ E AES CH ++ +A++S S HL L L+
Sbjct: 573 EDFELLCLDG--TRKPVAE----AES----CHLARAPNHAVVSQSDRAQHLKKVLFLQQD 622
Query: 195 QYML----CP--FILF 204
Q+ CP F LF
Sbjct: 623 QFGGNGPDCPGKFCLF 638
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,767,965
Number of Sequences: 62578
Number of extensions: 421895
Number of successful extensions: 791
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 13
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)