Query 040234
Match_columns 377
No_of_seqs 334 out of 2083
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-33 8.3E-38 287.3 15.9 214 1-221 187-412 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3.4E-32 7.3E-37 251.7 7.7 229 1-244 27-269 (287)
3 PLN03210 Resistant to P. syrin 100.0 2.4E-27 5.1E-32 255.4 21.8 212 1-220 215-436 (1153)
4 PLN03210 Resistant to P. syrin 99.1 5.7E-10 1.2E-14 121.3 11.4 49 234-284 957-1006(1153)
5 TIGR03015 pepcterm_ATPase puta 99.0 3.1E-08 6.6E-13 90.6 16.4 170 1-181 51-242 (269)
6 COG3903 Predicted ATPase [Gene 98.9 9E-10 2E-14 102.5 4.9 207 1-221 22-241 (414)
7 PF05729 NACHT: NACHT domain 98.9 6.5E-09 1.4E-13 87.5 9.6 135 1-144 8-163 (166)
8 PRK04841 transcriptional regul 98.8 6E-08 1.3E-12 103.7 15.3 164 1-182 40-230 (903)
9 PRK00411 cdc6 cell division co 98.7 4.5E-07 9.8E-12 87.7 14.4 169 1-177 63-255 (394)
10 COG2256 MGS1 ATPase related to 98.6 1.6E-06 3.4E-11 80.8 14.6 190 1-221 56-267 (436)
11 PF01637 Arch_ATPase: Archaeal 98.6 5.7E-07 1.2E-11 79.9 11.5 170 1-176 28-233 (234)
12 PRK06893 DNA replication initi 98.6 4.9E-07 1.1E-11 80.6 10.9 144 1-179 47-205 (229)
13 TIGR02928 orc1/cdc6 family rep 98.5 5.4E-06 1.2E-10 79.3 16.3 166 1-173 48-242 (365)
14 TIGR00635 ruvB Holliday juncti 98.4 1.1E-06 2.4E-11 81.9 9.0 160 1-179 38-203 (305)
15 PRK00080 ruvB Holliday junctio 98.3 5.7E-06 1.2E-10 78.0 11.7 160 1-179 59-224 (328)
16 TIGR03420 DnaA_homol_Hda DnaA 98.3 7E-06 1.5E-10 72.9 11.2 144 1-179 46-203 (226)
17 COG2909 MalT ATP-dependent tra 98.2 1.2E-05 2.5E-10 81.5 12.3 167 1-182 45-238 (894)
18 PRK13342 recombination factor 98.2 1.2E-05 2.6E-10 78.1 12.2 145 1-177 44-196 (413)
19 PF13401 AAA_22: AAA domain; P 98.2 4.1E-06 8.9E-11 67.6 7.4 104 2-113 13-125 (131)
20 PF13173 AAA_14: AAA domain 98.2 2.9E-06 6.3E-11 68.4 5.6 110 2-135 11-126 (128)
21 PRK14087 dnaA chromosomal repl 98.2 2.9E-05 6.3E-10 76.0 13.3 159 2-181 150-323 (450)
22 PRK08727 hypothetical protein; 98.2 1.8E-05 3.8E-10 70.8 10.8 133 2-167 50-196 (233)
23 PRK09087 hypothetical protein; 98.2 2.4E-05 5.1E-10 69.5 11.5 95 79-179 90-197 (226)
24 PF00308 Bac_DnaA: Bacterial d 98.1 3.3E-05 7.2E-10 68.3 11.0 150 2-178 43-209 (219)
25 TIGR00678 holB DNA polymerase 98.1 5.5E-05 1.2E-09 65.3 11.7 88 75-172 95-186 (188)
26 PRK14961 DNA polymerase III su 98.0 0.0001 2.3E-09 70.3 13.4 96 75-174 118-217 (363)
27 PRK14088 dnaA chromosomal repl 98.0 9.7E-05 2.1E-09 72.3 13.2 151 2-178 139-306 (440)
28 PRK05642 DNA replication initi 98.0 6.6E-05 1.4E-09 67.1 11.0 143 2-179 54-210 (234)
29 PRK14963 DNA polymerase III su 98.0 7.2E-05 1.6E-09 74.1 11.3 96 75-174 115-214 (504)
30 PLN03025 replication factor C 97.9 0.00012 2.6E-09 68.7 12.4 97 75-174 98-198 (319)
31 PRK06645 DNA polymerase III su 97.9 0.0002 4.3E-09 70.8 14.2 95 75-173 127-225 (507)
32 PRK12402 replication factor C 97.9 0.00012 2.7E-09 69.1 12.2 95 76-174 125-223 (337)
33 PRK08084 DNA replication initi 97.9 0.00013 2.8E-09 65.3 11.7 141 1-177 53-209 (235)
34 PRK12323 DNA polymerase III su 97.9 0.00014 3.1E-09 72.8 12.8 98 74-175 122-223 (700)
35 PRK07003 DNA polymerase III su 97.9 0.00011 2.4E-09 74.7 11.9 99 75-176 118-220 (830)
36 PRK14949 DNA polymerase III su 97.9 0.00013 2.9E-09 75.4 12.6 97 74-174 117-217 (944)
37 TIGR00362 DnaA chromosomal rep 97.9 0.00017 3.7E-09 70.0 12.9 152 2-178 145-311 (405)
38 PRK14957 DNA polymerase III su 97.9 0.00017 3.6E-09 71.9 12.5 95 74-172 117-215 (546)
39 PRK05564 DNA polymerase III su 97.9 0.00067 1.4E-08 63.5 15.8 94 75-176 92-189 (313)
40 PRK14960 DNA polymerase III su 97.9 0.00024 5.3E-09 71.4 13.3 95 75-173 117-215 (702)
41 PRK00149 dnaA chromosomal repl 97.9 0.00018 3.8E-09 70.9 12.4 150 2-178 157-323 (450)
42 PRK07471 DNA polymerase III su 97.8 0.00088 1.9E-08 63.8 16.4 96 75-178 140-239 (365)
43 PRK14962 DNA polymerase III su 97.8 0.00032 7E-09 69.0 13.7 101 75-178 116-220 (472)
44 PRK07940 DNA polymerase III su 97.8 0.00036 7.8E-09 67.0 13.7 94 75-177 116-213 (394)
45 PRK12422 chromosomal replicati 97.8 0.00055 1.2E-08 67.0 14.2 143 1-167 149-305 (445)
46 PRK14956 DNA polymerase III su 97.8 0.00016 3.4E-09 70.4 10.2 95 74-172 119-217 (484)
47 PRK09112 DNA polymerase III su 97.8 0.0014 3E-08 62.1 16.4 99 75-179 140-242 (351)
48 PRK05707 DNA polymerase III su 97.8 0.0015 3.3E-08 61.3 16.3 94 76-177 106-203 (328)
49 PRK13341 recombination factor 97.8 0.00018 3.8E-09 74.2 10.6 90 75-167 108-209 (725)
50 PRK14086 dnaA chromosomal repl 97.7 0.00067 1.5E-08 68.0 13.9 149 2-177 323-488 (617)
51 PRK04195 replication factor C 97.7 0.0003 6.5E-09 69.9 11.4 146 1-175 47-201 (482)
52 PRK08903 DnaA regulatory inact 97.7 0.00035 7.7E-09 62.1 10.8 100 77-180 91-202 (227)
53 PRK14964 DNA polymerase III su 97.7 0.00062 1.3E-08 67.0 13.0 95 75-173 115-213 (491)
54 PTZ00112 origin recognition co 97.7 0.00061 1.3E-08 70.2 13.1 168 1-178 789-983 (1164)
55 PRK07994 DNA polymerase III su 97.7 0.00039 8.4E-09 70.5 11.8 97 74-174 117-217 (647)
56 KOG2028 ATPase related to the 97.7 0.00053 1.2E-08 63.4 11.2 141 1-167 170-328 (554)
57 PRK14958 DNA polymerase III su 97.7 0.00054 1.2E-08 68.1 12.3 96 75-174 118-217 (509)
58 cd01128 rho_factor Transcripti 97.6 5E-05 1.1E-09 68.3 4.2 83 1-87 24-114 (249)
59 TIGR02397 dnaX_nterm DNA polym 97.6 0.0014 3E-08 62.4 14.1 99 75-177 116-218 (355)
60 PRK08691 DNA polymerase III su 97.6 0.0005 1.1E-08 69.7 11.3 96 75-174 118-217 (709)
61 PRK14951 DNA polymerase III su 97.6 0.0012 2.6E-08 66.8 13.8 96 75-174 123-222 (618)
62 TIGR01242 26Sp45 26S proteasom 97.6 0.00073 1.6E-08 64.6 11.9 140 1-167 164-326 (364)
63 PRK14969 DNA polymerase III su 97.6 0.00066 1.4E-08 67.9 11.7 95 75-173 118-216 (527)
64 cd00009 AAA The AAA+ (ATPases 97.6 0.00044 9.6E-09 56.1 8.9 96 1-114 27-130 (151)
65 PRK09376 rho transcription ter 97.6 8.9E-05 1.9E-09 70.0 4.9 84 1-87 177-267 (416)
66 PRK00440 rfc replication facto 97.5 0.0018 3.9E-08 60.6 13.3 94 77-174 103-200 (319)
67 PRK06620 hypothetical protein; 97.5 0.00065 1.4E-08 59.8 9.6 92 78-175 87-187 (214)
68 COG1474 CDC6 Cdc6-related prot 97.5 0.0026 5.6E-08 60.6 14.1 165 2-176 51-237 (366)
69 COG0593 DnaA ATPase involved i 97.5 0.0011 2.4E-08 63.2 11.4 153 2-179 122-292 (408)
70 PRK14959 DNA polymerase III su 97.5 0.0014 3E-08 66.1 11.9 91 75-167 118-212 (624)
71 PRK05896 DNA polymerase III su 97.5 0.0017 3.7E-08 65.1 12.5 94 76-173 119-216 (605)
72 PF05496 RuvB_N: Holliday junc 97.4 0.00051 1.1E-08 60.0 7.3 67 107-177 153-221 (233)
73 TIGR02881 spore_V_K stage V sp 97.4 0.0013 2.8E-08 59.9 10.4 67 78-146 107-193 (261)
74 PRK14952 DNA polymerase III su 97.4 0.0032 7E-08 63.4 13.9 94 75-172 117-214 (584)
75 PRK07764 DNA polymerase III su 97.4 0.0027 5.9E-08 66.5 13.6 95 75-173 119-217 (824)
76 PRK09111 DNA polymerase III su 97.3 0.0033 7.1E-08 63.7 13.3 97 75-175 131-231 (598)
77 TIGR02880 cbbX_cfxQ probable R 97.3 0.0055 1.2E-07 56.4 13.6 70 77-146 122-210 (284)
78 PRK08116 hypothetical protein; 97.3 0.00054 1.2E-08 62.5 6.8 94 2-114 123-221 (268)
79 PRK14955 DNA polymerase III su 97.3 0.002 4.4E-08 62.3 11.2 96 75-174 126-225 (397)
80 PRK04132 replication factor C 97.3 0.006 1.3E-07 63.8 14.8 149 1-173 574-727 (846)
81 PRK08769 DNA polymerase III su 97.3 0.017 3.7E-07 53.9 16.5 94 75-178 112-209 (319)
82 PRK14970 DNA polymerase III su 97.3 0.0049 1.1E-07 59.0 13.2 94 76-173 108-205 (367)
83 PRK14954 DNA polymerase III su 97.3 0.0022 4.8E-08 65.1 10.9 94 75-172 126-223 (620)
84 PF14516 AAA_35: AAA-like doma 97.3 0.013 2.9E-07 55.2 15.5 172 3-183 41-245 (331)
85 PRK14953 DNA polymerase III su 97.2 0.0088 1.9E-07 59.2 14.5 97 75-175 118-218 (486)
86 PRK14950 DNA polymerase III su 97.2 0.0075 1.6E-07 61.3 13.9 98 75-176 119-220 (585)
87 PRK08451 DNA polymerase III su 97.2 0.0085 1.8E-07 59.6 13.5 96 75-174 116-215 (535)
88 CHL00181 cbbX CbbX; Provisiona 97.1 0.0098 2.1E-07 54.8 13.0 69 78-146 124-211 (287)
89 PRK07133 DNA polymerase III su 97.1 0.011 2.5E-07 60.6 14.0 95 75-173 117-215 (725)
90 KOG0989 Replication factor C, 97.1 0.0022 4.7E-08 58.2 7.8 160 1-179 65-233 (346)
91 PF00004 AAA: ATPase family as 97.1 0.005 1.1E-07 49.2 9.5 18 1-18 6-23 (132)
92 TIGR00767 rho transcription te 97.1 0.00069 1.5E-08 64.4 4.8 84 1-87 176-266 (415)
93 PRK07993 DNA polymerase III su 97.0 0.015 3.4E-07 54.7 13.6 92 75-175 107-202 (334)
94 PRK06871 DNA polymerase III su 97.0 0.037 8E-07 51.8 15.9 92 75-175 106-201 (325)
95 PRK03992 proteasome-activating 97.0 0.012 2.6E-07 56.7 13.1 90 75-167 223-335 (389)
96 PRK14948 DNA polymerase III su 97.0 0.0083 1.8E-07 61.2 12.4 96 75-174 120-219 (620)
97 PRK06090 DNA polymerase III su 97.0 0.026 5.7E-07 52.6 14.4 92 75-178 107-202 (319)
98 TIGR02903 spore_lon_C ATP-depe 97.0 0.0087 1.9E-07 61.1 12.0 111 65-179 281-397 (615)
99 PRK14971 DNA polymerase III su 97.0 0.0099 2.1E-07 60.6 12.3 90 76-167 121-214 (614)
100 smart00382 AAA ATPases associa 96.9 0.0037 7.9E-08 50.1 7.2 27 1-27 10-36 (148)
101 PRK06305 DNA polymerase III su 96.9 0.021 4.6E-07 56.1 13.7 94 75-172 120-217 (451)
102 PRK06647 DNA polymerase III su 96.9 0.026 5.6E-07 57.0 14.3 96 75-174 118-217 (563)
103 COG3899 Predicted ATPase [Gene 96.8 0.012 2.5E-07 62.4 12.1 104 75-183 153-266 (849)
104 PF05621 TniB: Bacterial TniB 96.8 0.027 5.8E-07 51.6 12.8 167 2-175 70-259 (302)
105 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0039 8.5E-08 56.5 7.2 45 2-49 78-122 (274)
106 CHL00176 ftsH cell division pr 96.8 0.026 5.7E-07 57.7 13.9 140 1-167 224-386 (638)
107 COG1373 Predicted ATPase (AAA+ 96.8 0.011 2.4E-07 57.1 10.8 63 76-139 94-162 (398)
108 PRK05563 DNA polymerase III su 96.8 0.028 6E-07 56.8 13.9 95 75-173 118-216 (559)
109 PRK07399 DNA polymerase III su 96.8 0.078 1.7E-06 49.5 15.9 97 75-179 123-223 (314)
110 TIGR01241 FtsH_fam ATP-depende 96.8 0.025 5.5E-07 56.4 13.4 140 1-167 96-258 (495)
111 PHA02544 44 clamp loader, smal 96.7 0.012 2.6E-07 55.0 10.2 67 76-142 100-171 (316)
112 PTZ00454 26S protease regulato 96.7 0.02 4.3E-07 55.2 11.7 140 1-167 187-349 (398)
113 PRK14965 DNA polymerase III su 96.7 0.017 3.8E-07 58.5 11.5 91 75-167 118-212 (576)
114 TIGR03689 pup_AAA proteasome A 96.7 0.025 5.4E-07 56.1 12.1 71 75-145 288-379 (512)
115 PRK08181 transposase; Validate 96.6 0.0034 7.4E-08 57.1 5.4 27 1-27 114-140 (269)
116 PRK06964 DNA polymerase III su 96.5 0.044 9.6E-07 51.6 12.4 91 75-177 131-225 (342)
117 PRK06921 hypothetical protein; 96.5 0.0085 1.8E-07 54.6 7.0 27 2-28 126-153 (266)
118 PRK12377 putative replication 96.5 0.007 1.5E-07 54.4 6.3 26 2-27 110-135 (248)
119 COG3267 ExeA Type II secretory 96.4 0.098 2.1E-06 46.5 13.0 170 2-179 60-247 (269)
120 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.0056 1.2E-07 50.9 4.8 46 69-114 87-138 (159)
121 PF13191 AAA_16: AAA ATPase do 96.4 0.0089 1.9E-07 50.9 6.3 20 1-20 32-51 (185)
122 PRK06526 transposase; Provisio 96.3 0.0052 1.1E-07 55.6 4.8 19 1-19 106-124 (254)
123 TIGR02639 ClpA ATP-dependent C 96.3 0.026 5.7E-07 59.1 10.6 123 1-144 211-358 (731)
124 PRK08058 DNA polymerase III su 96.3 0.076 1.6E-06 50.0 12.7 68 75-142 109-180 (329)
125 TIGR02640 gas_vesic_GvpN gas v 96.2 0.041 8.9E-07 50.1 10.2 18 1-18 29-46 (262)
126 PRK09183 transposase/IS protei 96.2 0.0089 1.9E-07 54.3 5.7 18 1-18 110-127 (259)
127 PRK12608 transcription termina 96.2 0.015 3.2E-07 55.0 7.2 81 2-87 142-231 (380)
128 KOG2227 Pre-initiation complex 96.1 0.16 3.4E-06 49.0 13.5 159 2-167 184-360 (529)
129 PF04665 Pox_A32: Poxvirus A32 96.1 0.0081 1.8E-07 53.4 4.7 27 2-28 22-48 (241)
130 PRK07952 DNA replication prote 96.1 0.015 3.2E-07 52.2 6.4 25 2-26 108-132 (244)
131 PRK08699 DNA polymerase III su 96.1 0.047 1E-06 51.2 9.9 68 76-143 113-184 (325)
132 TIGR01243 CDC48 AAA family ATP 96.1 0.036 7.8E-07 58.1 10.0 140 1-167 495-655 (733)
133 PTZ00361 26 proteosome regulat 96.1 0.019 4.2E-07 55.9 7.5 140 1-167 225-387 (438)
134 KOG0741 AAA+-type ATPase [Post 96.0 0.058 1.3E-06 52.7 9.9 117 1-144 546-686 (744)
135 PRK10536 hypothetical protein; 95.9 0.053 1.2E-06 48.7 9.0 40 72-114 169-213 (262)
136 CHL00195 ycf46 Ycf46; Provisio 95.9 0.043 9.4E-07 54.3 9.3 142 1-167 267-427 (489)
137 PRK06835 DNA replication prote 95.9 0.013 2.8E-07 55.0 5.1 27 2-28 192-218 (329)
138 COG1484 DnaC DNA replication p 95.8 0.028 6E-07 50.8 6.9 65 2-87 114-178 (254)
139 PHA00729 NTP-binding motif con 95.8 0.061 1.3E-06 47.4 8.7 17 2-18 26-42 (226)
140 PRK08939 primosomal protein Dn 95.8 0.014 3.1E-07 54.2 5.0 90 2-113 165-260 (306)
141 PF07728 AAA_5: AAA domain (dy 95.8 0.0063 1.4E-07 49.4 2.4 17 1-17 7-23 (139)
142 TIGR00602 rad24 checkpoint pro 95.7 0.051 1.1E-06 55.4 8.8 52 123-175 266-322 (637)
143 COG2812 DnaX DNA polymerase II 95.7 0.05 1.1E-06 53.8 8.5 71 75-145 118-192 (515)
144 TIGR03345 VI_ClpV1 type VI sec 95.7 0.091 2E-06 55.8 11.0 68 75-144 279-363 (852)
145 PF01695 IstB_IS21: IstB-like 95.6 0.0086 1.9E-07 51.1 2.7 26 2-27 56-81 (178)
146 COG1222 RPT1 ATP-dependent 26S 95.6 0.24 5.2E-06 46.3 12.0 139 1-173 193-359 (406)
147 cd01131 PilT Pilus retraction 95.6 0.025 5.4E-07 49.1 5.6 103 2-117 10-112 (198)
148 KOG2543 Origin recognition com 95.5 0.034 7.3E-07 52.1 6.4 132 2-144 39-193 (438)
149 PF13177 DNA_pol3_delta2: DNA 95.5 0.058 1.3E-06 45.2 7.3 57 76-132 102-162 (162)
150 PRK09361 radB DNA repair and r 95.5 0.021 4.5E-07 50.6 4.8 28 1-28 31-58 (225)
151 PF02562 PhoH: PhoH-like prote 95.4 0.032 7E-07 48.5 5.6 39 73-114 113-156 (205)
152 KOG0744 AAA+-type ATPase [Post 95.4 0.071 1.5E-06 49.0 7.9 71 1-87 185-261 (423)
153 KOG0733 Nuclear AAA ATPase (VC 95.3 0.21 4.4E-06 49.8 11.2 121 1-145 553-693 (802)
154 cd00544 CobU Adenosylcobinamid 95.3 0.039 8.4E-07 46.6 5.5 119 2-145 8-145 (169)
155 TIGR01243 CDC48 AAA family ATP 95.2 0.096 2.1E-06 55.0 9.5 144 1-173 220-383 (733)
156 TIGR02237 recomb_radB DNA repa 95.2 0.022 4.8E-07 49.8 4.1 28 1-28 20-47 (209)
157 PF08423 Rad51: Rad51; InterP 95.2 0.042 9.1E-07 49.8 5.8 44 1-50 46-95 (256)
158 PRK10865 protein disaggregatio 95.2 0.2 4.2E-06 53.5 11.5 18 1-18 606-623 (857)
159 cd01123 Rad51_DMC1_radA Rad51_ 95.1 0.041 8.8E-07 49.0 5.6 27 2-28 28-60 (235)
160 KOG0730 AAA+-type ATPase [Post 95.1 0.19 4.1E-06 50.4 10.4 122 1-146 476-617 (693)
161 PRK04296 thymidine kinase; Pro 95.1 0.017 3.7E-07 49.9 2.7 104 2-115 11-117 (190)
162 PRK10733 hflB ATP-dependent me 95.0 0.23 5E-06 51.2 11.4 122 1-146 193-337 (644)
163 COG0470 HolB ATPase involved i 95.0 0.13 2.9E-06 48.0 9.1 60 75-134 108-171 (325)
164 KOG0735 AAA+-type ATPase [Post 95.0 0.23 4.9E-06 50.4 10.7 155 2-180 440-619 (952)
165 TIGR02639 ClpA ATP-dependent C 95.0 0.18 3.9E-06 52.9 10.8 18 1-18 492-509 (731)
166 PRK08118 topology modulation p 95.0 0.04 8.7E-07 46.4 4.9 26 1-26 9-37 (167)
167 COG0542 clpA ATP-binding subun 95.0 0.069 1.5E-06 55.1 7.4 87 1-99 529-618 (786)
168 cd00983 recA RecA is a bacter 95.0 0.051 1.1E-06 50.7 5.9 28 1-28 63-90 (325)
169 CHL00095 clpC Clp protease ATP 94.9 0.15 3.4E-06 54.1 10.1 121 1-142 208-352 (821)
170 PRK07276 DNA polymerase III su 94.9 0.48 1E-05 43.6 11.9 66 75-141 103-172 (290)
171 cd01120 RecA-like_NTPases RecA 94.9 0.053 1.1E-06 44.7 5.3 28 1-28 7-34 (165)
172 TIGR03346 chaperone_ClpB ATP-d 94.9 0.2 4.4E-06 53.4 10.8 19 1-19 603-621 (852)
173 cd01125 repA Hexameric Replica 94.9 0.24 5.2E-06 44.3 9.8 17 1-17 9-25 (239)
174 cd01393 recA_like RecA is a b 94.8 0.11 2.4E-06 45.9 7.6 27 2-28 28-60 (226)
175 PLN00020 ribulose bisphosphate 94.7 0.83 1.8E-05 43.3 13.1 20 1-20 156-175 (413)
176 TIGR02012 tigrfam_recA protein 94.7 0.068 1.5E-06 49.8 6.0 76 1-86 63-143 (321)
177 PTZ00202 tuzin; Provisional 94.7 0.13 2.9E-06 49.6 7.8 128 1-143 294-433 (550)
178 KOG0991 Replication factor C, 94.7 0.38 8.2E-06 42.3 9.9 25 1-25 56-81 (333)
179 PRK11034 clpA ATP-dependent Cl 94.6 0.16 3.5E-06 53.1 8.9 67 75-143 277-361 (758)
180 PRK09354 recA recombinase A; P 94.6 0.076 1.7E-06 50.0 5.9 76 1-86 68-148 (349)
181 PRK11331 5-methylcytosine-spec 94.6 0.058 1.3E-06 52.4 5.3 33 1-34 202-236 (459)
182 TIGR01420 pilT_fam pilus retra 94.5 0.063 1.4E-06 50.9 5.3 101 2-115 131-231 (343)
183 cd01394 radB RadB. The archaea 94.5 0.052 1.1E-06 47.8 4.4 28 1-28 27-54 (218)
184 TIGR00708 cobA cob(I)alamin ad 94.5 0.097 2.1E-06 44.2 5.7 46 66-114 86-140 (173)
185 COG1066 Sms Predicted ATP-depe 94.5 0.11 2.4E-06 49.4 6.6 76 2-86 102-178 (456)
186 PRK05541 adenylylsulfate kinas 94.5 0.12 2.5E-06 43.9 6.4 27 1-27 15-41 (176)
187 TIGR03346 chaperone_ClpB ATP-d 94.4 0.29 6.2E-06 52.3 10.6 123 1-144 202-349 (852)
188 PRK05800 cobU adenosylcobinami 94.4 0.02 4.2E-07 48.5 1.5 16 2-17 10-25 (170)
189 cd03228 ABCC_MRP_Like The MRP 94.4 0.23 5.1E-06 41.8 8.2 48 69-119 107-160 (171)
190 PRK10865 protein disaggregatio 94.4 0.28 6.2E-06 52.3 10.5 68 75-144 270-354 (857)
191 COG1618 Predicted nucleotide k 94.3 0.034 7.3E-07 45.9 2.6 33 1-33 13-47 (179)
192 TIGR00763 lon ATP-dependent pr 94.3 0.29 6.3E-06 51.7 10.1 21 1-21 355-375 (775)
193 COG0468 RecA RecA/RadA recombi 94.2 0.078 1.7E-06 48.4 4.9 80 1-86 68-151 (279)
194 COG2255 RuvB Holliday junction 94.1 0.45 9.7E-06 43.2 9.3 71 107-181 155-227 (332)
195 TIGR02858 spore_III_AA stage I 94.1 0.17 3.8E-06 46.1 7.1 40 75-117 193-232 (270)
196 PRK05986 cob(I)alamin adenolsy 94.0 0.091 2E-06 45.0 4.8 49 66-114 104-158 (191)
197 PF07693 KAP_NTPase: KAP famil 94.0 0.82 1.8E-05 42.7 11.8 18 3-20 30-47 (325)
198 PRK07261 topology modulation p 94.0 0.18 3.9E-06 42.7 6.6 17 1-17 8-24 (171)
199 TIGR03345 VI_ClpV1 type VI sec 93.9 0.16 3.4E-06 54.0 7.3 19 1-19 604-622 (852)
200 PF00448 SRP54: SRP54-type pro 93.8 0.11 2.4E-06 45.0 5.1 49 1-53 9-57 (196)
201 PF05673 DUF815: Protein of un 93.7 0.25 5.4E-06 44.0 7.0 19 2-20 61-79 (249)
202 PF13207 AAA_17: AAA domain; P 93.6 0.044 9.5E-07 43.1 2.1 17 1-17 7-23 (121)
203 PRK06762 hypothetical protein; 93.6 0.32 6.8E-06 40.7 7.3 17 1-17 10-26 (166)
204 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.23 4.9E-06 44.4 6.8 27 2-28 30-56 (237)
205 PF00006 ATP-synt_ab: ATP synt 93.5 0.32 7E-06 42.7 7.5 78 2-87 24-116 (215)
206 KOG0733 Nuclear AAA ATPase (VC 93.4 0.55 1.2E-05 47.0 9.4 63 1-87 231-293 (802)
207 COG4088 Predicted nucleotide k 93.4 0.33 7.2E-06 41.9 7.0 20 1-20 9-28 (261)
208 PRK12597 F0F1 ATP synthase sub 93.4 0.25 5.4E-06 48.4 7.1 44 2-48 152-195 (461)
209 cd03247 ABCC_cytochrome_bd The 93.3 0.47 1E-05 40.2 8.0 47 69-118 109-161 (178)
210 PF03969 AFG1_ATPase: AFG1-lik 93.2 0.16 3.5E-06 48.4 5.5 92 2-114 71-167 (362)
211 COG1223 Predicted ATPase (AAA+ 93.2 1.8 3.9E-05 38.9 11.4 140 1-167 159-317 (368)
212 PF00154 RecA: recA bacterial 93.2 0.34 7.4E-06 45.2 7.5 76 2-87 62-142 (322)
213 PRK06067 flagellar accessory p 93.2 0.26 5.5E-06 43.9 6.5 77 2-86 34-130 (234)
214 CHL00095 clpC Clp protease ATP 93.2 0.21 4.6E-06 53.1 6.9 101 1-113 547-661 (821)
215 PRK09280 F0F1 ATP synthase sub 93.2 0.29 6.2E-06 47.9 7.2 83 2-87 153-249 (463)
216 PF13671 AAA_33: AAA domain; P 93.1 0.1 2.3E-06 42.2 3.6 18 1-18 7-24 (143)
217 COG0464 SpoVK ATPases of the A 93.0 0.61 1.3E-05 46.6 9.6 142 1-167 284-445 (494)
218 PF10443 RNA12: RNA12 protein; 93.0 1.3 2.8E-05 42.7 11.1 101 77-183 149-284 (431)
219 PF07724 AAA_2: AAA domain (Cd 92.9 0.074 1.6E-06 45.0 2.5 33 1-34 11-44 (171)
220 cd01129 PulE-GspE PulE/GspE Th 92.9 0.27 5.8E-06 44.7 6.3 81 2-96 89-169 (264)
221 cd03115 SRP The signal recogni 92.9 0.48 1E-05 39.9 7.5 20 1-20 8-27 (173)
222 cd01135 V_A-ATPase_B V/A-type 92.9 0.37 8.1E-06 43.8 7.0 45 2-49 78-125 (276)
223 KOG0743 AAA+-type ATPase [Post 92.9 2.6 5.6E-05 40.8 12.8 53 123-182 362-414 (457)
224 COG2607 Predicted ATPase (AAA+ 92.7 0.31 6.8E-06 43.0 6.0 82 3-113 95-182 (287)
225 TIGR01039 atpD ATP synthase, F 92.7 0.37 8E-06 47.1 7.2 44 2-48 152-195 (461)
226 PRK07132 DNA polymerase III su 92.6 3.3 7.1E-05 38.4 13.0 94 75-178 89-186 (299)
227 PF08433 KTI12: Chromatin asso 92.5 0.27 5.9E-06 44.8 5.7 19 1-19 9-27 (270)
228 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.4 0.35 7.6E-06 39.6 5.8 94 2-118 35-131 (144)
229 cd03214 ABC_Iron-Siderophores_ 92.4 0.6 1.3E-05 39.7 7.4 112 2-118 34-162 (180)
230 PRK08233 hypothetical protein; 92.3 0.25 5.5E-06 41.8 5.1 18 1-18 11-28 (182)
231 PF13481 AAA_25: AAA domain; P 92.3 0.15 3.4E-06 43.7 3.7 18 1-18 40-57 (193)
232 PF01583 APS_kinase: Adenylyls 92.2 0.12 2.6E-06 42.9 2.7 27 1-27 10-36 (156)
233 KOG2228 Origin recognition com 92.2 1.8 4E-05 40.3 10.5 141 1-145 57-220 (408)
234 PF13604 AAA_30: AAA domain; P 92.2 0.084 1.8E-06 45.8 1.9 34 77-112 94-129 (196)
235 COG1875 NYN ribonuclease and A 92.2 0.43 9.2E-06 44.8 6.5 34 77-113 352-387 (436)
236 TIGR03881 KaiC_arch_4 KaiC dom 92.1 0.52 1.1E-05 41.7 7.0 27 2-28 29-55 (229)
237 PRK10787 DNA-binding ATP-depen 92.1 0.52 1.1E-05 49.7 8.0 41 104-144 465-506 (784)
238 cd01122 GP4d_helicase GP4d_hel 92.1 0.95 2.1E-05 41.2 8.9 43 2-51 39-82 (271)
239 cd01121 Sms Sms (bacterial rad 92.1 0.33 7.2E-06 46.4 6.0 27 2-28 91-117 (372)
240 PF13238 AAA_18: AAA domain; P 92.1 0.098 2.1E-06 41.4 2.1 17 1-17 6-22 (129)
241 PRK04328 hypothetical protein; 92.0 0.34 7.5E-06 43.6 5.7 27 2-28 32-58 (249)
242 PRK08533 flagellar accessory p 91.9 0.69 1.5E-05 41.1 7.5 27 2-28 33-59 (230)
243 KOG0731 AAA+-type ATPase conta 91.9 2.6 5.7E-05 43.7 12.3 96 75-174 402-521 (774)
244 cd03223 ABCD_peroxisomal_ALDP 91.7 0.59 1.3E-05 39.2 6.5 107 2-117 36-151 (166)
245 PLN03187 meiotic recombination 91.7 0.28 6.1E-06 46.3 4.9 14 2-15 135-148 (344)
246 COG2884 FtsE Predicted ATPase 91.6 1 2.2E-05 38.6 7.6 55 64-120 143-203 (223)
247 TIGR01359 UMP_CMP_kin_fam UMP- 91.6 1.1 2.5E-05 37.9 8.3 17 1-17 7-23 (183)
248 PRK04301 radA DNA repair and r 91.5 0.43 9.4E-06 44.7 6.0 17 1-17 110-126 (317)
249 COG0396 sufC Cysteine desulfur 91.3 1.9 4.1E-05 38.0 9.2 51 72-124 158-214 (251)
250 COG0563 Adk Adenylate kinase a 91.3 0.34 7.3E-06 41.3 4.6 16 1-16 8-23 (178)
251 PRK11889 flhF flagellar biosyn 91.3 0.95 2E-05 43.5 7.9 19 1-19 249-267 (436)
252 PRK10867 signal recognition pa 91.2 0.56 1.2E-05 45.8 6.6 20 1-20 108-127 (433)
253 TIGR03305 alt_F1F0_F1_bet alte 91.2 0.56 1.2E-05 45.8 6.5 44 2-49 147-191 (449)
254 PF07726 AAA_3: ATPase family 91.1 0.096 2.1E-06 41.7 1.0 22 2-23 8-29 (131)
255 TIGR03574 selen_PSTK L-seryl-t 91.0 0.49 1.1E-05 42.6 5.8 19 1-19 7-25 (249)
256 cd02027 APSK Adenosine 5'-phos 91.0 1.3 2.7E-05 36.5 7.7 18 1-18 7-24 (149)
257 TIGR03575 selen_PSTK_euk L-ser 91.0 0.96 2.1E-05 42.6 7.7 18 1-18 7-24 (340)
258 PRK00771 signal recognition pa 90.9 0.65 1.4E-05 45.4 6.7 20 1-20 103-122 (437)
259 KOG1514 Origin recognition com 90.9 4.1 8.8E-05 41.7 12.2 162 2-175 431-619 (767)
260 PRK03839 putative kinase; Prov 90.9 0.15 3.3E-06 43.3 2.1 18 1-18 8-25 (180)
261 PF07015 VirC1: VirC1 protein; 90.9 0.47 1E-05 41.9 5.2 26 2-27 11-36 (231)
262 TIGR03878 thermo_KaiC_2 KaiC d 90.7 0.57 1.2E-05 42.5 5.9 28 1-28 44-71 (259)
263 TIGR00959 ffh signal recogniti 90.6 1 2.2E-05 43.9 7.8 18 1-18 107-124 (428)
264 TIGR02236 recomb_radA DNA repa 90.6 0.63 1.4E-05 43.4 6.2 16 2-17 104-119 (310)
265 KOG1969 DNA replication checkp 90.6 0.61 1.3E-05 47.6 6.2 64 1-88 334-399 (877)
266 TIGR01447 recD exodeoxyribonuc 90.5 0.94 2E-05 46.1 7.7 32 79-113 262-295 (586)
267 KOG3022 Predicted ATPase, nucl 90.5 0.56 1.2E-05 42.2 5.3 105 2-114 57-193 (300)
268 cd03216 ABC_Carb_Monos_I This 90.4 0.6 1.3E-05 39.0 5.3 106 2-118 35-146 (163)
269 COG1192 Soj ATPases involved i 90.4 0.23 4.9E-06 45.0 2.9 31 2-32 12-42 (259)
270 PF00406 ADK: Adenylate kinase 90.3 0.7 1.5E-05 38.0 5.6 17 1-17 4-20 (151)
271 TIGR03499 FlhF flagellar biosy 90.3 1 2.3E-05 41.3 7.2 19 1-19 202-220 (282)
272 TIGR02238 recomb_DMC1 meiotic 90.3 0.42 9.1E-06 44.6 4.7 15 1-15 104-118 (313)
273 TIGR02524 dot_icm_DotB Dot/Icm 90.3 0.19 4.1E-06 47.8 2.4 88 2-94 143-230 (358)
274 cd01132 F1_ATPase_alpha F1 ATP 90.2 0.94 2E-05 41.2 6.7 86 2-94 78-180 (274)
275 PRK11034 clpA ATP-dependent Cl 90.2 0.65 1.4E-05 48.7 6.5 18 1-18 496-513 (758)
276 PRK09519 recA DNA recombinatio 90.2 0.54 1.2E-05 49.1 5.7 75 2-86 69-148 (790)
277 cd03230 ABC_DR_subfamily_A Thi 90.2 1.9 4.1E-05 36.3 8.3 49 68-118 105-159 (173)
278 cd00984 DnaB_C DnaB helicase C 90.1 1.2 2.5E-05 39.8 7.3 43 2-51 22-65 (242)
279 PRK10875 recD exonuclease V su 90.0 1.2 2.7E-05 45.4 8.1 103 2-112 176-300 (615)
280 cd03246 ABCC_Protease_Secretio 90.0 0.76 1.7E-05 38.7 5.7 48 69-118 107-160 (173)
281 KOG0735 AAA+-type ATPase [Post 90.0 3.5 7.5E-05 42.3 10.8 144 1-173 709-872 (952)
282 cd03222 ABC_RNaseL_inhibitor T 90.0 0.99 2.1E-05 38.4 6.4 25 2-27 34-58 (177)
283 CHL00060 atpB ATP synthase CF1 90.0 0.93 2E-05 44.7 6.9 45 2-49 170-214 (494)
284 PF00910 RNA_helicase: RNA hel 89.9 0.17 3.8E-06 39.0 1.5 21 1-21 6-26 (107)
285 PRK00625 shikimate kinase; Pro 89.9 0.22 4.7E-06 42.2 2.2 18 1-18 8-25 (173)
286 PRK11823 DNA repair protein Ra 89.8 0.7 1.5E-05 45.5 5.9 27 2-28 89-115 (446)
287 COG3854 SpoIIIAA ncharacterize 89.7 0.83 1.8E-05 40.2 5.6 106 1-116 145-255 (308)
288 COG5635 Predicted NTPase (NACH 89.7 0.63 1.4E-05 49.6 5.9 125 2-136 231-370 (824)
289 TIGR00416 sms DNA repair prote 89.6 0.77 1.7E-05 45.2 6.1 27 2-28 103-129 (454)
290 PRK08972 fliI flagellum-specif 89.6 1.1 2.3E-05 43.7 6.9 78 2-87 171-263 (444)
291 PTZ00088 adenylate kinase 1; P 89.6 1.3 2.7E-05 39.4 6.9 17 1-17 14-30 (229)
292 COG0466 Lon ATP-dependent Lon 89.6 0.7 1.5E-05 47.1 5.7 127 1-144 358-508 (782)
293 PRK05917 DNA polymerase III su 89.5 4.7 0.0001 37.1 10.7 57 75-131 94-154 (290)
294 PRK12678 transcription termina 89.5 0.6 1.3E-05 46.8 5.2 32 2-33 425-457 (672)
295 COG0529 CysC Adenylylsulfate k 89.5 0.21 4.6E-06 42.0 1.8 21 1-21 31-51 (197)
296 PRK13947 shikimate kinase; Pro 89.5 0.24 5.2E-06 41.6 2.2 20 1-20 9-28 (171)
297 PRK14974 cell division protein 89.4 1.4 3E-05 41.5 7.4 20 1-20 148-167 (336)
298 COG4608 AppF ABC-type oligopep 89.4 1.4 3E-05 39.8 7.0 116 2-121 48-177 (268)
299 COG1121 ZnuC ABC-type Mn/Zn tr 89.2 0.75 1.6E-05 41.3 5.2 51 66-118 147-203 (254)
300 PRK10463 hydrogenase nickel in 89.2 0.52 1.1E-05 43.2 4.3 25 2-26 113-137 (290)
301 PRK05922 type III secretion sy 89.2 0.69 1.5E-05 45.0 5.3 16 2-17 166-181 (434)
302 KOG2035 Replication factor C, 89.2 4.7 0.0001 36.6 10.0 101 76-179 126-231 (351)
303 PRK00131 aroK shikimate kinase 89.2 0.26 5.6E-06 41.3 2.2 18 1-18 12-29 (175)
304 TIGR02525 plasmid_TraJ plasmid 89.2 0.48 1E-05 45.3 4.2 85 2-95 158-244 (372)
305 PF01656 CbiA: CobQ/CobB/MinD/ 89.1 0.31 6.6E-06 41.7 2.6 19 2-20 8-26 (195)
306 CHL00206 ycf2 Ycf2; Provisiona 89.0 3.3 7.2E-05 47.3 10.8 68 74-141 1730-1814(2281)
307 CHL00059 atpA ATP synthase CF1 88.8 1.4 3E-05 43.4 7.1 79 2-87 150-244 (485)
308 TIGR02782 TrbB_P P-type conjug 88.8 0.44 9.6E-06 44.2 3.6 83 2-96 141-224 (299)
309 TIGR01650 PD_CobS cobaltochela 88.7 3.8 8.3E-05 38.3 9.7 21 1-21 72-92 (327)
310 TIGR01351 adk adenylate kinase 88.7 1.8 3.8E-05 37.8 7.2 17 1-17 7-23 (210)
311 cd02034 CooC The accessory pro 88.6 1.2 2.5E-05 35.0 5.4 20 1-20 7-26 (116)
312 PHA02518 ParA-like protein; Pr 88.6 0.35 7.5E-06 42.0 2.7 19 2-20 10-28 (211)
313 TIGR02788 VirB11 P-type DNA tr 88.6 0.84 1.8E-05 42.5 5.4 101 2-115 153-254 (308)
314 PF00485 PRK: Phosphoribulokin 88.6 0.31 6.6E-06 42.1 2.2 19 1-19 7-25 (194)
315 PTZ00301 uridine kinase; Provi 88.5 0.26 5.5E-06 43.2 1.7 20 2-21 12-31 (210)
316 TIGR02239 recomb_RAD51 DNA rep 88.5 0.76 1.6E-05 43.0 5.0 14 2-15 105-118 (316)
317 PRK06002 fliI flagellum-specif 88.5 1 2.2E-05 44.0 5.9 16 2-17 174-189 (450)
318 PRK12724 flagellar biosynthesi 88.4 2.5 5.4E-05 41.0 8.4 17 1-17 231-247 (432)
319 cd02037 MRP-like MRP (Multiple 88.4 1.1 2.4E-05 37.6 5.6 18 2-19 9-26 (169)
320 PRK14722 flhF flagellar biosyn 88.4 1.5 3.2E-05 41.9 6.9 80 1-86 145-225 (374)
321 cd03238 ABC_UvrA The excision 88.4 1.9 4.2E-05 36.5 7.0 58 69-128 98-161 (176)
322 COG3640 CooC CO dehydrogenase 88.4 0.47 1E-05 41.8 3.2 32 2-33 9-40 (255)
323 cd02019 NK Nucleoside/nucleoti 88.4 0.33 7.2E-06 34.1 1.9 17 1-17 7-23 (69)
324 TIGR01313 therm_gnt_kin carboh 88.3 2.5 5.4E-05 35.0 7.6 17 1-17 6-22 (163)
325 cd01130 VirB11-like_ATPase Typ 88.3 0.59 1.3E-05 40.0 3.9 33 64-96 88-120 (186)
326 TIGR02655 circ_KaiC circadian 88.2 0.91 2E-05 45.2 5.6 28 1-28 271-298 (484)
327 KOG0736 Peroxisome assembly fa 88.2 6.2 0.00013 40.9 11.2 63 1-87 713-775 (953)
328 cd03232 ABC_PDR_domain2 The pl 88.1 1.8 3.9E-05 37.2 6.8 45 69-115 119-169 (192)
329 cd02042 ParA ParA and ParB of 88.0 0.3 6.6E-06 37.2 1.7 26 2-28 9-34 (104)
330 TIGR01817 nifA Nif-specific re 88.0 5.1 0.00011 40.5 11.0 16 2-17 228-243 (534)
331 PF03215 Rad17: Rad17 cell cyc 87.8 2.3 5E-05 42.6 8.2 53 122-175 204-262 (519)
332 TIGR03324 alt_F1F0_F1_al alter 87.8 1.9 4.1E-05 42.6 7.4 79 2-87 171-265 (497)
333 cd02036 MinD Bacterial cell di 87.8 0.43 9.3E-06 40.2 2.7 20 1-20 8-27 (179)
334 PTZ00035 Rad51 protein; Provis 87.7 1 2.2E-05 42.6 5.3 14 2-15 127-140 (337)
335 TIGR02902 spore_lonB ATP-depen 87.6 2.2 4.7E-05 43.1 7.9 23 123-145 255-277 (531)
336 cd01124 KaiC KaiC is a circadi 87.5 0.94 2E-05 38.4 4.7 28 1-28 7-34 (187)
337 PRK09302 circadian clock prote 87.5 0.83 1.8E-05 45.8 4.9 27 2-28 40-67 (509)
338 cd00267 ABC_ATPase ABC (ATP-bi 87.5 1.1 2.3E-05 37.1 4.8 106 2-119 34-145 (157)
339 TIGR03496 FliI_clade1 flagella 87.5 1.8 3.9E-05 42.0 7.0 17 2-18 146-162 (411)
340 PF13245 AAA_19: Part of AAA d 87.4 1.1 2.4E-05 32.2 4.2 28 1-28 18-48 (76)
341 cd00227 CPT Chloramphenicol (C 87.4 0.4 8.7E-06 40.6 2.2 18 1-18 10-27 (175)
342 cd03281 ABC_MSH5_euk MutS5 hom 87.4 0.52 1.1E-05 41.4 3.0 47 74-120 106-160 (213)
343 TIGR00064 ftsY signal recognit 87.3 1.9 4.2E-05 39.4 6.7 20 1-20 80-99 (272)
344 KOG0730 AAA+-type ATPase [Post 87.3 6.1 0.00013 40.1 10.5 139 1-167 226-384 (693)
345 COG1149 MinD superfamily P-loo 87.1 0.43 9.4E-06 42.9 2.3 32 2-33 11-42 (284)
346 PF03796 DnaB_C: DnaB-like hel 87.1 1.4 3.1E-05 39.8 5.8 46 2-54 28-74 (259)
347 PRK06936 type III secretion sy 87.1 1.9 4E-05 42.1 6.8 17 2-18 171-187 (439)
348 PRK06217 hypothetical protein; 87.0 0.42 9E-06 40.8 2.1 17 1-17 9-25 (183)
349 PRK13233 nifH nitrogenase redu 87.0 0.47 1E-05 43.4 2.6 18 2-19 11-28 (275)
350 PLN03186 DNA repair protein RA 86.9 0.9 1.9E-05 42.9 4.4 15 1-15 131-145 (342)
351 cd03282 ABC_MSH4_euk MutS4 hom 86.8 0.78 1.7E-05 40.0 3.8 45 74-120 106-157 (204)
352 PRK09281 F0F1 ATP synthase sub 86.7 1.9 4.1E-05 42.9 6.8 14 74-87 252-265 (502)
353 COG1157 FliI Flagellar biosynt 86.7 1.8 4E-05 41.4 6.3 79 2-86 172-263 (441)
354 cd02021 GntK Gluconate kinase 86.7 0.43 9.3E-06 39.1 2.0 16 1-16 7-22 (150)
355 PF00437 T2SE: Type II/IV secr 86.6 1.2 2.5E-05 40.6 5.0 94 2-114 136-232 (270)
356 TIGR00962 atpA proton transloc 86.6 1.9 4.2E-05 42.9 6.7 14 74-87 251-264 (501)
357 PRK13543 cytochrome c biogenes 86.6 5.1 0.00011 35.0 8.9 50 69-120 148-203 (214)
358 cd01136 ATPase_flagellum-secre 86.5 1.5 3.3E-05 41.0 5.7 17 2-18 78-94 (326)
359 PF06564 YhjQ: YhjQ protein; 86.5 0.75 1.6E-05 41.1 3.5 27 2-28 11-37 (243)
360 PF02367 UPF0079: Uncharacteri 86.4 0.44 9.4E-06 37.8 1.7 15 3-17 25-39 (123)
361 COG0467 RAD55 RecA-superfamily 86.4 1.1 2.3E-05 40.7 4.6 27 2-28 32-58 (260)
362 cd03111 CpaE_like This protein 86.3 0.68 1.5E-05 35.6 2.8 29 2-30 9-37 (106)
363 PF01202 SKI: Shikimate kinase 86.2 0.47 1E-05 39.4 2.0 20 2-21 1-20 (158)
364 PRK06696 uridine kinase; Valid 86.1 0.43 9.3E-06 42.2 1.8 19 1-19 30-48 (223)
365 PRK08927 fliI flagellum-specif 86.1 2.1 4.5E-05 41.8 6.5 17 2-18 167-183 (442)
366 TIGR00455 apsK adenylylsulfate 86.1 2.2 4.7E-05 36.3 6.1 18 1-18 26-43 (184)
367 PRK08149 ATP synthase SpaL; Va 86.0 1.1 2.5E-05 43.5 4.8 78 2-87 160-252 (428)
368 PRK13849 putative crown gall t 86.0 0.6 1.3E-05 41.6 2.7 28 2-30 11-38 (231)
369 PRK05703 flhF flagellar biosyn 86.0 2.5 5.4E-05 41.3 7.2 18 1-18 229-246 (424)
370 cd00464 SK Shikimate kinase (S 86.0 0.53 1.1E-05 38.6 2.2 17 1-17 7-23 (154)
371 PF09848 DUF2075: Uncharacteri 86.0 2 4.4E-05 40.8 6.5 28 1-28 9-38 (352)
372 TIGR02974 phageshock_pspF psp 86.0 8.8 0.00019 36.1 10.6 15 2-16 31-45 (329)
373 cd02025 PanK Pantothenate kina 86.0 2.6 5.6E-05 37.2 6.7 17 2-18 8-24 (220)
374 cd01134 V_A-ATPase_A V/A-type 85.9 2.3 5.1E-05 40.1 6.5 40 2-47 166-205 (369)
375 cd03233 ABC_PDR_domain1 The pl 85.9 4.6 0.0001 34.9 8.2 17 2-18 42-58 (202)
376 KOG2004 Mitochondrial ATP-depe 85.9 1.3 2.7E-05 45.3 5.0 21 1-21 446-466 (906)
377 COG1428 Deoxynucleoside kinase 85.9 0.48 1E-05 41.0 1.9 18 1-18 12-29 (216)
378 PRK12723 flagellar biosynthesi 85.8 3.3 7.2E-05 39.9 7.7 17 2-18 183-199 (388)
379 PTZ00185 ATPase alpha subunit; 85.8 3.3 7.1E-05 41.2 7.7 14 74-87 287-300 (574)
380 cd03217 ABC_FeS_Assembly ABC-t 85.8 4.2 9.2E-05 35.1 7.9 49 68-118 114-168 (200)
381 PRK13343 F0F1 ATP synthase sub 85.8 2.1 4.5E-05 42.5 6.5 14 74-87 252-265 (502)
382 PRK14526 adenylate kinase; Pro 85.7 1.8 3.9E-05 38.0 5.5 17 1-17 8-24 (211)
383 PRK13975 thymidylate kinase; P 85.7 0.51 1.1E-05 40.6 2.1 19 1-19 10-28 (196)
384 PRK06793 fliI flagellum-specif 85.7 3.9 8.4E-05 39.9 8.1 44 74-119 244-291 (432)
385 COG0378 HypB Ni2+-binding GTPa 85.6 0.91 2E-05 38.9 3.3 29 2-30 22-50 (202)
386 PRK06547 hypothetical protein; 85.6 0.52 1.1E-05 39.9 1.9 17 1-17 23-39 (172)
387 PRK13231 nitrogenase reductase 85.6 0.5 1.1E-05 42.9 2.0 27 2-30 11-37 (264)
388 KOG0728 26S proteasome regulat 85.6 13 0.00029 33.3 10.6 116 1-144 189-331 (404)
389 TIGR01281 DPOR_bchL light-inde 85.5 0.65 1.4E-05 42.2 2.7 17 2-18 9-25 (268)
390 PF12775 AAA_7: P-loop contain 85.5 0.48 1E-05 43.3 1.8 17 1-17 41-57 (272)
391 PF08303 tRNA_lig_kinase: tRNA 85.5 0.48 1E-05 39.4 1.6 16 2-17 8-23 (168)
392 PRK13946 shikimate kinase; Pro 85.5 0.57 1.2E-05 40.0 2.2 18 1-18 18-35 (184)
393 TIGR01041 ATP_syn_B_arch ATP s 85.4 1.7 3.6E-05 42.8 5.6 16 2-17 150-165 (458)
394 PRK13949 shikimate kinase; Pro 85.4 0.58 1.2E-05 39.5 2.2 18 1-18 9-26 (169)
395 PF03266 NTPase_1: NTPase; In 85.3 0.49 1.1E-05 39.9 1.7 18 2-19 8-25 (168)
396 COG0572 Udk Uridine kinase [Nu 85.3 0.61 1.3E-05 40.8 2.3 19 2-20 17-35 (218)
397 PRK00889 adenylylsulfate kinas 85.2 0.7 1.5E-05 39.0 2.6 19 1-19 12-30 (175)
398 PRK13948 shikimate kinase; Pro 85.2 0.6 1.3E-05 39.9 2.2 19 1-19 18-36 (182)
399 PRK10037 cell division protein 85.1 0.69 1.5E-05 41.6 2.7 28 2-30 11-38 (250)
400 TIGR03498 FliI_clade3 flagella 85.1 2.1 4.5E-05 41.6 6.0 17 2-18 149-165 (418)
401 cd01983 Fer4_NifH The Fer4_Nif 85.0 0.53 1.1E-05 34.7 1.6 18 2-19 8-25 (99)
402 TIGR01969 minD_arch cell divis 85.0 0.69 1.5E-05 41.4 2.6 18 2-19 10-27 (251)
403 PRK11545 gntK gluconate kinase 85.0 0.6 1.3E-05 39.1 2.1 17 1-17 3-19 (163)
404 cd02028 UMPK_like Uridine mono 85.0 0.77 1.7E-05 39.1 2.8 18 2-19 8-25 (179)
405 PRK05973 replicative DNA helic 84.9 1.4 3E-05 39.3 4.4 27 2-28 73-99 (237)
406 PRK04040 adenylate kinase; Pro 84.8 0.59 1.3E-05 40.1 2.0 18 1-18 10-27 (188)
407 smart00487 DEXDc DEAD-like hel 84.8 1.6 3.5E-05 36.7 4.7 19 2-20 33-52 (201)
408 PF07088 GvpD: GvpD gas vesicl 84.8 1 2.3E-05 42.8 3.6 23 1-23 18-40 (484)
409 COG2401 ABC-type ATPase fused 84.8 1 2.2E-05 43.2 3.5 58 66-125 515-579 (593)
410 PRK03846 adenylylsulfate kinas 84.7 0.81 1.8E-05 39.6 2.9 20 1-20 32-51 (198)
411 PRK13833 conjugal transfer pro 84.7 2.2 4.8E-05 39.9 5.9 82 2-96 153-235 (323)
412 PF03029 ATP_bind_1: Conserved 84.7 0.89 1.9E-05 40.7 3.2 20 1-20 4-23 (238)
413 cd02040 NifH NifH gene encodes 84.7 0.73 1.6E-05 41.8 2.6 18 2-19 10-27 (270)
414 cd03213 ABCG_EPDR ABCG transpo 84.6 4.2 9.1E-05 34.9 7.3 46 68-115 121-172 (194)
415 PRK03731 aroL shikimate kinase 84.6 0.66 1.4E-05 38.9 2.2 18 1-18 10-27 (171)
416 PRK07667 uridine kinase; Provi 84.6 0.86 1.9E-05 39.3 2.9 19 1-19 25-43 (193)
417 PRK05480 uridine/cytidine kina 84.6 0.61 1.3E-05 40.7 2.0 17 1-17 14-30 (209)
418 COG2842 Uncharacterized ATPase 84.6 3.8 8.2E-05 37.5 7.0 84 1-96 102-187 (297)
419 KOG0738 AAA+-type ATPase [Post 84.5 2.5 5.5E-05 40.1 6.0 21 1-21 253-273 (491)
420 PRK05595 replicative DNA helic 84.5 3.1 6.7E-05 40.9 7.1 43 2-52 210-254 (444)
421 PF02223 Thymidylate_kin: Thym 84.5 1.3 2.8E-05 37.7 4.0 22 1-22 4-25 (186)
422 TIGR02768 TraA_Ti Ti-type conj 84.4 2.4 5.2E-05 44.6 6.6 19 1-19 376-394 (744)
423 TIGR00665 DnaB replicative DNA 84.4 3.2 6.9E-05 40.7 7.1 43 2-51 204-247 (434)
424 cd02032 Bchl_like This family 84.3 0.77 1.7E-05 41.7 2.7 19 2-20 9-27 (267)
425 TIGR00235 udk uridine kinase. 84.3 0.62 1.3E-05 40.6 1.9 18 1-18 14-31 (207)
426 PRK07594 type III secretion sy 84.2 1.9 4.1E-05 42.0 5.3 17 2-18 164-180 (433)
427 TIGR01040 V-ATPase_V1_B V-type 84.1 2.2 4.7E-05 41.8 5.7 16 2-17 150-165 (466)
428 PRK12727 flagellar biosynthesi 84.1 2.6 5.7E-05 42.0 6.3 19 1-19 358-376 (559)
429 TIGR02322 phosphon_PhnN phosph 84.0 0.66 1.4E-05 39.2 2.0 18 1-18 9-26 (179)
430 PRK13230 nitrogenase reductase 83.8 0.82 1.8E-05 41.9 2.6 19 2-20 10-28 (279)
431 cd02020 CMPK Cytidine monophos 83.8 0.76 1.7E-05 37.2 2.2 17 1-17 7-23 (147)
432 cd02024 NRK1 Nicotinamide ribo 83.8 0.66 1.4E-05 39.8 1.8 16 2-17 8-23 (187)
433 PRK12726 flagellar biosynthesi 83.7 5.8 0.00013 38.0 8.2 17 2-18 215-231 (407)
434 PF14532 Sigma54_activ_2: Sigm 83.7 0.96 2.1E-05 36.5 2.7 39 76-114 69-110 (138)
435 PRK11608 pspF phage shock prot 83.5 18 0.00039 34.0 11.5 14 2-15 38-51 (326)
436 PRK13764 ATPase; Provisional 83.5 1.7 3.7E-05 44.2 4.8 77 2-94 266-342 (602)
437 cd03110 Fer4_NifH_child This p 83.5 0.7 1.5E-05 39.1 1.9 16 2-17 9-24 (179)
438 cd00071 GMPK Guanosine monopho 83.4 0.82 1.8E-05 37.0 2.2 20 1-20 7-26 (137)
439 COG0703 AroK Shikimate kinase 83.4 0.79 1.7E-05 38.5 2.1 21 1-21 10-30 (172)
440 PF02374 ArsA_ATPase: Anion-tr 83.4 0.69 1.5E-05 43.0 1.9 19 2-20 10-28 (305)
441 TIGR00150 HI0065_YjeE ATPase, 83.4 0.69 1.5E-05 37.3 1.7 16 2-17 31-46 (133)
442 PRK05057 aroK shikimate kinase 83.4 0.78 1.7E-05 38.8 2.1 18 1-18 12-29 (172)
443 KOG2383 Predicted ATPase [Gene 83.4 0.77 1.7E-05 43.6 2.2 48 64-114 181-233 (467)
444 PRK13894 conjugal transfer ATP 83.3 3.7 7.9E-05 38.5 6.7 32 64-95 207-238 (319)
445 COG1102 Cmk Cytidylate kinase 83.3 0.73 1.6E-05 38.2 1.8 18 1-18 8-25 (179)
446 PRK13185 chlL protochlorophyll 83.2 0.91 2E-05 41.3 2.6 28 2-30 11-38 (270)
447 PRK10646 ADP-binding protein; 83.2 0.7 1.5E-05 38.2 1.7 15 3-17 38-52 (153)
448 COG0125 Tmk Thymidylate kinase 83.2 1.7 3.6E-05 38.0 4.1 28 1-28 11-38 (208)
449 TIGR03371 cellulose_yhjQ cellu 83.0 0.98 2.1E-05 40.3 2.7 19 2-20 11-29 (246)
450 PF04548 AIG1: AIG1 family; I 83.0 7.9 0.00017 33.8 8.4 14 2-15 9-22 (212)
451 COG3265 GntK Gluconate kinase 82.9 0.84 1.8E-05 37.3 1.9 20 2-21 4-23 (161)
452 TIGR03497 FliI_clade2 flagella 82.9 3.5 7.6E-05 40.1 6.6 17 2-18 146-162 (413)
453 COG1061 SSL2 DNA or RNA helica 82.8 4.4 9.4E-05 39.9 7.4 24 2-28 64-87 (442)
454 COG0055 AtpD F0F1-type ATP syn 82.8 1.5 3.3E-05 41.3 3.8 95 2-100 156-269 (468)
455 PRK09099 type III secretion sy 82.8 3.1 6.8E-05 40.7 6.2 17 2-18 172-188 (441)
456 COG1485 Predicted ATPase [Gene 82.8 2.9 6.3E-05 39.2 5.6 90 3-112 75-169 (367)
457 smart00534 MUTSac ATPase domai 82.7 0.65 1.4E-05 39.7 1.4 52 68-120 68-128 (185)
458 PRK14532 adenylate kinase; Pro 82.7 0.82 1.8E-05 39.1 2.0 17 1-17 8-24 (188)
459 TIGR01360 aden_kin_iso1 adenyl 82.7 0.79 1.7E-05 38.9 1.9 17 1-17 11-27 (188)
460 TIGR02533 type_II_gspE general 82.7 3 6.5E-05 41.5 6.2 31 64-94 299-329 (486)
461 cd01672 TMPK Thymidine monopho 82.6 1.9 4E-05 36.8 4.3 19 1-19 8-26 (200)
462 cd03287 ABC_MSH3_euk MutS3 hom 82.5 0.67 1.5E-05 41.0 1.4 44 75-119 109-159 (222)
463 PRK04196 V-type ATP synthase s 82.4 3.9 8.5E-05 40.3 6.8 45 2-49 152-199 (460)
464 KOG3347 Predicted nucleotide k 82.4 0.81 1.8E-05 37.4 1.7 16 2-17 16-31 (176)
465 PRK09165 replicative DNA helic 82.3 4.1 9E-05 40.7 7.1 17 2-18 226-242 (497)
466 COG3910 Predicted ATPase [Gene 82.3 7 0.00015 33.5 7.2 63 63-129 134-202 (233)
467 TIGR01287 nifH nitrogenase iro 82.3 1 2.2E-05 41.1 2.6 18 2-19 9-26 (275)
468 KOG1051 Chaperone HSP104 and r 82.2 2.6 5.6E-05 44.7 5.7 73 1-88 599-672 (898)
469 TIGR02868 CydC thiol reductant 82.2 5.4 0.00012 40.2 8.0 15 1-15 369-383 (529)
470 PRK05022 anaerobic nitric oxid 82.2 18 0.00039 36.3 11.6 16 2-17 219-234 (509)
471 PRK14529 adenylate kinase; Pro 82.1 4.4 9.6E-05 35.8 6.4 84 1-94 8-95 (223)
472 COG0003 ArsA Predicted ATPase 82.1 1.3 2.9E-05 41.4 3.3 22 1-22 10-31 (322)
473 TIGR01968 minD_bact septum sit 82.1 1.1 2.3E-05 40.4 2.6 18 2-19 11-28 (261)
474 PRK13235 nifH nitrogenase redu 82.1 1.1 2.3E-05 41.0 2.7 18 2-19 10-27 (274)
475 PRK13232 nifH nitrogenase redu 82.0 1.1 2.3E-05 40.9 2.6 18 2-19 10-27 (273)
476 KOG0924 mRNA splicing factor A 81.9 4.8 0.0001 41.0 7.1 105 2-113 380-509 (1042)
477 TIGR03600 phage_DnaB phage rep 81.9 4.6 9.9E-05 39.4 7.1 43 2-52 203-247 (421)
478 cd02023 UMPK Uridine monophosp 81.9 0.89 1.9E-05 39.2 1.9 17 1-17 7-23 (198)
479 PRK12339 2-phosphoglycerate ki 81.8 0.92 2E-05 39.3 2.0 17 1-17 11-27 (197)
480 cd03285 ABC_MSH2_euk MutS2 hom 81.8 1.1 2.4E-05 39.6 2.5 45 74-119 107-158 (222)
481 PRK06761 hypothetical protein; 81.7 0.98 2.1E-05 41.4 2.2 20 1-20 11-30 (282)
482 COG0488 Uup ATPase components 81.7 5.2 0.00011 40.2 7.4 48 69-121 164-217 (530)
483 cd02117 NifH_like This family 81.5 0.84 1.8E-05 39.9 1.7 18 2-19 9-26 (212)
484 PRK14530 adenylate kinase; Pro 81.3 1 2.2E-05 39.5 2.1 17 1-17 11-27 (215)
485 TIGR01026 fliI_yscN ATPase Fli 81.2 3.7 8.1E-05 40.2 6.1 16 2-17 172-187 (440)
486 PF13086 AAA_11: AAA domain; P 81.1 2.3 5E-05 37.1 4.4 17 1-17 25-41 (236)
487 PRK10078 ribose 1,5-bisphospho 80.9 1.1 2.3E-05 38.4 2.0 17 1-17 10-26 (186)
488 PRK05688 fliI flagellum-specif 80.9 5.1 0.00011 39.3 6.8 15 2-16 177-191 (451)
489 COG0802 Predicted ATPase or ki 80.8 0.95 2.1E-05 37.0 1.6 15 3-17 35-49 (149)
490 TIGR03018 pepcterm_TyrKin exop 80.7 1.3 2.9E-05 38.5 2.6 18 2-19 45-62 (207)
491 KOG0734 AAA+-type ATPase conta 80.6 13 0.00029 37.0 9.4 17 1-17 345-361 (752)
492 PRK04182 cytidylate kinase; Pr 80.6 1.1 2.5E-05 37.6 2.1 18 1-18 8-25 (180)
493 PRK15453 phosphoribulokinase; 80.4 6.2 0.00013 36.2 6.8 17 2-18 14-30 (290)
494 TIGR01448 recD_rel helicase, p 80.4 5.9 0.00013 41.5 7.7 32 77-111 417-450 (720)
495 PRK08472 fliI flagellum-specif 80.4 2.1 4.5E-05 41.8 4.1 16 2-17 166-181 (434)
496 PRK08506 replicative DNA helic 80.4 5.9 0.00013 39.3 7.3 44 2-52 201-244 (472)
497 KOG1970 Checkpoint RAD17-RFC c 80.2 22 0.00048 35.6 10.8 56 121-177 257-316 (634)
498 PRK06820 type III secretion sy 80.1 4.7 0.0001 39.4 6.4 16 2-17 172-187 (440)
499 PRK07721 fliI flagellum-specif 80.1 3.7 8E-05 40.2 5.7 16 2-17 167-182 (438)
500 COG2274 SunT ABC-type bacterio 80.1 5.9 0.00013 41.3 7.5 46 68-116 619-671 (709)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-33 Score=287.31 Aligned_cols=214 Identities=23% Similarity=0.235 Sum_probs=184.4
Q ss_pred CCCCcHHHHHHHHHc--h-hccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc-cCccchhhhHHHHHHHhcCc
Q 040234 1 MGGLGKTTLARVVYD--L-ISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-NNIRNVYDGINMLRVRLRRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~--~-~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~k 76 (377)
|||+||||||+++++ . ++.+|+..+|++ ||+.+ +...++.+|+..++.... ....+.++.+..+.+.|.++
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk~f----~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~k 261 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSKEF----TTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGK 261 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEE-Ecccc----cHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccC
Confidence 899999999999999 3 889999999999 99988 999999999999876322 22234478889999999999
Q ss_pred eEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCC-CCCchhH
Q 040234 77 KVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDT-HKPLEEY 154 (377)
Q Consensus 77 ~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~ 154 (377)
|+||||||||+..+|+.+..++|....||+|++|||++.|+.. +++...++++.|+++|||+||.+.++.. ...++..
T Consensus 262 rfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i 341 (889)
T KOG4658|consen 262 RFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDI 341 (889)
T ss_pred ceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccH
Confidence 9999999999999999999999988889999999999999998 7778899999999999999999999876 4455668
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHhhhhchh-HHHHHHHHHhhccC-----chhHHHHHHHHHhhcccCCCCC
Q 040234 155 VELAESVVRICHCQKSTLNALMSVSYTVSHL-LLTLCLKLMQYMLC-----PFILFVYLLFFSVGLQNMPPSD 221 (377)
Q Consensus 155 ~~~~~~I~~~c~G~~lplal~~~~~~l~~~~-~~~~~~~L~~~~~~-----~~~~~~~~~~l~~Sy~~L~~~~ 221 (377)
+++|++++++|+| ||||+.++|+.+..+. ..+|....+..... +.....+..++.+||+.||+.-
T Consensus 342 ~~lak~v~~kC~G--LPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~l 412 (889)
T KOG4658|consen 342 EELAKEVAEKCGG--LPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEEL 412 (889)
T ss_pred HHHHHHHHHHhCC--hHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHH
Confidence 9999999999999 9999999999998765 44677775544222 2335689999999999999544
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=3.4e-32 Score=251.65 Aligned_cols=229 Identities=27% Similarity=0.338 Sum_probs=167.1
Q ss_pred CCCCcHHHHHHHHHch--hccccccceEEecchhhcccccCHHHHHHHHHHHHhhcccc--CccchhhhHHHHHHHhcCc
Q 040234 1 MGGLGKTTLARVVYDL--ISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN--NIRNVYDGINMLRVRLRRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~--~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~k 76 (377)
|||+||||||.+++++ ++++|+..+|+. +++.. +...++..++.++...... ...+.++..+.+++.|.++
T Consensus 27 ~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~~~----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 101 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSKNP----SLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDK 101 (287)
T ss_dssp STTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-S----CCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCT
T ss_pred CCcCCcceeeeecccccccccccccccccc-ccccc----ccccccccccccccccccccccccccccccccchhhhccc
Confidence 7999999999999997 899998888887 66554 6688899999998766332 4567778899999999999
Q ss_pred eEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhhCCC-CCeeecCCCChhhhHHHHHHHhcCCC-CCchhH
Q 040234 77 KVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHPV-KKVYKLEALTYDEAFRLLCLKAFDTH-KPLEEY 154 (377)
Q Consensus 77 ~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~ 154 (377)
++||||||||+...|+.+...++....+++||||||+..++..... ...+++++|++++|++||.+.++... ...+..
T Consensus 102 ~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~ 181 (287)
T PF00931_consen 102 RCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDL 181 (287)
T ss_dssp SEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTS
T ss_pred cceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998888877776779999999999988776543 67899999999999999999997655 234445
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHhhhhch-hHHHHHHHHHhhccCc----hhHHHHHHHHHhhcccCCCCCcccCCCCC
Q 040234 155 VELAESVVRICHCQKSTLNALMSVSYTVSH-LLLTLCLKLMQYMLCP----FILFVYLLFFSVGLQNMPPSDKYGNMHSP 229 (377)
Q Consensus 155 ~~~~~~I~~~c~G~~lplal~~~~~~l~~~-~~~~~~~~L~~~~~~~----~~~~~~~~~l~~Sy~~L~~~~~~~~~~~~ 229 (377)
++.+++|++.|+| +|||+.++|+++..+ ...+|...+.+..... .....+..++.+||+.|++..
T Consensus 182 ~~~~~~i~~~c~g--lPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~-------- 251 (287)
T PF00931_consen 182 EDLAKEIVEKCGG--LPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDEL-------- 251 (287)
T ss_dssp CTHHHHHHHHTTT---HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCC--------
T ss_pred ccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccceechhcCCccH--------
Confidence 6789999999999 999999999998543 2334444443322221 134689999999999999976
Q ss_pred CCceEE--EecCC-CCCc
Q 040234 230 QREYSI--VVPGS-EIPE 244 (377)
Q Consensus 230 ~~~~~~--~~pg~-~iP~ 244 (377)
+..|.. +||.. .||.
T Consensus 252 ~~~f~~L~~f~~~~~i~~ 269 (287)
T PF00931_consen 252 RRCFLYLSIFPEGVPIPR 269 (287)
T ss_dssp HHHHHHGGGSGTTS-EEH
T ss_pred HHHHhhCcCCCCCceECH
Confidence 555544 56544 5553
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=2.4e-27 Score=255.41 Aligned_cols=212 Identities=27% Similarity=0.419 Sum_probs=170.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecc--hhh---cc-----cccCHHHHHHHHHHHHhhccccCccchhhhHHHHH
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADV--REK---CD-----KEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLR 70 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~--~~~---~~-----~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 70 (377)
|||+||||||+++|+++..+|+..+|+... +.. .. .......++.+++.++......... ....++
T Consensus 215 ~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~----~~~~~~ 290 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY----HLGAME 290 (1153)
T ss_pred CCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC----CHHHHH
Confidence 799999999999999999999988887531 111 00 0001234555666665443222111 135678
Q ss_pred HHhcCceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhhCCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 71 VRLRRKKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 71 ~~l~~k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+.++++|+||||||||+.++|+.+.....+.++|++||||||++.++......++|+++.|++++|++||.++||+...+
T Consensus 291 ~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~ 370 (1153)
T PLN03210 291 ERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP 370 (1153)
T ss_pred HHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC
Confidence 88999999999999999999999988777778899999999999998877777899999999999999999999987666
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHHhhhhchhHHHHHHHHHhhccCchhHHHHHHHHHhhcccCCCC
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSVSYTVSHLLLTLCLKLMQYMLCPFILFVYLLFFSVGLQNMPPS 220 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~Sy~~L~~~ 220 (377)
.+...+++++|+++||| +|||++++|++++.+...+|...+.+..... ...+.+++.+||+.|++.
T Consensus 371 ~~~~~~l~~~iv~~c~G--LPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 371 PDGFMELASEVALRAGN--LPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL--DGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred cHHHHHHHHHHHHHhCC--CcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc--cHHHHHHHHHhhhccCcc
Confidence 67788999999999999 9999999999999988888888887776533 246889999999999864
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.08 E-value=5.7e-10 Score=121.32 Aligned_cols=49 Identities=20% Similarity=0.494 Sum_probs=43.8
Q ss_pred EEEecCCCCCcccccccCCCceEE-EeCCCCCcCCCCeeeEEEEEEEecCCC
Q 040234 234 SIVVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNSKLVGYVVCCVFRVPKY 284 (377)
Q Consensus 234 ~~~~pg~~iP~w~~~~~~~g~s~~-~~l~~~~~~~~~~~Gf~~c~v~~~~~~ 284 (377)
.+.+||.++|.||.|++ .|++++ +.||++|+ ...++||++|+|+++.+.
T Consensus 957 ~~~l~g~evp~~f~hr~-~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~ 1006 (1153)
T PLN03210 957 QLILSGEEVPSYFTHRT-TGASLTNIPLLHISP-CQPFFRFRACAVVDSESF 1006 (1153)
T ss_pred EEECCCccCchhccCCc-ccceeeeeccCCccc-CCCccceEEEEEEecCcc
Confidence 35899999999999998 799998 99999998 578999999999987653
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.96 E-value=3.1e-08 Score=90.63 Aligned_cols=170 Identities=15% Similarity=0.062 Sum_probs=99.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHH-----hcC
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVR-----LRR 75 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-----l~~ 75 (377)
.+|+|||||++.+++.....-...+++. .... +..+++..++..++.... ..+.......+... ..+
T Consensus 51 ~~G~GKTtl~~~l~~~l~~~~~~~~~~~--~~~~----~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLDQERVVAAKLV--NTRV----DAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEeeee--CCCC----CHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999987653211112222 1111 556777777777643311 11212222333322 256
Q ss_pred ceEEEEEeCCCCh--hhhhHhh---CCCCCCCCCCeEEEEecchhHHhhC----------CCCCeeecCCCChhhhHHHH
Q 040234 76 KKVLVVIDDAAHP--DHLRRLV---GEPDWFGPGSRIIITTRNEHLLKLH----------PVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 76 k~~LLVLDdv~~~--~~~~~l~---~~l~~~~~gs~IIvTTR~~~v~~~~----------~~~~~~~l~~L~~~ea~~L~ 140 (377)
++.+||+||++.. ..++.+. ...........|++|.... ..... .....+++++|+.+|..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 7899999999874 3344433 2211112223455665432 11111 12346789999999999999
Q ss_pred HHHhcCCC--CCchhHHHHHHHHHHHhCCCCchhhHHHHHhhh
Q 040234 141 CLKAFDTH--KPLEEYVELAESVVRICHCQKSTLNALMSVSYT 181 (377)
Q Consensus 141 ~~~~~~~~--~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l 181 (377)
..++.... ....-.++..+.|++.++| .|..+..++..+
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G--~p~~i~~l~~~~ 242 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRG--IPRLINILCDRL 242 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCC--cccHHHHHHHHH
Confidence 87764322 1122345789999999999 999998777754
No 6
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.93 E-value=9e-10 Score=102.46 Aligned_cols=207 Identities=16% Similarity=0.100 Sum_probs=143.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|||||||++.++.. ++..|+.++|+++..+.. +...+...+...++-.. .+-+.....+...+.++|.++
T Consensus 22 ~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pit----D~~~v~~~~ag~~gl~~----~~g~~~~~~~~~~~~~rr~ll 92 (414)
T COG3903 22 AGGVGKTTLALQAAH-AASEYADGVAFVDLAPIT----DPALVFPTLAGALGLHV----QPGDSAVDTLVRRIGDRRALL 92 (414)
T ss_pred cCccceehhhhhhHh-HhhhcccceeeeeccccC----chhHhHHHHHhhccccc----ccchHHHHHHHHHHhhhhHHH
Confidence 489999999999999 999999999999887775 55555555554443332 122345567778889999999
Q ss_pred EEeCCCCh-hhhhHhhCCCCCCCCCCeEEEEecchhHHhhCCCCCeeecCCCChh-hhHHHHHHHhcCCCC---CchhHH
Q 040234 81 VIDDAAHP-DHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHPVKKVYKLEALTYD-EAFRLLCLKAFDTHK---PLEEYV 155 (377)
Q Consensus 81 VLDdv~~~-~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~~---~~~~~~ 155 (377)
|+||..+. ++...+...+..+++.-.|+.|+|+... ..+.....+++|+.. ++.++|...+..... -.....
T Consensus 93 vldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~ 169 (414)
T COG3903 93 VLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNA 169 (414)
T ss_pred HhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCCch
Confidence 99999873 3444444444444677789999997743 334566788888876 788998777643322 123335
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHhhhhchhHHHHHHHHH----hhccC----chhHHHHHHHHHhhcccCCCCC
Q 040234 156 ELAESVVRICHCQKSTLNALMSVSYTVSHLLLTLCLKLM----QYMLC----PFILFVYLLFFSVGLQNMPPSD 221 (377)
Q Consensus 156 ~~~~~I~~~c~G~~lplal~~~~~~l~~~~~~~~~~~L~----~~~~~----~~~~~~~~~~l~~Sy~~L~~~~ 221 (377)
..+.+|+++..| .|+++..+++..++-.......-|+ ..... ....+..++++++||.-|...+
T Consensus 170 a~v~~icr~ldg--~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 170 AAVAEICRRLDG--IPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred HHHHHHHHHhhc--chHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 678999999999 9999999999876644333222211 11111 1223467889999999988776
No 7
>PF05729 NACHT: NACHT domain
Probab=98.92 E-value=6.5e-09 Score=87.49 Aligned_cols=135 Identities=23% Similarity=0.324 Sum_probs=77.8
Q ss_pred CCCCcHHHHHHHHHchhcccc------ccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHH-h
Q 040234 1 MGGLGKTTLARVVYDLISHEF------DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVR-L 73 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f------~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l 73 (377)
.+|+||||+++.++.+..... ...+|+. .+...... ....+...+..+... ....... .+... .
T Consensus 8 ~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~l~~~~~~----~~~~~~~---~~~~~~~ 78 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSN-NSRSLADLLFDQLPE----SIAPIEE---LLQELLE 78 (166)
T ss_pred CCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhcc-ccchHHHHHHHhhcc----chhhhHH---HHHHHHH
Confidence 379999999999998554443 2333433 44443211 111233333333211 1111111 22222 2
Q ss_pred cCceEEEEEeCCCChhh---------hhHhhC-CCCC-CCCCCeEEEEecchhH---HhhCCCCCeeecCCCChhhhHHH
Q 040234 74 RRKKVLVVIDDAAHPDH---------LRRLVG-EPDW-FGPGSRIIITTRNEHL---LKLHPVKKVYKLEALTYDEAFRL 139 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~~~---------~~~l~~-~l~~-~~~gs~IIvTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L 139 (377)
..+++|||||++++... +..++. .+.. ..++.++|||+|.... .........+++++|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 56899999999976321 222221 1111 2568999999998765 33345556899999999999999
Q ss_pred HHHHh
Q 040234 140 LCLKA 144 (377)
Q Consensus 140 ~~~~~ 144 (377)
+.++.
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 97765
No 8
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=6e-08 Score=103.74 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=101.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccC---c---------cchhhhHHH
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNN---I---------RNVYDGINM 68 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~---~---------~~~~~~~~~ 68 (377)
++|.|||||+.++.++. +.++|+. +..... +.......++..+....... . .+.......
T Consensus 40 paG~GKTtl~~~~~~~~----~~~~w~~-l~~~d~---~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 40 PAGYGKTTLISQWAAGK----NNLGWYS-LDESDN---QPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CCCCCHHHHHHHHHHhC----CCeEEEe-cCcccC---CHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 58999999999988632 3578886 543321 55566667776664221110 0 111122223
Q ss_pred HHHHhc--CceEEEEEeCCCChh------hhhHhhCCCCCCCCCCeEEEEecchhHHh--hC-CCCCeeecC----CCCh
Q 040234 69 LRVRLR--RKKVLVVIDDAAHPD------HLRRLVGEPDWFGPGSRIIITTRNEHLLK--LH-PVKKVYKLE----ALTY 133 (377)
Q Consensus 69 l~~~l~--~k~~LLVLDdv~~~~------~~~~l~~~l~~~~~gs~IIvTTR~~~v~~--~~-~~~~~~~l~----~L~~ 133 (377)
+...+. +++++|||||+...+ .+..+.... .++.++|||||...-.. .. ......+++ +|+.
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~ 188 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDH 188 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCH
Confidence 333333 679999999986532 333444332 45668889999842111 11 112344555 8999
Q ss_pred hhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhhh
Q 040234 134 DEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYTV 182 (377)
Q Consensus 134 ~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~ 182 (377)
+|+.++|....+... ..+.+.+|.+.++| .|+++..++..+.
T Consensus 189 ~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~G--wp~~l~l~~~~~~ 230 (903)
T PRK04841 189 QEAQQFFDQRLSSPI-----EAAESSRLCDDVEG--WATALQLIALSAR 230 (903)
T ss_pred HHHHHHHHhccCCCC-----CHHHHHHHHHHhCC--hHHHHHHHHHHHh
Confidence 999999987764321 14567899999999 9999988776543
No 9
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.67 E-value=4.5e-07 Score=87.71 Aligned_cols=169 Identities=15% Similarity=0.101 Sum_probs=97.2
Q ss_pred CCCCcHHHHHHHHHchhccccc--cceEEecchhhcccccCHHHHHHHHHHHHhhccc-cCccchhhhHHHHHHHhc--C
Q 040234 1 MGGLGKTTLARVVYDLISHEFD--GSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-NNIRNVYDGINMLRVRLR--R 75 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~--~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~--~ 75 (377)
.+|+|||++++.+++++....+ ..+++. ..... +...++..++.++.+... ....+.++..+.+.+.+. +
T Consensus 63 ~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~~~----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQIDR----TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERD 137 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCcCC----CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999997765542 223333 33332 666888888888765211 122244556666666665 4
Q ss_pred ceEEEEEeCCCChh------hhhHhhCCCCCCCCCCe--EEEEecchhHHhhC-------CCCCeeecCCCChhhhHHHH
Q 040234 76 KKVLVVIDDAAHPD------HLRRLVGEPDWFGPGSR--IIITTRNEHLLKLH-------PVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 76 k~~LLVLDdv~~~~------~~~~l~~~l~~~~~gs~--IIvTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~L~ 140 (377)
++.+||||+++... .+..+...... .++++ +|.++....+.... -....+.+++++.++..+++
T Consensus 138 ~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il 216 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDIL 216 (394)
T ss_pred CEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHH
Confidence 57899999997632 34444332221 12333 56666554332221 11346789999999999999
Q ss_pred HHHhcCC---CCCch-hHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 141 CLKAFDT---HKPLE-EYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 141 ~~~~~~~---~~~~~-~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
..++... ....+ ..+.+++......|. .+.|+.++
T Consensus 217 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd--~r~a~~ll 255 (394)
T PRK00411 217 KDRVEEGFYPGVVDDEVLDLIADLTAREHGD--ARVAIDLL 255 (394)
T ss_pred HHHHHhhcccCCCCHhHHHHHHHHHHHhcCc--HHHHHHHH
Confidence 8876322 11122 222223333333455 77776554
No 10
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.6e-06 Score=80.79 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=110.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+||||||+.++.....+|... ..+.. +++++... ++.. -+....+++.+|
T Consensus 56 PPG~GKTTlA~liA~~~~~~f~~~---sAv~~------gvkdlr~i-~e~a-----------------~~~~~~gr~tiL 108 (436)
T COG2256 56 PPGTGKTTLARLIAGTTNAAFEAL---SAVTS------GVKDLREI-IEEA-----------------RKNRLLGRRTIL 108 (436)
T ss_pred CCCCCHHHHHHHHHHhhCCceEEe---ccccc------cHHHHHHH-HHHH-----------------HHHHhcCCceEE
Confidence 489999999999999777776431 11111 33333222 2211 012235889999
Q ss_pred EEeCCC--ChhhhhHhhCCCCCCCCCCeEEE--EecchhHH---hhCCCCCeeecCCCChhhhHHHHHHHhcCCCCCc--
Q 040234 81 VIDDAA--HPDHLRRLVGEPDWFGPGSRIII--TTRNEHLL---KLHPVKKVYKLEALTYDEAFRLLCLKAFDTHKPL-- 151 (377)
Q Consensus 81 VLDdv~--~~~~~~~l~~~l~~~~~gs~IIv--TTR~~~v~---~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~-- 151 (377)
.+|.|- +..|-+.|++.+ ..|.-|+| ||.++... ...+...++.+++|+.++-.+++.+.+.......
T Consensus 109 flDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~ 185 (436)
T COG2256 109 FLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGG 185 (436)
T ss_pred EEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCc
Confidence 999995 456677777765 45665665 67776431 1124578999999999999999988553222211
Q ss_pred ---hhHHHHHHHHHHHhCCCCchhhHHHH---Hhhhhch---hHHHHHHHH----HhhccCchhHHHHHHHHHhhcccCC
Q 040234 152 ---EEYVELAESVVRICHCQKSTLNALMS---VSYTVSH---LLLTLCLKL----MQYMLCPFILFVYLLFFSVGLQNMP 218 (377)
Q Consensus 152 ---~~~~~~~~~I~~~c~G~~lplal~~~---~~~l~~~---~~~~~~~~L----~~~~~~~~~~~~~~~~l~~Sy~~L~ 218 (377)
.-.+++.+-|++.++| +.-.++..+ ....... ........+ ..+....+..+.+..++..|.+.-+
T Consensus 186 ~~~~i~~~a~~~l~~~s~G-D~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD 264 (436)
T COG2256 186 QIIVLDEEALDYLVRLSNG-DARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSD 264 (436)
T ss_pred ccccCCHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCC
Confidence 1234567788888888 233333222 1111111 112222222 2233444556778888888887766
Q ss_pred CCC
Q 040234 219 PSD 221 (377)
Q Consensus 219 ~~~ 221 (377)
+++
T Consensus 265 ~dA 267 (436)
T COG2256 265 PDA 267 (436)
T ss_pred cCH
Confidence 654
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.58 E-value=5.7e-07 Score=79.95 Aligned_cols=170 Identities=19% Similarity=0.135 Sum_probs=80.7
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHH------HHHHHHHHhhcccc---------Cccchhhh
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISL------QKQLLSDLLKLADN---------NIRNVYDG 65 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~------~~~i~~~l~~~~~~---------~~~~~~~~ 65 (377)
..|+|||+|++++.+..++.-...+|+......... ....+ ...+...+...... ........
T Consensus 28 ~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (234)
T PF01637_consen 28 PRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSA 105 (234)
T ss_dssp STTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--
T ss_pred CCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHH
Confidence 369999999999999775543344555422221100 11111 11111222111000 01122223
Q ss_pred HHHHHHHhc--CceEEEEEeCCCChh-----------hhhHhhCCCCCCCCCCeEEEEecchhHHhh--------CCCCC
Q 040234 66 INMLRVRLR--RKKVLVVIDDAAHPD-----------HLRRLVGEPDWFGPGSRIIITTRNEHLLKL--------HPVKK 124 (377)
Q Consensus 66 ~~~l~~~l~--~k~~LLVLDdv~~~~-----------~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~--------~~~~~ 124 (377)
...+.+.+. +++.+||+|++.... .+..+........+. .+|+++....+... .....
T Consensus 106 l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~ 184 (234)
T PF01637_consen 106 LERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV-SIVITGSSDSLMEEFLDDKSPLFGRFS 184 (234)
T ss_dssp HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE-EEEEEESSHHHHHHTT-TTSTTTT---
T ss_pred HHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc-eEEEECCchHHHHHhhcccCccccccc
Confidence 333333343 345999999986544 122233222222333 44455444444332 13345
Q ss_pred eeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHH
Q 040234 125 VYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALM 176 (377)
Q Consensus 125 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~ 176 (377)
.+.+++|+.+++++++....... ...+...+..++|...+|| .|..|..
T Consensus 185 ~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG--~P~~l~~ 233 (234)
T PF01637_consen 185 HIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGG--NPRYLQE 233 (234)
T ss_dssp EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT---HHHHHH
T ss_pred eEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCC--CHHHHhc
Confidence 59999999999999999876433 1112235677999999999 9988753
No 12
>PRK06893 DNA replication initiation factor; Validated
Probab=98.58 E-value=4.9e-07 Score=80.59 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=86.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++++...+.....|+. +... ...... +.+.+. +.-+|
T Consensus 47 ~~G~GKThL~~ai~~~~~~~~~~~~y~~-~~~~-------~~~~~~----------------------~~~~~~-~~dlL 95 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHYLLNQRTAIYIP-LSKS-------QYFSPA----------------------VLENLE-QQDLV 95 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEee-HHHh-------hhhhHH----------------------HHhhcc-cCCEE
Confidence 3799999999999997655544555654 2110 000001 111112 23489
Q ss_pred EEeCCCCh---hhhh-HhhCCCCCC-CCCCeEEE-Eecc---------hhHHhhCCCCCeeecCCCChhhhHHHHHHHhc
Q 040234 81 VIDDAAHP---DHLR-RLVGEPDWF-GPGSRIII-TTRN---------EHLLKLHPVKKVYKLEALTYDEAFRLLCLKAF 145 (377)
Q Consensus 81 VLDdv~~~---~~~~-~l~~~l~~~-~~gs~IIv-TTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 145 (377)
+|||++.. .+|+ .+...+... ..+..+|| |++. +.+..++.....+++++++.++.++++.+.+.
T Consensus 96 ilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 96 CLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred EEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 99999862 3333 222212111 23555544 5543 35555556667899999999999999998886
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 146 DTHKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 146 ~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
...-. -.++...-|++.++| -.-++..+-.
T Consensus 176 ~~~l~--l~~~v~~~L~~~~~~--d~r~l~~~l~ 205 (229)
T PRK06893 176 QRGIE--LSDEVANFLLKRLDR--DMHTLFDALD 205 (229)
T ss_pred HcCCC--CCHHHHHHHHHhccC--CHHHHHHHHH
Confidence 43322 225678899999998 6665554444
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.49 E-value=5.4e-06 Score=79.31 Aligned_cols=166 Identities=11% Similarity=0.057 Sum_probs=93.0
Q ss_pred CCCCcHHHHHHHHHchhccccc------cceEEecchhhcccccCHHHHHHHHHHHHhh--cc-ccCccchhhhHHHHHH
Q 040234 1 MGGLGKTTLARVVYDLISHEFD------GSSFLADVREKCDKEGSVISLQKQLLSDLLK--LA-DNNIRNVYDGINMLRV 71 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~------~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~--~~-~~~~~~~~~~~~~l~~ 71 (377)
++|+|||++++.+++++.+..+ ..+++. ..... +...++..++.++.. .. +....+..+..+.+.+
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~~~~----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQILD----TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYK 122 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCCCC----CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 4799999999999986643322 123444 33332 566788888888742 11 1111223344455555
Q ss_pred Hhc--CceEEEEEeCCCChh-----hhhHhhCCC-CCCC--CCCeEEEEecchhHHhhC------C-CCCeeecCCCChh
Q 040234 72 RLR--RKKVLVVIDDAAHPD-----HLRRLVGEP-DWFG--PGSRIIITTRNEHLLKLH------P-VKKVYKLEALTYD 134 (377)
Q Consensus 72 ~l~--~k~~LLVLDdv~~~~-----~~~~l~~~l-~~~~--~gs~IIvTTR~~~v~~~~------~-~~~~~~l~~L~~~ 134 (377)
.+. +++.+||||+++... .+..+.... .... ....+|.+|........+ . ....+.+++++.+
T Consensus 123 ~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~ 202 (365)
T TIGR02928 123 ELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAE 202 (365)
T ss_pred HHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHH
Confidence 553 568899999998751 123332220 0111 223455555443322111 1 1256889999999
Q ss_pred hhHHHHHHHhcC---CCCCchhHHHHHHHHHHHhCCCCchhh
Q 040234 135 EAFRLLCLKAFD---THKPLEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 135 ea~~L~~~~~~~---~~~~~~~~~~~~~~I~~~c~G~~lpla 173 (377)
+..+++..++.. ...-.++..+.+.+++...+| .+-.
T Consensus 203 e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G--d~R~ 242 (365)
T TIGR02928 203 ELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG--DARK 242 (365)
T ss_pred HHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC--CHHH
Confidence 999999988741 111233334455667777777 6543
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.40 E-value=1.1e-06 Score=81.91 Aligned_cols=160 Identities=19% Similarity=0.085 Sum_probs=91.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccc----hhhhHHHHHHHhcCc
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRN----VYDGINMLRVRLRRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~~l~~~l~~k 76 (377)
++|+|||+||+.++++....+. +....... .. ..+...+..+....-.-.++ .....+.+...+.+.
T Consensus 38 p~G~GKT~la~~ia~~~~~~~~----~~~~~~~~----~~-~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~ 108 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVNLK----ITSGPALE----KP-GDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDF 108 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCCEE----Eeccchhc----Cc-hhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhh
Confidence 4799999999999997654321 11111111 11 12222233322111000000 112345566777777
Q ss_pred eEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhhC--CCCCeeecCCCChhhhHHHHHHHhcCCCCCchhH
Q 040234 77 KVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKLH--PVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEY 154 (377)
Q Consensus 77 ~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 154 (377)
+..+|+|+..+..++.... .+.+-|.+||+...+.... .....+++++++.++..+++.+.+..... .-.
T Consensus 109 ~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~ 180 (305)
T TIGR00635 109 RLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIE 180 (305)
T ss_pred heeeeeccCccccceeecC------CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcC
Confidence 7778888776665554322 2244566677765443321 12456789999999999999988754322 222
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 155 VELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 155 ~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
++.+..|++.|+| .|-.+..+..
T Consensus 181 ~~al~~ia~~~~G--~pR~~~~ll~ 203 (305)
T TIGR00635 181 PEAALEIARRSRG--TPRIANRLLR 203 (305)
T ss_pred HHHHHHHHHHhCC--CcchHHHHHH
Confidence 5677899999999 9966544443
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.32 E-value=5.7e-06 Score=77.97 Aligned_cols=160 Identities=19% Similarity=0.059 Sum_probs=89.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccch----hhhHHHHHHHhcCc
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNV----YDGINMLRVRLRRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~l~~~l~~k 76 (377)
++|+|||+||+.++++....+. +.... .. .....+..++..+....-.-.++. ....+.+...+.+.
T Consensus 59 ppG~GKT~la~~ia~~l~~~~~----~~~~~-~~----~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~ 129 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGVNIR----ITSGP-AL----EKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDF 129 (328)
T ss_pred CCCccHHHHHHHHHHHhCCCeE----EEecc-cc----cChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhc
Confidence 4799999999999997654321 11111 11 111222333333221110000010 12334455666666
Q ss_pred eEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhhC--CCCCeeecCCCChhhhHHHHHHHhcCCCCCchhH
Q 040234 77 KVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKLH--PVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEY 154 (377)
Q Consensus 77 ~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 154 (377)
+..+|+|+..+...+.... .+.+-|..|+|...+...+ .....++++++++++..+++.+.+...... -.
T Consensus 130 ~~~~~l~~~~~~~~~~~~l------~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~ 201 (328)
T PRK00080 130 RLDIMIGKGPAARSIRLDL------PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--ID 201 (328)
T ss_pred ceeeeeccCccccceeecC------CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cC
Confidence 7777777765544333211 1234566677754432221 123568999999999999999887543322 23
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 155 VELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 155 ~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
++.+..|++.|+| .|-.+..+..
T Consensus 202 ~~~~~~ia~~~~G--~pR~a~~~l~ 224 (328)
T PRK00080 202 EEGALEIARRSRG--TPRIANRLLR 224 (328)
T ss_pred HHHHHHHHHHcCC--CchHHHHHHH
Confidence 5678999999999 9965544443
No 16
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.30 E-value=7e-06 Score=72.95 Aligned_cols=144 Identities=18% Similarity=0.164 Sum_probs=82.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++++..+.....+++. +.... .-...+ ...+.. .-+|
T Consensus 46 ~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~-------~~~~~~----------------------~~~~~~-~~lL 94 (226)
T TIGR03420 46 ESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA-------QADPEV----------------------LEGLEQ-ADLV 94 (226)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH-------HhHHHH----------------------Hhhccc-CCEE
Confidence 3799999999999986654433334443 32221 000011 111122 2389
Q ss_pred EEeCCCChh---h-hhHhhCCCCC-CCCCCeEEEEecchh---------HHhhCCCCCeeecCCCChhhhHHHHHHHhcC
Q 040234 81 VIDDAAHPD---H-LRRLVGEPDW-FGPGSRIIITTRNEH---------LLKLHPVKKVYKLEALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 81 VLDdv~~~~---~-~~~l~~~l~~-~~~gs~IIvTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 146 (377)
||||++... . .+.+...+.. ...+..+|+||+... +.........+++.++++++...++...+..
T Consensus 95 vIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~ 174 (226)
T TIGR03420 95 CLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR 174 (226)
T ss_pred EEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH
Confidence 999997532 2 2223222111 023347888887532 2222333467899999999999998876532
Q ss_pred CCCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 147 THKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 147 ~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
... +-.++..+.|++.++| .+..+..+..
T Consensus 175 ~~~--~~~~~~l~~L~~~~~g--n~r~L~~~l~ 203 (226)
T TIGR03420 175 RGL--QLPDEVADYLLRHGSR--DMGSLMALLD 203 (226)
T ss_pred cCC--CCCHHHHHHHHHhccC--CHHHHHHHHH
Confidence 211 1224667888889999 8888775544
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.24 E-value=1.2e-05 Score=81.49 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=104.3
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCc------------cchhhhHHH
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNI------------RNVYDGINM 68 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~------------~~~~~~~~~ 68 (377)
++|.|||||+.+++... ..=..+.|+. +.+... ++.+....++.++....+... .+.......
T Consensus 45 PAGfGKttl~aq~~~~~-~~~~~v~Wls-lde~dn---dp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~ 119 (894)
T COG2909 45 PAGFGKTTLLAQWRELA-ADGAAVAWLS-LDESDN---DPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSS 119 (894)
T ss_pred CCCCcHHHHHHHHHHhc-CcccceeEee-cCCccC---CHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHH
Confidence 58999999999998833 3335678887 443321 778888888888753322111 122233444
Q ss_pred HHHHhc--CceEEEEEeCC---CCh---hhhhHhhCCCCCCCCCCeEEEEecchhH---HhhCCCCCeeecC----CCCh
Q 040234 69 LRVRLR--RKKVLVVIDDA---AHP---DHLRRLVGEPDWFGPGSRIIITTRNEHL---LKLHPVKKVYKLE----ALTY 133 (377)
Q Consensus 69 l~~~l~--~k~~LLVLDdv---~~~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v---~~~~~~~~~~~l~----~L~~ 133 (377)
+...+. .++.+|||||. .++ +.++.++... .++-.+|||||++.- +...-....++++ .++.
T Consensus 120 L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~ 196 (894)
T COG2909 120 LLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDT 196 (894)
T ss_pred HHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCCh
Confidence 444444 36899999995 343 3355555443 457789999998632 1111112333333 4889
Q ss_pred hhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhhh
Q 040234 134 DEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYTV 182 (377)
Q Consensus 134 ~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~ 182 (377)
+|+.++|....+..- ....++.|.+..+| -+-|+..++-.+.
T Consensus 197 eE~~~fl~~~~~l~L-----d~~~~~~L~~~teG--W~~al~L~aLa~~ 238 (894)
T COG2909 197 EEAAAFLNDRGSLPL-----DAADLKALYDRTEG--WAAALQLIALALR 238 (894)
T ss_pred HHHHHHHHHcCCCCC-----ChHHHHHHHhhccc--HHHHHHHHHHHcc
Confidence 999999987663322 24457788888888 8888776665544
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.24 E-value=1.2e-05 Score=78.13 Aligned_cols=145 Identities=23% Similarity=0.303 Sum_probs=82.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+||||||+.+++.....|. .+. .... .... ++.++..... ....+++.+|
T Consensus 44 ppGtGKTtLA~~ia~~~~~~~~---~l~---a~~~---~~~~-ir~ii~~~~~-----------------~~~~g~~~vL 96 (413)
T PRK13342 44 PPGTGKTTLARIIAGATDAPFE---ALS---AVTS---GVKD-LREVIEEARQ-----------------RRSAGRRTIL 96 (413)
T ss_pred CCCCCHHHHHHHHHHHhCCCEE---EEe---cccc---cHHH-HHHHHHHHHH-----------------hhhcCCceEE
Confidence 4799999999999987654432 111 1110 2111 1222221100 0114577899
Q ss_pred EEeCCCC--hhhhhHhhCCCCCCCCCCeEEE--Eecchh--HH-hhCCCCCeeecCCCChhhhHHHHHHHhcCCCCCc-h
Q 040234 81 VIDDAAH--PDHLRRLVGEPDWFGPGSRIII--TTRNEH--LL-KLHPVKKVYKLEALTYDEAFRLLCLKAFDTHKPL-E 152 (377)
Q Consensus 81 VLDdv~~--~~~~~~l~~~l~~~~~gs~IIv--TTR~~~--v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~-~ 152 (377)
+||+++. ..+.+.|+..+. .+..+++ ||.+.. +. ...+....+.+.+++.++..+++.+.+....... .
T Consensus 97 ~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~ 173 (413)
T PRK13342 97 FIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVE 173 (413)
T ss_pred EEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCC
Confidence 9999986 345556655543 2444444 344432 11 1113346789999999999999988653211111 2
Q ss_pred hHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 153 EYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 153 ~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
...+..+.|++.++| .+..+...
T Consensus 174 i~~~al~~l~~~s~G--d~R~aln~ 196 (413)
T PRK13342 174 LDDEALDALARLANG--DARRALNL 196 (413)
T ss_pred CCHHHHHHHHHhCCC--CHHHHHHH
Confidence 235667889999999 87665433
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.23 E-value=4.1e-06 Score=67.56 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=68.9
Q ss_pred CCCcHHHHHHHHHchhccc-----cccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCc
Q 040234 2 GGLGKTTLARVVYDLISHE-----FDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRK 76 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~-----f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 76 (377)
+|+|||+++.+++++.... -...+|+. +.... +...+...++.++...... ..+..+..+.+.+.+...
T Consensus 13 ~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~~l~~~ 86 (131)
T PF13401_consen 13 PGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPSSR----TPRDFAQEILEALGLPLKS-RQTSDELRSLLIDALDRR 86 (131)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHHHS----SHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCCCC----CHHHHHHHHHHHhCccccc-cCCHHHHHHHHHHHHHhc
Confidence 7999999999999965443 23344555 55554 7889999999998665332 345566667777777665
Q ss_pred e-EEEEEeCCCCh---hhhhHhhCCCCCCCCCCeEEEEecc
Q 040234 77 K-VLVVIDDAAHP---DHLRRLVGEPDWFGPGSRIIITTRN 113 (377)
Q Consensus 77 ~-~LLVLDdv~~~---~~~~~l~~~l~~~~~gs~IIvTTR~ 113 (377)
+ .+||||+++.. +.++.+..... ..+.++|+..+.
T Consensus 87 ~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 87 RVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp TEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred CCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4 59999999765 23444433222 556677777664
No 20
>PF13173 AAA_14: AAA domain
Probab=98.19 E-value=2.9e-06 Score=68.41 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=68.0
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
-|+|||||+++++++.. .-...+++. ..... . .. .. ..+ ..+.+.+....++.+|+
T Consensus 11 R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~-------~-~~-~~------------~~~-~~~~~~~~~~~~~~~i~ 66 (128)
T PF13173_consen 11 RGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR-------D-RR-LA------------DPD-LLEYFLELIKPGKKYIF 66 (128)
T ss_pred CCCCHHHHHHHHHHHhc-ccccceeec-cCCHH-------H-HH-Hh------------hhh-hHHHHHHhhccCCcEEE
Confidence 58999999999998665 222344443 33221 1 00 00 000 22334444444778999
Q ss_pred EeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhh-----C-CCCCeeecCCCChhh
Q 040234 82 IDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKL-----H-PVKKVYKLEALTYDE 135 (377)
Q Consensus 82 LDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~-----~-~~~~~~~l~~L~~~e 135 (377)
||++.....|......+.+..+..+|++|+........ . +....+++.||+-.|
T Consensus 67 iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 67 IDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred EehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 99998877777666665554567899999987765432 1 224567899998776
No 21
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=2.9e-05 Score=76.04 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=96.2
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|+|||+|++.+++.+....+ ..+.+. +..++...+...+.... ...+.+++.++. .-+|
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~~~~~~v~yv----------~~~~f~~~~~~~l~~~~--------~~~~~~~~~~~~-~dvL 210 (450)
T PRK14087 150 SGMGKTHLLKAAKNYIESNFSDLKVSYM----------SGDEFARKAVDILQKTH--------KEIEQFKNEICQ-NDVL 210 (450)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEE----------EHHHHHHHHHHHHHHhh--------hHHHHHHHHhcc-CCEE
Confidence 699999999999997654433 223232 44456666666553210 123344444443 3488
Q ss_pred EEeCCCCh---hh-hhHhhCCCCCC-CCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHhcC
Q 040234 81 VIDDAAHP---DH-LRRLVGEPDWF-GPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 81 VLDdv~~~---~~-~~~l~~~l~~~-~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 146 (377)
||||+... +. .+.|...+... ..+..||+|+... .+..++...-+.++++++.++-.+++.+++-.
T Consensus 211 iIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 211 IIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 89999542 11 12222211111 2345788887642 33334455677889999999999999988743
Q ss_pred CCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhh
Q 040234 147 THKPLEEYVELAESVVRICHCQKSTLNALMSVSYT 181 (377)
Q Consensus 147 ~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l 181 (377)
......-.++++.-|++.++| .+-.+..+...+
T Consensus 291 ~gl~~~l~~evl~~Ia~~~~g--d~R~L~gaL~~l 323 (450)
T PRK14087 291 QNIKQEVTEEAINFISNYYSD--DVRKIKGSVSRL 323 (450)
T ss_pred cCCCCCCCHHHHHHHHHccCC--CHHHHHHHHHHH
Confidence 221112336788999999999 888877665543
No 22
>PRK08727 hypothetical protein; Validated
Probab=98.17 E-value=1.8e-05 Score=70.80 Aligned_cols=133 Identities=18% Similarity=0.106 Sum_probs=78.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||.|++.+++...+.....+++. ..+ ....+.+. + +.+ .+.-+||
T Consensus 50 ~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~----------~~~~~~~~------------------~-~~l-~~~dlLi 98 (233)
T PRK08727 50 AGTGKTHLALALCAAAEQAGRSSAYLP-LQA----------AAGRLRDA------------------L-EAL-EGRSLVA 98 (233)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH----------hhhhHHHH------------------H-HHH-hcCCEEE
Confidence 699999999999987655544445544 211 11111110 0 111 1234899
Q ss_pred EeCCCCh---hhhh-HhhCCCCCC-CCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHhcCC
Q 040234 82 IDDAAHP---DHLR-RLVGEPDWF-GPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFDT 147 (377)
Q Consensus 82 LDdv~~~---~~~~-~l~~~l~~~-~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 147 (377)
|||+... ..+. .+...+... ..+..||+||+.. .+..++.....+++++++.++-.+++.+++...
T Consensus 99 IDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 99 LDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred EeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 9998642 1221 222211110 2356799999852 233333445689999999999999999877432
Q ss_pred CCCchhHHHHHHHHHHHhCC
Q 040234 148 HKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 148 ~~~~~~~~~~~~~I~~~c~G 167 (377)
. ..-.++...-|++.++|
T Consensus 179 ~--l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 179 G--LALDEAAIDWLLTHGER 196 (233)
T ss_pred C--CCCCHHHHHHHHHhCCC
Confidence 2 12225678889999988
No 23
>PRK09087 hypothetical protein; Validated
Probab=98.17 E-value=2.4e-05 Score=69.52 Aligned_cols=95 Identities=16% Similarity=0.080 Sum_probs=62.3
Q ss_pred EEEEeCCCC----hhhhhHhhCCCCCCCCCCeEEEEecc---------hhHHhhCCCCCeeecCCCChhhhHHHHHHHhc
Q 040234 79 LVVIDDAAH----PDHLRRLVGEPDWFGPGSRIIITTRN---------EHLLKLHPVKKVYKLEALTYDEAFRLLCLKAF 145 (377)
Q Consensus 79 LLVLDdv~~----~~~~~~l~~~l~~~~~gs~IIvTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 145 (377)
+|+|||+.. .+.+-.+...+. ..|..+|+|++. +.+..++....++++++++.++-.+++.+++.
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 788899954 223333322222 336679998873 33444456678899999999999999998884
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 146 DTHKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 146 ~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
...- .-.+++..-|++.+.| ..-++..+..
T Consensus 168 ~~~~--~l~~ev~~~La~~~~r--~~~~l~~~l~ 197 (226)
T PRK09087 168 DRQL--YVDPHVVYYLVSRMER--SLFAAQTIVD 197 (226)
T ss_pred HcCC--CCCHHHHHHHHHHhhh--hHHHHHHHHH
Confidence 4321 1225678888888888 6666654333
No 24
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=3.3e-05 Score=68.29 Aligned_cols=150 Identities=20% Similarity=0.200 Sum_probs=88.8
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|+|||.|.+.++++..+..+ .++.+. +..+....+...+.. ...+.++..++.- =+|
T Consensus 43 ~G~GKTHLL~Ai~~~~~~~~~~~~v~y~----------~~~~f~~~~~~~~~~----------~~~~~~~~~~~~~-DlL 101 (219)
T PF00308_consen 43 SGLGKTHLLQAIANEAQKQHPGKRVVYL----------SAEEFIREFADALRD----------GEIEEFKDRLRSA-DLL 101 (219)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTTS-EEEE----------EHHHHHHHHHHHHHT----------TSHHHHHHHHCTS-SEE
T ss_pred CCCCHHHHHHHHHHHHHhccccccceee----------cHHHHHHHHHHHHHc----------ccchhhhhhhhcC-CEE
Confidence 699999999999997766554 334333 344555555554422 1224455555543 478
Q ss_pred EEeCCCCh---hhhh----HhhCCCCCCCCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 81 VIDDAAHP---DHLR----RLVGEPDWFGPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 81 VLDdv~~~---~~~~----~l~~~l~~~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
+|||+... ..|+ .+...+. ..|.+||+|++.. ++..++...-++++++++.++-.+++.+++
T Consensus 102 ~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 102 IIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp EEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred EEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 89999652 2121 2222211 3466899999643 333444566789999999999999999888
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 145 FDTHKPLEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
....-. -.++++.-|++.+.+ ..-.+..+-
T Consensus 180 ~~~~~~--l~~~v~~~l~~~~~~--~~r~L~~~l 209 (219)
T PF00308_consen 180 KERGIE--LPEEVIEYLARRFRR--DVRELEGAL 209 (219)
T ss_dssp HHTT----S-HHHHHHHHHHTTS--SHHHHHHHH
T ss_pred HHhCCC--CcHHHHHHHHHhhcC--CHHHHHHHH
Confidence 543322 235778888888888 665555443
No 25
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=5.5e-05 Score=65.27 Aligned_cols=88 Identities=19% Similarity=0.152 Sum_probs=60.0
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+.+-++|+||++.. +..+.|+..+....+.+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g----i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G----I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C----C
Confidence 45668999999763 34556665555445566777776653 232222 23568999999999999988776 1 1
Q ss_pred chhHHHHHHHHHHHhCCCCchh
Q 040234 151 LEEYVELAESVVRICHCQKSTL 172 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpl 172 (377)
. ++.+..|++.+|| .|.
T Consensus 170 ~---~~~~~~i~~~~~g--~~r 186 (188)
T TIGR00678 170 S---EEAAELLLALAGG--SPG 186 (188)
T ss_pred C---HHHHHHHHHHcCC--Ccc
Confidence 1 4678899999999 764
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.0001 Score=70.33 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=62.7
Q ss_pred CceEEEEEeCCCChh--hhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHPD--HLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++... .++.++..+.......++|++|.+ ..+...+ +....+++.+++.++..+.+...+......
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 345699999998743 466666655543456666666654 3333322 335689999999999999888766432211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
-.++.++.|++.++| .|-.+
T Consensus 198 --i~~~al~~ia~~s~G--~~R~a 217 (363)
T PRK14961 198 --TDEYALKLIAYHAHG--SMRDA 217 (363)
T ss_pred --CCHHHHHHHHHHcCC--CHHHH
Confidence 124567889999999 77643
No 27
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=9.7e-05 Score=72.25 Aligned_cols=151 Identities=19% Similarity=0.177 Sum_probs=88.4
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
+|+|||+||+.+++.+.+..+ ..+.+. +..+++..+...+... + .+.+++.+..+.-+|
T Consensus 139 ~G~GKTHLl~ai~~~l~~~~~~~~v~yi----------~~~~f~~~~~~~~~~~------~----~~~f~~~~~~~~dvL 198 (440)
T PRK14088 139 VGLGKTHLLQSIGNYVVQNEPDLRVMYI----------TSEKFLNDLVDSMKEG------K----LNEFREKYRKKVDVL 198 (440)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEE----------EHHHHHHHHHHHHhcc------c----HHHHHHHHHhcCCEE
Confidence 799999999999998766554 334443 3334455555544211 1 123344444445689
Q ss_pred EEeCCCCh---h----hhhHhhCCCCCCCCCCeEEEEec-chh--------HHhhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 81 VIDDAAHP---D----HLRRLVGEPDWFGPGSRIIITTR-NEH--------LLKLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 81 VLDdv~~~---~----~~~~l~~~l~~~~~gs~IIvTTR-~~~--------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
+|||+... . .+-.+...+. ..+..||+||. .+. +..++....++++++.+.+.-.+++.+.+
T Consensus 199 lIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 199 LIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred EEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 99999742 1 1212211111 23456888875 221 22223445678999999999999998887
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 145 FDTHKPLEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
....-.. .++++.-|++.+.| .--.+..+-
T Consensus 277 ~~~~~~l--~~ev~~~Ia~~~~~--~~R~L~g~l 306 (440)
T PRK14088 277 EIEHGEL--PEEVLNFVAENVDD--NLRRLRGAI 306 (440)
T ss_pred HhcCCCC--CHHHHHHHHhcccc--CHHHHHHHH
Confidence 4322222 24677888888887 655544333
No 28
>PRK05642 DNA replication initiation factor; Validated
Probab=97.99 E-value=6.6e-05 Score=67.12 Aligned_cols=143 Identities=16% Similarity=0.188 Sum_probs=82.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||.|++.++++..+.-..++|+. . .++... ...+.+.+.+-. +||
T Consensus 54 ~G~GKTHLl~a~~~~~~~~~~~v~y~~-~----------~~~~~~-------------------~~~~~~~~~~~d-~Li 102 (234)
T PRK05642 54 DGVGRSHLLQAACLRFEQRGEPAVYLP-L----------AELLDR-------------------GPELLDNLEQYE-LVC 102 (234)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEee-H----------HHHHhh-------------------hHHHHHhhhhCC-EEE
Confidence 699999999999986654423344443 2 222111 011222222222 688
Q ss_pred EeCCCCh---hhhhH-hhCCCCCC-CCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHhcCC
Q 040234 82 IDDAAHP---DHLRR-LVGEPDWF-GPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFDT 147 (377)
Q Consensus 82 LDdv~~~---~~~~~-l~~~l~~~-~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 147 (377)
+||+... ..|+. +...+... ..|..+|+||+.. .+..++....++++++++.++-.+++..++...
T Consensus 103 iDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~ 182 (234)
T PRK05642 103 LDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR 182 (234)
T ss_pred EechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc
Confidence 9999532 23322 22222111 3466789988753 222223345778999999999999998666432
Q ss_pred CCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 148 HKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 148 ~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
.-. -.+++..-|++.+.| ..-.+..+-.
T Consensus 183 ~~~--l~~ev~~~L~~~~~~--d~r~l~~~l~ 210 (234)
T PRK05642 183 GLH--LTDEVGHFILTRGTR--SMSALFDLLE 210 (234)
T ss_pred CCC--CCHHHHHHHHHhcCC--CHHHHHHHHH
Confidence 211 225788899999999 6555543333
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=7.2e-05 Score=74.15 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEec-chhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTR-NEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|||+++.. +.++.|+..+..-.....+|++|. ...+...+ .....+++.+++.++..+.+.+.+-.....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999763 456666666554344555555554 33333222 335689999999999999998877433211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
..++.+..|++.++| .+--+
T Consensus 195 --i~~~Al~~ia~~s~G--dlR~a 214 (504)
T PRK14963 195 --AEPEALQLVARLADG--AMRDA 214 (504)
T ss_pred --CCHHHHHHHHHHcCC--CHHHH
Confidence 124677888888988 66544
No 30
>PLN03025 replication factor C subunit; Provisional
Probab=97.95 E-value=0.00012 Score=68.71 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=58.1
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|||+++.. ...+.|...+..-...+++|+++... .+...+ .....+++++++.++..+.+...+-...-.
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34669999999873 23333333222223456677666432 222211 224578999999999999988877432221
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
- .++....|++.++| ++..++
T Consensus 178 i--~~~~l~~i~~~~~g-DlR~al 198 (319)
T PLN03025 178 Y--VPEGLEAIIFTADG-DMRQAL 198 (319)
T ss_pred C--CHHHHHHHHHHcCC-CHHHHH
Confidence 1 24567889999998 344444
No 31
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.0002 Score=70.84 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEE-EEecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRII-ITTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~II-vTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++. ...++.|+..+..-.+.+.+| +||+.+.+...+ .....+++.+++.++..+.+...+......
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4567899999987 345777766555434555555 455555554433 345679999999999999998887433221
Q ss_pred chhHHHHHHHHHHHhCCCCchhh
Q 040234 151 LEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpla 173 (377)
...+.+..|++.++| .+--
T Consensus 207 --ie~eAL~~Ia~~s~G--slR~ 225 (507)
T PRK06645 207 --TDIEALRIIAYKSEG--SARD 225 (507)
T ss_pred --CCHHHHHHHHHHcCC--CHHH
Confidence 124566778888888 6543
No 32
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.93 E-value=0.00012 Score=69.07 Aligned_cols=95 Identities=19% Similarity=0.054 Sum_probs=57.8
Q ss_pred ceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCCc
Q 040234 76 KKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKPL 151 (377)
Q Consensus 76 k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 151 (377)
.+-+|||||++.. +....+...+......+++|+||... .+...+ .....+++.+++.++..+++.+.+......
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 3458999999753 22333333222223456787777543 222222 234678899999999999998876432221
Q ss_pred hhHHHHHHHHHHHhCCCCchhhH
Q 040234 152 EEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 152 ~~~~~~~~~I~~~c~G~~lplal 174 (377)
-..+.++.|++.++| .+-.+
T Consensus 204 -~~~~al~~l~~~~~g--dlr~l 223 (337)
T PRK12402 204 -YDDDGLELIAYYAGG--DLRKA 223 (337)
T ss_pred -CCHHHHHHHHHHcCC--CHHHH
Confidence 225678888999988 55444
No 33
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.93 E-value=0.00013 Score=65.32 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=81.3
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
+.|+|||+|++.+++.....-....++. +.... .... +..+.+ .. .-+|
T Consensus 53 p~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~-------~~~~------------------~~~~~~----~~-~dll 101 (235)
T PRK08084 53 REGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA-------WFVP------------------EVLEGM----EQ-LSLV 101 (235)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh-------hhhH------------------HHHHHh----hh-CCEE
Confidence 4799999999999986654422333433 22110 0000 111111 11 1389
Q ss_pred EEeCCCCh---hhhh----HhhCCCCCCCCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 81 VIDDAAHP---DHLR----RLVGEPDWFGPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 81 VLDdv~~~---~~~~----~l~~~l~~~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
+|||+... .+|+ .+...... ..+.++|+||+.. .+..++....++++.+++.++-.+++.+++
T Consensus 102 iiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 102 CIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred EEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 99999652 2332 12111111 1224799998754 344445556789999999999999998766
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 145 FDTHKPLEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
.... ..-.++...-|++.+.| ..-++..+
T Consensus 181 ~~~~--~~l~~~v~~~L~~~~~~--d~r~l~~~ 209 (235)
T PRK08084 181 RLRG--FELPEDVGRFLLKRLDR--EMRTLFMT 209 (235)
T ss_pred HHcC--CCCCHHHHHHHHHhhcC--CHHHHHHH
Confidence 4322 22235788899999998 55555433
No 34
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00014 Score=72.83 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=64.9
Q ss_pred cCceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEE-EecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCC
Q 040234 74 RRKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIII-TTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHK 149 (377)
Q Consensus 74 ~~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIv-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 149 (377)
.++.-++|||+++. ...++.|+..+..-..+.++|+ ||....+...+ +....+.+..++.++..+.+.+.+.....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 34566999999986 4567777776654345566555 45444444332 33577899999999999988877643221
Q ss_pred CchhHHHHHHHHHHHhCCCCchhhHH
Q 040234 150 PLEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 150 ~~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
. ...+..+.|++.++| .+....
T Consensus 202 ~--~d~eAL~~IA~~A~G--s~RdAL 223 (700)
T PRK12323 202 A--HEVNALRLLAQAAQG--SMRDAL 223 (700)
T ss_pred C--CCHHHHHHHHHHcCC--CHHHHH
Confidence 1 124566788999999 876443
No 35
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00011 Score=74.70 Aligned_cols=99 Identities=8% Similarity=0.001 Sum_probs=64.4
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|||+++.. ..++.|+..+..-....++|+||++. .+... .+....+.++.++.++..+.|.+......-
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI- 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI- 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 34558999999874 44676766554435577877777664 33222 234678999999999999999887643321
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALM 176 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~ 176 (377)
....+..+.|++.++| .+.-++.+
T Consensus 197 -~id~eAL~lIA~~A~G-smRdALsL 220 (830)
T PRK07003 197 -AFEPQALRLLARAAQG-SMRDALSL 220 (830)
T ss_pred -CCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 1224667788888877 13344443
No 36
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00013 Score=75.41 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=63.9
Q ss_pred cCceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEe-cchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCC
Q 040234 74 RRKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITT-RNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHK 149 (377)
Q Consensus 74 ~~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 149 (377)
.+++-++|||++.. .+..+.|+..+..-....++|++| ....+... ......+++.+|+.++..+.+.+.+....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 35667999999976 456677666654434456665554 44444322 23457899999999999999888764321
Q ss_pred CchhHHHHHHHHHHHhCCCCchhhH
Q 040234 150 PLEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 150 ~~~~~~~~~~~I~~~c~G~~lplal 174 (377)
.....+.+..|++.++| .+--+
T Consensus 196 -I~~edeAL~lIA~~S~G--d~R~A 217 (944)
T PRK14949 196 -LPFEAEALTLLAKAANG--SMRDA 217 (944)
T ss_pred -CCCCHHHHHHHHHHcCC--CHHHH
Confidence 12224667888888888 77533
No 37
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=0.00017 Score=70.01 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=87.1
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|+|||.|++.+++++.++.+ ..+.+. +...+...+...+... . .+.+++.+++ .-+|
T Consensus 145 ~G~GKThL~~ai~~~l~~~~~~~~v~yi----------~~~~~~~~~~~~~~~~------~----~~~~~~~~~~-~dlL 203 (405)
T TIGR00362 145 VGLGKTHLLHAIGNEILENNPNAKVVYV----------SSEKFTNDFVNALRNN------K----MEEFKEKYRS-VDLL 203 (405)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcEEEE----------EHHHHHHHHHHHHHcC------C----HHHHHHHHHh-CCEE
Confidence 799999999999998766543 223222 2233444444443211 1 2233344433 3488
Q ss_pred EEeCCCChh---h-hhHhhCCCCCC-CCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHhcC
Q 040234 81 VIDDAAHPD---H-LRRLVGEPDWF-GPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 81 VLDdv~~~~---~-~~~l~~~l~~~-~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 146 (377)
||||+.... . .+.+...+... ..+..+|+||... .+..++.....+++++.+.++-.+++.+++..
T Consensus 204 iiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 204 LIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred EEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 999996421 1 11122111110 2345688887642 12222333457899999999999999988854
Q ss_pred CCCCchhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 147 THKPLEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 147 ~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
..... .+++..-|++.+.| ..-.+..+-
T Consensus 284 ~~~~l--~~e~l~~ia~~~~~--~~r~l~~~l 311 (405)
T TIGR00362 284 EGLEL--PDEVLEFIAKNIRS--NVRELEGAL 311 (405)
T ss_pred cCCCC--CHHHHHHHHHhcCC--CHHHHHHHH
Confidence 32222 25677888888888 666554433
No 38
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00017 Score=71.87 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=59.9
Q ss_pred cCceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEE-EEecchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCC
Q 040234 74 RRKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRII-ITTRNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHK 149 (377)
Q Consensus 74 ~~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~II-vTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 149 (377)
.+++-++|+|+++. ....+.|+..+..-.....+| +||....+... ......+++.+++.++..+.+.+.+....
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg- 195 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN- 195 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-
Confidence 34566999999975 345666666555434455555 45554444433 23467899999999999888877553221
Q ss_pred CchhHHHHHHHHHHHhCCCCchh
Q 040234 150 PLEEYVELAESVVRICHCQKSTL 172 (377)
Q Consensus 150 ~~~~~~~~~~~I~~~c~G~~lpl 172 (377)
....++....|++.++| .+-
T Consensus 196 -i~~e~~Al~~Ia~~s~G--dlR 215 (546)
T PRK14957 196 -INSDEQSLEYIAYHAKG--SLR 215 (546)
T ss_pred -CCCCHHHHHHHHHHcCC--CHH
Confidence 11224556778888887 554
No 39
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00067 Score=63.50 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=64.1
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchhH-HhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEHL-LKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++. .+.++.|+..+..-.+++.+|++|.+... ...+ +....+++.++++++....+.+.... .
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~---~ 168 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND---I 168 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC---C
Confidence 3455677777654 56688888877765678888888876532 2221 33678999999999998888765421 1
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALM 176 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~ 176 (377)
. .+.++.++..++| .|..+..
T Consensus 169 ~---~~~~~~l~~~~~g--~~~~a~~ 189 (313)
T PRK05564 169 K---EEEKKSAIAFSDG--IPGKVEK 189 (313)
T ss_pred C---HHHHHHHHHHcCC--CHHHHHH
Confidence 1 3446788999999 9976543
No 40
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00024 Score=71.38 Aligned_cols=95 Identities=12% Similarity=0.033 Sum_probs=61.6
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|||++... ...+.|+..+..-..+.++|++|.+. .+... ......+++++|+.++..+.+.+.+.....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI- 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI- 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999999863 45666665554434566777776653 23211 244678999999999999998877643221
Q ss_pred chhHHHHHHHHHHHhCCCCchhh
Q 040234 151 LEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpla 173 (377)
....+....|++.++| .+-.
T Consensus 196 -~id~eAL~~IA~~S~G--dLRd 215 (702)
T PRK14960 196 -AADQDAIWQIAESAQG--SLRD 215 (702)
T ss_pred -CCCHHHHHHHHHHcCC--CHHH
Confidence 1224566778888887 5543
No 41
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=0.00018 Score=70.89 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=88.6
Q ss_pred CCCcHHHHHHHHHchhcccccc-ceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDG-SSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~-~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|+|||+||+.+++++.++++. .+.+. +...+...+...+... . .+.+++.++. .-+|
T Consensus 157 ~G~GKThL~~ai~~~~~~~~~~~~v~yi----------~~~~~~~~~~~~~~~~------~----~~~~~~~~~~-~dlL 215 (450)
T PRK00149 157 VGLGKTHLLHAIGNYILEKNPNAKVVYV----------TSEKFTNDFVNALRNN------T----MEEFKEKYRS-VDVL 215 (450)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEE----------EHHHHHHHHHHHHHcC------c----HHHHHHHHhc-CCEE
Confidence 7999999999999988776643 23222 2334444444443211 1 2333444442 4489
Q ss_pred EEeCCCCh---h-hhhHhhC---CCCCCCCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 81 VIDDAAHP---D-HLRRLVG---EPDWFGPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 81 VLDdv~~~---~-~~~~l~~---~l~~~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
||||+... + ..+.+.. .+. ..+..||+||... .+..++.....+++++.+.++-.+++.+++
T Consensus 216 iiDDi~~l~~~~~~~~~l~~~~n~l~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 216 LIDDIQFLAGKERTQEEFFHTFNALH--EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEehhhhhcCCHHHHHHHHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 99999642 1 1112222 111 2344588887643 123334445678999999999999999988
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 145 FDTHKPLEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
...... -.+++..-|++.++| ..-.+..+-
T Consensus 294 ~~~~~~--l~~e~l~~ia~~~~~--~~R~l~~~l 323 (450)
T PRK00149 294 EEEGID--LPDEVLEFIAKNITS--NVRELEGAL 323 (450)
T ss_pred HHcCCC--CCHHHHHHHHcCcCC--CHHHHHHHH
Confidence 542211 225678888888888 666554333
No 42
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00088 Score=63.80 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++. .+..+.|+..+..-..++.+|++|.+. .+... .+....+.+.+++.++..+++.+.....
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 4567999999976 344555555444324566677777665 33322 2446789999999999999998764211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
. .+....+++.++| .|+....+.
T Consensus 217 ~---~~~~~~l~~~s~G--sp~~Al~ll 239 (365)
T PRK07471 217 P---DDPRAALAALAEG--SVGRALRLA 239 (365)
T ss_pred C---HHHHHHHHHHcCC--CHHHHHHHh
Confidence 1 1223688999999 998665544
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00032 Score=68.98 Aligned_cols=101 Identities=12% Similarity=-0.008 Sum_probs=61.5
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|++... ++.+.|+..+....+...+|++|.+ ..+...+ .....+++.+++.++....+.+.+......
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 45669999999753 3455565555432334444444433 3343332 345788999999999999888877432211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
-.++....|++.++| .++.++..+-
T Consensus 196 --i~~eal~~Ia~~s~G-dlR~aln~Le 220 (472)
T PRK14962 196 --IDREALSFIAKRASG-GLRDALTMLE 220 (472)
T ss_pred --CCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 124567788887765 2566655443
No 44
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00036 Score=67.02 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=60.8
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. ...+.|+..+..-.++..+|++|.+ ..+...+ +....+.+.+++.++..+.+.+..+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---- 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---- 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC----
Confidence 34558888999863 3445555544433456666666555 3444332 34678999999999999888754311
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
. .+.+..+++.++| .|......
T Consensus 192 ~---~~~a~~la~~s~G--~~~~A~~l 213 (394)
T PRK07940 192 D---PETARRAARASQG--HIGRARRL 213 (394)
T ss_pred C---HHHHHHHHHHcCC--CHHHHHHH
Confidence 1 3557889999999 88755433
No 45
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00055 Score=66.96 Aligned_cols=143 Identities=15% Similarity=0.094 Sum_probs=79.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
..|+|||+|++.+++.+.......+++. ...+...+...+... ..+.+++.++. .-+|
T Consensus 149 ~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~----------~~~~f~~~~~~-~dvL 206 (445)
T PRK12422 149 PEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG----------EMQRFRQFYRN-VDAL 206 (445)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc----------hHHHHHHHccc-CCEE
Confidence 3799999999999997755422333332 233334444443211 12334444443 3488
Q ss_pred EEeCCCChh----hhhHhhCCCCCC-CCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHhcC
Q 040234 81 VIDDAAHPD----HLRRLVGEPDWF-GPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 81 VLDdv~~~~----~~~~l~~~l~~~-~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 146 (377)
+|||+.... ..+.+...+... ..|..||+||... .+..++.....+++.+++.++-.+++.+++-.
T Consensus 207 iIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred EEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 889985421 111221111100 2345788888542 22333444578899999999999999888744
Q ss_pred CCCCchhHHHHHHHHHHHhCC
Q 040234 147 THKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 147 ~~~~~~~~~~~~~~I~~~c~G 167 (377)
..-.. .+++..-|++...+
T Consensus 287 ~~~~l--~~evl~~la~~~~~ 305 (445)
T PRK12422 287 LSIRI--EETALDFLIEALSS 305 (445)
T ss_pred cCCCC--CHHHHHHHHHhcCC
Confidence 32111 13455556666655
No 46
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00016 Score=70.44 Aligned_cols=95 Identities=9% Similarity=-0.088 Sum_probs=61.5
Q ss_pred cCceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEE-EEecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCC
Q 040234 74 RRKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRII-ITTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHK 149 (377)
Q Consensus 74 ~~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~II-vTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 149 (377)
.++.-++|||++.. .+.++.|+..+..-.....+| .||....+...+ +....+.+.+++.++..+.+.+.+.....
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 34566999999976 456777776665433444544 455444443332 34567999999999999888877643221
Q ss_pred CchhHHHHHHHHHHHhCCCCchh
Q 040234 150 PLEEYVELAESVVRICHCQKSTL 172 (377)
Q Consensus 150 ~~~~~~~~~~~I~~~c~G~~lpl 172 (377)
.-.++....|++.++| .+-
T Consensus 199 --~~e~eAL~~Ia~~S~G--d~R 217 (484)
T PRK14956 199 --QYDQEGLFWIAKKGDG--SVR 217 (484)
T ss_pred --CCCHHHHHHHHHHcCC--hHH
Confidence 1124567788888888 653
No 47
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0014 Score=62.08 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=62.7
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEe-cchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITT-RNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. ...+.|+..+..-..+..+|++| +...+...+ +....+++.+++.++..+++.+... ...
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~-~~~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS-SQG- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc-ccC-
Confidence 45669999999863 34455554443323445545444 433333222 3357899999999999999987431 111
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
..++.+..|++.++| .|.....+..
T Consensus 218 --~~~~~~~~i~~~s~G--~pr~Al~ll~ 242 (351)
T PRK09112 218 --SDGEITEALLQRSKG--SVRKALLLLN 242 (351)
T ss_pred --CCHHHHHHHHHHcCC--CHHHHHHHHh
Confidence 124457789999999 9987655443
No 48
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0015 Score=61.29 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=61.8
Q ss_pred ceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCCc
Q 040234 76 KKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKPL 151 (377)
Q Consensus 76 k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 151 (377)
++-++|+|+++. .+..+.|+..+..-..++.+|+||.+. .+...+ +....+.+.+++.+++.+.+.......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~---- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES---- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC----
Confidence 344567899986 445566665554434567777777765 333332 346779999999999999887654111
Q ss_pred hhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 152 EEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 152 ~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
..+.+..+++.++| .|+.....
T Consensus 182 --~~~~~~~~l~la~G--sp~~A~~l 203 (328)
T PRK05707 182 --DERERIELLTLAGG--SPLRALQL 203 (328)
T ss_pred --ChHHHHHHHHHcCC--CHHHHHHH
Confidence 13445678899999 99865544
No 49
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.75 E-value=0.00018 Score=74.25 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=53.5
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEE--Eecchh--HHhh-CCCCCeeecCCCChhhhHHHHHHHhcC-
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIII--TTRNEH--LLKL-HPVKKVYKLEALTYDEAFRLLCLKAFD- 146 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIv--TTR~~~--v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~- 146 (377)
+++.+|+||+++. ..+.+.|++.+. .+..+++ ||.+.. +... .+....+.+++|+.++...++.+.+..
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 4567999999975 455666665542 3444554 344431 2111 123567899999999999999876631
Q ss_pred ----CCCCchhHHHHHHHHHHHhCC
Q 040234 147 ----THKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 147 ----~~~~~~~~~~~~~~I~~~c~G 167 (377)
......-.++..+.|++.++|
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCC
Confidence 011111224556667777766
No 50
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00067 Score=68.01 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=87.9
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|+|||.|++.+++.....++ ..+.+. ...++...+...+... ..+.+++.+.+- =||
T Consensus 323 sGsGKTHLL~AIa~~a~~~~~g~~V~Yi----------taeef~~el~~al~~~----------~~~~f~~~y~~~-DLL 381 (617)
T PRK14086 323 SGLGKTHLLHAIGHYARRLYPGTRVRYV----------SSEEFTNEFINSIRDG----------KGDSFRRRYREM-DIL 381 (617)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEe----------eHHHHHHHHHHHHHhc----------cHHHHHHHhhcC-CEE
Confidence 699999999999997765443 233333 3444444554443211 123344444433 478
Q ss_pred EEeCCCCh---hh----hhHhhCCCCCCCCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 81 VIDDAAHP---DH----LRRLVGEPDWFGPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 81 VLDdv~~~---~~----~~~l~~~l~~~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
||||+... +. +-.+...+. ..+..||+||+.. .+..++...-++++.+.+.+.-.++|.+++
T Consensus 382 lIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 382 LVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 89998642 21 222222222 2355688888752 334445567788999999999999999887
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 145 FDTHKPLEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
....-.. .++++.-|++.+.+ ..-.|..+
T Consensus 460 ~~r~l~l--~~eVi~yLa~r~~r--nvR~Lega 488 (617)
T PRK14086 460 VQEQLNA--PPEVLEFIASRISR--NIRELEGA 488 (617)
T ss_pred HhcCCCC--CHHHHHHHHHhccC--CHHHHHHH
Confidence 4432222 24667777777776 54444433
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=97.71 E-value=0.0003 Score=69.87 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=80.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+||||+|+.+++++. ++. +-+. .+.. .....+..++....... .....++-+|
T Consensus 47 ppG~GKTtla~ala~el~--~~~-ieln-asd~-----r~~~~i~~~i~~~~~~~---------------sl~~~~~kvI 102 (482)
T PRK04195 47 PPGVGKTSLAHALANDYG--WEV-IELN-ASDQ-----RTADVIERVAGEAATSG---------------SLFGARRKLI 102 (482)
T ss_pred CCCCCHHHHHHHHHHHcC--CCE-EEEc-cccc-----ccHHHHHHHHHHhhccC---------------cccCCCCeEE
Confidence 479999999999999763 211 1111 2221 11223333332221110 0111356799
Q ss_pred EEeCCCChh------hhhHhhCCCCCCCCCCeEEEEecchh-HHh-h-CCCCCeeecCCCChhhhHHHHHHHhcCCCCCc
Q 040234 81 VIDDAAHPD------HLRRLVGEPDWFGPGSRIIITTRNEH-LLK-L-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPL 151 (377)
Q Consensus 81 VLDdv~~~~------~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~-~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 151 (377)
|||+++... .+..+...+. ..+..||+|+.+.. ... . ......+++.+++.++....+...+.......
T Consensus 103 iIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i 180 (482)
T PRK04195 103 LLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC 180 (482)
T ss_pred EEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 999997632 2444443333 23345666664421 111 1 13356789999999999998887764332221
Q ss_pred hhHHHHHHHHHHHhCCCCchhhHH
Q 040234 152 EEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 152 ~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
..++...|++.++| ++-.++.
T Consensus 181 --~~eaL~~Ia~~s~G-DlR~ain 201 (482)
T PRK04195 181 --DDEALKEIAERSGG-DLRSAIN 201 (482)
T ss_pred --CHHHHHHHHHHcCC-CHHHHHH
Confidence 24678889999988 2333443
No 52
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.71 E-value=0.00035 Score=62.10 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=58.0
Q ss_pred eEEEEEeCCCCh--hhhhHhhCCCCCC-CCCC-eEEEEecchhHH--------hhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 77 KVLVVIDDAAHP--DHLRRLVGEPDWF-GPGS-RIIITTRNEHLL--------KLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 77 ~~LLVLDdv~~~--~~~~~l~~~l~~~-~~gs-~IIvTTR~~~v~--------~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
.-+||+||++.. .....+...+... ..+. .+|+|++..... ..+.....+++++|++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347899999653 2222222222110 1233 366666643211 122334688999999988777776654
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhh
Q 040234 145 FDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSY 180 (377)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~ 180 (377)
.... ..-.++..+.|++...| .+..+..+...
T Consensus 171 ~~~~--v~l~~~al~~L~~~~~g--n~~~l~~~l~~ 202 (227)
T PRK08903 171 AERG--LQLADEVPDYLLTHFRR--DMPSLMALLDA 202 (227)
T ss_pred HHcC--CCCCHHHHHHHHHhccC--CHHHHHHHHHH
Confidence 2221 11225678889999999 88888765554
No 53
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00062 Score=66.96 Aligned_cols=95 Identities=15% Similarity=0.095 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEe-cchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITT-RNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|+|++.. .+.++.|+..+..-.+..++|++| ..+.+...+ .....+++.+++.++..+.+.+.+......
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 4556899999975 344666665554434566666555 444444332 346778999999999999988877443221
Q ss_pred chhHHHHHHHHHHHhCCCCchhh
Q 040234 151 LEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpla 173 (377)
-.++.+..|++.++| .+..
T Consensus 195 --i~~eAL~lIa~~s~G--slR~ 213 (491)
T PRK14964 195 --HDEESLKLIAENSSG--SMRN 213 (491)
T ss_pred --CCHHHHHHHHHHcCC--CHHH
Confidence 224567788888888 6653
No 54
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.69 E-value=0.00061 Score=70.17 Aligned_cols=168 Identities=14% Similarity=0.089 Sum_probs=88.6
Q ss_pred CCCCcHHHHHHHHHchhccc-----cc--cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh
Q 040234 1 MGGLGKTTLARVVYDLISHE-----FD--GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL 73 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~-----f~--~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 73 (377)
++|.|||++++.|.+++.+. .+ ..+++. ..... ....+...|..++.+..........+..+.+...+
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~Ls----tp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMNVV----HPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCccC----CHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 47999999999999865432 22 123444 33322 56677888888875443222222233444444443
Q ss_pred c---CceEEEEEeCCCChh-----hhhHhhCCCCCCCCCCeEEE--Eecch--------hHHhhCCCCCeeecCCCChhh
Q 040234 74 R---RKKVLVVIDDAAHPD-----HLRRLVGEPDWFGPGSRIII--TTRNE--------HLLKLHPVKKVYKLEALTYDE 135 (377)
Q Consensus 74 ~---~k~~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs~IIv--TTR~~--------~v~~~~~~~~~~~l~~L~~~e 135 (377)
. ....+||||+++... .+-.|..... ..+++|+| +|..- .+...+. ...+...|++.++
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQ 940 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDE 940 (1164)
T ss_pred hcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCCCCHHH
Confidence 2 224589999997532 2222222111 23455444 34321 1112222 2346679999999
Q ss_pred hHHHHHHHhcCCCC--CchhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 136 AFRLLCLKAFDTHK--PLEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 136 a~~L~~~~~~~~~~--~~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
-.+++..++..... ....++-+|+.++..-|- .-.||.++-
T Consensus 941 L~dILk~RAe~A~gVLdDdAIELIArkVAq~SGD--ARKALDILR 983 (1164)
T PTZ00112 941 IEKIIKERLENCKEIIDHTAIQLCARKVANVSGD--IRKALQICR 983 (1164)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCH--HHHHHHHHH
Confidence 99999998853221 222333333433333344 666665443
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00039 Score=70.47 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=62.0
Q ss_pred cCceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEE-EecchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCC
Q 040234 74 RRKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIII-TTRNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHK 149 (377)
Q Consensus 74 ~~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIv-TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 149 (377)
.++.-++|||++.. .+..+.|+..+..-....++|+ ||....+... .+....+.+.+|+.++..+.+.+.......
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35667999999976 4456666655544344555555 4444444332 233678999999999999998876632211
Q ss_pred CchhHHHHHHHHHHHhCCCCchhhH
Q 040234 150 PLEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 150 ~~~~~~~~~~~I~~~c~G~~lplal 174 (377)
....+....|++.++| .+-.+
T Consensus 197 --~~e~~aL~~Ia~~s~G--s~R~A 217 (647)
T PRK07994 197 --PFEPRALQLLARAADG--SMRDA 217 (647)
T ss_pred --CCCHHHHHHHHHHcCC--CHHHH
Confidence 1124566778888888 76643
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.67 E-value=0.00053 Score=63.36 Aligned_cols=141 Identities=19% Similarity=0.273 Sum_probs=85.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+||||||+.++..-+.+- ..|+. ++... .-..-.+.++++... ...+..||.+|
T Consensus 170 ppG~GKTtlArlia~tsk~~S--yrfve-lSAt~----a~t~dvR~ife~aq~----------------~~~l~krkTil 226 (554)
T KOG2028|consen 170 PPGTGKTTLARLIASTSKKHS--YRFVE-LSATN----AKTNDVRDIFEQAQN----------------EKSLTKRKTIL 226 (554)
T ss_pred CCCCchHHHHHHHHhhcCCCc--eEEEE-Eeccc----cchHHHHHHHHHHHH----------------HHhhhcceeEE
Confidence 479999999999999666552 23333 33332 122223333333111 12346788999
Q ss_pred EEeCCCC--hhhhhHhhCCCCCCCCCCeEEE--EecchhH---HhhCCCCCeeecCCCChhhhHHHHHHHhc---CCCC-
Q 040234 81 VIDDAAH--PDHLRRLVGEPDWFGPGSRIII--TTRNEHL---LKLHPVKKVYKLEALTYDEAFRLLCLKAF---DTHK- 149 (377)
Q Consensus 81 VLDdv~~--~~~~~~l~~~l~~~~~gs~IIv--TTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L~~~~~~---~~~~- 149 (377)
.+|.|-. ..|-+.|++.. ..|.-++| ||.++.. ...+....++.|+.|..++-..+|.+..- ....
T Consensus 227 FiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~ 303 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERP 303 (554)
T ss_pred EeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhcccccc
Confidence 9999953 55666666654 45665554 7777654 22235578899999999999999887432 2221
Q ss_pred --Cch-----hHHHHHHHHHHHhCC
Q 040234 150 --PLE-----EYVELAESVVRICHC 167 (377)
Q Consensus 150 --~~~-----~~~~~~~~I~~~c~G 167 (377)
+.+ -...+.+-++..|.|
T Consensus 304 ~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 304 TDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred CCCCCCcchhhhHHHHHHHHHhcCc
Confidence 111 234566677777877
No 57
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00054 Score=68.12 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=59.0
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|+|+|+. .+..+.|+..+..-.+.+++|++|.+ +.+...+ .....+++++++.++..+.+...+......
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4556899999986 34566666555443456666655443 3333222 335678899999998888776665332211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
...+....|++.++| .+..+
T Consensus 198 --~~~~al~~ia~~s~G--slR~a 217 (509)
T PRK14958 198 --FENAALDLLARAANG--SVRDA 217 (509)
T ss_pred --CCHHHHHHHHHHcCC--cHHHH
Confidence 123456778888888 66544
No 58
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.64 E-value=5e-05 Score=68.28 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCCCcHHHHHHHHHchhc-cccccceEEecchhh-cccccCHHHHHHHHHHHHhhccccCcc-----chhhhHHHHHHH-
Q 040234 1 MGGLGKTTLARVVYDLIS-HEFDGSSFLADVREK-CDKEGSVISLQKQLLSDLLKLADNNIR-----NVYDGINMLRVR- 72 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~-~~f~~~~w~~~~~~~-~~~~~~~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~~l~~~- 72 (377)
.+|+|||||++.+++.+. .+|+..+|+..+++. . ++.++++.+...+.......+. ......+.....
T Consensus 24 ~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~----ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~ 99 (249)
T cd01128 24 PPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPE----EVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLV 99 (249)
T ss_pred CCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCc----cHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999654 368888898844432 2 7788888873332211111110 001111222222
Q ss_pred hcCceEEEEEeCCCC
Q 040234 73 LRRKKVLVVIDDAAH 87 (377)
Q Consensus 73 l~~k~~LLVLDdv~~ 87 (377)
-.+++.+|++|++..
T Consensus 100 ~~G~~vll~iDei~r 114 (249)
T cd01128 100 EHGKDVVILLDSITR 114 (249)
T ss_pred HCCCCEEEEEECHHH
Confidence 247899999999965
No 59
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.62 E-value=0.0014 Score=62.41 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=63.0
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecchh-HHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNEH-LLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. ...+.++..+......+.+|++|.+.. +...+ .....+++.++++++..+.+..++-.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 34558999998763 445555555543344566666665443 32222 234678899999999999888876432211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
. .++.+..|++.++| .|..+...
T Consensus 196 i--~~~a~~~l~~~~~g--~~~~a~~~ 218 (355)
T TIGR02397 196 I--EDEALELIARAADG--SLRDALSL 218 (355)
T ss_pred C--CHHHHHHHHHHcCC--ChHHHHHH
Confidence 1 24678889999999 88665443
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.0005 Score=69.68 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=59.3
Q ss_pred CceEEEEEeCCCChh--hhhHhhCCCCCCCCCCeEEEEecch-hHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHPD--HLRRLVGEPDWFGPGSRIIITTRNE-HLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|||++.... ..+.|+..+..-....++|++|.+. .+... .+....+.+.+++.++..+.+.+.+.....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi- 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI- 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456689999997633 3445554443324456666666543 23221 133456788899999999988877643221
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
....+.+..|++.++| .+.-+
T Consensus 197 -~id~eAL~~Ia~~A~G--slRdA 217 (709)
T PRK08691 197 -AYEPPALQLLGRAAAG--SMRDA 217 (709)
T ss_pred -CcCHHHHHHHHHHhCC--CHHHH
Confidence 1224567888888888 66443
No 61
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0012 Score=66.84 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=61.5
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEe-cchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITT-RNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|||+|+. .+.++.|+..+..-....++|++| ..+.+... ......+++++|+.++..+.+.+.+......
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 3455899999986 456777776665434455666554 43444322 2346789999999999999988776432221
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
...+.+..|++.++| .+--+
T Consensus 203 --ie~~AL~~La~~s~G--slR~a 222 (618)
T PRK14951 203 --AEPQALRLLARAARG--SMRDA 222 (618)
T ss_pred --CCHHHHHHHHHHcCC--CHHHH
Confidence 124566778888877 55443
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.60 E-value=0.00073 Score=64.64 Aligned_cols=140 Identities=15% Similarity=0.187 Sum_probs=74.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+|||+||+.++++....|- . +.. ..+.... .+. ........+...-...+.+|
T Consensus 164 ppGtGKT~lakaia~~l~~~~~-----~-v~~--------~~l~~~~----~g~------~~~~i~~~f~~a~~~~p~il 219 (364)
T TIGR01242 164 PPGTGKTLLAKAVAHETNATFI-----R-VVG--------SELVRKY----IGE------GARLVREIFELAKEKAPSII 219 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCEE-----e-cch--------HHHHHHh----hhH------HHHHHHHHHHHHHhcCCcEE
Confidence 4799999999999997765532 1 110 1111110 000 00011111222223456799
Q ss_pred EEeCCCCh----------------hhhhHhhCCCCC--CCCCCeEEEEecchhH-----HhhCCCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHP----------------DHLRRLVGEPDW--FGPGSRIIITTRNEHL-----LKLHPVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~----------------~~~~~l~~~l~~--~~~gs~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~ 137 (377)
+||+++.. ..+..++..+.. ...+..||.||..... .+.......+.++..+.++..
T Consensus 220 ~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~ 299 (364)
T TIGR01242 220 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRL 299 (364)
T ss_pred EhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHH
Confidence 99998652 112233322221 1235678888875432 111122467889999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 138 RLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 138 ~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
++|..+......... .....+++.+.|
T Consensus 300 ~Il~~~~~~~~l~~~---~~~~~la~~t~g 326 (364)
T TIGR01242 300 EILKIHTRKMKLAED---VDLEAIAKMTEG 326 (364)
T ss_pred HHHHHHHhcCCCCcc---CCHHHHHHHcCC
Confidence 999887744322211 124567788877
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.00066 Score=67.91 Aligned_cols=95 Identities=8% Similarity=-0.006 Sum_probs=59.6
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecc-hhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRN-EHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. +..+.|+..+..-...+.+|++|.+ +.+... ......+++++++.++..+.+.+.+.....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi- 196 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI- 196 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45679999999863 3456666555443445566655543 333222 122567889999999999888776632221
Q ss_pred chhHHHHHHHHHHHhCCCCchhh
Q 040234 151 LEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpla 173 (377)
...++.+..|++.++| .+--
T Consensus 197 -~~~~~al~~la~~s~G--slr~ 216 (527)
T PRK14969 197 -PFDATALQLLARAAAG--SMRD 216 (527)
T ss_pred -CCCHHHHHHHHHHcCC--CHHH
Confidence 1124566788888888 7753
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.58 E-value=0.00044 Score=56.07 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=48.3
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.+++.....-...+++. ..+.. .. ......... . ............++.+|
T Consensus 27 ~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~----~~-~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~l 88 (151)
T cd00009 27 PPGTGKTTLARAIANELFRPGAPFLYLN-ASDLL----EG-LVVAELFGH-F-----------LVRLLFELAEKAKPGVL 88 (151)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhh----hh-hHHHHHhhh-h-----------hHhHHHHhhccCCCeEE
Confidence 3799999999999997643322333333 33321 10 000000000 0 00111122234567899
Q ss_pred EEeCCCCh-----hhhhHhhCCCCCC---CCCCeEEEEecch
Q 040234 81 VIDDAAHP-----DHLRRLVGEPDWF---GPGSRIIITTRNE 114 (377)
Q Consensus 81 VLDdv~~~-----~~~~~l~~~l~~~---~~gs~IIvTTR~~ 114 (377)
|+||++.. ..+..+....... ..+..||+||...
T Consensus 89 ilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 89 FIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred EEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 99999853 2233333333221 3577888888865
No 65
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.57 E-value=8.9e-05 Score=70.02 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=49.4
Q ss_pred CCCCcHHHHHHHHHchhcc-ccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccch-----hhhHHHHHHH-h
Q 040234 1 MGGLGKTTLARVVYDLISH-EFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNV-----YDGINMLRVR-L 73 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~l~~~-l 73 (377)
.+|+||||||+++++.+.. +|+..+|+..+++ .. ..+.++++.+...+.......+... ....+.-+.. -
T Consensus 177 ppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE-R~--~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e 253 (416)
T PRK09376 177 PPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE-RP--EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVE 253 (416)
T ss_pred CCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC-ch--hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999996543 7888899985444 21 1666777776532211111111000 0111111111 3
Q ss_pred cCceEEEEEeCCCC
Q 040234 74 RRKKVLVVIDDAAH 87 (377)
Q Consensus 74 ~~k~~LLVLDdv~~ 87 (377)
.+++.||++|++..
T Consensus 254 ~G~dVlL~iDsItR 267 (416)
T PRK09376 254 HGKDVVILLDSITR 267 (416)
T ss_pred cCCCEEEEEEChHH
Confidence 67899999999854
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.53 E-value=0.0018 Score=60.61 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCCch
Q 040234 77 KVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKPLE 152 (377)
Q Consensus 77 ~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~ 152 (377)
+-++++|+++.. +....+...+....+.+.+|+++... .+.... .....+++.++++++....+...+......
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~-- 180 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE-- 180 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC--
Confidence 558999998753 23334443333324456777766432 221111 224568999999999999988877433221
Q ss_pred hHHHHHHHHHHHhCCCCchhhH
Q 040234 153 EYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 153 ~~~~~~~~I~~~c~G~~lplal 174 (377)
-.++.+..+++.++| .+..+
T Consensus 181 i~~~al~~l~~~~~g--d~r~~ 200 (319)
T PRK00440 181 ITDDALEAIYYVSEG--DMRKA 200 (319)
T ss_pred CCHHHHHHHHHHcCC--CHHHH
Confidence 124578889999999 66553
No 67
>PRK06620 hypothetical protein; Validated
Probab=97.53 E-value=0.00065 Score=59.81 Aligned_cols=92 Identities=8% Similarity=-0.025 Sum_probs=57.5
Q ss_pred EEEEEeCCCChh--hhhHhhCCCCCCCCCCeEEEEecch-------hHHhhCCCCCeeecCCCChhhhHHHHHHHhcCCC
Q 040234 78 VLVVIDDAAHPD--HLRRLVGEPDWFGPGSRIIITTRNE-------HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFDTH 148 (377)
Q Consensus 78 ~LLVLDdv~~~~--~~~~l~~~l~~~~~gs~IIvTTR~~-------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 148 (377)
-+|++||+...+ .+-.+...+. ..|..||+|++.+ .+..++....++++++++.++-.+++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899997532 2222222222 3466899998743 2233344456899999999998888887764221
Q ss_pred CCchhHHHHHHHHHHHhCCCCchhhHH
Q 040234 149 KPLEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 149 ~~~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
..-.+++.+-|++.+.| ---.+.
T Consensus 165 --l~l~~ev~~~L~~~~~~--d~r~l~ 187 (214)
T PRK06620 165 --VTISRQIIDFLLVNLPR--EYSKII 187 (214)
T ss_pred --CCCCHHHHHHHHHHccC--CHHHHH
Confidence 11225788889999988 444443
No 68
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0026 Score=60.58 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=97.3
Q ss_pred CCCcHHHHHHHHHchhccccccc--eEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhc--Cce
Q 040234 2 GGLGKTTLARVVYDLISHEFDGS--SFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLR--RKK 77 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~--~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~ 77 (377)
.|.|||+.++.+.+++++..+.. +++. +.... ...+++..++++++.. +....+..+..+.+.+.+. ++.
T Consensus 51 ~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~~~----t~~~i~~~i~~~~~~~-p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 51 TGTGKTATVKFVMEELEESSANVEVVYIN-CLELR----TPYQVLSKILNKLGKV-PLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred CCCCHhHHHHHHHHHHHhhhccCceEEEe-eeeCC----CHHHHHHHHHHHcCCC-CCCCCchHHHHHHHHHHHHhcCCe
Confidence 69999999999999887775544 5555 54444 7789999999988633 2222344455566666664 478
Q ss_pred EEEEEeCCCChh-----hhhHhhCCCCCCCCCCeE--EEEecchhHH--------hhCCCCCeeecCCCChhhhHHHHHH
Q 040234 78 VLVVIDDAAHPD-----HLRRLVGEPDWFGPGSRI--IITTRNEHLL--------KLHPVKKVYKLEALTYDEAFRLLCL 142 (377)
Q Consensus 78 ~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs~I--IvTTR~~~v~--------~~~~~~~~~~l~~L~~~ea~~L~~~ 142 (377)
+++|||+++... .+-.|...... ..++| |..+-+-... ..++. ..+..+|-+.++-.+++..
T Consensus 125 ~IvvLDEid~L~~~~~~~LY~L~r~~~~--~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~ 201 (366)
T COG1474 125 VIVILDEVDALVDKDGEVLYSLLRAPGE--NKVKVSIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRE 201 (366)
T ss_pred EEEEEcchhhhccccchHHHHHHhhccc--cceeEEEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHH
Confidence 999999997632 22223222111 13433 3344433222 22222 3377899999999999988
Q ss_pred HhcCC---CCCchhHHHHHHHHHHHhCCCCchhhHHH
Q 040234 143 KAFDT---HKPLEEYVELAESVVRICHCQKSTLNALM 176 (377)
Q Consensus 143 ~~~~~---~~~~~~~~~~~~~I~~~c~G~~lplal~~ 176 (377)
++-.. ...++...+.+..++..-+| +.-.|+..
T Consensus 202 R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidi 237 (366)
T COG1474 202 RVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDI 237 (366)
T ss_pred HHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHH
Confidence 87432 22233333444444444443 15555443
No 69
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.0011 Score=63.20 Aligned_cols=153 Identities=17% Similarity=0.130 Sum_probs=90.3
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||.|++.+.+...+..+....+. + ........++.++.. ...+.+++.. .-=+|+
T Consensus 122 ~GlGKTHLl~Aign~~~~~~~~a~v~y-~--------~se~f~~~~v~a~~~----------~~~~~Fk~~y--~~dlll 180 (408)
T COG0593 122 VGLGKTHLLQAIGNEALANGPNARVVY-L--------TSEDFTNDFVKALRD----------NEMEKFKEKY--SLDLLL 180 (408)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCceEEe-c--------cHHHHHHHHHHHHHh----------hhHHHHHHhh--ccCeee
Confidence 599999999999998877776443333 1 333444455554432 2345566665 344889
Q ss_pred EeCCCCh-------hhhhHhhCCCCCCCCCCeEEEEecc---------hhHHhhCCCCCeeecCCCChhhhHHHHHHHhc
Q 040234 82 IDDAAHP-------DHLRRLVGEPDWFGPGSRIIITTRN---------EHLLKLHPVKKVYKLEALTYDEAFRLLCLKAF 145 (377)
Q Consensus 82 LDdv~~~-------~~~~~l~~~l~~~~~gs~IIvTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 145 (377)
+||++-. +.+-.+...+. ..|..||+|++. +.+..++..+-++++.+++.+....++.+++.
T Consensus 181 IDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 181 IDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred echHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 9998641 11212222222 234489999964 34445556678899999999999999998764
Q ss_pred CCCC--CchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 146 DTHK--PLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 146 ~~~~--~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
...- +.+...-++..+-+...- +.-|+..+..
T Consensus 259 ~~~~~i~~ev~~~la~~~~~nvRe--LegaL~~l~~ 292 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDRNVRE--LEGALNRLDA 292 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhccHHH--HHHHHHHHHH
Confidence 3322 222233344444444444 4445544444
No 70
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0014 Score=66.06 Aligned_cols=91 Identities=9% Similarity=-0.021 Sum_probs=56.9
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecc-hhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRN-EHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|||+++.. +..+.|+..+..-.....+|++|.+ ..+... ......+++.+++.++..+.+...+......
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 45669999999763 4556666555432345556655544 444322 2335678999999999998888766432211
Q ss_pred chhHHHHHHHHHHHhCC
Q 040234 151 LEEYVELAESVVRICHC 167 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G 167 (377)
...+.+..|++..+|
T Consensus 198 --id~eal~lIA~~s~G 212 (624)
T PRK14959 198 --YDPAAVRLIARRAAG 212 (624)
T ss_pred --CCHHHHHHHHHHcCC
Confidence 124566777777777
No 71
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0017 Score=65.11 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=58.0
Q ss_pred ceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEe-cchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCCc
Q 040234 76 KKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITT-RNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPL 151 (377)
Q Consensus 76 k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 151 (377)
++-++|+|+++. ...++.|+..+..-.....+|++| ....+... ......+++.++++++....+...+......-
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I 198 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI 198 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 344799999976 344555555443323445555444 44444332 23456889999999999988887764322111
Q ss_pred hhHHHHHHHHHHHhCCCCchhh
Q 040234 152 EEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 152 ~~~~~~~~~I~~~c~G~~lpla 173 (377)
..+.+..|++.++| .+..
T Consensus 199 --s~eal~~La~lS~G--dlR~ 216 (605)
T PRK05896 199 --EDNAIDKIADLADG--SLRD 216 (605)
T ss_pred --CHHHHHHHHHHcCC--cHHH
Confidence 14567788888988 6653
No 72
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.42 E-value=0.00051 Score=59.98 Aligned_cols=67 Identities=22% Similarity=0.052 Sum_probs=42.2
Q ss_pred EEEEecchhHHhhCCC--CCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 107 IIITTRNEHLLKLHPV--KKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 107 IIvTTR~~~v~~~~~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
|=.|||...+...+.. .-..+++..+.+|-.++..+.+..-. .+-.++.+.+|++++.| -|--..-+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrG--tPRiAnrl 221 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRG--TPRIANRL 221 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTT--SHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCC--ChHHHHHH
Confidence 4468887655444433 23457999999999999988774332 23336789999999999 88755433
No 73
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.42 E-value=0.0013 Score=59.88 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=40.9
Q ss_pred EEEEEeCCCC----------hhhhhHhhCCCCCCCCCCeEEEEecchhH----------HhhCCCCCeeecCCCChhhhH
Q 040234 78 VLVVIDDAAH----------PDHLRRLVGEPDWFGPGSRIIITTRNEHL----------LKLHPVKKVYKLEALTYDEAF 137 (377)
Q Consensus 78 ~LLVLDdv~~----------~~~~~~l~~~l~~~~~gs~IIvTTR~~~v----------~~~~~~~~~~~l~~L~~~ea~ 137 (377)
-+|+||++.. .+..+.++..+........+|+++..... ..+ -...+++++++.++-.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELM 184 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHH
Confidence 4889999964 23445555554433333355555543221 111 1346889999999999
Q ss_pred HHHHHHhcC
Q 040234 138 RLLCLKAFD 146 (377)
Q Consensus 138 ~L~~~~~~~ 146 (377)
+++.+.+..
T Consensus 185 ~Il~~~~~~ 193 (261)
T TIGR02881 185 EIAERMVKE 193 (261)
T ss_pred HHHHHHHHH
Confidence 999877743
No 74
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0032 Score=63.45 Aligned_cols=94 Identities=15% Similarity=0.032 Sum_probs=59.8
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEE-EEecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRII-ITTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~II-vTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|++.. .+..+.|+..+..-.....+| +||....+...+ .....+++.+++.++..+.+.+.+......
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 4555899999975 445666666555434455555 455545544332 336789999999999998887766432211
Q ss_pred chhHHHHHHHHHHHhCCCCchh
Q 040234 151 LEEYVELAESVVRICHCQKSTL 172 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpl 172 (377)
...+.+..|++..+| .+-
T Consensus 197 --i~~~al~~Ia~~s~G--dlR 214 (584)
T PRK14952 197 --VDDAVYPLVIRAGGG--SPR 214 (584)
T ss_pred --CCHHHHHHHHHHcCC--CHH
Confidence 123556777888888 654
No 75
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.39 E-value=0.0027 Score=66.51 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEe-cchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITT-RNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|||+++. .+..+.|+..+..-...+.+|++| ....+...+ .....+++..++.++..+.+.+..-....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv- 197 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV- 197 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence 4556899999986 345566665555434555655544 444454433 34678999999999999888776532221
Q ss_pred chhHHHHHHHHHHHhCCCCchhh
Q 040234 151 LEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpla 173 (377)
....+....|++.++| .+..
T Consensus 198 -~id~eal~lLa~~sgG--dlR~ 217 (824)
T PRK07764 198 -PVEPGVLPLVIRAGGG--SVRD 217 (824)
T ss_pred -CCCHHHHHHHHHHcCC--CHHH
Confidence 1124456778888888 6643
No 76
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.0033 Score=63.67 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=62.1
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEe-cchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITT-RNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|++... ...+.|+..+..-.+.+++|++| ....+...+ .....++++.+++++..+.+.+.+......
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 34557999999763 44666665554334566665544 444443332 345789999999999999988876432211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
...+.+..|++.++| .+.-+.
T Consensus 211 --i~~eAl~lIa~~a~G--dlr~al 231 (598)
T PRK09111 211 --VEDEALALIARAAEG--SVRDGL 231 (598)
T ss_pred --CCHHHHHHHHHHcCC--CHHHHH
Confidence 124567888888988 765543
No 77
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.33 E-value=0.0055 Score=56.41 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=42.1
Q ss_pred eEEEEEeCCCCh-----------hhhhHhhCCCCCCCCCCeEEEEecchhHHhh--C------CCCCeeecCCCChhhhH
Q 040234 77 KVLVVIDDAAHP-----------DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL--H------PVKKVYKLEALTYDEAF 137 (377)
Q Consensus 77 ~~LLVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~--~------~~~~~~~l~~L~~~ea~ 137 (377)
.-+|+||++... +..+.|...+.....+.+||+++.....-.. . .-...+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358999998621 2234444444333445567777653321111 0 11356899999999999
Q ss_pred HHHHHHhcC
Q 040234 138 RLLCLKAFD 146 (377)
Q Consensus 138 ~L~~~~~~~ 146 (377)
+++...+-.
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 998877643
No 78
>PRK08116 hypothetical protein; Validated
Probab=97.33 E-value=0.00054 Score=62.50 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=49.3
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||.||..+++.+..+....+++ +...++..+....... . ......+.+.+.+-. |||
T Consensus 123 ~GtGKThLa~aia~~l~~~~~~v~~~-----------~~~~ll~~i~~~~~~~------~-~~~~~~~~~~l~~~d-lLv 183 (268)
T PRK08116 123 VGTGKTYLAACIANELIEKGVPVIFV-----------NFPQLLNRIKSTYKSS------G-KEDENEIIRSLVNAD-LLI 183 (268)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEE-----------EHHHHHHHHHHHHhcc------c-cccHHHHHHHhcCCC-EEE
Confidence 69999999999999776553233333 3334444444433211 0 111223334445444 899
Q ss_pred EeCCC--Chhhhh--HhhCCCCCC-CCCCeEEEEecch
Q 040234 82 IDDAA--HPDHLR--RLVGEPDWF-GPGSRIIITTRNE 114 (377)
Q Consensus 82 LDdv~--~~~~~~--~l~~~l~~~-~~gs~IIvTTR~~ 114 (377)
|||+. ....|. .+..-+... ..+..+|+||...
T Consensus 184 iDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 184 LDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 99993 222222 122111111 3456789998753
No 79
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.002 Score=62.30 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=61.2
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEe-cchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITT-RNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|++... +.++.++..+..-.+.+.+|++| +...+...+ .....+++.++++++..+.+...+.....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~- 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI- 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 34568899999763 45666665555434566665554 444443322 22456889999999999888877632221
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
.-..+.+..|++.++| .+--+
T Consensus 205 -~i~~~al~~l~~~s~g--~lr~a 225 (397)
T PRK14955 205 -SVDADALQLIGRKAQG--SMRDA 225 (397)
T ss_pred -CCCHHHHHHHHHHcCC--CHHHH
Confidence 1225678889999999 77544
No 80
>PRK04132 replication factor C small subunit; Provisional
Probab=97.30 E-value=0.006 Score=63.76 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=87.5
Q ss_pred CCCCcHHHHHHHHHchh-ccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLI-SHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~-~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
+.++||||+|..+++++ .+.+...+.-.+.++.. ++. .++.++.......+. -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r----gid-~IR~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDER----GIN-VIREKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc----cHH-HHHHHHHHHHhcCCc---------------CCCCCEE
Confidence 35799999999999976 33333333322243321 233 334444332211100 0124569
Q ss_pred EEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHH
Q 040234 80 VVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYV 155 (377)
Q Consensus 80 LVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~ 155 (377)
+|||+++.. ++.+.|+..+..-...+++|+++... .+...+ +....+.+.+++.++..+.+.+.+-...-. -.+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCH
Confidence 999999874 45566655554334566666665543 333332 446789999999999998887766322111 124
Q ss_pred HHHHHHHHHhCCCCchhh
Q 040234 156 ELAESVVRICHCQKSTLN 173 (377)
Q Consensus 156 ~~~~~I~~~c~G~~lpla 173 (377)
+....|++.++| -+..
T Consensus 712 e~L~~Ia~~s~G--DlR~ 727 (846)
T PRK04132 712 EGLQAILYIAEG--DMRR 727 (846)
T ss_pred HHHHHHHHHcCC--CHHH
Confidence 578899999999 6644
No 81
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.017 Score=53.87 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=61.9
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|||+++.. +..+.|+..+..-.+++.+|++|.. ..+...+ +....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 35568999999863 3455555544433557777777765 3344333 446788999999999998886531 1
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
. .+.+..++..++| .|+......
T Consensus 187 ~---~~~a~~~~~l~~G--~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARG--HPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCC--CHHHHHHHh
Confidence 1 2336678999999 998765443
No 82
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0049 Score=59.02 Aligned_cols=94 Identities=9% Similarity=0.058 Sum_probs=56.6
Q ss_pred ceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEe-cchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCCc
Q 040234 76 KKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITT-RNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPL 151 (377)
Q Consensus 76 k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 151 (377)
++-++++|+++.. ..++.++..+......+.+|++| +...+... ......+++.++++++....+...+....-.
T Consensus 108 ~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~- 186 (367)
T PRK14970 108 KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK- 186 (367)
T ss_pred CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-
Confidence 4458999998753 34555544433223345555555 33333222 2334578999999999998888766432211
Q ss_pred hhHHHHHHHHHHHhCCCCchhh
Q 040234 152 EEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 152 ~~~~~~~~~I~~~c~G~~lpla 173 (377)
-..+.+..|++.++| .+-.
T Consensus 187 -i~~~al~~l~~~~~g--dlr~ 205 (367)
T PRK14970 187 -FEDDALHIIAQKADG--ALRD 205 (367)
T ss_pred -CCHHHHHHHHHhCCC--CHHH
Confidence 124677888888888 5553
No 83
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0022 Score=65.07 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=58.3
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEE-EecchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIII-TTRNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIv-TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. ...+.|+..+..-.+.+.+|+ |++...+... ......+++.+++.++....+.+.+......
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34557899999763 345556555543234455544 4444444433 2446789999999999888887765322211
Q ss_pred chhHHHHHHHHHHHhCCCCchh
Q 040234 151 LEEYVELAESVVRICHCQKSTL 172 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpl 172 (377)
-..+.+..|++.++| ..-
T Consensus 206 --I~~eal~~La~~s~G--dlr 223 (620)
T PRK14954 206 --IDADALQLIARKAQG--SMR 223 (620)
T ss_pred --CCHHHHHHHHHHhCC--CHH
Confidence 124567788888888 554
No 84
>PF14516 AAA_35: AAA-like domain
Probab=97.25 E-value=0.013 Score=55.18 Aligned_cols=172 Identities=11% Similarity=0.062 Sum_probs=94.0
Q ss_pred CCcHHHHHHHHHchhccccccceEEecchhhcc-cccCHHHHHHHHHHHHhhccccC----------ccchhhhHHHHHH
Q 040234 3 GLGKTTLARVVYDLISHEFDGSSFLADVREKCD-KEGSVISLQKQLLSDLLKLADNN----------IRNVYDGINMLRV 71 (377)
Q Consensus 3 GiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~~----------~~~~~~~~~~l~~ 71 (377)
.+|||+|...+.+..++.=-..+++. +..... ...+....++.+...+....... ..+.......+.+
T Consensus 41 q~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~ 119 (331)
T PF14516_consen 41 QMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEE 119 (331)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHH
Confidence 58999999999986654312233443 554321 22256666666666654332211 1122223333444
Q ss_pred Hh---cCceEEEEEeCCCChhh----hhHhhCCCC----C---C-CCCC-e-EEEEecchhHHhh-----CCCCCeeecC
Q 040234 72 RL---RRKKVLVVIDDAAHPDH----LRRLVGEPD----W---F-GPGS-R-IIITTRNEHLLKL-----HPVKKVYKLE 129 (377)
Q Consensus 72 ~l---~~k~~LLVLDdv~~~~~----~~~l~~~l~----~---~-~~gs-~-IIvTTR~~~v~~~-----~~~~~~~~l~ 129 (377)
.+ .+++.+|+||+++..-. ...+...+. . . .... + |++.+........ ......++|+
T Consensus 120 ~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~ 199 (331)
T PF14516_consen 120 YLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELP 199 (331)
T ss_pred HHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCC
Confidence 32 25899999999975211 111111110 0 0 0111 1 2222211111111 1335678999
Q ss_pred CCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhhhc
Q 040234 130 ALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYTVS 183 (377)
Q Consensus 130 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~~ 183 (377)
+++.+|..+|+.++-.. .. ....++|....|| +|.-+..+...+..
T Consensus 200 ~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgG--hP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 200 DFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGG--HPYLVQKACYLLVE 245 (331)
T ss_pred CCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCC--CHHHHHHHHHHHHH
Confidence 99999999998776422 11 2238899999999 99888887777644
No 85
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0088 Score=59.25 Aligned_cols=97 Identities=13% Similarity=0.071 Sum_probs=59.7
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEE-EecchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIII-TTRNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIv-TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. +..+.|+..+..-.+...+|+ ||+...+... ......+.+.+++.++....+...+-...-
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi- 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI- 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45669999999753 345555555443334455554 4444333322 233567899999999999888876643221
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
....+.+..|++.++| .+..+.
T Consensus 197 -~id~~al~~La~~s~G--~lr~al 218 (486)
T PRK14953 197 -EYEEKALDLLAQASEG--GMRDAA 218 (486)
T ss_pred -CCCHHHHHHHHHHcCC--CHHHHH
Confidence 1124567788888888 665443
No 86
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0075 Score=61.35 Aligned_cols=98 Identities=12% Similarity=0.036 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|||+++. .+..+.|+..+..-...+.+|++|.+ ..+...+ .....+++..++.++..+.+...+......
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3566899999975 34566665554433445666655543 3333322 335678899999999998888776433211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALM 176 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~ 176 (377)
...+.+..|++.++| .+..+..
T Consensus 199 --i~~eal~~La~~s~G--dlr~al~ 220 (585)
T PRK14950 199 --LEPGALEAIARAATG--SMRDAEN 220 (585)
T ss_pred --CCHHHHHHHHHHcCC--CHHHHHH
Confidence 124567888999999 7765443
No 87
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.0085 Score=59.64 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=61.1
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|++.. .+..+.|+..+..-.+.+++|++|.+. .+...+ .....+++.+++.++..+.+...+......
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3456899999976 344555655544334566766666553 222211 235788999999999999888766432211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
..++.+..|++.++| .+.-+
T Consensus 196 --i~~~Al~~Ia~~s~G--dlR~a 215 (535)
T PRK08451 196 --YEPEALEILARSGNG--SLRDT 215 (535)
T ss_pred --CCHHHHHHHHHHcCC--cHHHH
Confidence 124677888888888 66443
No 88
>CHL00181 cbbX CbbX; Provisional
Probab=97.14 E-value=0.0098 Score=54.82 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=42.9
Q ss_pred EEEEEeCCCC-----------hhhhhHhhCCCCCCCCCCeEEEEecchhHHhh--------CCCCCeeecCCCChhhhHH
Q 040234 78 VLVVIDDAAH-----------PDHLRRLVGEPDWFGPGSRIIITTRNEHLLKL--------HPVKKVYKLEALTYDEAFR 138 (377)
Q Consensus 78 ~LLVLDdv~~-----------~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~ 138 (377)
-+|+||++.. .+....|...+.....+.+||+++....+... -.....+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 4999999864 22344444444433445677777754332110 0224578999999999999
Q ss_pred HHHHHhcC
Q 040234 139 LLCLKAFD 146 (377)
Q Consensus 139 L~~~~~~~ 146 (377)
++...+-.
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98887743
No 89
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.011 Score=60.58 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=59.8
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeE-EEEecchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRI-IITTRNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~I-IvTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|++.. ...+..|+..+..-.....+ ++|++...+... ......+++.+++.++..+.+...+......
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4566899999975 34566666554432334444 455555555433 2345789999999999998888765322211
Q ss_pred chhHHHHHHHHHHHhCCCCchhh
Q 040234 151 LEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpla 173 (377)
...+.+..|++.++| .+.-
T Consensus 197 --id~eAl~~LA~lS~G--slR~ 215 (725)
T PRK07133 197 --YEKNALKLIAKLSSG--SLRD 215 (725)
T ss_pred --CCHHHHHHHHHHcCC--CHHH
Confidence 113567788888888 6543
No 90
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.09 E-value=0.0022 Score=58.16 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=91.4
Q ss_pred CCCCcHHHHHHHHHchh--ccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh--cCc
Q 040234 1 MGGLGKTTLARVVYDLI--SHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL--RRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~--~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~k 76 (377)
++|.|||+-|+.+++++ .+-|++++.=.+.+... ++. +.++=.. +.........+.. ...
T Consensus 65 PpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gis-vvr~Kik-----------~fakl~~~~~~~~~~~~~ 128 (346)
T KOG0989|consen 65 PPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GIS-VVREKIK-----------NFAKLTVLLKRSDGYPCP 128 (346)
T ss_pred CCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----ccc-chhhhhc-----------CHHHHhhccccccCCCCC
Confidence 47999999999999854 34577776533333332 111 1100000 0000000000000 112
Q ss_pred e-EEEEEeCCCC--hhhhhHhhCCCCCCCCCCe-EEEEecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCCc
Q 040234 77 K-VLVVIDDAAH--PDHLRRLVGEPDWFGPGSR-IIITTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKPL 151 (377)
Q Consensus 77 ~-~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~-IIvTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 151 (377)
+ -.+|||+++. .+.|..|+..+......++ |+||+--..+...+ +....+..++|..++...-|...+.... .
T Consensus 129 ~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v 206 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG--V 206 (346)
T ss_pred cceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC--C
Confidence 3 4789999987 4678888776665455566 44555443332222 3356688999999999999888884433 2
Q ss_pred hhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 152 EEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 152 ~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
+-..+..+.|++.++| .|--|+.++-+
T Consensus 207 ~~d~~al~~I~~~S~G-dLR~Ait~Lqs 233 (346)
T KOG0989|consen 207 DIDDDALKLIAKISDG-DLRRAITTLQS 233 (346)
T ss_pred CCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 2235678899999998 45556544433
No 91
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.09 E-value=0.005 Score=49.22 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||++|+.+++...
T Consensus 6 ~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG 23 (132)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred cCCCCeeHHHHHHHhhcc
Confidence 379999999999999775
No 92
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.07 E-value=0.00069 Score=64.39 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=51.0
Q ss_pred CCCCcHHHHHHHHHchhcc-ccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccch-hhh----HHHHHHH-h
Q 040234 1 MGGLGKTTLARVVYDLISH-EFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNV-YDG----INMLRVR-L 73 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~----~~~l~~~-l 73 (377)
.+|+|||||++.+++.+.. +|+..+|+..+++.. ..+.++++.++..+.......+... ... .+..+.. -
T Consensus 176 ~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~---~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~ 252 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 252 (415)
T ss_pred CCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC---ccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999996554 488888888443421 1788888888544322211111111 111 1111121 3
Q ss_pred cCceEEEEEeCCCC
Q 040234 74 RRKKVLVVIDDAAH 87 (377)
Q Consensus 74 ~~k~~LLVLDdv~~ 87 (377)
.+++.+|++|++..
T Consensus 253 ~GkdVVLlIDEitR 266 (415)
T TIGR00767 253 HKKDVVILLDSITR 266 (415)
T ss_pred cCCCeEEEEEChhH
Confidence 57899999999865
No 93
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.015 Score=54.68 Aligned_cols=92 Identities=15% Similarity=0.057 Sum_probs=61.7
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++=++|+|+++. .+..+.|+..+..-.+++.+|++|.+. .+...+ +....+.+.+++.+++.+.+.+..+ .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~----~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT----M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC----C
Confidence 4566899999986 345566665555435566766666653 344332 4466789999999999988865431 1
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
+ .+.+..+++.++| .|....
T Consensus 183 ~---~~~a~~~~~la~G--~~~~Al 202 (334)
T PRK07993 183 S---QDALLAALRLSAG--APGAAL 202 (334)
T ss_pred C---HHHHHHHHHHcCC--CHHHHH
Confidence 1 2346788999999 997543
No 94
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.037 Score=51.78 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++=++|+|+++. .+..+.|+..+..-.+++.+|++|.+. .+...+ +....+.+.++++++..+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----
Confidence 4556888999987 345566666555435666777777654 444333 44678999999999999988876421
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
. ...+...++.++| .|+...
T Consensus 182 ~---~~~~~~~~~l~~g--~p~~A~ 201 (325)
T PRK06871 182 E---ISEILTALRINYG--RPLLAL 201 (325)
T ss_pred C---hHHHHHHHHHcCC--CHHHHH
Confidence 1 1235677889999 997443
No 95
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.03 E-value=0.012 Score=56.74 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=51.6
Q ss_pred CceEEEEEeCCCCh-------------h---hhhHhhCCCCCC--CCCCeEEEEecchhHHhh-C----CCCCeeecCCC
Q 040234 75 RKKVLVVIDDAAHP-------------D---HLRRLVGEPDWF--GPGSRIIITTRNEHLLKL-H----PVKKVYKLEAL 131 (377)
Q Consensus 75 ~k~~LLVLDdv~~~-------------~---~~~~l~~~l~~~--~~gs~IIvTTR~~~v~~~-~----~~~~~~~l~~L 131 (377)
..+.+|+||+++.. + .+..++..+... ..+..||.||........ + .-...+++++.
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 45689999998752 1 122233222211 234567777765432111 1 22457899999
Q ss_pred ChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 132 TYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 132 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
+.++-.++|..+.....-... .....+++.+.|
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g 335 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADD---VDLEELAELTEG 335 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCC
Confidence 999999999887643221111 124567777777
No 96
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.0083 Score=61.18 Aligned_cols=96 Identities=13% Similarity=0.075 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEec-chhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTR-NEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++. .+..+.|+..+..-.....+|++|. ...+...+ .....+++..++.++....+.+.+......
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 3456899999986 3456666665543334455554444 33333322 345678889999999888887766432211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
...+.+..|++.++| .+..+
T Consensus 200 --is~~al~~La~~s~G--~lr~A 219 (620)
T PRK14948 200 --IEPEALTLVAQRSQG--GLRDA 219 (620)
T ss_pred --CCHHHHHHHHHHcCC--CHHHH
Confidence 113567888888988 66544
No 97
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.026 Score=52.63 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=61.8
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|+|+++. .+..+.|+..+..-.+++.+|++|.+. .+...+ +....+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--
Confidence 3455899999986 345666666555435567766666554 444443 446789999999999998886532 1
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
. .+..+++.++| .|+......
T Consensus 182 ~-----~~~~~l~l~~G--~p~~A~~~~ 202 (319)
T PRK06090 182 T-----VPAYALKLNMG--SPLKTLAMM 202 (319)
T ss_pred c-----hHHHHHHHcCC--CHHHHHHHh
Confidence 1 13467899999 998765543
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.97 E-value=0.0087 Score=61.13 Aligned_cols=111 Identities=15% Similarity=-0.011 Sum_probs=63.3
Q ss_pred hHHHHHHHhcCceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEE--EecchhH-HhhC-CCCCeeecCCCChhhhHH
Q 040234 65 GINMLRVRLRRKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIII--TTRNEHL-LKLH-PVKKVYKLEALTYDEAFR 138 (377)
Q Consensus 65 ~~~~l~~~l~~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIv--TTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~ 138 (377)
.+..+.+.+.+++++++.|+.|.. ..|+.+...+....+...+++ ||++... ...+ .....+.+.+++.++.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 456677777777777776665543 335555544444344444554 5664321 1111 223467899999999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 139 LLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 139 L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
++.+.+....... .+++.+.|.+.... -+-++..+..
T Consensus 361 Il~~~a~~~~v~l--s~eal~~L~~ys~~--gRraln~L~~ 397 (615)
T TIGR02903 361 IVLNAAEKINVHL--AAGVEELIARYTIE--GRKAVNILAD 397 (615)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHCCCc--HHHHHHHHHH
Confidence 9998774322111 13455556555555 5666654443
No 99
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0099 Score=60.59 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=56.5
Q ss_pred ceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEE-EecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCCc
Q 040234 76 KKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIII-TTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKPL 151 (377)
Q Consensus 76 k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIv-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 151 (377)
++-++|+|++... +..+.|+..+..-...+.+|+ ||+...+...+ .....+++.+++.++....+.+.+....-.
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~- 199 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT- 199 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-
Confidence 4558899999763 445566555543334555554 54545554432 446789999999999998888766432211
Q ss_pred hhHHHHHHHHHHHhCC
Q 040234 152 EEYVELAESVVRICHC 167 (377)
Q Consensus 152 ~~~~~~~~~I~~~c~G 167 (377)
...+.+..|++.+||
T Consensus 200 -i~~~al~~La~~s~g 214 (614)
T PRK14971 200 -AEPEALNVIAQKADG 214 (614)
T ss_pred -CCHHHHHHHHHHcCC
Confidence 113456777777777
No 100
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.90 E-value=0.0037 Score=50.06 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=19.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
.+|+||||+|+.++..........+++
T Consensus 10 ~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 10 PPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 379999999999999766554233333
No 101
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.90 E-value=0.021 Score=56.08 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=58.3
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEec-chhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTR-NEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. +..+.|+..+..-.....+|++|. ...+...+ .....+++.++++++..+.+...+.....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~- 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI- 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999998753 344555555444344556665553 33333222 33567899999999999888876633211
Q ss_pred chhHHHHHHHHHHHhCCCCchh
Q 040234 151 LEEYVELAESVVRICHCQKSTL 172 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpl 172 (377)
....+.+..|++.++| ...
T Consensus 199 -~i~~~al~~L~~~s~g--dlr 217 (451)
T PRK06305 199 -ETSREALLPIARAAQG--SLR 217 (451)
T ss_pred -CCCHHHHHHHHHHcCC--CHH
Confidence 1124567888888888 554
No 102
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.87 E-value=0.026 Score=56.96 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=60.5
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEec-chhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTR-NEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|++.. ...++.|+..+..-.+...+|.+|. ...+...+ .....+++.+++.++..+.+.+.+......
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4556899999876 3456677666654344556655554 34443322 335678999999999988888766332211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal 174 (377)
..++.+..|++.++| .+..+
T Consensus 198 --id~eAl~lLa~~s~G--dlR~a 217 (563)
T PRK06647 198 --YEDEALKWIAYKSTG--SVRDA 217 (563)
T ss_pred --CCHHHHHHHHHHcCC--CHHHH
Confidence 124567778888888 66533
No 103
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.85 E-value=0.012 Score=62.44 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=64.5
Q ss_pred CceEEEEEeCC-CCh-hh---hhHhhCCCCC-CCCCCeEEE--Eecch--hHHhhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 75 RKKVLVVIDDA-AHP-DH---LRRLVGEPDW-FGPGSRIII--TTRNE--HLLKLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 75 ~k~~LLVLDdv-~~~-~~---~~~l~~~l~~-~~~gs~IIv--TTR~~--~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
.++.++|+||+ |-+ .. ++.+.....- ......|.. |.+.. .+-........+.|.||+..+...|.....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 45999999998 332 22 2233222210 000112332 33322 222223446789999999999999998888
Q ss_pred cCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhhhc
Q 040234 145 FDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYTVS 183 (377)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~~ 183 (377)
+...... .+....|.++..| +|+-+...-..++.
T Consensus 233 ~~~~~~~---~p~~~~i~~kt~G--nPfFi~e~lk~l~~ 266 (849)
T COG3899 233 GCTKLLP---APLLELIFEKTKG--NPFFIEEFLKALYE 266 (849)
T ss_pred CCccccc---chHHHHHHHHhcC--CCccHHHHHHHHHh
Confidence 5533222 4567899999999 99999888887654
No 104
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.84 E-value=0.027 Score=51.58 Aligned_cols=167 Identities=15% Similarity=-0.017 Sum_probs=89.9
Q ss_pred CCCcHHHHHHHHHchhccccccc-----eEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcC-
Q 040234 2 GGLGKTTLARVVYDLISHEFDGS-----SFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRR- 75 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~-----~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~- 75 (377)
+|.|||++++++.+.....++.. +++....... +...+...|+.+++..... ..+...........++.
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p----~~~~~Y~~IL~~lgaP~~~-~~~~~~~~~~~~~llr~~ 144 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP----DERRFYSAILEALGAPYRP-RDRVAKLEQQVLRLLRRL 144 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC----ChHHHHHHHHHHhCcccCC-CCCHHHHHHHHHHHHHHc
Confidence 68999999999998554444311 3333232222 8899999999998765332 23444444444555554
Q ss_pred ceEEEEEeCCCCh-----hhhh---HhhCCCCCCCCCCeEEEEecchhHHhhC-----CCCCeeecCCCChhh-hHHHHH
Q 040234 76 KKVLVVIDDAAHP-----DHLR---RLVGEPDWFGPGSRIIITTRNEHLLKLH-----PVKKVYKLEALTYDE-AFRLLC 141 (377)
Q Consensus 76 k~~LLVLDdv~~~-----~~~~---~l~~~l~~~~~gs~IIvTTR~~~v~~~~-----~~~~~~~l~~L~~~e-a~~L~~ 141 (377)
+--+||+|++-+. .+-+ ..+..+.+.-.=+-|.+-|++-.-+-.. +....+.++.-..++ ...|+.
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~ 224 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLA 224 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHH
Confidence 4558999998652 1111 1112222212334566666543221111 113445555544433 344443
Q ss_pred HHhc---CCCCCchhHHHHHHHHHHHhCCCCchhhHH
Q 040234 142 LKAF---DTHKPLEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 142 ~~~~---~~~~~~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
.... ......-...++++.|...++| +.-.+.
T Consensus 225 s~e~~LPLr~~S~l~~~~la~~i~~~s~G--~iG~l~ 259 (302)
T PF05621_consen 225 SFERALPLRKPSNLASPELARRIHERSEG--LIGELS 259 (302)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHcCC--chHHHH
Confidence 3221 1112223447889999999999 665543
No 105
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.82 E-value=0.0039 Score=56.53 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=32.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
+|+|||+||+++++.++.+|+..+++..+++..+ .+.++.+.+..
T Consensus 78 ~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~---Ev~e~~~~~~~ 122 (274)
T cd01133 78 AGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR---EGNDLYHEMKE 122 (274)
T ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH---HHHHHHHHHHh
Confidence 6999999999999988878887777776666532 44455555443
No 106
>CHL00176 ftsH cell division protein; Validated
Probab=96.81 E-value=0.026 Score=57.71 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=76.8
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++++.... ++. ++. .++.... .+. ......+.+.+.....+.+|
T Consensus 224 PpGTGKT~LAralA~e~~~p-----~i~-is~--------s~f~~~~----~g~------~~~~vr~lF~~A~~~~P~IL 279 (638)
T CHL00176 224 PPGTGKTLLAKAIAGEAEVP-----FFS-ISG--------SEFVEMF----VGV------GAARVRDLFKKAKENSPCIV 279 (638)
T ss_pred CCCCCHHHHHHHHHHHhCCC-----eee-ccH--------HHHHHHh----hhh------hHHHHHHHHHHHhcCCCcEE
Confidence 47999999999999865322 222 211 1111110 000 11122334445556678999
Q ss_pred EEeCCCCh----------------hhhhHhhCCCCCC--CCCCeEEEEecchhHHhh-C----CCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHP----------------DHLRRLVGEPDWF--GPGSRIIITTRNEHLLKL-H----PVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~----------------~~~~~l~~~l~~~--~~gs~IIvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~ 137 (377)
+||+++.. ..+..++..+... ..+-.||.||........ + .-...+.++..+.++-.
T Consensus 280 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~ 359 (638)
T CHL00176 280 FIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRL 359 (638)
T ss_pred EEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHH
Confidence 99999642 1233444333211 234456666665433221 1 23467889999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 138 RLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 138 ~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
++|+.++..... . .......+++.+.|
T Consensus 360 ~IL~~~l~~~~~-~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 360 DILKVHARNKKL-S--PDVSLELIARRTPG 386 (638)
T ss_pred HHHHHHHhhccc-c--hhHHHHHHHhcCCC
Confidence 999887743211 1 12345677777776
No 107
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.011 Score=57.08 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=47.6
Q ss_pred ceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHH-----hhC-CCCCeeecCCCChhhhHHH
Q 040234 76 KKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLL-----KLH-PVKKVYKLEALTYDEAFRL 139 (377)
Q Consensus 76 k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~-----~~~-~~~~~~~l~~L~~~ea~~L 139 (377)
++.+++||.|.....|...+..+.+.++. +|++|+-+.... ... +....+++-||+-.|-..+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 77899999999999998877777665665 788888765432 222 3367789999999888664
No 108
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.028 Score=56.83 Aligned_cols=95 Identities=11% Similarity=0.038 Sum_probs=58.5
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEE-EecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIII-TTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIv-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
++.-++|+|++.. ...++.|+..+..-.....+|+ ||....+...+ .....+++.+++.++..+.+...+....-.
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566889999986 3456666655543233444444 44444433322 335678899999999998888766432211
Q ss_pred chhHHHHHHHHHHHhCCCCchhh
Q 040234 151 LEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lpla 173 (377)
...+.+..|++.++| -+..
T Consensus 198 --i~~~al~~ia~~s~G--~~R~ 216 (559)
T PRK05563 198 --YEDEALRLIARAAEG--GMRD 216 (559)
T ss_pred --CCHHHHHHHHHHcCC--CHHH
Confidence 124567778888887 6543
No 109
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.078 Score=49.54 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=60.6
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. ...+.|+..+..-. .+.+|++|.+ ..+...+ +....+++.++++++..+.+.+..... .
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~ 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--c
Confidence 45668999999763 34555554443323 4455555544 4443333 446889999999999999998765211 1
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
.. .....++...+| .|..+.....
T Consensus 200 ~~---~~~~~l~~~a~G--s~~~al~~l~ 223 (314)
T PRK07399 200 LN---INFPELLALAQG--SPGAAIANIE 223 (314)
T ss_pred ch---hHHHHHHHHcCC--CHHHHHHHHH
Confidence 11 113578899999 9976654433
No 110
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.77 E-value=0.025 Score=56.42 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+|||+||+.+++...-.| +. ++ ...+.. ...+. ......+.+.......+.+|
T Consensus 96 ppGtGKT~la~alA~~~~~~~-----~~-i~--------~~~~~~----~~~g~------~~~~l~~~f~~a~~~~p~Il 151 (495)
T TIGR01241 96 PPGTGKTLLAKAVAGEAGVPF-----FS-IS--------GSDFVE----MFVGV------GASRVRDLFEQAKKNAPCII 151 (495)
T ss_pred CCCCCHHHHHHHHHHHcCCCe-----ee-cc--------HHHHHH----HHhcc------cHHHHHHHHHHHHhcCCCEE
Confidence 479999999999998643322 21 21 111111 11110 11122333444444567899
Q ss_pred EEeCCCChh----------------hhhHhhCCCCCC--CCCCeEEEEecchhH-----HhhCCCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHPD----------------HLRRLVGEPDWF--GPGSRIIITTRNEHL-----LKLHPVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~~----------------~~~~l~~~l~~~--~~gs~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~ 137 (377)
+||+++... .+..++..+... ..+-.||.||..... .+...-...+.++..+.++-.
T Consensus 152 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~ 231 (495)
T TIGR01241 152 FIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGRE 231 (495)
T ss_pred EEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHH
Confidence 999985421 122333322211 223456666655431 111123567889999998889
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 138 RLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 138 ~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
++|..+........ ......+++.+.|
T Consensus 232 ~il~~~l~~~~~~~---~~~l~~la~~t~G 258 (495)
T TIGR01241 232 EILKVHAKNKKLAP---DVDLKAVARRTPG 258 (495)
T ss_pred HHHHHHHhcCCCCc---chhHHHHHHhCCC
Confidence 99887764322111 1234578888877
No 111
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.73 E-value=0.012 Score=55.04 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=37.3
Q ss_pred ceEEEEEeCCCCh---hhhhHhhCCCCCCCCCCeEEEEecchh-HHhhC-CCCCeeecCCCChhhhHHHHHH
Q 040234 76 KKVLVVIDDAAHP---DHLRRLVGEPDWFGPGSRIIITTRNEH-LLKLH-PVKKVYKLEALTYDEAFRLLCL 142 (377)
Q Consensus 76 k~~LLVLDdv~~~---~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 142 (377)
.+-+||+|+++.. +....+...+.....++++|+||.... +...+ +....+.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 3458899999754 222222222222245678888886542 11111 2234677778888887766543
No 112
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.72 E-value=0.02 Score=55.25 Aligned_cols=140 Identities=15% Similarity=0.099 Sum_probs=72.7
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.+++.....| +.+. . . .+ .....+. ......+.+.......+.+|
T Consensus 187 ppGTGKT~LAkalA~~l~~~f---i~i~-~-s---------~l----~~k~~ge------~~~~lr~lf~~A~~~~P~IL 242 (398)
T PTZ00454 187 PPGTGKTMLAKAVAHHTTATF---IRVV-G-S---------EF----VQKYLGE------GPRMVRDVFRLARENAPSII 242 (398)
T ss_pred CCCCCHHHHHHHHHHhcCCCE---EEEe-h-H---------HH----HHHhcch------hHHHHHHHHHHHHhcCCeEE
Confidence 479999999999998665443 1111 1 1 11 1111110 11112222333334578899
Q ss_pred EEeCCCCh-------------h---hhhHhhCCCCC--CCCCCeEEEEecchhHHhh--C---CCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHP-------------D---HLRRLVGEPDW--FGPGSRIIITTRNEHLLKL--H---PVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~-------------~---~~~~l~~~l~~--~~~gs~IIvTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~ 137 (377)
+||+++.. + .+..++..+.. ...+..||+||........ . .-...++++..+.++-.
T Consensus 243 fIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~ 322 (398)
T PTZ00454 243 FIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 322 (398)
T ss_pred EEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHH
Confidence 99997632 0 12233322221 1234567777775433211 1 23566889989999888
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 138 RLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 138 ~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
++|......... .+ .-...++++...|
T Consensus 323 ~Il~~~~~~~~l-~~--dvd~~~la~~t~g 349 (398)
T PTZ00454 323 LIFQTITSKMNL-SE--EVDLEDFVSRPEK 349 (398)
T ss_pred HHHHHHHhcCCC-Cc--ccCHHHHHHHcCC
Confidence 888766532211 11 1124566777777
No 113
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.017 Score=58.53 Aligned_cols=91 Identities=12% Similarity=0.052 Sum_probs=54.7
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEE-EecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIII-TTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIv-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. ...+.|+..+..-.....+|+ ||....+...+ .....+++.+++.++....+...+......
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 34558999999763 445556554443244555554 54445444332 345678899999999888887665322211
Q ss_pred chhHHHHHHHHHHHhCC
Q 040234 151 LEEYVELAESVVRICHC 167 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G 167 (377)
...+.+..|++.++|
T Consensus 198 --i~~~al~~la~~a~G 212 (576)
T PRK14965 198 --ISDAALALVARKGDG 212 (576)
T ss_pred --CCHHHHHHHHHHcCC
Confidence 113456667777777
No 114
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.66 E-value=0.025 Score=56.07 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=42.7
Q ss_pred CceEEEEEeCCCChh--------------hhhHhhCCCCCC--CCCCeEEEEecchhHHh-hC----CCCCeeecCCCCh
Q 040234 75 RKKVLVVIDDAAHPD--------------HLRRLVGEPDWF--GPGSRIIITTRNEHLLK-LH----PVKKVYKLEALTY 133 (377)
Q Consensus 75 ~k~~LLVLDdv~~~~--------------~~~~l~~~l~~~--~~gs~IIvTTR~~~v~~-~~----~~~~~~~l~~L~~ 133 (377)
+++.+|+||+++... .+..|+..+... ..+..||.||....... .+ .-...++++..+.
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 478999999997421 122333333221 13344555665443211 11 2245689999999
Q ss_pred hhhHHHHHHHhc
Q 040234 134 DEAFRLLCLKAF 145 (377)
Q Consensus 134 ~ea~~L~~~~~~ 145 (377)
++..++|..+..
T Consensus 368 e~r~~Il~~~l~ 379 (512)
T TIGR03689 368 EAAADIFSKYLT 379 (512)
T ss_pred HHHHHHHHHHhh
Confidence 999999998873
No 115
>PRK08181 transposase; Validated
Probab=96.62 E-value=0.0034 Score=57.12 Aligned_cols=27 Identities=22% Similarity=0.033 Sum_probs=19.1
Q ss_pred CCCCcHHHHHHHHHchhccccccceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
.+|+|||.||..+++...++...++|+
T Consensus 114 p~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 114 PPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 379999999999998665443333443
No 116
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.044 Score=51.64 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++. .+..+.|+..+..-.+++.+|++|.+ ..+...+ +....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 3455889999986 45566666665544566666655554 4444333 446789999999999999887642 1
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
.+ ...++..++| .|+.....
T Consensus 206 ~~-----~~~~l~~~~G--sp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGG--APLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCC--CHHHHHHH
Confidence 11 1235778899 99755433
No 117
>PRK06921 hypothetical protein; Provisional
Probab=96.47 E-value=0.0085 Score=54.59 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHchhccc-cccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHE-FDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~-f~~~~w~~ 28 (377)
.|+|||.||..+++.+.++ ...++++.
T Consensus 126 ~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 126 PGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 6999999999999977654 33445554
No 118
>PRK12377 putative replication protein; Provisional
Probab=96.45 E-value=0.007 Score=54.42 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
.|+|||+||..+++.+......++++
T Consensus 110 ~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 110 PGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 69999999999999776554334444
No 119
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.098 Score=46.52 Aligned_cols=170 Identities=16% Similarity=0.081 Sum_probs=88.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCcc-chhhhHHHHHHHh-cCce-E
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIR-NVYDGINMLRVRL-RRKK-V 78 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~l~~~l-~~k~-~ 78 (377)
-|.|||.+++.+....-+. ..+-+..-.+.. +...+...+...+......... ..+.....+.... ++++ .
T Consensus 60 vGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~----s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 60 VGSGKTVLRRALLASLNED--QVAVVVIDKPTL----SDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred CCCchhHHHHHHHHhcCCC--ceEEEEecCcch----hHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 3899999999555433221 111122111222 5556666676666542211111 1222222333333 3566 8
Q ss_pred EEEEeCCCC--hhhhh---HhhCCCCCCCCCCeEEEEecc--------hhHHhhCCCCCe-eecCCCChhhhHHHHHHHh
Q 040234 79 LVVIDDAAH--PDHLR---RLVGEPDWFGPGSRIIITTRN--------EHLLKLHPVKKV-YKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 79 LLVLDdv~~--~~~~~---~l~~~l~~~~~gs~IIvTTR~--------~~v~~~~~~~~~-~~l~~L~~~ea~~L~~~~~ 144 (377)
.+++|++.+ .+.++ .|...-......-+|+..-.- ............ |++.|++.++...++..+.
T Consensus 134 ~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~L 213 (269)
T COG3267 134 VLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRL 213 (269)
T ss_pred EEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHH
Confidence 999999865 23333 332222221222234433221 111111111233 8999999999888888776
Q ss_pred cCCCCC-chhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 145 FDTHKP-LEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 145 ~~~~~~-~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
.....+ .--..+....|.....| .|.++..+..
T Consensus 214 e~a~~~~~l~~~~a~~~i~~~sqg--~P~lin~~~~ 247 (269)
T COG3267 214 EGAGLPEPLFSDDALLLIHEASQG--IPRLINNLAT 247 (269)
T ss_pred hccCCCcccCChhHHHHHHHHhcc--chHHHHHHHH
Confidence 443222 22235677889999999 9999876554
No 120
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.37 E-value=0.0056 Score=50.91 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHhcCc-eEEEEEeCCCCh-----hhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 69 LRVRLRRK-KVLVVIDDAAHP-----DHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 69 l~~~l~~k-~~LLVLDdv~~~-----~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
.++.+... -=|||||++-.. -..+.+...+.....+..||+|.|+.
T Consensus 87 a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 87 AKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 34444443 459999997432 11222333333335567899999985
No 121
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.36 E-value=0.0089 Score=50.88 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+|||+|.+++..++..+
T Consensus 32 ~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999977666
No 122
>PRK06526 transposase; Provisional
Probab=96.34 E-value=0.0052 Score=55.55 Aligned_cols=19 Identities=32% Similarity=0.113 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+|||+||..+..+...
T Consensus 106 p~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CCCCchHHHHHHHHHHHHH
Confidence 3799999999999985543
No 123
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.34 E-value=0.026 Score=59.07 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=63.6
Q ss_pred CCCCcHHHHHHHHHchhccc-----c-ccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh-
Q 040234 1 MGGLGKTTLARVVYDLISHE-----F-DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL- 73 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~-----f-~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l- 73 (377)
.+|+|||+||+.+++++... + ...+|.. +...+... . ....+.++....+.+.+
T Consensus 211 ~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~----------~~~~l~a~-------~--~~~g~~e~~l~~i~~~~~ 271 (731)
T TIGR02639 211 EPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL----------DMGSLLAG-------T--KYRGDFEERLKAVVSEIE 271 (731)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe----------cHHHHhhh-------c--cccchHHHHHHHHHHHHh
Confidence 37999999999999965332 1 2334444 22222110 0 00011222222233222
Q ss_pred cCceEEEEEeCCCCh-----------hhhhHhhCCCCCCCCCCeEEEEecchhHHh------hC-CCCCeeecCCCChhh
Q 040234 74 RRKKVLVVIDDAAHP-----------DHLRRLVGEPDWFGPGSRIIITTRNEHLLK------LH-PVKKVYKLEALTYDE 135 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~------~~-~~~~~~~l~~L~~~e 135 (377)
..++.+|++|++... +.-+.|.+.+.. ..-++|-+|....... .. .....++++.++.++
T Consensus 272 ~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~ 349 (731)
T TIGR02639 272 KEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEE 349 (731)
T ss_pred ccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHH
Confidence 245789999998631 223334444321 1234454444321110 01 123578999999999
Q ss_pred hHHHHHHHh
Q 040234 136 AFRLLCLKA 144 (377)
Q Consensus 136 a~~L~~~~~ 144 (377)
..+++....
T Consensus 350 ~~~il~~~~ 358 (731)
T TIGR02639 350 TVKILKGLK 358 (731)
T ss_pred HHHHHHHHH
Confidence 999998654
No 124
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.076 Score=50.02 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=45.5
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHH
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCL 142 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~ 142 (377)
+.+=++|+|+++. .+..+.|+..+..-.+++.+|++|.++ .+...+ +....+++.+++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 3455799999976 334556665555435667777777653 333332 3467899999999999888865
No 125
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.24 E-value=0.041 Score=50.05 Aligned_cols=18 Identities=44% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||+||+.+++...
T Consensus 29 ~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998543
No 126
>PRK09183 transposase/IS protein; Provisional
Probab=96.22 E-value=0.0089 Score=54.27 Aligned_cols=18 Identities=33% Similarity=0.241 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||+||..++....
T Consensus 110 p~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 110 PSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 379999999999988543
No 127
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.20 E-value=0.015 Score=55.02 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=47.2
Q ss_pred CCCcHHHHHHHHHchhccccccc-eEEecchhhcccccCHHHHHHHHHHHHhhccccCccch--------hhhHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGS-SFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNV--------YDGINMLRVR 72 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~-~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~--------~~~~~~l~~~ 72 (377)
.|+|||||++.+++.+....+.. +.+.-+++.. ..+.++++.+...+........... .+.++.++.
T Consensus 142 pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~---~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~- 217 (380)
T PRK12608 142 PRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERP---EEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVE- 217 (380)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC---CCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 69999999999999776554433 3333244432 2677777777665443211111110 011122222
Q ss_pred hcCceEEEEEeCCCC
Q 040234 73 LRRKKVLVVIDDAAH 87 (377)
Q Consensus 73 l~~k~~LLVLDdv~~ 87 (377)
.+++.+||+|++..
T Consensus 218 -~GkdVVLvlDsltr 231 (380)
T PRK12608 218 -QGKDVVILLDSLTR 231 (380)
T ss_pred -cCCCEEEEEeCcHH
Confidence 57899999999854
No 128
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=0.16 Score=49.03 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=89.1
Q ss_pred CCCcHHHHHHHHHchhcccccc--ceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcC--ce
Q 040234 2 GGLGKTTLARVVYDLISHEFDG--SSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRR--KK 77 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~--~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--k~ 77 (377)
+|.|||.+...++.+....... .+++. ...-. ...+++..|...+....... ....+..+.+.+...+ ..
T Consensus 184 PGtgkt~~l~rvl~~~~~~~~~~~~v~in-c~sl~----~~~aiF~kI~~~~~q~~~s~-~~~~~~~~~~~~h~~q~k~~ 257 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDSLSKSSKSPVTVYIN-CTSLT----EASAIFKKIFSSLLQDLVSP-GTGMQHLEKFEKHTKQSKFM 257 (529)
T ss_pred CCcchHHHHHHHHHhhhhhcccceeEEEe-ecccc----chHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHhcccce
Confidence 6999999999999866655543 35555 33222 56677778877764332211 2224455556555554 36
Q ss_pred EEEEEeCCCChhh--hhHhhCCCCCC-CCCCeEEEEec--c----hhHHhhC-----CCCCeeecCCCChhhhHHHHHHH
Q 040234 78 VLVVIDDAAHPDH--LRRLVGEPDWF-GPGSRIIITTR--N----EHLLKLH-----PVKKVYKLEALTYDEAFRLLCLK 143 (377)
Q Consensus 78 ~LLVLDdv~~~~~--~~~l~~~l~~~-~~gs~IIvTTR--~----~~v~~~~-----~~~~~~~l~~L~~~ea~~L~~~~ 143 (377)
+|+|||.++.... -..+...+.|- -+++++|+.-- . ...+..+ -.-..+..+|.+.++..++|..+
T Consensus 258 ~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 258 LLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred EEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence 8999999986321 11111111111 34555554321 1 1111111 12456788999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHhCC
Q 040234 144 AFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
+.... ........++-+++++.|
T Consensus 338 l~~~~-t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 338 LSEES-TSIFLNAAIELCARKVAA 360 (529)
T ss_pred Hhccc-ccccchHHHHHHHHHhcc
Confidence 84332 222333445555666655
No 129
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.11 E-value=0.0081 Score=53.44 Aligned_cols=27 Identities=33% Similarity=0.550 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.|+|||+|...+.......|+...++.
T Consensus 22 sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 22 SGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 699999999999998888996665554
No 130
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.015 Score=52.22 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHHchhccccccceE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSF 26 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w 26 (377)
+|+|||+||..+++.+...-..+++
T Consensus 108 ~GtGKThLa~aia~~l~~~g~~v~~ 132 (244)
T PRK07952 108 PGTGKNHLAAAICNELLLRGKSVLI 132 (244)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 7999999999999976554333333
No 131
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.047 Score=51.24 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=40.0
Q ss_pred ceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecchh-HHhhC-CCCCeeecCCCChhhhHHHHHHH
Q 040234 76 KKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNEH-LLKLH-PVKKVYKLEALTYDEAFRLLCLK 143 (377)
Q Consensus 76 k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 143 (377)
++-++|+|++... +..+.++..+..-..+..+|++|.+.. +...+ +....+.+.+++.+++.+.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3345566887653 333333333222234566777777643 33332 34677899999999999888653
No 132
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.06 E-value=0.036 Score=58.15 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=73.7
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++++....| +. +.. ..+ +....+. +.....+.+...-...+.+|
T Consensus 495 ppGtGKT~lakalA~e~~~~f-----i~-v~~--------~~l----~~~~vGe------se~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 495 PPGTGKTLLAKAVATESGANF-----IA-VRG--------PEI----LSKWVGE------SEKAIREIFRKARQAAPAII 550 (733)
T ss_pred CCCCCHHHHHHHHHHhcCCCE-----EE-Eeh--------HHH----hhcccCc------HHHHHHHHHHHHHhcCCEEE
Confidence 479999999999999765443 11 211 111 1111111 11122233333334567899
Q ss_pred EEeCCCCh--------------hhhhHhhCCCCCC--CCCCeEEEEecchhHHhh-C----CCCCeeecCCCChhhhHHH
Q 040234 81 VIDDAAHP--------------DHLRRLVGEPDWF--GPGSRIIITTRNEHLLKL-H----PVKKVYKLEALTYDEAFRL 139 (377)
Q Consensus 81 VLDdv~~~--------------~~~~~l~~~l~~~--~~gs~IIvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~L 139 (377)
+||+++.. .....++..+... ..+-.||.||........ + .-...+.++..+.++-.++
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i 630 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEI 630 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHH
Confidence 99998632 1123333333211 233446666655433221 1 2356788999999998999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 140 LCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
|..+........ ......+++.+.|
T Consensus 631 ~~~~~~~~~~~~---~~~l~~la~~t~g 655 (733)
T TIGR01243 631 FKIHTRSMPLAE---DVDLEELAEMTEG 655 (733)
T ss_pred HHHHhcCCCCCc---cCCHHHHHHHcCC
Confidence 876653222111 1124567788887
No 133
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.06 E-value=0.019 Score=55.86 Aligned_cols=140 Identities=17% Similarity=0.108 Sum_probs=72.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++++....| +.+. .+. +. ....+. ......+.+.......+.+|
T Consensus 225 PPGTGKT~LAraIA~el~~~f---i~V~-~se----------L~----~k~~Ge------~~~~vr~lF~~A~~~~P~IL 280 (438)
T PTZ00361 225 PPGTGKTLLAKAVANETSATF---LRVV-GSE----------LI----QKYLGD------GPKLVRELFRVAEENAPSIV 280 (438)
T ss_pred CCCCCHHHHHHHHHHhhCCCE---EEEe-cch----------hh----hhhcch------HHHHHHHHHHHHHhCCCcEE
Confidence 479999999999999776554 1111 111 11 010010 01111222222334567888
Q ss_pred EEeCCCChh----------------hhhHhhCCCCC--CCCCCeEEEEecchhHHhh-C----CCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHPD----------------HLRRLVGEPDW--FGPGSRIIITTRNEHLLKL-H----PVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~~----------------~~~~l~~~l~~--~~~gs~IIvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~ 137 (377)
+||+++... .+..++..+.. ...+.+||+||........ + .....++++..+.++..
T Consensus 281 fIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~ 360 (438)
T PTZ00361 281 FIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKR 360 (438)
T ss_pred eHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHH
Confidence 999875310 11122222211 1235577877775443222 1 22567899999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 138 RLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 138 ~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
++|..+...-.-... -....++..+.|
T Consensus 361 ~Il~~~~~k~~l~~d---vdl~~la~~t~g 387 (438)
T PTZ00361 361 RIFEIHTSKMTLAED---VDLEEFIMAKDE 387 (438)
T ss_pred HHHHHHHhcCCCCcC---cCHHHHHHhcCC
Confidence 999877643221111 123456667766
No 134
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.058 Score=52.66 Aligned_cols=117 Identities=17% Similarity=0.120 Sum_probs=66.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHH----HHHHhcCc
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINM----LRVRLRRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----l~~~l~~k 76 (377)
.+|+|||+||..++. ...||-+-. ++.. ++. + .++...... +...-+..
T Consensus 546 p~~sGKTaLAA~iA~--~S~FPFvKi---iSpe--------~mi--------G------~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 546 PPGSGKTALAAKIAL--SSDFPFVKI---ISPE--------DMI--------G------LSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred CCCCChHHHHHHHHh--hcCCCeEEE---eChH--------Hcc--------C------ccHHHHHHHHHHHHHHhhcCc
Confidence 379999999999996 455664322 2221 110 0 011112222 22333455
Q ss_pred eEEEEEeCCCChhhh------------hHhhCCCCCC---CCCCeEEEEecchhHHhhCCC----CCeeecCCCCh-hhh
Q 040234 77 KVLVVIDDAAHPDHL------------RRLVGEPDWF---GPGSRIIITTRNEHLLKLHPV----KKVYKLEALTY-DEA 136 (377)
Q Consensus 77 ~~LLVLDdv~~~~~~------------~~l~~~l~~~---~~gs~IIvTTR~~~v~~~~~~----~~~~~l~~L~~-~ea 136 (377)
--.||+||++..-+| +.|+..+... ++.--|+-||..+.+...++- ...+.++.++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 678999998754333 2332222222 233345567777788877642 46788999887 677
Q ss_pred HHHHHHHh
Q 040234 137 FRLLCLKA 144 (377)
Q Consensus 137 ~~L~~~~~ 144 (377)
.+.+...-
T Consensus 679 ~~vl~~~n 686 (744)
T KOG0741|consen 679 LEVLEELN 686 (744)
T ss_pred HHHHHHcc
Confidence 77776543
No 135
>PRK10536 hypothetical protein; Provisional
Probab=95.93 E-value=0.053 Score=48.67 Aligned_cols=40 Identities=15% Similarity=0.393 Sum_probs=28.6
Q ss_pred HhcCceE---EEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 72 RLRRKKV---LVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 72 ~l~~k~~---LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
+++++.+ +||+|.+.+ ..+...++..+ +.+|++|+|--..
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~ 213 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDIT 213 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChh
Confidence 5566654 999999987 45566665554 6899999886543
No 136
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.93 E-value=0.043 Score=54.30 Aligned_cols=142 Identities=12% Similarity=0.088 Sum_probs=72.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+|||.+|+.++++..-.| ...+.+..+ ....+. +.....+.++..-...+.+|
T Consensus 267 PpGTGKTllAkaiA~e~~~~~----~~l~~~~l~--------------~~~vGe------se~~l~~~f~~A~~~~P~IL 322 (489)
T CHL00195 267 IQGTGKSLTAKAIANDWQLPL----LRLDVGKLF--------------GGIVGE------SESRMRQMIRIAEALSPCIL 322 (489)
T ss_pred CCCCcHHHHHHHHHHHhCCCE----EEEEhHHhc--------------ccccCh------HHHHHHHHHHHHHhcCCcEE
Confidence 479999999999998654332 222121111 000000 11112222222223468999
Q ss_pred EEeCCCChh--------------hhhHhhCCCCCCCCCCeEEEEecchhH-----HhhCCCCCeeecCCCChhhhHHHHH
Q 040234 81 VIDDAAHPD--------------HLRRLVGEPDWFGPGSRIIITTRNEHL-----LKLHPVKKVYKLEALTYDEAFRLLC 141 (377)
Q Consensus 81 VLDdv~~~~--------------~~~~l~~~l~~~~~gs~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~L~~ 141 (377)
.+|+++..- .+..++..+.....+--||.||....- .+.-.-...+.++.-+.++-.++|.
T Consensus 323 ~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~ 402 (489)
T CHL00195 323 WIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFK 402 (489)
T ss_pred EehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHH
Confidence 999987421 111222222211233345667765432 1111235678888889999999998
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 142 LKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
.+........ ........+++.+.|
T Consensus 403 ~~l~~~~~~~-~~~~dl~~La~~T~G 427 (489)
T CHL00195 403 IHLQKFRPKS-WKKYDIKKLSKLSNK 427 (489)
T ss_pred HHHhhcCCCc-ccccCHHHHHhhcCC
Confidence 7774422111 001235677777777
No 137
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.86 E-value=0.013 Score=55.00 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.|+|||.||..+++.+..+-..++++.
T Consensus 192 ~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 192 TGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 699999999999997655433444443
No 138
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.028 Score=50.85 Aligned_cols=65 Identities=23% Similarity=0.203 Sum_probs=37.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
+|+|||.||..+.+++. .....+.+. ...+++.++...... ......+.+.+.. -=|||
T Consensus 114 ~G~GKThLa~Ai~~~l~-~~g~sv~f~----------~~~el~~~Lk~~~~~---------~~~~~~l~~~l~~-~dlLI 172 (254)
T COG1484 114 PGVGKTHLAIAIGNELL-KAGISVLFI----------TAPDLLSKLKAAFDE---------GRLEEKLLRELKK-VDLLI 172 (254)
T ss_pred CCCcHHHHHHHHHHHHH-HcCCeEEEE----------EHHHHHHHHHHHHhc---------CchHHHHHHHhhc-CCEEE
Confidence 69999999999999877 433333333 444555555544321 1112223332222 24899
Q ss_pred EeCCCC
Q 040234 82 IDDAAH 87 (377)
Q Consensus 82 LDdv~~ 87 (377)
|||+-.
T Consensus 173 iDDlG~ 178 (254)
T COG1484 173 IDDIGY 178 (254)
T ss_pred EecccC
Confidence 999854
No 139
>PHA00729 NTP-binding motif containing protein
Probab=95.80 E-value=0.061 Score=47.41 Aligned_cols=17 Identities=41% Similarity=0.276 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||+||..+++++.
T Consensus 26 pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 26 QGSGKTTYALKVARDVF 42 (226)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999998654
No 140
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.77 E-value=0.014 Score=54.20 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=47.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||.||..+++.+...-..+.++. ...++..+....... +.. +. .+.+. +.=|||
T Consensus 165 ~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~------~~~---~~-l~~l~-~~dlLi 222 (306)
T PRK08939 165 FGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG------SVK---EK-IDAVK-EAPVLM 222 (306)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC------cHH---HH-HHHhc-CCCEEE
Confidence 699999999999997654422334433 234444444433111 111 22 22233 345899
Q ss_pred EeCCCC--hhhhh--HhhCCC-CCC-CCCCeEEEEecc
Q 040234 82 IDDAAH--PDHLR--RLVGEP-DWF-GPGSRIIITTRN 113 (377)
Q Consensus 82 LDdv~~--~~~~~--~l~~~l-~~~-~~gs~IIvTTR~ 113 (377)
|||+.. ...|. .++..+ ... ..+..+|+||..
T Consensus 223 IDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 223 LDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred EecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 999853 33343 233322 111 234567778764
No 141
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.76 E-value=0.0063 Score=49.44 Aligned_cols=17 Identities=53% Similarity=0.616 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+|||+||+.+++..
T Consensus 7 ~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 7 PPGTGKTTLARELAALL 23 (139)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999999977
No 142
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.67 E-value=0.051 Score=55.37 Aligned_cols=52 Identities=8% Similarity=-0.115 Sum_probs=32.2
Q ss_pred CCeeecCCCChhhhHHHHHHHhcCCCCC--c---hhHHHHHHHHHHHhCCCCchhhHH
Q 040234 123 KKVYKLEALTYDEAFRLLCLKAFDTHKP--L---EEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 123 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~--~---~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
...+.+.+++..+..+.|.+.+-..... . -...+....|+..++| +.--||.
T Consensus 266 v~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G-DiRsAIn 322 (637)
T TIGR00602 266 VSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG-DIRSAIN 322 (637)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC-hHHHHHH
Confidence 4568999999999877777666322110 0 0113567778878877 3555554
No 143
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.05 Score=53.76 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=48.3
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEE-EEecchhHHhh-CCCCCeeecCCCChhhhHHHHHHHhc
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRII-ITTRNEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAF 145 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~II-vTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~ 145 (377)
+|-=+.|+|.|.- ...|+.|+..+..-.+.-+.| .||--+.+... .+..+.|.++.|+.++-...+...+.
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~ 192 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILD 192 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHH
Confidence 3445889999864 567888888776434454444 45555555333 35578899999999988877776663
No 144
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.66 E-value=0.091 Score=55.83 Aligned_cols=68 Identities=24% Similarity=0.158 Sum_probs=39.3
Q ss_pred CceEEEEEeCCCCh----------hhhhHhhCCCCCCCCCCeEEEEecchhHHhh-------CCCCCeeecCCCChhhhH
Q 040234 75 RKKVLVVIDDAAHP----------DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL-------HPVKKVYKLEALTYDEAF 137 (377)
Q Consensus 75 ~k~~LLVLDdv~~~----------~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~ 137 (377)
+++.+|++|++... +.-+.|.+.+. ...-++|-||........ .+....+.+++++.++..
T Consensus 279 ~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~ 356 (852)
T TIGR03345 279 PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAI 356 (852)
T ss_pred CCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHH
Confidence 46899999997432 11123444432 123456655554322110 122468999999999999
Q ss_pred HHHHHHh
Q 040234 138 RLLCLKA 144 (377)
Q Consensus 138 ~L~~~~~ 144 (377)
++|....
T Consensus 357 ~iL~~~~ 363 (852)
T TIGR03345 357 RMLRGLA 363 (852)
T ss_pred HHHHHHH
Confidence 9975433
No 145
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.63 E-value=0.0086 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
.|+|||.||..++++...+-..+.|+
T Consensus 56 ~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 56 PGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred HhHHHHHHHHHHHHHhccCCcceeEe
Confidence 69999999999998654432233444
No 146
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.24 Score=46.27 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=75.8
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh---c-Cc
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL---R-RK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l---~-~k 76 (377)
++|.|||-||++|+++....| +..++. ++.....+. ....+|..+ + ..
T Consensus 193 PPGTGKTLLAkAVA~~T~AtF-----IrvvgS-------------ElVqKYiGE----------GaRlVRelF~lAreka 244 (406)
T COG1222 193 PPGTGKTLLAKAVANQTDATF-----IRVVGS-------------ELVQKYIGE----------GARLVRELFELAREKA 244 (406)
T ss_pred CCCCcHHHHHHHHHhccCceE-----EEeccH-------------HHHHHHhcc----------chHHHHHHHHHHhhcC
Confidence 489999999999999776654 332222 122222222 123333332 2 35
Q ss_pred eEEEEEeCCCCh-------------h---hhhHhhCCCCCCC--CCCeEEEEecchhHHhh-----CCCCCeeecCCCCh
Q 040234 77 KVLVVIDDAAHP-------------D---HLRRLVGEPDWFG--PGSRIIITTRNEHLLKL-----HPVKKVYKLEALTY 133 (377)
Q Consensus 77 ~~LLVLDdv~~~-------------~---~~~~l~~~l~~~~--~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~ 133 (377)
+.+|.+|.++.. + .+-.|+..+.... ..-|||..|...++... -.-.+.++++.-+.
T Consensus 245 PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 245 PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence 889999998642 1 1223444433332 24478877665444322 13367788885555
Q ss_pred hhhHHHHHHHhcCCCC-CchhHHHHHHHHHHHhCCCCchhh
Q 040234 134 DEAFRLLCLKAFDTHK-PLEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 134 ~ea~~L~~~~~~~~~~-~~~~~~~~~~~I~~~c~G~~lpla 173 (377)
+.=.++|.-+...-.- ..-+ .+.|++.+.| ..-|
T Consensus 325 ~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g--~sGA 359 (406)
T COG1222 325 EGRAEILKIHTRKMNLADDVD----LELLARLTEG--FSGA 359 (406)
T ss_pred HHHHHHHHHHhhhccCccCcC----HHHHHHhcCC--CchH
Confidence 5556677666532211 1222 4567888888 5544
No 147
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.59 E-value=0.025 Score=49.13 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=56.9
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+||||++..+...+.......++... +. .+..... ...+... .....+.....+.++..++..+=+++
T Consensus 10 tGSGKTTll~~ll~~~~~~~~~~i~t~e--~~------~E~~~~~-~~~~i~q-~~vg~~~~~~~~~i~~aLr~~pd~ii 79 (198)
T cd01131 10 TGSGKSTTLAAMIDYINKNKTHHILTIE--DP------IEFVHES-KRSLINQ-REVGLDTLSFENALKAALRQDPDVIL 79 (198)
T ss_pred CCCCHHHHHHHHHHHhhhcCCcEEEEEc--CC------ccccccC-ccceeee-cccCCCccCHHHHHHHHhcCCcCEEE
Confidence 6999999999988866544444444331 11 0000000 0000000 00111233456677888887788999
Q ss_pred EeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHH
Q 040234 82 IDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLL 117 (377)
Q Consensus 82 LDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~ 117 (377)
+|++.+.+.+....... ..|..++.|+....+.
T Consensus 80 ~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 80 VGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 99999877665544331 3355677777765443
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.54 E-value=0.034 Score=52.13 Aligned_cols=132 Identities=21% Similarity=0.234 Sum_probs=76.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHh-hccccCc-----cchhhhHHHHHHH--h
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLL-KLADNNI-----RNVYDGINMLRVR--L 73 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~-----~~~~~~~~~l~~~--l 73 (377)
+|.|||.+.+++.+.... ..+|++ +.+.+ ....++..|+.+.. ....... .+..+....+.++ .
T Consensus 39 sgTGKT~~~r~~l~~~n~---~~vw~n-~~ecf----t~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~ 110 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKLNL---ENVWLN-CVECF----TYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAA 110 (438)
T ss_pred CCCchhHHHHHHHhhcCC---cceeee-hHHhc----cHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHh
Confidence 699999999999986633 347888 66666 88889999998874 1111111 1222334444442 2
Q ss_pred c--CceEEEEEeCCCChhhhh--------HhhCCCCCCCCCCeEEEEecch---hHHhhCCC--CCeeecCCCChhhhHH
Q 040234 74 R--RKKVLVVIDDAAHPDHLR--------RLVGEPDWFGPGSRIIITTRNE---HLLKLHPV--KKVYKLEALTYDEAFR 138 (377)
Q Consensus 74 ~--~k~~LLVLDdv~~~~~~~--------~l~~~l~~~~~gs~IIvTTR~~---~v~~~~~~--~~~~~l~~L~~~ea~~ 138 (377)
. ++.++|||||++...+.+ .+-..++ .+. -+|+++-.. .....++. .-++..+.-+.+|-.+
T Consensus 111 t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~-i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~ 187 (438)
T KOG2543|consen 111 TNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPT-IVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQV 187 (438)
T ss_pred hccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCc-eEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHH
Confidence 2 358999999998643322 2222222 223 334443321 11221222 3356678889999999
Q ss_pred HHHHHh
Q 040234 139 LLCLKA 144 (377)
Q Consensus 139 L~~~~~ 144 (377)
++.+.-
T Consensus 188 Il~~~~ 193 (438)
T KOG2543|consen 188 ILSRDN 193 (438)
T ss_pred HHhcCC
Confidence 886544
No 149
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.50 E-value=0.058 Score=45.22 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=32.5
Q ss_pred ceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchh-HHhhC-CCCCeeecCCCC
Q 040234 76 KKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEH-LLKLH-PVKKVYKLEALT 132 (377)
Q Consensus 76 k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~l~~L~ 132 (377)
+.=++||||++. .+..+.|+..+..-..++.+|++|++.. +...+ +....+.+.+||
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 456899999987 3455555554443356788888887653 33322 445667776664
No 150
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.49 E-value=0.021 Score=50.61 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=21.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+|||+||.+++......-..++|+.
T Consensus 31 ~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 31 PPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3799999999999986654445567766
No 151
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.43 E-value=0.032 Score=48.49 Aligned_cols=39 Identities=31% Similarity=0.677 Sum_probs=24.9
Q ss_pred hcCc---eEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 73 LRRK---KVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 73 l~~k---~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
++++ .-.+|+|++.+ ..++..++..+ +.+||+|++--..
T Consensus 113 iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 113 IRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp GTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred hcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 4554 46999999977 56788887664 6799999987644
No 152
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.071 Score=48.99 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=43.6
Q ss_pred CCCCcHHHHHHHHHc----hhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCc
Q 040234 1 MGGLGKTTLARVVYD----LISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~----~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 76 (377)
++|.|||+|.+.+++ |..++|..+..+. + +..+++..++..-++. ....-+.+++.+.++
T Consensus 185 PPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE-i--------nshsLFSKWFsESgKl-------V~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE-I--------NSHSLFSKWFSESGKL-------VAKMFQKIQELVEDR 248 (423)
T ss_pred CCCCChhHHHHHHHHhheeeecCccccceEEE-E--------ehhHHHHHHHhhhhhH-------HHHHHHHHHHHHhCC
Confidence 589999999999999 4556677666665 3 3345555555442221 223334455555554
Q ss_pred e--EEEEEeCCCC
Q 040234 77 K--VLVVIDDAAH 87 (377)
Q Consensus 77 ~--~LLVLDdv~~ 87 (377)
. +.+.+|.|+.
T Consensus 249 ~~lVfvLIDEVES 261 (423)
T KOG0744|consen 249 GNLVFVLIDEVES 261 (423)
T ss_pred CcEEEEEeHHHHH
Confidence 3 4566888865
No 153
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.21 Score=49.85 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+|||-||++|+++-+-.| +. +.+. +++....+. ++......+++.=...+++|
T Consensus 553 PPGCGKTLlAKAVANEag~NF-----is-VKGP------------ELlNkYVGE------SErAVR~vFqRAR~saPCVI 608 (802)
T KOG0733|consen 553 PPGCGKTLLAKAVANEAGANF-----IS-VKGP------------ELLNKYVGE------SERAVRQVFQRARASAPCVI 608 (802)
T ss_pred CCCccHHHHHHHHhhhccCce-----Ee-ecCH------------HHHHHHhhh------HHHHHHHHHHHhhcCCCeEE
Confidence 489999999999999777665 33 3332 233333332 22223333444445679999
Q ss_pred EEeCCCCh-------------hhhhHhhCCCCCC--CCCCeEEEEecchhHHhh-----CCCCCeeecCCCChhhhHHHH
Q 040234 81 VIDDAAHP-------------DHLRRLVGEPDWF--GPGSRIIITTRNEHLLKL-----HPVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 81 VLDdv~~~-------------~~~~~l~~~l~~~--~~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~ 140 (377)
.+|.++.. ..++.|+..+... ..|--||-.|..+++... -.-...+-++.-+.+|-.+++
T Consensus 609 FFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~IL 688 (802)
T KOG0733|consen 609 FFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAIL 688 (802)
T ss_pred EecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHH
Confidence 99998642 1345555554432 234456655655544221 123677788888899999999
Q ss_pred HHHhc
Q 040234 141 CLKAF 145 (377)
Q Consensus 141 ~~~~~ 145 (377)
+...-
T Consensus 689 K~~tk 693 (802)
T KOG0733|consen 689 KTITK 693 (802)
T ss_pred HHHhc
Confidence 88774
No 154
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.27 E-value=0.039 Score=46.60 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=60.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcC--ceEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRR--KKVL 79 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~--k~~L 79 (377)
+|+|||++|.+++.. .....+++. ..... +. ++.+.+.+..... +......+....+.+.+.+ +.-.
T Consensus 8 ~~sGKS~~a~~~~~~---~~~~~~y~a-t~~~~----d~-em~~rI~~H~~~R--~~~w~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 8 ARSGKSRFAERLAAE---LGGPVTYIA-TAEAF----DD-EMAERIARHRKRR--PAHWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEE-ccCcC----CH-HHHHHHHHHHHhC--CCCceEeecHHHHHHHHHhcCCCCE
Confidence 689999999999865 223445554 44332 22 3444444432111 2222333334445555532 2347
Q ss_pred EEEeCCCC-------h----------hhhhHhhCCCCCCCCCCeEEEEecchhHHhhCCCCCeeecCCCChhhhHHHHHH
Q 040234 80 VVIDDAAH-------P----------DHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHPVKKVYKLEALTYDEAFRLLCL 142 (377)
Q Consensus 80 LVLDdv~~-------~----------~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~~L~~~ea~~L~~~ 142 (377)
+++|.+.. . +.+..+...+. ..+..+|++|.+- -.+..+.+..-+.|..
T Consensus 77 VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnEv------------G~g~vp~~~~~r~f~d 142 (169)
T cd00544 77 VLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNEV------------GLGVVPENALGRRFRD 142 (169)
T ss_pred EEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECCc------------CCCCCCCCHHHHHHHH
Confidence 99999521 0 12222333332 2344566665421 2344556677777877
Q ss_pred Hhc
Q 040234 143 KAF 145 (377)
Q Consensus 143 ~~~ 145 (377)
..+
T Consensus 143 ~lG 145 (169)
T cd00544 143 ELG 145 (169)
T ss_pred HHH
Confidence 764
No 155
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.23 E-value=0.096 Score=54.99 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=70.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.+++.....| +.+. .. .+... ..+ .........+.......+.+|
T Consensus 220 ppGtGKT~laraia~~~~~~~---i~i~-~~----------~i~~~----~~g------~~~~~l~~lf~~a~~~~p~il 275 (733)
T TIGR01243 220 PPGTGKTLLAKAVANEAGAYF---ISIN-GP----------EIMSK----YYG------ESEERLREIFKEAEENAPSII 275 (733)
T ss_pred CCCCChHHHHHHHHHHhCCeE---EEEe-cH----------HHhcc----ccc------HHHHHHHHHHHHHHhcCCcEE
Confidence 379999999999998765433 1111 11 11100 000 011122333333444567899
Q ss_pred EEeCCCCh-------------hhhhHhhCCCCCC-CCCCeEEE-Eecchh-HHhhC----CCCCeeecCCCChhhhHHHH
Q 040234 81 VIDDAAHP-------------DHLRRLVGEPDWF-GPGSRIII-TTRNEH-LLKLH----PVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 81 VLDdv~~~-------------~~~~~l~~~l~~~-~~gs~IIv-TTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~L~ 140 (377)
+||+++.. .....|...+... ..+..+++ ||.... +-..+ .-...+.+...+.++-.+++
T Consensus 276 ~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il 355 (733)
T TIGR01243 276 FIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEIL 355 (733)
T ss_pred EeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHH
Confidence 99998542 1122232222211 22333444 444332 21111 12356778888888888888
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHhCCCCchhh
Q 040234 141 CLKAFDTHKPLEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lpla 173 (377)
.......... + ......+++.+.| ..-+
T Consensus 356 ~~~~~~~~l~-~--d~~l~~la~~t~G--~~ga 383 (733)
T TIGR01243 356 KVHTRNMPLA-E--DVDLDKLAEVTHG--FVGA 383 (733)
T ss_pred HHHhcCCCCc-c--ccCHHHHHHhCCC--CCHH
Confidence 7554221111 1 1224567777777 5433
No 156
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.22 E-value=0.022 Score=49.77 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+|||+||.+++......-..++|+.
T Consensus 20 ~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 20 PPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4799999999999886655445667776
No 157
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.17 E-value=0.042 Score=49.76 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHHch--hccc---ccc-ceEEecchhhcccccCHHHHHHHHHHH
Q 040234 1 MGGLGKTTLARVVYDL--ISHE---FDG-SSFLADVREKCDKEGSVISLQKQLLSD 50 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~--~~~~---f~~-~~w~~~~~~~~~~~~~~~~~~~~i~~~ 50 (377)
.+|+|||+|+.+++-. +... -.. .+|++ ....+ ...++ .+|+++
T Consensus 46 ~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid-Te~~f----~~~Rl-~~i~~~ 95 (256)
T PF08423_consen 46 ESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID-TEGTF----SPERL-QQIAER 95 (256)
T ss_dssp STTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE-SSSSS-----HHHH-HHHHHH
T ss_pred ecccccchHHHHHHHHhhcccccccCCCceEEEe-CCCCC----CHHHH-HHHhhc
Confidence 3799999999888752 2222 233 45554 55554 44444 345544
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.15 E-value=0.2 Score=53.45 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||+||+.+++...
T Consensus 606 p~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 606 PTGVGKTELCKALANFMF 623 (857)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 379999999999998553
No 159
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.14 E-value=0.041 Score=49.01 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=18.7
Q ss_pred CCCcHHHHHHHHHchhc--cc----cccceEEe
Q 040234 2 GGLGKTTLARVVYDLIS--HE----FDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~--~~----f~~~~w~~ 28 (377)
+|+|||+||.+++-... .. -..++|+.
T Consensus 28 ~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 28 FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 79999999999985322 21 24566766
No 160
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.19 Score=50.43 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=63.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+|||++|+.++++-+-.|=. +... +++....+. ++....+.+++.=+--+.++
T Consensus 476 PPGC~KT~lAkalAne~~~nFls------vkgp------------EL~sk~vGe------SEr~ir~iF~kAR~~aP~Ii 531 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANEAGMNFLS------VKGP------------ELFSKYVGE------SERAIREVFRKARQVAPCII 531 (693)
T ss_pred CCCcchHHHHHHHhhhhcCCeee------ccCH------------HHHHHhcCc------hHHHHHHHHHHHhhcCCeEE
Confidence 58999999999999976666522 2111 011111111 12222222333223345777
Q ss_pred EEeCCCChh-------------hhhHhhCCCCCCCCCCeEEE---EecchhHHhh-C---CCCCeeecCCCChhhhHHHH
Q 040234 81 VIDDAAHPD-------------HLRRLVGEPDWFGPGSRIII---TTRNEHLLKL-H---PVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 81 VLDdv~~~~-------------~~~~l~~~l~~~~~gs~IIv---TTR~~~v~~~-~---~~~~~~~l~~L~~~ea~~L~ 140 (377)
.||.++... .+..|+..+........|+| |.|-..+-.. + ...+.+.++.-+.+.-.++|
T Consensus 532 FfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Il 611 (693)
T KOG0730|consen 532 FFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEIL 611 (693)
T ss_pred ehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHH
Confidence 788775421 23344444433233323333 3343322111 1 24677788888888888999
Q ss_pred HHHhcC
Q 040234 141 CLKAFD 146 (377)
Q Consensus 141 ~~~~~~ 146 (377)
+.++-+
T Consensus 612 k~~~kk 617 (693)
T KOG0730|consen 612 KQCAKK 617 (693)
T ss_pred HHHHhc
Confidence 888843
No 161
>PRK04296 thymidine kinase; Provisional
Probab=95.06 E-value=0.017 Score=49.85 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=52.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcccc-CccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN-NIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|.||||+|..++.+...+-..++.+. +.+ +.......++++++..... ......+..+.+++ ..++.-+|
T Consensus 11 ~GsGKTT~~l~~~~~~~~~g~~v~i~k---~~~----d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dvv 82 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEERGMKVLVFK---PAI----DDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDCV 82 (190)
T ss_pred CCCHHHHHHHHHHHHHHHcCCeEEEEe---ccc----cccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCEE
Confidence 499999999999987655533333331 111 0001111223333211110 01233344444444 23344589
Q ss_pred EEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchh
Q 040234 81 VIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEH 115 (377)
Q Consensus 81 VLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~ 115 (377)
|+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 83 iIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 83 LIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred EEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 9999954 333444433322 45778999998753
No 162
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.05 E-value=0.23 Score=51.21 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=64.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||++|+.++++..-.| +. ++. ..+... ..+. ......+.+.......+.+|
T Consensus 193 ~~G~GKt~~~~~~a~~~~~~f-----~~-is~--------~~~~~~----~~g~------~~~~~~~~f~~a~~~~P~Ii 248 (644)
T PRK10733 193 PPGTGKTLLAKAIAGEAKVPF-----FT-ISG--------SDFVEM----FVGV------GASRVRDMFEQAKKAAPCII 248 (644)
T ss_pred CCCCCHHHHHHHHHHHcCCCE-----EE-Eeh--------HHhHHh----hhcc------cHHHHHHHHHHHHhcCCcEE
Confidence 479999999999998665433 11 111 111110 0000 11122223333334567899
Q ss_pred EEeCCCChh----------------hhhHhhCCCCCC--CCCCeEEEEecchhHHhh-C----CCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHPD----------------HLRRLVGEPDWF--GPGSRIIITTRNEHLLKL-H----PVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~~----------------~~~~l~~~l~~~--~~gs~IIvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~ 137 (377)
+||+++... .+..++..+... ..+.-||.||........ . .-...+.++..+.++-.
T Consensus 249 fIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~ 328 (644)
T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred EehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHH
Confidence 999986531 123343332221 223345557766543221 1 22567888888888888
Q ss_pred HHHHHHhcC
Q 040234 138 RLLCLKAFD 146 (377)
Q Consensus 138 ~L~~~~~~~ 146 (377)
+++..+...
T Consensus 329 ~Il~~~~~~ 337 (644)
T PRK10733 329 QILKVHMRR 337 (644)
T ss_pred HHHHHHhhc
Confidence 888877643
No 163
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.13 Score=47.96 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=35.8
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChh
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYD 134 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ 134 (377)
++.-+++||+++.. +....++..+..-...+.+|++|... .+...+ +....+++.+.+..
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchHH
Confidence 45679999999873 34455555444435677888777743 333322 33566777763333
No 164
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.23 Score=50.42 Aligned_cols=155 Identities=15% Similarity=0.070 Sum_probs=77.3
Q ss_pred CCCcHHHHHHHHHchhcc-ccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISH-EFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|+|||+||+.+++.+.. ++-...++. ++...+. .+..++..+ ...+...+.-.+-++
T Consensus 440 ~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~l~~~--~~e~iQk~l------------------~~vfse~~~~~PSiI 498 (952)
T KOG0735|consen 440 KGSGKTNLVKALFDYYSKDLIAHVEIVS-CSTLDGS--SLEKIQKFL------------------NNVFSEALWYAPSII 498 (952)
T ss_pred CCCCHhHHHHHHHHHhccccceEEEEEe-chhccch--hHHHHHHHH------------------HHHHHHHHhhCCcEE
Confidence 699999999999995543 222333333 3332211 222332222 122334455678899
Q ss_pred EEeCCCChh--------hh-------h----HhhCCCCCCCCCCeEEEEecchhH-HhhC----CCCCeeecCCCChhhh
Q 040234 81 VIDDAAHPD--------HL-------R----RLVGEPDWFGPGSRIIITTRNEHL-LKLH----PVKKVYKLEALTYDEA 136 (377)
Q Consensus 81 VLDdv~~~~--------~~-------~----~l~~~l~~~~~gs~IIvTTR~~~v-~~~~----~~~~~~~l~~L~~~ea 136 (377)
||||++... +| . .+..-+...+..-++|.|.....- -..+ -...+..|..+...+-
T Consensus 499 vLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R 578 (952)
T KOG0735|consen 499 VLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRR 578 (952)
T ss_pred EEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHH
Confidence 999986311 11 1 111111111222245555544321 1111 1244677888988888
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhh
Q 040234 137 FRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSY 180 (377)
Q Consensus 137 ~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~ 180 (377)
.++|........ .....+..+-+..+|+| =++.-+.+...+
T Consensus 579 ~~IL~~~~s~~~--~~~~~~dLd~ls~~TEG-y~~~DL~ifVeR 619 (952)
T KOG0735|consen 579 KEILTTIFSKNL--SDITMDDLDFLSVKTEG-YLATDLVIFVER 619 (952)
T ss_pred HHHHHHHHHhhh--hhhhhHHHHHHHHhcCC-ccchhHHHHHHH
Confidence 888776653322 11122333447888876 145555555443
No 165
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.04 E-value=0.18 Score=52.91 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+|||+||+.+++.+.
T Consensus 492 p~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALG 509 (731)
T ss_pred CCCccHHHHHHHHHHHhc
Confidence 479999999999998663
No 166
>PRK08118 topology modulation protein; Reviewed
Probab=95.04 E-value=0.04 Score=46.44 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=19.0
Q ss_pred CCCCcHHHHHHHHHchhc---cccccceE
Q 040234 1 MGGLGKTTLARVVYDLIS---HEFDGSSF 26 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~---~~f~~~~w 26 (377)
++|+||||||+.++++.. -+++..+|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 489999999999998643 23454444
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.069 Score=55.14 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=49.7
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceE-E
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKV-L 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-L 79 (377)
+.|+|||.||+.++..+-+.=...+-+. +|+.... .-.+.|.+.++.-.. -++ --.|.+..+.++| +
T Consensus 529 PTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~Ek---------HsVSrLIGaPPGYVG-yee-GG~LTEaVRr~PySV 596 (786)
T COG0542 529 PTGVGKTELAKALAEALFGDEQALIRID-MSEYMEK---------HSVSRLIGAPPGYVG-YEE-GGQLTEAVRRKPYSV 596 (786)
T ss_pred CCcccHHHHHHHHHHHhcCCCccceeec-hHHHHHH---------HHHHHHhCCCCCCce-ecc-ccchhHhhhcCCCeE
Confidence 4799999999999996654333334343 5554321 222333333222111 111 2345566677877 8
Q ss_pred EEEeCCCC--hhhhhHhhCCCC
Q 040234 80 VVIDDAAH--PDHLRRLVGEPD 99 (377)
Q Consensus 80 LVLDdv~~--~~~~~~l~~~l~ 99 (377)
|+||+++. ++.++-|+..+.
T Consensus 597 iLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 597 ILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred EEechhhhcCHHHHHHHHHHhc
Confidence 88999974 666666665544
No 168
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.99 E-value=0.051 Score=50.73 Aligned_cols=28 Identities=25% Similarity=0.109 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+||||||.+++......-...+|+.
T Consensus 63 p~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 63 PESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4799999999998875544444556665
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.94 E-value=0.15 Score=54.08 Aligned_cols=121 Identities=15% Similarity=0.098 Sum_probs=61.6
Q ss_pred CCCCcHHHHHHHHHchhccc-----c-ccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh-
Q 040234 1 MGGLGKTTLARVVYDLISHE-----F-DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL- 73 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~-----f-~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l- 73 (377)
.+|+|||+||..+++++... . ...+|.. +...++. +. ....+.++....+.+.+
T Consensus 208 ~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l----------~~~~l~a-------g~--~~~ge~e~rl~~i~~~~~ 268 (821)
T CHL00095 208 EPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL----------DIGLLLA-------GT--KYRGEFEERLKRIFDEIQ 268 (821)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe----------eHHHHhc-------cC--CCccHHHHHHHHHHHHHH
Confidence 47999999999999865421 1 1345544 2222211 00 00111222222222222
Q ss_pred cCceEEEEEeCCCCh----------hhhhHhhCCCCCCCCCCeEEEEecchhHHhh-------CCCCCeeecCCCChhhh
Q 040234 74 RRKKVLVVIDDAAHP----------DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL-------HPVKKVYKLEALTYDEA 136 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~----------~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~-------~~~~~~~~l~~L~~~ea 136 (377)
..++.+|++|++... +.-+.|.+.+. ...-++|.+|........ ......++++..+.++.
T Consensus 269 ~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~ 346 (821)
T CHL00095 269 ENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEET 346 (821)
T ss_pred hcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHH
Confidence 346789999998421 12223333332 122355555554433111 12345678888888888
Q ss_pred HHHHHH
Q 040234 137 FRLLCL 142 (377)
Q Consensus 137 ~~L~~~ 142 (377)
..++..
T Consensus 347 ~aILr~ 352 (821)
T CHL00095 347 IEILFG 352 (821)
T ss_pred HHHHHH
Confidence 887754
No 170
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.92 E-value=0.48 Score=43.61 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=41.9
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHH
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLC 141 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~ 141 (377)
+++-++|+|+++. .+..+.|+..+..-.+++.+|++|.+. .+...+ +....+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 4556899999987 445666766665435566677666554 444443 3456777766 6666666664
No 171
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.90 E-value=0.053 Score=44.73 Aligned_cols=28 Identities=29% Similarity=0.186 Sum_probs=19.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+|||+++..++......-...+++.
T Consensus 7 ~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 7 PTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3799999999999986654333444444
No 172
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.88 E-value=0.2 Score=53.38 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
..|+|||+||+.+++....
T Consensus 603 p~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 603 PTGVGKTELAKALAEFLFD 621 (852)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 4799999999999986543
No 173
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.86 E-value=0.24 Score=44.29 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+|||+||.+++..+
T Consensus 9 ~~G~GKS~lal~la~~v 25 (239)
T cd01125 9 PGGTGKSSLLLVLALAM 25 (239)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 48999999999998744
No 174
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.85 E-value=0.11 Score=45.86 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHchhcccc------ccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEF------DGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f------~~~~w~~ 28 (377)
+|+|||+||.+++....... ..++|+.
T Consensus 28 ~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 28 FGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 79999999999987543333 3446665
No 175
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.75 E-value=0.83 Score=43.34 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+|||.+|+.++++..-.
T Consensus 156 PPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 156 GKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 37999999999999977554
No 176
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.75 E-value=0.068 Score=49.84 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=40.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc----ccCccchhhhHHHHHHHhc-C
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA----DNNIRNVYDGINMLRVRLR-R 75 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~~l~-~ 75 (377)
.+|+||||||.+++......-...+|+. .-+.. +. ..+++++... -..+.+.++..+.+...++ +
T Consensus 63 ~~GsGKTtLaL~~~~~~~~~g~~v~yId-~E~~~----~~-----~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 63 PESSGKTTLALHAIAEAQKAGGTAAFID-AEHAL----DP-----VYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEc-ccchh----HH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 3799999999998875544434455664 32221 11 1233322111 1122344555555555544 3
Q ss_pred ceEEEEEeCCC
Q 040234 76 KKVLVVIDDAA 86 (377)
Q Consensus 76 k~~LLVLDdv~ 86 (377)
..-++|+|.+.
T Consensus 133 ~~~lIVIDSv~ 143 (321)
T TIGR02012 133 AVDIIVVDSVA 143 (321)
T ss_pred CCcEEEEcchh
Confidence 45688888874
No 177
>PTZ00202 tuzin; Provisional
Probab=94.67 E-value=0.13 Score=49.62 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=72.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh-----c-
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL-----R- 74 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-----~- 74 (377)
++|+|||||++.+..... ..+++.+.. +..++++.++.+|+.... ....++.+.+++.+ .
T Consensus 294 ~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eElLr~LL~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~ 359 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTEDTLRSVVKALGVPNV---EACGDLLDFISEACRRAKKMN 359 (550)
T ss_pred CCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHHHHHHHHHHcCCCCc---ccHHHHHHHHHHHHHHHHHhC
Confidence 479999999999997554 225555443 457899999999875322 12223334433333 2
Q ss_pred CceEEEEEeCCC--Chh-hhhHhhCCCCCCCCCCeEEEEecchhHHhh---CCCCCeeecCCCChhhhHHHHHHH
Q 040234 75 RKKVLVVIDDAA--HPD-HLRRLVGEPDWFGPGSRIIITTRNEHLLKL---HPVKKVYKLEALTYDEAFRLLCLK 143 (377)
Q Consensus 75 ~k~~LLVLDdv~--~~~-~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~L~~~~ 143 (377)
+++.+||+-=-+ +.. .+++.. .+-....-|+|++---.+.+... ++.-..|-+++++.++|.+.-.+.
T Consensus 360 GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 360 GETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred CCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 566666665332 211 122211 11122445778776555443211 133456778999999988765543
No 178
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.66 E-value=0.38 Score=42.33 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=18.1
Q ss_pred CCCCcHHHHHHHHHchhc-cccccce
Q 040234 1 MGGLGKTTLARVVYDLIS-HEFDGSS 25 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~-~~f~~~~ 25 (377)
|+|+||||-+..+++++- ..|..++
T Consensus 56 pPG~GKTTsi~~LAr~LLG~~~ke~v 81 (333)
T KOG0991|consen 56 PPGTGKTTSILCLARELLGDSYKEAV 81 (333)
T ss_pred CCCCchhhHHHHHHHHHhChhhhhHh
Confidence 689999999999888643 3344443
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.58 E-value=0.16 Score=53.11 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=38.0
Q ss_pred CceEEEEEeCCCCh----------hhhh-HhhCCCCCCCCCCeEEEEecchhHHhh-------CCCCCeeecCCCChhhh
Q 040234 75 RKKVLVVIDDAAHP----------DHLR-RLVGEPDWFGPGSRIIITTRNEHLLKL-------HPVKKVYKLEALTYDEA 136 (377)
Q Consensus 75 ~k~~LLVLDdv~~~----------~~~~-~l~~~l~~~~~gs~IIvTTR~~~v~~~-------~~~~~~~~l~~L~~~ea 136 (377)
.++.+|+||++... .+.. .+.+.+. ...-++|-+|....+... .+....+.+++++.++.
T Consensus 277 ~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~ 354 (758)
T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_pred cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 45679999998631 1222 2333332 123345544443332110 12235789999999999
Q ss_pred HHHHHHH
Q 040234 137 FRLLCLK 143 (377)
Q Consensus 137 ~~L~~~~ 143 (377)
.+++...
T Consensus 355 ~~IL~~~ 361 (758)
T PRK11034 355 VQIINGL 361 (758)
T ss_pred HHHHHHH
Confidence 9998754
No 180
>PRK09354 recA recombinase A; Provisional
Probab=94.57 E-value=0.076 Score=50.01 Aligned_cols=76 Identities=17% Similarity=0.087 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc----ccCccchhhhHHHHHHHhcC-
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA----DNNIRNVYDGINMLRVRLRR- 75 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~~l~~- 75 (377)
.+|+||||||.+++......-...+|+. .-+.. +. ..+++++... -..+.+.++..+.+...++.
T Consensus 68 ~~GsGKTtLal~~~~~~~~~G~~~~yId-~E~s~----~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~ 137 (349)
T PRK09354 68 PESSGKTTLALHAIAEAQKAGGTAAFID-AEHAL----DP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSG 137 (349)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEC-Cccch----HH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcC
Confidence 3799999999998875554444556665 32222 21 2233332111 11223444455555554433
Q ss_pred ceEEEEEeCCC
Q 040234 76 KKVLVVIDDAA 86 (377)
Q Consensus 76 k~~LLVLDdv~ 86 (377)
..-|+|+|.+.
T Consensus 138 ~~~lIVIDSva 148 (349)
T PRK09354 138 AVDLIVVDSVA 148 (349)
T ss_pred CCCEEEEeChh
Confidence 45577888764
No 181
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.57 E-value=0.058 Score=52.35 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCCCcHHHHHHHHHchhcc--ccccceEEecchhhc
Q 040234 1 MGGLGKTTLARVVYDLISH--EFDGSSFLADVREKC 34 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~--~f~~~~w~~~~~~~~ 34 (377)
++|+|||++|+.+++.+.. .+....|+. +++..
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~Vt-FHpsy 236 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQ-FHQSY 236 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEe-ecccc
Confidence 6899999999999986543 333444444 65544
No 182
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.48 E-value=0.063 Score=50.89 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+||||+...+.+.+.......++.. . +..+....-...+... .....+.....+.++..|+..+=.|+
T Consensus 131 tGSGKTT~l~al~~~i~~~~~~~i~ti--E-------dp~E~~~~~~~~~i~q-~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 131 TGSGKSTTLASMIDYINKNAAGHIITI--E-------DPIEYVHRNKRSLINQ-REVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred CCCCHHHHHHHHHHhhCcCCCCEEEEE--c-------CChhhhccCccceEEc-cccCCCCcCHHHHHHHhhccCCCEEE
Confidence 699999999999887665555555543 1 1111110000000000 00111223456778888888999999
Q ss_pred EeCCCChhhhhHhhCCCCCCCCCCeEEEEecchh
Q 040234 82 IDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEH 115 (377)
Q Consensus 82 LDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~ 115 (377)
+|.+.+.+.+....... ..|-.|+.|.....
T Consensus 201 vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 201 IGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred EeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 99999977665433321 34545666665443
No 183
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.46 E-value=0.052 Score=47.79 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=20.3
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+||||||.+++.....+-..++|+.
T Consensus 27 ~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 27 PPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3799999999999986544433455664
No 184
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.46 E-value=0.097 Score=44.16 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=27.9
Q ss_pred HHHHHHHhcCce-EEEEEeCCCC--------hhhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 66 INMLRVRLRRKK-VLVVIDDAAH--------PDHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 66 ~~~l~~~l~~k~-~LLVLDdv~~--------~~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
.+..++.+...+ =|||||.+-. .+++-.++. ...++..||+|-|+.
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~---~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ---ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH---hCCCCCEEEEECCCC
Confidence 334455555544 4999999753 233333333 235567899999975
No 185
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.11 Score=49.40 Aligned_cols=76 Identities=22% Similarity=0.199 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh-cCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL-RRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~LL 80 (377)
+|||||||..+++.++.++- ...++. ++. +..++-. -+++++........-.+.-.+.+.+.+ +.++-|+
T Consensus 102 PGIGKSTLLLQva~~lA~~~-~vLYVs--GEE-----S~~Qikl-RA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lv 172 (456)
T COG1066 102 PGIGKSTLLLQVAARLAKRG-KVLYVS--GEE-----SLQQIKL-RADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLV 172 (456)
T ss_pred CCCCHHHHHHHHHHHHHhcC-cEEEEe--CCc-----CHHHHHH-HHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEE
Confidence 69999999999999888776 444443 332 4444322 233333211111111112223333333 4678899
Q ss_pred EEeCCC
Q 040234 81 VIDDAA 86 (377)
Q Consensus 81 VLDdv~ 86 (377)
|+|.+.
T Consensus 173 VIDSIQ 178 (456)
T COG1066 173 VIDSIQ 178 (456)
T ss_pred EEeccc
Confidence 999974
No 186
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.45 E-value=0.12 Score=43.88 Aligned_cols=27 Identities=30% Similarity=0.682 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
+.|+||||+|+.+++++...+...+++
T Consensus 15 ~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 479999999999999887666665555
No 187
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.42 E-value=0.29 Score=52.30 Aligned_cols=123 Identities=13% Similarity=0.066 Sum_probs=62.9
Q ss_pred CCCCcHHHHHHHHHchhcccc------ccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh-
Q 040234 1 MGGLGKTTLARVVYDLISHEF------DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL- 73 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f------~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l- 73 (377)
.+|+|||+||..+++++...+ ...+|..++ ..++... ....+.+.....+.+.+
T Consensus 202 ~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~----------~~l~a~~---------~~~g~~e~~l~~~l~~~~ 262 (852)
T TIGR03346 202 EPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM----------GALIAGA---------KYRGEFEERLKAVLNEVT 262 (852)
T ss_pred CCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH----------HHHhhcc---------hhhhhHHHHHHHHHHHHH
Confidence 379999999999998764432 223444322 2211000 00011222222222222
Q ss_pred c-CceEEEEEeCCCCh----------hhhhHhhCCCCCCCCCCeEEEEecchhHHhh-------CCCCCeeecCCCChhh
Q 040234 74 R-RKKVLVVIDDAAHP----------DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL-------HPVKKVYKLEALTYDE 135 (377)
Q Consensus 74 ~-~k~~LLVLDdv~~~----------~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~-------~~~~~~~~l~~L~~~e 135 (377)
+ +++.+|++|++... +..+.|.+.+. ...-++|.+|........ ......+.++..+.++
T Consensus 263 ~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~ 340 (852)
T TIGR03346 263 KSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVED 340 (852)
T ss_pred hcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHH
Confidence 2 46899999998642 12333444432 122345544443322110 1224567899999999
Q ss_pred hHHHHHHHh
Q 040234 136 AFRLLCLKA 144 (377)
Q Consensus 136 a~~L~~~~~ 144 (377)
..+++....
T Consensus 341 ~~~iL~~~~ 349 (852)
T TIGR03346 341 TISILRGLK 349 (852)
T ss_pred HHHHHHHHH
Confidence 999887553
No 188
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.42 E-value=0.02 Score=48.48 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||++|..++.+.
T Consensus 10 ~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 10 ARSGKSRFAERLAAQS 25 (170)
T ss_pred CCccHHHHHHHHHHHc
Confidence 6899999999998754
No 189
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.41 E-value=0.23 Score=41.83 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.+..++-+++||+-.. . +.+..++..+. .+..||++|.+......
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh
Confidence 4455666778999999753 1 23333333332 34678888888766543
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.41 E-value=0.28 Score=52.26 Aligned_cols=68 Identities=10% Similarity=-0.017 Sum_probs=37.8
Q ss_pred CceEEEEEeCCCCh----------hhhhHhhCCCCCCCCCCeEEEEecchhHHh------hC-CCCCeeecCCCChhhhH
Q 040234 75 RKKVLVVIDDAAHP----------DHLRRLVGEPDWFGPGSRIIITTRNEHLLK------LH-PVKKVYKLEALTYDEAF 137 (377)
Q Consensus 75 ~k~~LLVLDdv~~~----------~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~------~~-~~~~~~~l~~L~~~ea~ 137 (377)
+++.+|++|++... +.-+.|.+.+. ...-++|-+|....... .. .....+.+...+.++..
T Consensus 270 ~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~ 347 (857)
T PRK10865 270 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI 347 (857)
T ss_pred CCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHH
Confidence 46889999998542 12333444442 22345555554433211 01 12335667777889998
Q ss_pred HHHHHHh
Q 040234 138 RLLCLKA 144 (377)
Q Consensus 138 ~L~~~~~ 144 (377)
+++....
T Consensus 348 ~iL~~l~ 354 (857)
T PRK10865 348 AILRGLK 354 (857)
T ss_pred HHHHHHh
Confidence 8886544
No 191
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.034 Score=45.90 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHchhccc-cc-cceEEecchhh
Q 040234 1 MGGLGKTTLARVVYDLISHE-FD-GSSFLADVREK 33 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~-f~-~~~w~~~~~~~ 33 (377)
|+|+|||||++.+++.+++. |. +++|...++..
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g 47 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG 47 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC
Confidence 68999999999999987766 76 45665555543
No 192
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.26 E-value=0.29 Score=51.69 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
.+|+|||+||+.+++.+...|
T Consensus 355 ppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 355 PPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CCCCCHHHHHHHHHHHhcCCe
Confidence 479999999999999775443
No 193
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.078 Score=48.38 Aligned_cols=80 Identities=23% Similarity=0.103 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHH-HhhccccCccchhhhHHHHHHH---hcCc
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSD-LLKLADNNIRNVYDGINMLRVR---LRRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~l~~~---l~~k 76 (377)
..|+||||||.+++-..+..-...+|+...+.. ++..+ .++... +....-..+.+.++..+.+... ..++
T Consensus 68 ~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l-----~p~r~-~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~ 141 (279)
T COG0468 68 PESSGKTTLALQLVANAQKPGGKAAFIDTEHAL-----DPERA-KQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEK 141 (279)
T ss_pred CCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCC-----CHHHH-HHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCC
Confidence 368999999999887555555577888744332 33333 233333 2111112233333333333333 2333
Q ss_pred eEEEEEeCCC
Q 040234 77 KVLVVIDDAA 86 (377)
Q Consensus 77 ~~LLVLDdv~ 86 (377)
--|+|+|.+-
T Consensus 142 i~LvVVDSva 151 (279)
T COG0468 142 IDLLVVDSVA 151 (279)
T ss_pred CCEEEEecCc
Confidence 5588888874
No 194
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.10 E-value=0.45 Score=43.17 Aligned_cols=71 Identities=21% Similarity=0.018 Sum_probs=47.5
Q ss_pred EEEEecchhHHhhC--CCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhh
Q 040234 107 IIITTRNEHLLKLH--PVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYT 181 (377)
Q Consensus 107 IIvTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l 181 (377)
|=.|||.-.+...+ .-.-+.+++-.+++|-.++..+.+..-. .+-.++.+.+|+++..| -|--..-+-.+.
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRG--TPRIAnRLLrRV 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRG--TPRIANRLLRRV 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccC--CcHHHHHHHHHH
Confidence 44688865443332 2245678899999999999988873221 12225678999999999 997655554443
No 195
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.08 E-value=0.17 Score=46.06 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=30.2
Q ss_pred CceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHH
Q 040234 75 RKKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLL 117 (377)
Q Consensus 75 ~k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~ 117 (377)
..+=++++|.+...+.+..+...+ ..|..||+||....+.
T Consensus 193 ~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 193 MSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 578899999998877777665554 2477899999976553
No 196
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.05 E-value=0.091 Score=45.01 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=28.1
Q ss_pred HHHHHHHhcCce-EEEEEeCCCChh-----hhhHhhCCCCCCCCCCeEEEEecch
Q 040234 66 INMLRVRLRRKK-VLVVIDDAAHPD-----HLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 66 ~~~l~~~l~~k~-~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
.+..++.+...+ =|||||.+-..- ..+.+...+.....+..||+|-|..
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 334455555444 499999975421 1222322233335567899999975
No 197
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=93.99 E-value=0.82 Score=42.72 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=16.1
Q ss_pred CCcHHHHHHHHHchhccc
Q 040234 3 GLGKTTLARVVYDLISHE 20 (377)
Q Consensus 3 GiGKTtLA~~v~~~~~~~ 20 (377)
|+|||++.+.+.+++++.
T Consensus 30 GsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 30 GSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999977766
No 198
>PRK07261 topology modulation protein; Provisional
Probab=93.99 E-value=0.18 Score=42.65 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||||+++....
T Consensus 8 ~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 8 YSGSGKSTLARKLSQHY 24 (171)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998743
No 199
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.87 E-value=0.16 Score=54.04 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+|||.||+.+++.+..
T Consensus 604 p~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 604 PSGVGKTETALALAELLYG 622 (852)
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 4799999999999986543
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.80 E-value=0.11 Score=44.95 Aligned_cols=49 Identities=16% Similarity=0.073 Sum_probs=27.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhh
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLK 53 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~ 53 (377)
+.|+||||.+.+++.+.+.+ ...+-+... +.++ . ...+-++..++.++.
T Consensus 9 ptGvGKTTt~aKLAa~~~~~-~~~v~lis~-D~~R-~-ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLKLK-GKKVALISA-DTYR-I-GAVEQLKTYAEILGV 57 (196)
T ss_dssp STTSSHHHHHHHHHHHHHHT-T--EEEEEE-STSS-T-HHHHHHHHHHHHHTE
T ss_pred CCCCchHhHHHHHHHHHhhc-cccceeecC-CCCC-c-cHHHHHHHHHHHhcc
Confidence 47999999998888865555 433333212 2221 1 444555666666543
No 201
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.69 E-value=0.25 Score=43.98 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
.|.|||+|++.+.++....
T Consensus 61 rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 61 RGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 5999999999999866543
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.62 E-value=0.044 Score=43.13 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999865
No 203
>PRK06762 hypothetical protein; Provisional
Probab=93.56 E-value=0.32 Score=40.69 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.+++++
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999866
No 204
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.55 E-value=0.23 Score=44.42 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+|||+||.+++......-..++|+.
T Consensus 30 pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 30 PGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 799999999998774333334556665
No 205
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.52 E-value=0.32 Score=42.71 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc-----ccCccch----------hhhH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA-----DNNIRNV----------YDGI 66 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~----------~~~~ 66 (377)
+|+|||+|+.++++....... +++. +++..+ .+.++.+++...-.... ....... -...
T Consensus 24 ~g~GKt~Ll~~i~~~~~~d~~--V~~~-iGer~~---Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~A 97 (215)
T PF00006_consen 24 AGVGKTVLLQEIANNQDADVV--VYAL-IGERGR---EVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIA 97 (215)
T ss_dssp TTSSHHHHHHHHHHHCTTTEE--EEEE-ESECHH---HHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhcccccce--eeee-ccccch---hHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhh
Confidence 699999999999986643322 4443 544321 44455544432200000 0000110 1123
Q ss_pred HHHHHHhcCceEEEEEeCCCC
Q 040234 67 NMLRVRLRRKKVLVVIDDAAH 87 (377)
Q Consensus 67 ~~l~~~l~~k~~LLVLDdv~~ 87 (377)
+.++. ++++.|+++||+-.
T Consensus 98 Eyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 98 EYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHH--TTSEEEEEEETHHH
T ss_pred HHHhh--cCCceeehhhhhHH
Confidence 33444 68999999999844
No 206
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.55 Score=46.96 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=39.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+|||.||+.++.+..--| +. ++.. +++..+.+ .+++...+.+.+....-++++
T Consensus 231 PPGCGKT~lA~AiAgel~vPf-----~~-isAp------------eivSGvSG------ESEkkiRelF~~A~~~aPciv 286 (802)
T KOG0733|consen 231 PPGCGKTSLANAIAGELGVPF-----LS-ISAP------------EIVSGVSG------ESEKKIRELFDQAKSNAPCIV 286 (802)
T ss_pred CCCccHHHHHHHHhhhcCCce-----Ee-ecch------------hhhcccCc------ccHHHHHHHHHHHhccCCeEE
Confidence 489999999999999765433 22 2111 11222111 244455556666666789999
Q ss_pred EEeCCCC
Q 040234 81 VIDDAAH 87 (377)
Q Consensus 81 VLDdv~~ 87 (377)
.+|+++-
T Consensus 287 FiDeIDA 293 (802)
T KOG0733|consen 287 FIDEIDA 293 (802)
T ss_pred Eeecccc
Confidence 9999864
No 207
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.41 E-value=0.33 Score=41.90 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+||||+|+++++.+++.
T Consensus 9 yPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred CCCCCchHHHHHHHHHHHHh
Confidence 48999999999999966554
No 208
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.36 E-value=0.25 Score=48.45 Aligned_cols=44 Identities=32% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLL 48 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~ 48 (377)
+|+|||+|+.++++....+..+.+-+..+++..+ .+.++...+.
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~r---Ev~ef~~~~~ 195 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQHSGSSVFAGVGERSR---EGHELYHEMK 195 (461)
T ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchH---HHHHHHHHHH
Confidence 6999999999999866543444433343554331 4444544444
No 209
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.29 E-value=0.47 Score=40.23 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.+..++=+++||+... .. .+..++..+ ..+..||++|.+.....
T Consensus 109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV---LKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHH
Confidence 4455567778999999754 22 222222222 23567888888876654
No 210
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.25 E-value=0.16 Score=48.38 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=48.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
-|.|||-|.-.+|+.+...-..++ .....+.++-+.+.... ...+....+.+.+.++..||.
T Consensus 71 vG~GKT~Lmd~f~~~lp~~~k~R~-------------HFh~Fm~~vh~~l~~~~-----~~~~~l~~va~~l~~~~~lLc 132 (362)
T PF03969_consen 71 VGRGKTMLMDLFYDSLPIKRKRRV-------------HFHEFMLDVHSRLHQLR-----GQDDPLPQVADELAKESRLLC 132 (362)
T ss_pred CCCchhHHHHHHHHhCCccccccc-------------cccHHHHHHHHHHHHHh-----CCCccHHHHHHHHHhcCCEEE
Confidence 489999999999985443211111 11123333333322211 122334556667778888999
Q ss_pred EeCC--CChh---hhhHhhCCCCCCCCCCeEEEEecch
Q 040234 82 IDDA--AHPD---HLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 82 LDdv--~~~~---~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
+|.. .|.. .+..|...+- ..| .|||+|-+.
T Consensus 133 fDEF~V~DiaDAmil~rLf~~l~--~~g-vvlVaTSN~ 167 (362)
T PF03969_consen 133 FDEFQVTDIADAMILKRLFEALF--KRG-VVLVATSNR 167 (362)
T ss_pred EeeeeccchhHHHHHHHHHHHHH--HCC-CEEEecCCC
Confidence 9995 3432 2444444332 234 456666554
No 211
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.23 E-value=1.8 Score=38.91 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=74.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|.|||.+|+.++++.+--| +. + ...+++ .+.. +. ......+...+.-+.-++++
T Consensus 159 ppGTGKTm~Akalane~kvp~-----l~-v--------kat~li---GehV-Gd------gar~Ihely~rA~~~aPciv 214 (368)
T COG1223 159 PPGTGKTMMAKALANEAKVPL-----LL-V--------KATELI---GEHV-GD------GARRIHELYERARKAAPCIV 214 (368)
T ss_pred CCCccHHHHHHHHhcccCCce-----EE-e--------chHHHH---HHHh-hh------HHHHHHHHHHHHHhcCCeEE
Confidence 479999999999999665432 11 1 111111 1111 11 01111222222334468999
Q ss_pred EEeCCCCh--------------hhhhHhhCCCCCC--CCCCeEEEEecchhHHhhC---CCCCeeecCCCChhhhHHHHH
Q 040234 81 VIDDAAHP--------------DHLRRLVGEPDWF--GPGSRIIITTRNEHLLKLH---PVKKVYKLEALTYDEAFRLLC 141 (377)
Q Consensus 81 VLDdv~~~--------------~~~~~l~~~l~~~--~~gs~IIvTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~L~~ 141 (377)
.||..+.. +.+++|+..+..- +.|-..|..|....++... .-...++...-+.+|-.+++.
T Consensus 215 FiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile 294 (368)
T COG1223 215 FIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILE 294 (368)
T ss_pred EehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHH
Confidence 99987642 2345565554432 3354555555555443221 224456677777888888888
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 142 LKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
.++-.-.-+ .....+.++++.+|
T Consensus 295 ~y~k~~Plp---v~~~~~~~~~~t~g 317 (368)
T COG1223 295 YYAKKFPLP---VDADLRYLAAKTKG 317 (368)
T ss_pred HHHHhCCCc---cccCHHHHHHHhCC
Confidence 877321111 12236678888888
No 212
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.22 E-value=0.34 Score=45.16 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=40.7
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc----cCccchhhhHHHHHHHhcCc-
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD----NNIRNVYDGINMLRVRLRRK- 76 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~~k- 76 (377)
.|+||||||.++..+....-...+|+. .-.. +-...+++++.... ..+.+.++..+...+.++..
T Consensus 62 ~ssGKttLaL~~ia~~q~~g~~~a~ID-~e~~---------ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~ 131 (322)
T PF00154_consen 62 ESSGKTTLALHAIAEAQKQGGICAFID-AEHA---------LDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGA 131 (322)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-EEEEEE-SSS------------HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTS
T ss_pred CCCchhhhHHHHHHhhhcccceeEEec-Cccc---------chhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhccc
Confidence 588999999999986655545567776 3222 22233344333221 12334455555555655543
Q ss_pred eEEEEEeCCCC
Q 040234 77 KVLVVIDDAAH 87 (377)
Q Consensus 77 ~~LLVLDdv~~ 87 (377)
.-++|+|.|..
T Consensus 132 ~~lVVvDSv~a 142 (322)
T PF00154_consen 132 VDLVVVDSVAA 142 (322)
T ss_dssp ESEEEEE-CTT
T ss_pred ccEEEEecCcc
Confidence 45888888865
No 213
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.17 E-value=0.26 Score=43.93 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc-------------------cCccch
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-------------------NNIRNV 62 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------------------~~~~~~ 62 (377)
+|+|||+||.+++.....+=..++|+. ..+ ...++++++. +++-... ....+.
T Consensus 34 ~GsGKt~l~~~~~~~~~~~g~~~~y~~-~e~------~~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~ 105 (234)
T PRK06067 34 HGTGKSVLSQQFVYGALKQGKKVYVIT-TEN------TSKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEGFEWNSTLA 105 (234)
T ss_pred CCCChHHHHHHHHHHHHhCCCEEEEEE-cCC------CHHHHHHHHH-HCCCChhHHHhCCCceEEeccccccccCcchH
Confidence 799999999999764323333445554 322 4444444432 2210000 011223
Q ss_pred hhhHHHHHHHhcC-ceEEEEEeCCC
Q 040234 63 YDGINMLRVRLRR-KKVLVVIDDAA 86 (377)
Q Consensus 63 ~~~~~~l~~~l~~-k~~LLVLDdv~ 86 (377)
+...+.+.+.+.. +.-++|+|.+.
T Consensus 106 ~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 106 NKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecHH
Confidence 4556666666654 56689999975
No 214
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.16 E-value=0.21 Score=53.06 Aligned_cols=101 Identities=24% Similarity=0.252 Sum_probs=49.8
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCce-EE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKK-VL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~-~L 79 (377)
+.|+|||+||+.+++.+-..-...+-+ +++.....+ .... +.+...... ..++ ...+.+.++.++ -+
T Consensus 547 p~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~-~~~~--------l~g~~~gyv-g~~~-~~~l~~~~~~~p~~V 614 (821)
T CHL00095 547 PTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKH-TVSK--------LIGSPPGYV-GYNE-GGQLTEAVRKKPYTV 614 (821)
T ss_pred CCCCcHHHHHHHHHHHhcCCccceEEE-Echhccccc-cHHH--------hcCCCCccc-CcCc-cchHHHHHHhCCCeE
Confidence 479999999999998654322222222 244332111 1111 111111000 0111 123444555554 58
Q ss_pred EEEeCCCC--hhhhhHhhCCCCCC-----------CCCCeEEEEecc
Q 040234 80 VVIDDAAH--PDHLRRLVGEPDWF-----------GPGSRIIITTRN 113 (377)
Q Consensus 80 LVLDdv~~--~~~~~~l~~~l~~~-----------~~gs~IIvTTR~ 113 (377)
++||+++. .+.++.|+..+... ...+-+|+||..
T Consensus 615 vllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 615 VLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred EEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 99999975 44555555544331 234557777764
No 215
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.16 E-value=0.29 Score=47.91 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc-----cCccchhhh------HHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-----NNIRNVYDG------INMLR 70 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~------~~~l~ 70 (377)
+|+|||||+.+++.......+..+-+..+++..+ .+.++++.+...-..... ....+...+ .-.+-
T Consensus 153 ~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~r---Ev~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiA 229 (463)
T PRK09280 153 AGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMA 229 (463)
T ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH---HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6999999999998855444344444444555431 444555555432110000 001111110 11123
Q ss_pred HHh---cCceEEEEEeCCCC
Q 040234 71 VRL---RRKKVLVVIDDAAH 87 (377)
Q Consensus 71 ~~l---~~k~~LLVLDdv~~ 87 (377)
+++ +++++||++|++-.
T Consensus 230 Eyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 230 EYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHhcCCceEEEecchHH
Confidence 333 67899999999854
No 216
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.08 E-value=0.1 Score=42.24 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+.....
T Consensus 7 ~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp STTSSHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 589999999999987544
No 217
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.61 Score=46.59 Aligned_cols=142 Identities=16% Similarity=0.124 Sum_probs=76.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|.|||.||+.+++.....|-....- .++... .+ .+.....+.+....+..+..|
T Consensus 284 pPGtGKT~lAkava~~~~~~fi~v~~~--------------~l~sk~----vG------esek~ir~~F~~A~~~~p~ii 339 (494)
T COG0464 284 PPGTGKTLLAKAVALESRSRFISVKGS--------------ELLSKW----VG------ESEKNIRELFEKARKLAPSII 339 (494)
T ss_pred CCCCCHHHHHHHHHhhCCCeEEEeeCH--------------HHhccc----cc------hHHHHHHHHHHHHHcCCCcEE
Confidence 589999999999999666655322111 111111 11 122223334444446678999
Q ss_pred EEeCCCCh-------------hhhhHhhCCCCCCC--CCCeEEEEecchhHHhh---C--CCCCeeecCCCChhhhHHHH
Q 040234 81 VIDDAAHP-------------DHLRRLVGEPDWFG--PGSRIIITTRNEHLLKL---H--PVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 81 VLDdv~~~-------------~~~~~l~~~l~~~~--~gs~IIvTTR~~~v~~~---~--~~~~~~~l~~L~~~ea~~L~ 140 (377)
.+|+++.. .....++..+.... .+-.||-||-.+..... . .-...+.+++-+.++..++|
T Consensus 340 FiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~ 419 (494)
T COG0464 340 FIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIF 419 (494)
T ss_pred EEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHH
Confidence 99998642 12333333332222 23334555544433221 1 23567889999999999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 141 CLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
..+....... -...-..+.+++...|
T Consensus 420 ~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 420 KIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 9888533321 0112234455555555
No 218
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.96 E-value=1.3 Score=42.68 Aligned_cols=101 Identities=16% Similarity=0.083 Sum_probs=68.4
Q ss_pred eEEEEEeCCCC-----------hhhhhHhhCCCCCCCCCCeEEEEecchhH----HhhCC--CCCeeecCCCChhhhHHH
Q 040234 77 KVLVVIDDAAH-----------PDHLRRLVGEPDWFGPGSRIIITTRNEHL----LKLHP--VKKVYKLEALTYDEAFRL 139 (377)
Q Consensus 77 ~~LLVLDdv~~-----------~~~~~~l~~~l~~~~~gs~IIvTTR~~~v----~~~~~--~~~~~~l~~L~~~ea~~L 139 (377)
+=++||||..+ ..+|...+.. .+-.+||++|-+... ...++ ..+.+.|...+++.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 56899999643 2356665544 455689988876543 33443 357789999999999999
Q ss_pred HHHHhcCCCCC------------------chhHHHHHHHHHHHhCCCCchhhHHHHHhhhhc
Q 040234 140 LCLKAFDTHKP------------------LEEYVELAESVVRICHCQKSTLNALMSVSYTVS 183 (377)
Q Consensus 140 ~~~~~~~~~~~------------------~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~~ 183 (377)
...+....... .....+.....+..+|| ==+-|..++.++.+
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGG--RltDLe~lvrRiks 284 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGG--RLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCC--cHHHHHHHHHHHHc
Confidence 98887543110 02345567788889999 77777777776544
No 219
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.93 E-value=0.074 Score=45.00 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=22.7
Q ss_pred CCCCcHHHHHHHHHchhc-cccccceEEecchhhc
Q 040234 1 MGGLGKTTLARVVYDLIS-HEFDGSSFLADVREKC 34 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~-~~f~~~~w~~~~~~~~ 34 (377)
+.|+|||.||+.+++.+. +.....+-+. +++..
T Consensus 11 psGvGKT~la~~la~~l~~~~~~~~~~~d-~s~~~ 44 (171)
T PF07724_consen 11 PSGVGKTELAKALAELLFVGSERPLIRID-MSEYS 44 (171)
T ss_dssp STTSSHHHHHHHHHHHHT-SSCCEEEEEE-GGGHC
T ss_pred CCCCCHHHHHHHHHHHhccCCccchHHHh-hhccc
Confidence 479999999999999776 4444434333 55553
No 220
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.92 E-value=0.27 Score=44.75 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+||||++..+.+.+...-...+.+.+..+. .... ..++ ...........+.++..|+..+=.++
T Consensus 89 tGSGKTT~l~all~~i~~~~~~iitiEdp~E~-----~~~~-----~~q~----~v~~~~~~~~~~~l~~~lR~~PD~i~ 154 (264)
T cd01129 89 TGSGKTTTLYSALSELNTPEKNIITVEDPVEY-----QIPG-----INQV----QVNEKAGLTFARGLRAILRQDPDIIM 154 (264)
T ss_pred CCCcHHHHHHHHHhhhCCCCCeEEEECCCcee-----cCCC-----ceEE----EeCCcCCcCHHHHHHHHhccCCCEEE
Confidence 59999999998887664321122233221111 0000 0000 00111112456778888888888999
Q ss_pred EeCCCChhhhhHhhC
Q 040234 82 IDDAAHPDHLRRLVG 96 (377)
Q Consensus 82 LDdv~~~~~~~~l~~ 96 (377)
++++.+.+....+..
T Consensus 155 vgEiR~~e~a~~~~~ 169 (264)
T cd01129 155 VGEIRDAETAEIAVQ 169 (264)
T ss_pred eccCCCHHHHHHHHH
Confidence 999999876554433
No 221
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.90 E-value=0.48 Score=39.92 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
++|+||||++..++....+.
T Consensus 8 ~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 48999999999999866554
No 222
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.88 E-value=0.37 Score=43.79 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHchhc---cccccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLIS---HEFDGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~---~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
.|+|||+|+..++++.. +.-...+-+..+++..+ ...++...+..
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~r---ev~e~~~~~~~ 125 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITME---DARFFKDDFEE 125 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccH---HHHHHHHHhhh
Confidence 68999999999987543 11123333333666542 44555555443
No 223
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=2.6 Score=40.79 Aligned_cols=53 Identities=8% Similarity=-0.054 Sum_probs=35.7
Q ss_pred CCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhhh
Q 040234 123 KKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYTV 182 (377)
Q Consensus 123 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~ 182 (377)
...+.+.--+.+.-..|+..+.+... + ..+..+|.+...+ --+.-..++..+.
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~--~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEE--TEVTPAQVAEELM 414 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhc--CccCHHHHHHHHh
Confidence 45677888888888889888885433 2 3456667777777 6666556666543
No 224
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.71 E-value=0.31 Score=43.03 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEEE
Q 040234 3 GLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVVI 82 (377)
Q Consensus 3 GiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLVL 82 (377)
|.|||+|++.+.+++.+.... .|. +... ++. ++..+.+.++. ..+|++|..
T Consensus 95 GtGKSSLVKA~~~e~~~~glr--LVE-V~k~-----dl~-------------------~Lp~l~~~Lr~--~~~kFIlFc 145 (287)
T COG2607 95 GTGKSSLVKALLNEYADEGLR--LVE-VDKE-----DLA-------------------TLPDLVELLRA--RPEKFILFC 145 (287)
T ss_pred CCChHHHHHHHHHHHHhcCCe--EEE-EcHH-----HHh-------------------hHHHHHHHHhc--CCceEEEEe
Confidence 889999999999877776544 222 3222 111 11122222222 467999999
Q ss_pred eCCC---ChhhhhHhhCCCCCC---CCCCeEEEEecc
Q 040234 83 DDAA---HPDHLRRLVGEPDWF---GPGSRIIITTRN 113 (377)
Q Consensus 83 Ddv~---~~~~~~~l~~~l~~~---~~gs~IIvTTR~ 113 (377)
||.. +.+.++.+...+..+ .+...++..|.+
T Consensus 146 DDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 146 DDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred cCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 9983 344566665554432 334445544443
No 225
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.71 E-value=0.37 Score=47.05 Aligned_cols=44 Identities=30% Similarity=0.402 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLL 48 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~ 48 (377)
+|+|||+|+.+++.......+..+-+..+++..+ .+.++++.+.
T Consensus 152 ~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~r---Ev~ef~~~~~ 195 (461)
T TIGR01039 152 AGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMK 195 (461)
T ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEEEecCCch---HHHHHHHHHH
Confidence 6999999999998855443344444444655431 4445555553
No 226
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.58 E-value=3.3 Score=38.40 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=57.5
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEec-chhHHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTR-NEHLLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR-~~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+.+=++|+|+++.. ...+.|+..+..-.+.+.+|++|. ...+... ......+++.++++++..+.+... + .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~----~ 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N----K 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C----C
Confidence 46678999998763 335555555544355666666554 3444433 345788999999999998877654 1 1
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
. .+.+..++...+| .--|+..+.
T Consensus 164 ~---~~~a~~~a~~~~~--~~~a~~~~~ 186 (299)
T PRK07132 164 E---KEYNWFYAYIFSN--FEQAEKYIN 186 (299)
T ss_pred C---hhHHHHHHHHcCC--HHHHHHHHh
Confidence 1 2345556666666 555555443
No 227
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.51 E-value=0.27 Score=44.82 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
++|+||||+|+++...+.+
T Consensus 9 ~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 4899999999999986554
No 228
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.45 E-value=0.35 Score=39.55 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|.|||||++.++...+. ..+.+++....... -+.+ .+.-+...-.+-+.+..++-+++
T Consensus 35 nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~----~~~~----------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 35 NGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIG----YFEQ----------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred CCCCHHHHHHHHcCCCCC-CceEEEECCeEEEE----EEcc----------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 699999999999984432 24445554210000 0000 11111222233445556677899
Q ss_pred EeCCCC---hhhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 82 IDDAAH---PDHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 82 LDdv~~---~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+|+.-. ......+...+... +..||++|.+.....
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 999743 22222222222111 246888888765544
No 229
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.38 E-value=0.6 Score=39.68 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHH------HHHHHHHHHhhcc--cc---CccchhhhHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVIS------LQKQLLSDLLKLA--DN---NIRNVYDGINMLR 70 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~------~~~~i~~~l~~~~--~~---~~~~~~~~~~~l~ 70 (377)
.|+|||||++.++..... ..+.+++... +.. .. +... ...++++.++... .. ..+.-+...-.+-
T Consensus 34 nGsGKStLl~~i~G~~~~-~~G~v~~~g~-~~~-~~-~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~la 109 (180)
T cd03214 34 NGAGKSTLLKTLAGLLKP-SSGEILLDGK-DLA-SL-SPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLA 109 (180)
T ss_pred CCCCHHHHHHHHhCCCCC-CCcEEEECCE-ECC-cC-CHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 699999999999985432 3444555311 100 00 1111 1111333322111 01 1111122223345
Q ss_pred HHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 71 VRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 71 ~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+.+...+-+++||+.-. .+ .+..++..+.. ..+..||++|.+.....
T Consensus 110 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 110 RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH
Confidence 55667788999999743 22 22222222211 11567888888766543
No 230
>PRK08233 hypothetical protein; Provisional
Probab=92.34 E-value=0.25 Score=41.79 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+||||||..++..+.
T Consensus 11 ~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 379999999999998653
No 231
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.26 E-value=0.15 Score=43.66 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||+++.+++..+.
T Consensus 40 ~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 40 PPGSGKTTLALQLAAALA 57 (193)
T ss_dssp CSTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999988543
No 232
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.22 E-value=0.12 Score=42.89 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
++|+||||||+.+.+++.+.-....++
T Consensus 10 lsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 589999999999999887664444443
No 233
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.20 E-value=1.8 Score=40.27 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=76.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCc---cchhhhHHHHHHHhc---
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNI---RNVYDGINMLRVRLR--- 74 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~l~~~l~--- 74 (377)
+.|.|||+|......+ .+.+.....++.+.+... .-+-+++.|.+++........ .+..+-...+-..|+
T Consensus 57 prgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~---~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~ 132 (408)
T KOG2228|consen 57 PRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQ---TDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGD 132 (408)
T ss_pred cCCCCceEeeHHHHhh-HHhcCCeEEEEEECccch---hhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCC
Confidence 3699999998777765 445555455544544331 112245555555543322111 222233333444443
Q ss_pred ---CceEEEEEeCCCCh----hh---hhHhhCCCCCCCCCCeEEEEecch-------hHHhhCCCCCeeecCCCChhhhH
Q 040234 75 ---RKKVLVVIDDAAHP----DH---LRRLVGEPDWFGPGSRIIITTRNE-------HLLKLHPVKKVYKLEALTYDEAF 137 (377)
Q Consensus 75 ---~k~~LLVLDdv~~~----~~---~~~l~~~l~~~~~gs~IIvTTR~~-------~v~~~~~~~~~~~l~~L~~~ea~ 137 (377)
.-++..|+|..+-- .| ++.+-..-....|-|-|-+|||-. .|-.+.+-..++-++.++-++-.
T Consensus 133 ~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv 212 (408)
T KOG2228|consen 133 ETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYV 212 (408)
T ss_pred CCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHH
Confidence 23688889887641 11 222222222235667788999953 33333333345566778889999
Q ss_pred HHHHHHhc
Q 040234 138 RLLCLKAF 145 (377)
Q Consensus 138 ~L~~~~~~ 145 (377)
.+++....
T Consensus 213 ~l~r~ll~ 220 (408)
T KOG2228|consen 213 DLYRKLLS 220 (408)
T ss_pred HHHHHHhc
Confidence 99888764
No 234
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.18 E-value=0.084 Score=45.75 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=20.4
Q ss_pred eEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEec
Q 040234 77 KVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTR 112 (377)
Q Consensus 77 ~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR 112 (377)
.-+||+|++.- ..++..+..... ..+.++|+.--
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD 129 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGD 129 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-
T ss_pred ccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 34999999875 346666665544 24778876654
No 235
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=92.16 E-value=0.43 Score=44.80 Aligned_cols=34 Identities=29% Similarity=0.654 Sum_probs=25.2
Q ss_pred eEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecc
Q 040234 77 KVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRN 113 (377)
Q Consensus 77 ~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~ 113 (377)
+-++|+|.+.+ ..++..+... .+.|+||+.|---
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~ 387 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDP 387 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCH
Confidence 45899999988 4566666544 2889999988653
No 236
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.12 E-value=0.52 Score=41.74 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=18.9
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+|||+||.+++......-..++|+.
T Consensus 29 ~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 29 PGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 699999999988764333334556665
No 237
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=92.12 E-value=0.52 Score=49.67 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=26.2
Q ss_pred CCeEEEEecchhHHhhC-CCCCeeecCCCChhhhHHHHHHHh
Q 040234 104 GSRIIITTRNEHLLKLH-PVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 104 gs~IIvTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
+.-+|.|+....+...+ .....+++.+++.++-.++..++.
T Consensus 465 ~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 465 DVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44455666544332222 334678999999999988877665
No 238
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.11 E-value=0.95 Score=41.16 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHHHchhccc-cccceEEecchhhcccccCHHHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHE-FDGSSFLADVREKCDKEGSVISLQKQLLSDL 51 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l 51 (377)
+|+|||+|+.+++...... -..++|+. +-. ...++...+...+
T Consensus 39 ~G~GKT~l~~~~~~~~~~~~g~~vl~iS-~E~------~~~~~~~r~~~~~ 82 (271)
T cd01122 39 TGVGKTTFLREYALDLITQHGVRVGTIS-LEE------PVVRTARRLLGQY 82 (271)
T ss_pred CCCCHHHHHHHHHHHHHHhcCceEEEEE-ccc------CHHHHHHHHHHHH
Confidence 6999999999998865333 23455554 222 4455666655544
No 239
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.07 E-value=0.33 Score=46.41 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+|||||+.+++......-..++|+.
T Consensus 91 pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 91 PGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 799999999999986654433444544
No 240
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.06 E-value=0.098 Score=41.36 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+||||||+++.++.
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999975
No 241
>PRK04328 hypothetical protein; Provisional
Probab=91.99 E-value=0.34 Score=43.64 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+|||+||.+++.+-...-..++|+.
T Consensus 32 pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 32 PGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 799999999998775333334556665
No 242
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.91 E-value=0.69 Score=41.14 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=17.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.|+||||||.+++......-..++++.
T Consensus 33 ~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 33 ESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 799999999777764422223345544
No 243
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=2.6 Score=43.70 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=58.6
Q ss_pred CceEEEEEeCCCCh-----------------hhhhHhhCCCCCCCCCCeE--EEEecchhHHhhC-----CCCCeeecCC
Q 040234 75 RKKVLVVIDDAAHP-----------------DHLRRLVGEPDWFGPGSRI--IITTRNEHLLKLH-----PVKKVYKLEA 130 (377)
Q Consensus 75 ~k~~LLVLDdv~~~-----------------~~~~~l~~~l~~~~~gs~I--IvTTR~~~v~~~~-----~~~~~~~l~~ 130 (377)
..+..+-+|+++.. ..++.|+...........| |.+|+..++.... .-++.+.++.
T Consensus 402 ~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~ 481 (774)
T KOG0731|consen 402 NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDL 481 (774)
T ss_pred cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccC
Confidence 45677888876531 2356666655544333333 3455555443221 2366788888
Q ss_pred CChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhH
Q 040234 131 LTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 131 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal 174 (377)
-+...-.++|.-++...... .+..++.+ |+...-| .+-|-
T Consensus 482 p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~g--f~gad 521 (774)
T KOG0731|consen 482 PDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPG--FSGAD 521 (774)
T ss_pred CchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCC--CcHHH
Confidence 88888999998888543332 34456666 8888888 77664
No 244
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.68 E-value=0.59 Score=39.17 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEec------chhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcC
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLAD------VREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRR 75 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~------~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 75 (377)
.|+|||||++.++..... ..+.+++.. +.+... . ....+...+... . ....+.-+...-.+.+.+..
T Consensus 36 nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~-~-~~~tv~~nl~~~---~-~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 36 SGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPY-L-PLGTLREQLIYP---W-DDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred CCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCc-c-ccccHHHHhhcc---C-CCCCCHHHHHHHHHHHHHHc
Confidence 699999999999984432 123233221 111110 0 111222222110 1 11112222233334455566
Q ss_pred ceEEEEEeCCCC---hhhhhHhhCCCCCCCCCCeEEEEecchhHH
Q 040234 76 KKVLVVIDDAAH---PDHLRRLVGEPDWFGPGSRIIITTRNEHLL 117 (377)
Q Consensus 76 k~~LLVLDdv~~---~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~ 117 (377)
++=+++||+--. .+..+.+...+... +..||++|.+....
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 777889999643 22222222222111 35688888877654
No 245
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.67 E-value=0.28 Score=46.31 Aligned_cols=14 Identities=36% Similarity=0.226 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||+|+.+++-
T Consensus 135 ~GsGKTql~lqlav 148 (344)
T PLN03187 135 FRSGKTQLAHTLCV 148 (344)
T ss_pred CCCChhHHHHHHHH
Confidence 79999999998864
No 246
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=91.64 E-value=1 Score=38.55 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=36.4
Q ss_pred hhHHHHHHHhcCceEEEEEeCC----CChhhhh--HhhCCCCCCCCCCeEEEEecchhHHhhC
Q 040234 64 DGINMLRVRLRRKKVLVVIDDA----AHPDHLR--RLVGEPDWFGPGSRIIITTRNEHLLKLH 120 (377)
Q Consensus 64 ~~~~~l~~~l~~k~~LLVLDdv----~~~~~~~--~l~~~l~~~~~gs~IIvTTR~~~v~~~~ 120 (377)
+..-.+-+.+-+++-||+-|.- +..-.|+ .+...+. ..|..||++|.+..+...+
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhc
Confidence 3344456677788899999974 3333343 2333332 5689999999999887765
No 247
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.63 E-value=1.1 Score=37.90 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999999855
No 248
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.47 E-value=0.43 Score=44.67 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+|||+||.+++...
T Consensus 110 ~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 110 EFGSGKTQICHQLAVNV 126 (317)
T ss_pred CCCCCHhHHHHHHHHHh
Confidence 37999999999998743
No 249
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=1.9 Score=38.02 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=31.0
Q ss_pred HhcCceEEEEEeCCCCh---hhhhHh---hCCCCCCCCCCeEEEEecchhHHhhCCCCC
Q 040234 72 RLRRKKVLVVIDDAAHP---DHLRRL---VGEPDWFGPGSRIIITTRNEHLLKLHPVKK 124 (377)
Q Consensus 72 ~l~~k~~LLVLDdv~~~---~~~~~l---~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~ 124 (377)
.+-=++-|.|||..++- +.++.+ ...+. .+++.+|+.|..+.++.......
T Consensus 158 ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 158 LLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred HHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCE
Confidence 33446779999999873 222221 11222 34777888888888887765433
No 250
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.31 E-value=0.34 Score=41.27 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
.+|+||||+|+.++++
T Consensus 8 ~pGaGK~T~A~~La~~ 23 (178)
T COG0563 8 PPGAGKSTLAKKLAKK 23 (178)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3799999999999996
No 251
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.29 E-value=0.95 Score=43.47 Aligned_cols=19 Identities=26% Similarity=0.123 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||++..++..+..
T Consensus 249 ptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 3799999999999986543
No 252
>PRK10867 signal recognition particle protein; Provisional
Probab=91.21 E-value=0.56 Score=45.77 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+||||+|..++...+..
T Consensus 108 ~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 47999999998888755544
No 253
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.16 E-value=0.56 Score=45.78 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHchhc-cccccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLIS-HEFDGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~-~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
+|+|||+|+.++++... .+-+..++. .+++..+ .+.++.+.+..
T Consensus 147 ~G~GKt~l~~~~~~~~~~~~~~v~V~~-~iGeR~r---Ev~e~~~~~~~ 191 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMVGQHQGVSIFC-GIGERCR---EGEELYREMKE 191 (449)
T ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEE-EeccCcH---HHHHHHHHHhh
Confidence 69999999999988543 322344443 3655431 44455555443
No 254
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.13 E-value=0.096 Score=41.75 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=16.3
Q ss_pred CCCcHHHHHHHHHchhcccccc
Q 040234 2 GGLGKTTLARVVYDLISHEFDG 23 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~ 23 (377)
+|+|||+||+.++..+...|..
T Consensus 8 PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 8 PGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp --HHHHHHHHHHHHHTT--EEE
T ss_pred CccHHHHHHHHHHHHcCCceeE
Confidence 7999999999999988888865
No 255
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.05 E-value=0.49 Score=42.55 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
++|+||||+|+.+++....
T Consensus 7 ~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 5899999999999986643
No 256
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.04 E-value=1.3 Score=36.46 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+||||||+.+...+.
T Consensus 7 ~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 7 LSGSGKSTIARALEEKLF 24 (149)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 379999999999998654
No 257
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=90.96 E-value=0.96 Score=42.62 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+++.+.+.+.
T Consensus 7 l~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 7 LPAAGKSTLARSLSATLR 24 (340)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 589999999999998654
No 258
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.94 E-value=0.65 Score=45.41 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
..|+||||+|..++..++..
T Consensus 103 ~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHc
Confidence 47999999999999866543
No 259
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=90.93 E-value=4.1 Score=41.65 Aligned_cols=162 Identities=13% Similarity=0.114 Sum_probs=85.6
Q ss_pred CCCcHHHHHHHHHchhc-----cccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhc--
Q 040234 2 GGLGKTTLARVVYDLIS-----HEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLR-- 74 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~-----~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-- 74 (377)
+|.|||..+..|.+.++ ..-+.-.++. +... ..+...++...|..++.+... ......+.+..++.
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-INgm--~l~~~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQKELPKFDYVE-INGL--RLASPREIYEKIWEALSGERV----TWDAALEALNFRFTVP 503 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ecce--eecCHHHHHHHHHHhcccCcc----cHHHHHHHHHHhhccC
Confidence 69999999999998443 1222222222 2211 111677888888888766543 33444555555554
Q ss_pred ---CceEEEEEeCCCCh-----hhhhHhhCCCCCCCCCCeEEEEecc-------h----hHHhhCCCCCeeecCCCChhh
Q 040234 75 ---RKKVLVVIDDAAHP-----DHLRRLVGEPDWFGPGSRIIITTRN-------E----HLLKLHPVKKVYKLEALTYDE 135 (377)
Q Consensus 75 ---~k~~LLVLDdv~~~-----~~~~~l~~~l~~~~~gs~IIvTTR~-------~----~v~~~~~~~~~~~l~~L~~~e 135 (377)
.+..+|++|+++.. +.+-.+..-.. .++++++|.+=. + .+...++ ...+...+.+.++
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~q 580 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQ 580 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcc-ceeeecCCCCHHH
Confidence 35789999998652 23333322211 467776654421 1 1122222 3446677777777
Q ss_pred hHHHHHHHhcCCCC-CchhHHHHHHHHHHHhCCCCchhhHH
Q 040234 136 AFRLLCLKAFDTHK-PLEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 136 a~~L~~~~~~~~~~-~~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
-.++...+...... .....+-++++++...|- .-.|+.
T Consensus 581 Lq~Ii~~RL~~~~~f~~~aielvarkVAavSGD--aRrald 619 (767)
T KOG1514|consen 581 LQEIISARLKGLDAFENKAIELVARKVAAVSGD--ARRALD 619 (767)
T ss_pred HHHHHHHhhcchhhcchhHHHHHHHHHHhcccc--HHHHHH
Confidence 77766655532211 122233344455554554 444443
No 260
>PRK03839 putative kinase; Provisional
Probab=90.89 E-value=0.15 Score=43.34 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
|+|+||||+|+.++++..
T Consensus 8 ~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999999764
No 261
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=90.88 E-value=0.47 Score=41.87 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
||.||||++..++..+..+=..+..+
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lI 36 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALI 36 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 89999999999999765543333333
No 262
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.73 E-value=0.57 Score=42.50 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=19.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+|||+||.+++..-...=..++++.
T Consensus 44 ~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 44 VSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3799999999998774333333456655
No 263
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.60 E-value=1 Score=43.88 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+||||+|..++....
T Consensus 107 ~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 479999999999988653
No 264
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.56 E-value=0.63 Score=43.39 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||+|+.+++...
T Consensus 104 ~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 104 FGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7999999999998754
No 265
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.56 E-value=0.61 Score=47.57 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=35.7
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh--cCceE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL--RRKKV 78 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~k~~ 78 (377)
++|+||||||.-++++-. |.. +=+. .++.. ....+-..|...+... ..+ .+++.
T Consensus 334 ppGlGKTTLAHViAkqaG--YsV-vEIN-ASDeR----t~~~v~~kI~~avq~~----------------s~l~adsrP~ 389 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAG--YSV-VEIN-ASDER----TAPMVKEKIENAVQNH----------------SVLDADSRPV 389 (877)
T ss_pred CCCCChhHHHHHHHHhcC--ceE-EEec-ccccc----cHHHHHHHHHHHHhhc----------------cccccCCCcc
Confidence 489999999999998432 211 1122 33322 3334444444433221 112 25788
Q ss_pred EEEEeCCCCh
Q 040234 79 LVVIDDAAHP 88 (377)
Q Consensus 79 LLVLDdv~~~ 88 (377)
-||+|.++-.
T Consensus 390 CLViDEIDGa 399 (877)
T KOG1969|consen 390 CLVIDEIDGA 399 (877)
T ss_pred eEEEecccCC
Confidence 8999999863
No 266
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=90.53 E-value=0.94 Score=46.13 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=21.4
Q ss_pred EEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecc
Q 040234 79 LVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRN 113 (377)
Q Consensus 79 LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~ 113 (377)
+||+|.+.- ...+..+...+ .+++++|+.--.
T Consensus 262 vlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 262 VLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred EEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 899999864 44566666665 356788776543
No 267
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=90.46 E-value=0.56 Score=42.25 Aligned_cols=105 Identities=22% Similarity=0.180 Sum_probs=55.3
Q ss_pred CCCcHHHHHHHHHchhc-cccccceEEecchhhcccccCHHHHHHHHHHHHhh------------------------c-c
Q 040234 2 GGLGKTTLARVVYDLIS-HEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLK------------------------L-A 55 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~-~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~------------------------~-~ 55 (377)
||+||||.+..++..+. ..+..++.=.|+... ++-.++..--+.... . .
T Consensus 57 GGVGKSTvt~nla~~La~~g~~vglLD~Dl~GP-----SiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~~~~ 131 (300)
T KOG3022|consen 57 GGVGKSTVTVNLALALASEGKKVGLLDADLCGP-----SIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLKPRD 131 (300)
T ss_pred CCCchhHHHHHHHHHHhcCCCcEEEEeecccCC-----CchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeecCCCC
Confidence 89999999999998655 445555555545443 222222111111000 0 0
Q ss_pred ccCccchhhhHHHHHHHhcCceE----EEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 56 DNNIRNVYDGINMLRVRLRRKKV----LVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 56 ~~~~~~~~~~~~~l~~~l~~k~~----LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
....+.-......+++.|++..| .||+|=--.. +++. +...++. . ...|||||-..
T Consensus 132 ~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls-~~~~~~~-~-~gAviVTTPQ~ 193 (300)
T KOG3022|consen 132 DSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLS-LVQFLRE-S-DGAVIVTTPQE 193 (300)
T ss_pred ccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhh-eeecccc-c-CceEEEeCchh
Confidence 01112223446678899988877 7888875332 2222 2222221 1 33799999754
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.37 E-value=0.6 Score=39.00 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||||.+.++.... ...+.+++... ... .. +..... -+.++ . ..+.+.-+...-.+-+.+..++-+++
T Consensus 35 nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~-~~-~~~~~~---~~~i~-~-~~qLS~G~~qrl~laral~~~p~ill 105 (163)
T cd03216 35 NGAGKSTLMKILSGLYK-PDSGEILVDGK-EVS-FA-SPRDAR---RAGIA-M-VYQLSVGERQMVEIARALARNARLLI 105 (163)
T ss_pred CCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECC-cC-CHHHHH---hcCeE-E-EEecCHHHHHHHHHHHHHhcCCCEEE
Confidence 69999999999998543 23455555421 110 00 111110 00111 0 00111222223334455566778899
Q ss_pred EeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 82 IDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 82 LDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
||+.-. .. .+..++..+. ..+..||++|.+.....
T Consensus 106 lDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 106 LDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVF 146 (163)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHH
Confidence 999743 22 2222222221 23667888888876443
No 269
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.35 E-value=0.23 Score=44.98 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchh
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVRE 32 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~ 32 (377)
||+||||+|..++..+..+-..++.+.|...
T Consensus 12 GGvGKTT~a~nLa~~La~~~~~kVLliDlDp 42 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRGGKKVLLIDLDP 42 (259)
T ss_pred CCccHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 8999999999999976633323344443433
No 270
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=90.31 E-value=0.7 Score=37.97 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+||||+|..++.+.
T Consensus 4 ~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHhc
Confidence 48999999999999854
No 271
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.28 E-value=1 Score=41.35 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||++..++.....
T Consensus 202 ptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3799999999999885543
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=90.28 E-value=0.42 Score=44.61 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=12.7
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
.+|+|||+|+.+++-
T Consensus 104 ~~GsGKTql~lqla~ 118 (313)
T TIGR02238 104 EFRCGKTQLSHTLCV 118 (313)
T ss_pred CCCCCcCHHHHHHHH
Confidence 379999999988774
No 273
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.28 E-value=0.19 Score=47.83 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+||||++..+.+.+....+...-+..+-+... . ....+... . ....+ .....+.......++..|+..+-.++
T Consensus 143 TGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-~-~~~~~~~~-~-~~v~Q-~~v~~~~~~~~~~l~~aLR~~Pd~i~ 217 (358)
T TIGR02524 143 TGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-F-VYDEIETI-S-ASVCQ-SEIPRHLNNFAAGVRNALRRKPHAIL 217 (358)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-E-eccccccc-c-ceeee-eeccccccCHHHHHHHHhccCCCEEe
Confidence 6999999999999866544332211111111110 0 11110000 0 00001 01111223456778888999999999
Q ss_pred EeCCCChhhhhHh
Q 040234 82 IDDAAHPDHLRRL 94 (377)
Q Consensus 82 LDdv~~~~~~~~l 94 (377)
+..+.+.+.....
T Consensus 218 vGEiRd~et~~~a 230 (358)
T TIGR02524 218 VGEARDAETISAA 230 (358)
T ss_pred eeeeCCHHHHHHH
Confidence 9999998776543
No 274
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=90.24 E-value=0.94 Score=41.20 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=42.9
Q ss_pred CCCcHHHHH-HHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc-----ccCccch----------hhh
Q 040234 2 GGLGKTTLA-RVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA-----DNNIRNV----------YDG 65 (377)
Q Consensus 2 gGiGKTtLA-~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~----------~~~ 65 (377)
+|+|||+|| ..+.++. +-+..+.+..+++..+ .+.++.+++...-.... .....+. -..
T Consensus 78 ~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~~---ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~ai 152 (274)
T cd01132 78 RQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKAS---TVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAM 152 (274)
T ss_pred CCCCccHHHHHHHHHhc--CCCeEEEEEecccchH---HHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence 579999996 5555532 2234434554555431 44555555543210000 0001111 112
Q ss_pred HHHHHHHhcCceEEEEEeCCCC-hhhhhHh
Q 040234 66 INMLRVRLRRKKVLVVIDDAAH-PDHLRRL 94 (377)
Q Consensus 66 ~~~l~~~l~~k~~LLVLDdv~~-~~~~~~l 94 (377)
++.++. +++..||++||+-. ...++.+
T Consensus 153 AE~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 153 GEYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 333333 57899999999965 3444444
No 275
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.24 E-value=0.65 Score=48.65 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+|||+||+.++..+.
T Consensus 496 P~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 496 PTGVGKTEVTVQLSKALG 513 (758)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999998663
No 276
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=90.17 E-value=0.54 Score=49.05 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=42.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc----ccCccchhhhHHHHHHHhcC-c
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA----DNNIRNVYDGINMLRVRLRR-K 76 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~~l~~-k 76 (377)
+|+||||||.+++......-...+|+. .-+.+ + ...+++++... -..+.+.+.....+...++. +
T Consensus 69 ~GsGKTtLal~~~~~a~~~G~~v~yId-~E~t~----~-----~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~ 138 (790)
T PRK09519 69 ESSGKTTVALHAVANAQAAGGVAAFID-AEHAL----D-----PDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEC-Cccch----h-----HHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 699999999887764433334456665 32222 2 12444443221 11223445556666665544 5
Q ss_pred eEEEEEeCCC
Q 040234 77 KVLVVIDDAA 86 (377)
Q Consensus 77 ~~LLVLDdv~ 86 (377)
.-|||+|.+.
T Consensus 139 ~~LVVIDSI~ 148 (790)
T PRK09519 139 LDIVVIDSVA 148 (790)
T ss_pred CeEEEEcchh
Confidence 6689999975
No 277
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.16 E-value=1.9 Score=36.30 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=29.6
Q ss_pred HHHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
.+-+.+..++=++++|+.-. . ..+..++..+. ..|..||++|.+.....
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 35556677888999999743 2 22223322222 23567888888876554
No 278
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.14 E-value=1.2 Score=39.76 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHchhccc-cccceEEecchhhcccccCHHHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHE-FDGSSFLADVREKCDKEGSVISLQKQLLSDL 51 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l 51 (377)
+|+|||++|.+++...... =..++|+. .-. ...+++..++...
T Consensus 22 ~G~GKT~~~~~~~~~~~~~~g~~vly~s-~E~------~~~~~~~r~~~~~ 65 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQGKPVLFFS-LEM------SKEQLLQRLLASE 65 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEe-CCC------CHHHHHHHHHHHh
Confidence 7999999999988754333 23445544 221 5556666665443
No 279
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=90.04 E-value=1.2 Score=45.45 Aligned_cols=103 Identities=21% Similarity=0.226 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHHHchhcccc---ccceEEecchhhcccccCHHHHHHHHHHHHhhcccc--CccchhhhHHHHHHHhcC-
Q 040234 2 GGLGKTTLARVVYDLISHEF---DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN--NIRNVYDGINMLRVRLRR- 75 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f---~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~- 75 (377)
+|.||||++..+...+.+.. ...+.+.+.+.. ...++.+.+...+...... ...........+.+.|..
T Consensus 176 pGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgk-----AA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~~ 250 (615)
T PRK10875 176 PGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGK-----AAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLGAQ 250 (615)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHH-----HHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhCcC
Confidence 79999999998887543322 234555433222 3333333333222111000 000111123444544432
Q ss_pred -----------ce---EEEEEeCCC--ChhhhhHhhCCCCCCCCCCeEEEEec
Q 040234 76 -----------KK---VLVVIDDAA--HPDHLRRLVGEPDWFGPGSRIIITTR 112 (377)
Q Consensus 76 -----------k~---~LLVLDdv~--~~~~~~~l~~~l~~~~~gs~IIvTTR 112 (377)
.+ =+||+|.+. +......+...++ +++|+|+---
T Consensus 251 ~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD 300 (615)
T PRK10875 251 PGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGD 300 (615)
T ss_pred CCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecc
Confidence 11 289999975 3445566666654 5678776554
No 280
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.02 E-value=0.76 Score=38.74 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=27.6
Q ss_pred HHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.+..++=+++||+.-. .. .+..++..+. ..|..||++|.+.....
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 4445556677899999743 22 2222322222 23667888888876554
No 281
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=3.5 Score=42.30 Aligned_cols=144 Identities=18% Similarity=0.122 Sum_probs=78.8
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+|||.||-+++..-.-+ ++. +.+. +++....+. +++...+.+.+.-.-++++|
T Consensus 709 ppGcGKT~la~a~a~~~~~~-----fis-vKGP------------ElL~KyIGa------SEq~vR~lF~rA~~a~PCiL 764 (952)
T KOG0735|consen 709 PPGCGKTLLASAIASNSNLR-----FIS-VKGP------------ELLSKYIGA------SEQNVRDLFERAQSAKPCIL 764 (952)
T ss_pred CCCCcHHHHHHHHHhhCCee-----EEE-ecCH------------HHHHHHhcc------cHHHHHHHHHHhhccCCeEE
Confidence 48999999999998743322 233 4332 233333222 34444555555556799999
Q ss_pred EEeCCCCh-------------hhhhHhhCCCCCC--CCCCeEEE-EecchhHHhhC----CCCCeeecCCCChhhhHHHH
Q 040234 81 VIDDAAHP-------------DHLRRLVGEPDWF--GPGSRIII-TTRNEHLLKLH----PVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 81 VLDdv~~~-------------~~~~~l~~~l~~~--~~gs~IIv-TTR~~~v~~~~----~~~~~~~l~~L~~~ea~~L~ 140 (377)
.+|..++. ..++.++..+... -.|--|+. |||-.-+-..+ +-.+.+.-+.-++.+-.++|
T Consensus 765 FFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il 844 (952)
T KOG0735|consen 765 FFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEIL 844 (952)
T ss_pred EeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHH
Confidence 99998753 1355666555432 23444554 55543221111 22444555556677777888
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHhCCCCchhh
Q 040234 141 CLKAFDTHKPLEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lpla 173 (377)
......-..+. ....+-++.+.+| ..-|
T Consensus 845 ~~ls~s~~~~~---~vdl~~~a~~T~g--~tgA 872 (952)
T KOG0735|consen 845 QVLSNSLLKDT---DVDLECLAQKTDG--FTGA 872 (952)
T ss_pred HHHhhccCCcc---ccchHHHhhhcCC--Cchh
Confidence 76663211111 2234567777787 5544
No 282
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.01 E-value=0.99 Score=38.36 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=17.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
.|+|||||++.++.-.+. ..+.+.+
T Consensus 34 nGsGKSTLl~~l~Gl~~p-~~G~i~~ 58 (177)
T cd03222 34 NGTGKTTAVKILAGQLIP-NGDNDEW 58 (177)
T ss_pred CCChHHHHHHHHHcCCCC-CCcEEEE
Confidence 699999999999974322 2344444
No 283
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=90.00 E-value=0.93 Score=44.70 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
+|+|||+|+..+...+.+..++.+-+..+++..+ .+.+++..++.
T Consensus 170 ~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgr---Ev~efi~~~~~ 214 (494)
T CHL00060 170 AGVGKTVLIMELINNIAKAHGGVSVFGGVGERTR---EGNDLYMEMKE 214 (494)
T ss_pred CCCChhHHHHHHHHHHHHhcCCeEEEEEeccCch---HHHHHHHHHHh
Confidence 6999999999988864333234444444665432 44455555544
No 284
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.91 E-value=0.17 Score=39.04 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
.+|+|||+||..++..+.+++
T Consensus 6 ~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 379999999999998666544
No 285
>PRK00625 shikimate kinase; Provisional
Probab=89.86 E-value=0.22 Score=42.23 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
|+|+||||+++.+++++.
T Consensus 8 ~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLS 25 (173)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999998664
No 286
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.76 E-value=0.7 Score=45.47 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+|||||+.+++.....+-..++|+.
T Consensus 89 pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 89 PGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 699999999999986543323345554
No 287
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=89.72 E-value=0.83 Score=40.25 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=52.2
Q ss_pred CCCCcHHHHHHHHHchhcc---cc-ccceEEecchhhc-ccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcC
Q 040234 1 MGGLGKTTLARVVYDLISH---EF-DGSSFLADVREKC-DKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRR 75 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~---~f-~~~~w~~~~~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 75 (377)
.+|+|||||.+.+++-+.. .| +.++-+.|.+..- ......-++ .+..++... ......+.....+++ -
T Consensus 145 pP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~--~~g~R~dVl--d~cpk~~gmmmaIrs---m 217 (308)
T COG3854 145 PPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH--GRGRRMDVL--DPCPKAEGMMMAIRS---M 217 (308)
T ss_pred CCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh--hhhhhhhhc--ccchHHHHHHHHHHh---c
Confidence 4799999999999984332 34 3445554443321 000000000 011111000 000111222333332 2
Q ss_pred ceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhH
Q 040234 76 KKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHL 116 (377)
Q Consensus 76 k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v 116 (377)
.+=++|+|.+-..++..+++..+ ..|-++|.|..--.+
T Consensus 218 ~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 218 SPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred CCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 46689999998876666555553 457778777764433
No 288
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=89.65 E-value=0.63 Score=49.55 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCCcHHHHHHHHHchhccc-c---ccceEEecchhhc--ccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcC
Q 040234 2 GGLGKTTLARVVYDLISHE-F---DGSSFLADVREKC--DKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRR 75 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~-f---~~~~w~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 75 (377)
+|.||||+.+.++-....+ + +.-+++. +.... ..+..-..+...+...+.... ...+......+.+..
T Consensus 231 pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~-----~~~~~~~~~~e~l~~ 304 (824)
T COG5635 231 PGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQG-----IAKQLIEAHQELLKT 304 (824)
T ss_pred CCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccC-----CcchhhHHHHHHHhc
Confidence 6999999999988732222 1 2223332 22110 000000023333333322221 112222333678889
Q ss_pred ceEEEEEeCCCChh---------hhhHhhCCCCCCCCCCeEEEEecchhHHhhCCCCCeeecCCCChhhh
Q 040234 76 KKVLVVIDDAAHPD---------HLRRLVGEPDWFGPGSRIIITTRNEHLLKLHPVKKVYKLEALTYDEA 136 (377)
Q Consensus 76 k~~LLVLDdv~~~~---------~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~~L~~~ea 136 (377)
.+.|+++|.++... .+..+.+. -+.+++|+|+|....-....+-...++..+.++.-
T Consensus 305 g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i 370 (824)
T COG5635 305 GKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQI 370 (824)
T ss_pred cchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHH
Confidence 99999999987632 23444444 56889999998654433332333344555554433
No 289
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.64 E-value=0.77 Score=45.23 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=19.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+|||||+.+++......-..++|+.
T Consensus 103 pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 699999999999876544323345554
No 290
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=89.58 E-value=1.1 Score=43.70 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc-----cCccch----------hhhH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-----NNIRNV----------YDGI 66 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~----------~~~~ 66 (377)
.|+|||||++.+++.... + .+.+..+++..+ .+.++.+.++..-..... ....+. -..+
T Consensus 171 sG~GKSTLL~~I~~~~~~--d-v~Vi~lIGER~r---Ev~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiA 244 (444)
T PRK08972 171 SGVGKSVLLGMMTRGTTA--D-VIVVGLVGERGR---EVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIA 244 (444)
T ss_pred CCCChhHHHHHhccCCCC--C-EEEEEEEcCChH---HHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999999999874332 2 233333554331 334444443322100000 000000 0123
Q ss_pred HHHHHHhcCceEEEEEeCCCC
Q 040234 67 NMLRVRLRRKKVLVVIDDAAH 87 (377)
Q Consensus 67 ~~l~~~l~~k~~LLVLDdv~~ 87 (377)
+.++. +++++||++||+-.
T Consensus 245 Eyfrd--~G~~VLl~~DslTR 263 (444)
T PRK08972 245 EYFRD--QGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHH--cCCCEEEEEcChHH
Confidence 33443 57899999999854
No 291
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.58 E-value=1.3 Score=39.44 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 14 ~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 14 APGVGKGTFAEILSKKE 30 (229)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999854
No 292
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.55 E-value=0.7 Score=47.10 Aligned_cols=127 Identities=18% Similarity=0.178 Sum_probs=63.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhh-hHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYD-GINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~~k~~L 79 (377)
++|+|||+|++.+++.+...|-. +. +++.. +-.++ -++...-..+... ..+.+++ .+.++=|
T Consensus 358 PPGVGKTSLgkSIA~al~RkfvR---~s-LGGvr----DEAEI--------RGHRRTYIGamPGrIiQ~mkk-a~~~NPv 420 (782)
T COG0466 358 PPGVGKTSLGKSIAKALGRKFVR---IS-LGGVR----DEAEI--------RGHRRTYIGAMPGKIIQGMKK-AGVKNPV 420 (782)
T ss_pred CCCCCchhHHHHHHHHhCCCEEE---Ee-cCccc----cHHHh--------ccccccccccCChHHHHHHHH-hCCcCCe
Confidence 58999999999999977766632 11 33322 22221 1221111111111 1122222 2456778
Q ss_pred EEEeCCCChh---------h-hhHhhCCCCCC---------CCCCeEE-EEecch-h-H-HhhCCCCCeeecCCCChhhh
Q 040234 80 VVIDDAAHPD---------H-LRRLVGEPDWF---------GPGSRII-ITTRNE-H-L-LKLHPVKKVYKLEALTYDEA 136 (377)
Q Consensus 80 LVLDdv~~~~---------~-~~~l~~~l~~~---------~~gs~II-vTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea 136 (377)
++||.++... . ++-|-|..... -.=|.|+ |||-+. . + +..+....++++.+.+++|=
T Consensus 421 ~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EK 500 (782)
T COG0466 421 FLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEK 500 (782)
T ss_pred EEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHH
Confidence 9999986421 1 12111111000 0113333 444332 2 2 22234467899999999998
Q ss_pred HHHHHHHh
Q 040234 137 FRLLCLKA 144 (377)
Q Consensus 137 ~~L~~~~~ 144 (377)
.++-.++.
T Consensus 501 l~IAk~~L 508 (782)
T COG0466 501 LEIAKRHL 508 (782)
T ss_pred HHHHHHhc
Confidence 87766654
No 293
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=89.54 E-value=4.7 Score=37.12 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=33.9
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecc-hhHHhhC-CCCCeeecCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRN-EHLLKLH-PVKKVYKLEAL 131 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~-~~v~~~~-~~~~~~~l~~L 131 (377)
++.-++|+|+++. .+..+.|+..+..-.+++.+|++|.+ ..+...+ +....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 4455889999986 45566666655443556666665555 4444332 33556666654
No 294
>PRK12678 transcription termination factor Rho; Provisional
Probab=89.52 E-value=0.6 Score=46.77 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhh
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREK 33 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~ 33 (377)
+|+|||+|++.+++.+....+ ..+++..+++-
T Consensus 425 p~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER 457 (672)
T PRK12678 425 PKAGKTTILQNIANAITTNNPECHLMVVLVDER 457 (672)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc
Confidence 689999999999996654433 33445545543
No 295
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=89.52 E-value=0.21 Score=41.96 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.8
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
++|+||||||..+.+++....
T Consensus 31 LSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHcC
Confidence 589999999999999776653
No 296
>PRK13947 shikimate kinase; Provisional
Probab=89.47 E-value=0.24 Score=41.61 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
|+|+||||+|+.+++++.-.
T Consensus 9 ~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999976443
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=89.38 E-value=1.4 Score=41.54 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
+.|+||||++..++..++.+
T Consensus 148 ~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47999999999888865543
No 298
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.38 E-value=1.4 Score=39.80 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhc--ccccCHHHHHHHHHHHHhhccc------cCccchhhhHHHHHHHh
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKC--DKEGSVISLQKQLLSDLLKLAD------NNIRNVYDGINMLRVRL 73 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~l~~~l 73 (377)
+|+|||||++.+..-.+-. .+.+++. ..+.. ... ...+...+++...+.... .+.+.-+...-.+.+.|
T Consensus 48 SG~GKSTlgr~i~~L~~pt-~G~i~f~-g~~i~~~~~~-~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPT-SGEILFE-GKDITKLSKE-ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred CCCCHHHHHHHHHcCcCCC-CceEEEc-Ccchhhcchh-HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH
Confidence 7999999999999843322 2334433 11100 000 233444555555432211 11112222233456777
Q ss_pred cCceEEEEEeCCCCh------hhhhHhhCCCCCCCCCCeEEEEecchhHHhhCC
Q 040234 74 RRKKVLVVIDDAAHP------DHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHP 121 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~------~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~ 121 (377)
.-++-|+|.|..-+. .+.-.++..+.. ..|-..|..|.+-.+++.+.
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 889999999996542 222223222221 23667888888887777654
No 299
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=89.22 E-value=0.75 Score=41.29 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=33.7
Q ss_pred HHHHHHHhcCceEEEEEeCC----CC--hhhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 66 INMLRVRLRRKKVLVVIDDA----AH--PDHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 66 ~~~l~~~l~~k~~LLVLDdv----~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
.-.+-+.|.+++=||+||.- +. ...+-.++..+.. .|..||++|.+-....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhH
Confidence 34566778899999999984 22 2234445444443 3888999999865443
No 300
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=89.18 E-value=0.52 Score=43.23 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHHchhccccccceE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSF 26 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w 26 (377)
+|+|||||...+.+.++......+.
T Consensus 113 pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 113 PGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred CCCCHHHHHHHHHHHhccCCCEEEE
Confidence 6999999999999987766544444
No 301
>PRK05922 type III secretion system ATPase; Validated
Probab=89.18 E-value=0.69 Score=45.00 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||.+.++...
T Consensus 166 nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 166 PGSGKSSLLSTIAKGS 181 (434)
T ss_pred CCCChHHHHHHHhccC
Confidence 5999999999998754
No 302
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.16 E-value=4.7 Score=36.64 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=58.3
Q ss_pred ceE-EEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecc--hhHHhhCCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 76 KKV-LVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRN--EHLLKLHPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 76 k~~-LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~--~~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+.| ++||-.++. .+.-..|+.....-.+.+|+|+...+ +-+...-+..-.+.+...+++|....+....-+..-.
T Consensus 126 r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred cceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 344 666666665 23333343332222456777764332 1112211234557888999999999998877443333
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
.| .+.+.+|+++++| -+--|+.++-+
T Consensus 206 lp--~~~l~rIa~kS~~-nLRrAllmlE~ 231 (351)
T KOG2035|consen 206 LP--KELLKRIAEKSNR-NLRRALLMLEA 231 (351)
T ss_pred Cc--HHHHHHHHHHhcc-cHHHHHHHHHH
Confidence 33 6789999999988 24555544433
No 303
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.16 E-value=0.26 Score=41.33 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+++++.
T Consensus 12 ~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 589999999999999763
No 304
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.16 E-value=0.48 Score=45.30 Aligned_cols=85 Identities=22% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEe-cchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLA-DVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
.|+||||++..+.+.+.+..+ ..+... +..+..-. ....+.. ..+ .....+.....+.++..|+..+=.
T Consensus 158 TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--~~~~~~~--~~q-----~evg~~~~~~~~~l~~aLR~~PD~ 228 (372)
T TIGR02525 158 TGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--SPDDLLP--PAQ-----SQIGRDVDSFANGIRLALRRAPKI 228 (372)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--CCceeec--ccc-----cccCCCccCHHHHHHHhhccCCCE
Confidence 599999999999886654333 333322 11110000 0000000 000 000112335667888899999999
Q ss_pred EEEeCCCChhhhhHhh
Q 040234 80 VVIDDAAHPDHLRRLV 95 (377)
Q Consensus 80 LVLDdv~~~~~~~~l~ 95 (377)
|+++.+.+.+.+...+
T Consensus 229 I~vGEiRd~et~~~al 244 (372)
T TIGR02525 229 IGVGEIRDLETFQAAV 244 (372)
T ss_pred EeeCCCCCHHHHHHHH
Confidence 9999999988776543
No 305
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=89.11 E-value=0.31 Score=41.70 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 8 GG~GKTt~a~~la~~la~~ 26 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARK 26 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHhccccc
Confidence 8999999999999966553
No 306
>CHL00206 ycf2 Ycf2; Provisional
Probab=88.99 E-value=3.3 Score=47.29 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=35.9
Q ss_pred cCceEEEEEeCCCChh-------hhhHhhCCCCCC-----CCCCeEEEEecchhHHhhC-----CCCCeeecCCCChhhh
Q 040234 74 RRKKVLVVIDDAAHPD-------HLRRLVGEPDWF-----GPGSRIIITTRNEHLLKLH-----PVKKVYKLEALTYDEA 136 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~~-------~~~~l~~~l~~~-----~~gs~IIvTTR~~~v~~~~-----~~~~~~~l~~L~~~ea 136 (377)
+..+++|-+|+++... .+..|+..+... ..+--||.+|-.+.+.+.. .-.+.+.++.++..+-
T Consensus 1730 k~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R 1809 (2281)
T CHL00206 1730 AMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQ 1809 (2281)
T ss_pred HCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhH
Confidence 3468999999987632 133443333211 1233455556544432221 2356778887776555
Q ss_pred HHHHH
Q 040234 137 FRLLC 141 (377)
Q Consensus 137 ~~L~~ 141 (377)
.+.|.
T Consensus 1810 ~kiL~ 1814 (2281)
T CHL00206 1810 RKHFF 1814 (2281)
T ss_pred HHHHH
Confidence 55443
No 307
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=88.79 E-value=1.4 Score=43.42 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=39.7
Q ss_pred CCCcHHHHHHH-HHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc-----cCccc----------hhhh
Q 040234 2 GGLGKTTLARV-VYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-----NNIRN----------VYDG 65 (377)
Q Consensus 2 gGiGKTtLA~~-v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~----------~~~~ 65 (377)
.|+|||+||.. +.++ + .-+..+.+..+++..+ .+.++...+...=.-... ....+ .-..
T Consensus 150 ~g~GKt~Lal~~I~~q-~-~~dv~cV~~~IGer~r---ev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~ai 224 (485)
T CHL00059 150 RQTGKTAVATDTILNQ-K-GQNVICVYVAIGQKAS---SVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAAL 224 (485)
T ss_pred CCCCHHHHHHHHHHhc-c-cCCeEEEEEEecCCch---HHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhH
Confidence 69999999754 5543 2 2244434444665432 444454444432100000 00000 0112
Q ss_pred HHHHHHHhcCceEEEEEeCCCC
Q 040234 66 INMLRVRLRRKKVLVVIDDAAH 87 (377)
Q Consensus 66 ~~~l~~~l~~k~~LLVLDdv~~ 87 (377)
++.++. ++++.|||+||+-.
T Consensus 225 AEyfr~--~G~~VLlv~DdlTr 244 (485)
T CHL00059 225 AEYFMY--RGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHH--cCCCEEEEEcChhH
Confidence 334443 57899999999854
No 308
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.77 E-value=0.44 Score=44.18 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=47.3
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|+||||+++.+.+.+....+ .++... - +..++...--..+.- . .........+.++..|+..+=.+
T Consensus 141 tGSGKTTll~al~~~i~~~~~~~ri~ti--E-------d~~El~~~~~~~v~~--~-~~~~~~~~~~~l~~aLR~~pD~i 208 (299)
T TIGR02782 141 TGSGKTTLANALLAEIAKNDPTDRVVII--E-------DTRELQCAAPNVVQL--R-TSDDAISMTRLLKATLRLRPDRI 208 (299)
T ss_pred CCCCHHHHHHHHHHHhhccCCCceEEEE--C-------CchhhcCCCCCEEEE--E-ecCCCCCHHHHHHHHhcCCCCEE
Confidence 699999999999987765332 233222 1 111111000000000 0 00111256678888898888889
Q ss_pred EEeCCCChhhhhHhhC
Q 040234 81 VIDDAAHPDHLRRLVG 96 (377)
Q Consensus 81 VLDdv~~~~~~~~l~~ 96 (377)
|+..+.+.+.+..+..
T Consensus 209 ivGEiR~~ea~~~l~a 224 (299)
T TIGR02782 209 IVGEVRGGEALDLLKA 224 (299)
T ss_pred EEeccCCHHHHHHHHH
Confidence 9999999887765443
No 309
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=88.75 E-value=3.8 Score=38.34 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
.+|+|||+||+.++.++...|
T Consensus 72 ~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 72 YHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCChHHHHHHHHHHHHCCCe
Confidence 379999999999999776443
No 310
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=88.65 E-value=1.8 Score=37.80 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++.+.
T Consensus 7 ~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998744
No 311
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=88.62 E-value=1.2 Score=35.00 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.||+|||+++..+++...++
T Consensus 7 kgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 38999999999999866543
No 312
>PHA02518 ParA-like protein; Provisional
Probab=88.60 E-value=0.35 Score=42.05 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 10 GGvGKTT~a~~la~~la~~ 28 (211)
T PHA02518 10 GGAGKTTVATNLASWLHAD 28 (211)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 8999999999998865543
No 313
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.59 E-value=0.84 Score=42.54 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||||++.+...+..... .+.+.+..+......+... +...........-...+.+...|+..+=.|+
T Consensus 153 tGsGKTTll~al~~~~~~~~~-iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 153 TGSGKTTFLKSLVDEIPKDER-IITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCCCHHHHHHHHHccCCcccc-EEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 599999999999986544322 2233322221100000000 0000000011122345677778888888899
Q ss_pred EeCCCChhhhhHhhCCCCCCCCCCe-EEEEecchh
Q 040234 82 IDDAAHPDHLRRLVGEPDWFGPGSR-IIITTRNEH 115 (377)
Q Consensus 82 LDdv~~~~~~~~l~~~l~~~~~gs~-IIvTTR~~~ 115 (377)
+|.+.+.+.+..+... ..|.. ++.|+....
T Consensus 224 ~gE~r~~e~~~~l~a~----~~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 224 LGELRGDEAFDFIRAV----NTGHPGSITTLHAGS 254 (308)
T ss_pred EeccCCHHHHHHHHHH----hcCCCeEEEEEeCCC
Confidence 9999997766544433 22332 466665443
No 314
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=88.56 E-value=0.31 Score=42.08 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||||+.+...+..
T Consensus 7 ~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp STTSSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhCc
Confidence 3799999999999997654
No 315
>PTZ00301 uridine kinase; Provisional
Probab=88.52 E-value=0.26 Score=43.22 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.7
Q ss_pred CCCcHHHHHHHHHchhcccc
Q 040234 2 GGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f 21 (377)
+|+||||||+.+.+++..++
T Consensus 12 SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 12 SGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CcCCHHHHHHHHHHHHHhhc
Confidence 79999999999998775544
No 316
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=88.49 E-value=0.76 Score=43.00 Aligned_cols=14 Identities=29% Similarity=0.159 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||+|+..++.
T Consensus 105 ~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 105 FRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCcCHHHHHHHH
Confidence 69999999998886
No 317
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=88.46 E-value=1 Score=44.02 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||++.++...
T Consensus 174 SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 174 SGVGKSTLLAMLARAD 189 (450)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999888743
No 318
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.43 E-value=2.5 Score=41.02 Aligned_cols=17 Identities=29% Similarity=0.141 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+||||++.+++...
T Consensus 231 ptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999743
No 319
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=88.43 E-value=1.1 Score=37.55 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++....+
T Consensus 9 gG~GKTt~a~~LA~~la~ 26 (169)
T cd02037 9 GGVGKSTVAVNLALALAK 26 (169)
T ss_pred CcCChhHHHHHHHHHHHH
Confidence 899999999999985544
No 320
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.38 E-value=1.5 Score=41.93 Aligned_cols=80 Identities=20% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
..|+||||++.+++.+...++. ..+.+... +.++ . ...+-++...+.++.. .....+..+....+ ..+.++. +
T Consensus 145 ptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R-~-ga~EqL~~~a~~~gv~-~~~~~~~~~l~~~l-~~l~~~D-l 218 (374)
T PRK14722 145 PTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYR-I-GGHEQLRIFGKILGVP-VHAVKDGGDLQLAL-AELRNKH-M 218 (374)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-cccc-c-cHHHHHHHHHHHcCCc-eEecCCcccHHHHH-HHhcCCC-E
Confidence 3799999999999986543332 23333312 1111 1 2233344444443322 11222223333333 3345554 5
Q ss_pred EEEeCCC
Q 040234 80 VVIDDAA 86 (377)
Q Consensus 80 LVLDdv~ 86 (377)
+++|.+-
T Consensus 219 VLIDTaG 225 (374)
T PRK14722 219 VLIDTIG 225 (374)
T ss_pred EEEcCCC
Confidence 6689874
No 321
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=88.37 E-value=1.9 Score=36.54 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHhcCc--eEEEEEeCCCC---hhhhhHhhCCCCCC-CCCCeEEEEecchhHHhhCCCCCeeec
Q 040234 69 LRVRLRRK--KVLVVIDDAAH---PDHLRRLVGEPDWF-GPGSRIIITTRNEHLLKLHPVKKVYKL 128 (377)
Q Consensus 69 l~~~l~~k--~~LLVLDdv~~---~~~~~~l~~~l~~~-~~gs~IIvTTR~~~v~~~~~~~~~~~l 128 (377)
+-+.+..+ +=+++||+.-. ....+.+...+... ..|..||++|.+...... ....+.+
T Consensus 98 laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 34445556 67888999743 22222222211111 246678888888766542 3344444
No 322
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=88.36 E-value=0.47 Score=41.77 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhh
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREK 33 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~ 33 (377)
||+||||+|..++.++..+-...+.+.|.-++
T Consensus 9 GG~GKTtiaalll~~l~~~~~~~VLvVDaDpd 40 (255)
T COG3640 9 GGVGKTTIAALLLKRLLSKGGYNVLVVDADPD 40 (255)
T ss_pred CCccHHHHHHHHHHHHHhcCCceEEEEeCCCC
Confidence 89999999999777554443233444444433
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=88.36 E-value=0.33 Score=34.12 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+||||+|+.+.++.
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999999875
No 324
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.34 E-value=2.5 Score=35.05 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.+.+..
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999999865
No 325
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.33 E-value=0.59 Score=40.00 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=24.5
Q ss_pred hhHHHHHHHhcCceEEEEEeCCCChhhhhHhhC
Q 040234 64 DGINMLRVRLRRKKVLVVIDDAAHPDHLRRLVG 96 (377)
Q Consensus 64 ~~~~~l~~~l~~k~~LLVLDdv~~~~~~~~l~~ 96 (377)
...+.++..++..+=.++++.+.+.+.+..+..
T Consensus 88 ~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 88 TMADLLRSALRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred CHHHHHHHHhccCCCEEEEEccCcHHHHHHHHH
Confidence 455667777777788899999999877665543
No 326
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.16 E-value=0.91 Score=45.22 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=20.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+|||||+.+++.....+-..++++.
T Consensus 271 ~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3799999999999986544434445543
No 327
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.16 E-value=6.2 Score=40.91 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=40.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|.|||-||++|+.+..-.| +. |.+. +++....++ +++...+.+.+.=..++++|
T Consensus 713 PPGTGKTLlAKAVATEcsL~F-----lS-VKGP------------ELLNMYVGq------SE~NVR~VFerAR~A~PCVI 768 (953)
T KOG0736|consen 713 PPGTGKTLLAKAVATECSLNF-----LS-VKGP------------ELLNMYVGQ------SEENVREVFERARSAAPCVI 768 (953)
T ss_pred CCCCchHHHHHHHHhhceeeE-----Ee-ecCH------------HHHHHHhcc------hHHHHHHHHHHhhccCCeEE
Confidence 479999999999998554333 22 3332 223333332 34444555555556689999
Q ss_pred EEeCCCC
Q 040234 81 VIDDAAH 87 (377)
Q Consensus 81 VLDdv~~ 87 (377)
.+|.+++
T Consensus 769 FFDELDS 775 (953)
T KOG0736|consen 769 FFDELDS 775 (953)
T ss_pred Eeccccc
Confidence 9999876
No 328
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.14 E-value=1.8 Score=37.19 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=25.3
Q ss_pred HHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEH 115 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~ 115 (377)
+-+.+..++=++++|+.-. .. .+..++..+. ..+..||++|.+..
T Consensus 119 la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiiivtH~~~ 169 (192)
T cd03232 119 IGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA--DSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHH--HcCCEEEEEEcCCh
Confidence 4455566777899999643 22 2222222221 23567888887754
No 329
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=88.03 E-value=0.3 Score=37.19 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
||+||||+|..++....++ ...+++.
T Consensus 9 gG~Gkst~~~~la~~~~~~-~~~vl~~ 34 (104)
T cd02042 9 GGVGKTTTAVNLAAALARR-GKRVLLI 34 (104)
T ss_pred CCcCHHHHHHHHHHHHHhC-CCcEEEE
Confidence 8999999999999865542 2334444
No 330
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=88.02 E-value=5.1 Score=40.46 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||++|+.+.+..
T Consensus 228 ~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 228 SGTGKELIAKAIHYLS 243 (534)
T ss_pred CCccHHHHHHHHHHhC
Confidence 6999999999999843
No 331
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=87.84 E-value=2.3 Score=42.58 Aligned_cols=53 Identities=6% Similarity=-0.089 Sum_probs=31.5
Q ss_pred CCCeeecCCCChhhhHHHHHHHhcCC------CCCchhHHHHHHHHHHHhCCCCchhhHH
Q 040234 122 VKKVYKLEALTYDEAFRLLCLKAFDT------HKPLEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 122 ~~~~~~l~~L~~~ea~~L~~~~~~~~------~~~~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
....+...+.++.--.+.|.+.+-.. ....+...++.+.|++.++| ++--||.
T Consensus 204 ~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G-DIRsAIn 262 (519)
T PF03215_consen 204 GITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG-DIRSAIN 262 (519)
T ss_pred CceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc-hHHHHHH
Confidence 45667788888877666666554322 11223334567788888855 2555553
No 332
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=87.84 E-value=1.9 Score=42.63 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=39.3
Q ss_pred CCCcHHHHH-HHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc-----cCccc----------hhhh
Q 040234 2 GGLGKTTLA-RVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-----NNIRN----------VYDG 65 (377)
Q Consensus 2 gGiGKTtLA-~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~----------~~~~ 65 (377)
.|+|||+|| ..+.++.. -+..+-+..+++..+ .+.++.+.+...=..... ....+ .-..
T Consensus 171 ~g~GKT~Lal~~I~~q~~--~dv~~V~~~IGeR~r---ev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~ai 245 (497)
T TIGR03324 171 RQTGKTAIAIDTILNQKG--RNVLCIYCAIGQRAS---AVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSI 245 (497)
T ss_pred CCCCHHHHHHHHHHHhcC--CCcEEEEEEeccCcH---HHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 499999997 46776432 233233333666532 444454444432100000 00000 1112
Q ss_pred HHHHHHHhcCceEEEEEeCCCC
Q 040234 66 INMLRVRLRRKKVLVVIDDAAH 87 (377)
Q Consensus 66 ~~~l~~~l~~k~~LLVLDdv~~ 87 (377)
++.++. ++++.|||+||+-.
T Consensus 246 AEyfrd--~G~~VLlv~DdlTr 265 (497)
T TIGR03324 246 GEHFME--QGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHh--CCCCEEEEEcChhH
Confidence 333332 57899999999854
No 333
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=87.79 E-value=0.43 Score=40.18 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
-||+||||+|..++.....+
T Consensus 8 kgG~GKtt~a~~la~~l~~~ 27 (179)
T cd02036 8 KGGVGKTTTTANLGTALAQL 27 (179)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 38999999999999866554
No 334
>PTZ00035 Rad51 protein; Provisional
Probab=87.70 E-value=1 Score=42.60 Aligned_cols=14 Identities=29% Similarity=0.199 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||+|+..++-
T Consensus 127 ~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 127 FRTGKTQLCHTLCV 140 (337)
T ss_pred CCCchhHHHHHHHH
Confidence 69999999998875
No 335
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=87.58 E-value=2.2 Score=43.05 Aligned_cols=23 Identities=13% Similarity=-0.161 Sum_probs=18.6
Q ss_pred CCeeecCCCChhhhHHHHHHHhc
Q 040234 123 KKVYKLEALTYDEAFRLLCLKAF 145 (377)
Q Consensus 123 ~~~~~l~~L~~~ea~~L~~~~~~ 145 (377)
...+.+++|+.+|-.+++...+.
T Consensus 255 ~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 255 CVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred hheeeCCCCCHHHHHHHHHHHHH
Confidence 35678899999999888888764
No 336
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=87.55 E-value=0.94 Score=38.43 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=19.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+|||+||.+++......=..++|+.
T Consensus 7 ~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 7 GPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3799999999998875433334455654
No 337
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=87.51 E-value=0.83 Score=45.83 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHchhcccc-ccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEF-DGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f-~~~~w~~ 28 (377)
+|+|||+||.+++.....++ ..++|+.
T Consensus 40 pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 40 AGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 79999999999887544443 3455654
No 338
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.47 E-value=1.1 Score=37.08 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|.|||||++.++..+.. ..+.+++... .... . .... ....+.-. .+.+.-+...-.+.+.+...+=+++
T Consensus 34 nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~~-~-~~~~----~~~~i~~~--~qlS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 34 NGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIAK-L-PLEE----LRRRIGYV--PQLSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CCCCHHHHHHHHhCCCCC-CccEEEECCE-Eccc-C-CHHH----HHhceEEE--eeCCHHHHHHHHHHHHHhcCCCEEE
Confidence 699999999999985532 3455555421 1100 0 0111 11111100 0011112223334555566678999
Q ss_pred EeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 82 IDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 82 LDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
||+... .. .+..+...+. ..+..+|++|.+......
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 999753 22 2222222222 224678888888766554
No 339
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=87.46 E-value=1.8 Score=41.98 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||+..++...+
T Consensus 146 sG~GKTtLl~~I~~~~~ 162 (411)
T TIGR03496 146 SGVGKSTLLGMMARYTE 162 (411)
T ss_pred CCCCHHHHHHHHhcCCC
Confidence 69999999998887443
No 340
>PF13245 AAA_19: Part of AAA domain
Probab=87.42 E-value=1.1 Score=32.18 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHc-hh--ccccccceEEe
Q 040234 1 MGGLGKTTLARVVYD-LI--SHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~-~~--~~~f~~~~w~~ 28 (377)
.+|.|||+++.+... -+ +......+.+.
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~ 48 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVL 48 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 379999965554444 33 22234455554
No 341
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.41 E-value=0.4 Score=40.55 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+..+..
T Consensus 10 ~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 10 GSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 479999999999988643
No 342
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=87.39 E-value=0.52 Score=41.38 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=27.4
Q ss_pred cCceEEEEEeCCCCh---hh----hhHhhCCCCCCC-CCCeEEEEecchhHHhhC
Q 040234 74 RRKKVLVVIDDAAHP---DH----LRRLVGEPDWFG-PGSRIIITTRNEHLLKLH 120 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~---~~----~~~l~~~l~~~~-~gs~IIvTTR~~~v~~~~ 120 (377)
..++-|++||..-.. .+ ...+...+...+ .+..+|+||....++...
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 467899999998541 11 122222222111 235799999988776543
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.27 E-value=1.9 Score=39.36 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
++|+||||++..++...+..
T Consensus 80 ~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhc
Confidence 47999999999999866544
No 344
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.26 E-value=6.1 Score=40.11 Aligned_cols=139 Identities=16% Similarity=0.072 Sum_probs=67.8
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCc-eEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRK-KVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k-~~L 79 (377)
++|.|||-||+.|+++...+ ++.. +..+++ +.+.+. +...+.+.+.+..+.+ +.+
T Consensus 226 ppg~Gkt~l~~aVa~e~~a~----~~~i----------~~peli----~k~~gE------te~~LR~~f~~a~k~~~psi 281 (693)
T KOG0730|consen 226 PPGTGKTFLVRAVANEYGAF----LFLI----------NGPELI----SKFPGE------TESNLRKAFAEALKFQVPSI 281 (693)
T ss_pred CCCCChHHHHHHHHHHhCce----eEec----------ccHHHH----Hhcccc------hHHHHHHHHHHHhccCCCee
Confidence 47999999999999966522 2222 111222 221221 3334455555566666 788
Q ss_pred EEEeCCCCh---------------hhhhHhhCCCCCCCCCCeEEEEecchhH----HhhCCCCCeeecCCCChhhhHHHH
Q 040234 80 VVIDDAAHP---------------DHLRRLVGEPDWFGPGSRIIITTRNEHL----LKLHPVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 80 LVLDdv~~~---------------~~~~~l~~~l~~~~~gs~IIvTTR~~~v----~~~~~~~~~~~l~~L~~~ea~~L~ 140 (377)
+.+|+++.. .++..|...... ..+.-||-|||.+.- .++-.-.+.+.+.--+..+=.+++
T Consensus 282 i~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl 360 (693)
T KOG0730|consen 282 IFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDIL 360 (693)
T ss_pred EeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHH
Confidence 888886542 133344444321 122234445665432 111112344556666655555555
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 141 CLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
+...-.-... .......|+..+.|
T Consensus 361 ~~l~k~~~~~---~~~~l~~iA~~thG 384 (693)
T KOG0730|consen 361 RVLTKKMNLL---SDVDLEDIAVSTHG 384 (693)
T ss_pred HHHHHhcCCc---chhhHHHHHHHccc
Confidence 5444221111 12334456666665
No 345
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=87.14 E-value=0.43 Score=42.88 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhh
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREK 33 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~ 33 (377)
||+||||+|..++.-+...|.....=+||-..
T Consensus 11 GGtGKTTva~~la~~l~~~~~~~l~DcDVe~P 42 (284)
T COG1149 11 GGTGKTTVAANLAVLLGDKYKLVLADCDVEAP 42 (284)
T ss_pred CCCChhhHHHHHHHHhccccceEEEecCCCCC
Confidence 89999999999999888888887777766554
No 346
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=87.13 E-value=1.4 Score=39.81 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHHchhcccc-ccceEEecchhhcccccCHHHHHHHHHHHHhhc
Q 040234 2 GGLGKTTLARVVYDLISHEF-DGSSFLADVREKCDKEGSVISLQKQLLSDLLKL 54 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f-~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 54 (377)
+|+|||++|.+++.....+- ..++|+. .- . +..++...++....+.
T Consensus 28 pg~GKT~~~l~ia~~~a~~~~~~vly~S-lE-m-----~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 28 PGVGKTAFALQIALNAALNGGYPVLYFS-LE-M-----SEEELAARLLARLSGV 74 (259)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSSEEEEEE-SS-S------HHHHHHHHHHHHHTS
T ss_pred ccCCchHHHHHHHHHHHHhcCCeEEEEc-CC-C-----CHHHHHHHHHHHhhcc
Confidence 79999999999998654432 3444444 21 1 5567777777776443
No 347
>PRK06936 type III secretion system ATPase; Provisional
Probab=87.13 E-value=1.9 Score=42.11 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||.+.+++...
T Consensus 171 sG~GKStLl~~Ia~~~~ 187 (439)
T PRK06936 171 AGGGKSTLLASLIRSAE 187 (439)
T ss_pred CCCChHHHHHHHhcCCC
Confidence 69999999999998544
No 348
>PRK06217 hypothetical protein; Validated
Probab=86.99 E-value=0.42 Score=40.80 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||||+++.++.
T Consensus 9 ~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 9 ASGSGTTTLGAALAERL 25 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999999864
No 349
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=86.95 E-value=0.47 Score=43.35 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+.+
T Consensus 11 GGVGKTT~a~nLA~~La~ 28 (275)
T PRK13233 11 GGIGKSTTTQNTAAAMAY 28 (275)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 899999999998886653
No 350
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=86.90 E-value=0.9 Score=42.95 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=12.9
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
.+|+|||+||..++-
T Consensus 131 ~~g~GKT~l~~~l~~ 145 (342)
T PLN03186 131 EFRTGKTQLCHTLCV 145 (342)
T ss_pred CCCCCccHHHHHHHH
Confidence 379999999998885
No 351
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=86.85 E-value=0.78 Score=39.99 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=28.1
Q ss_pred cCceEEEEEeCCCC---hhh----hhHhhCCCCCCCCCCeEEEEecchhHHhhC
Q 040234 74 RRKKVLVVIDDAAH---PDH----LRRLVGEPDWFGPGSRIIITTRNEHLLKLH 120 (377)
Q Consensus 74 ~~k~~LLVLDdv~~---~~~----~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~ 120 (377)
..++-|++||.... ..+ ...+...+. ..+..+|++|....++...
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 35678999999732 211 122222222 2377899999998877654
No 352
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=86.70 E-value=1.9 Score=42.87 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.9
Q ss_pred cCceEEEEEeCCCC
Q 040234 74 RRKKVLVVIDDAAH 87 (377)
Q Consensus 74 ~~k~~LLVLDdv~~ 87 (377)
++++.|||+||+-.
T Consensus 252 ~G~~VLli~DdlTr 265 (502)
T PRK09281 252 NGKDALIVYDDLSK 265 (502)
T ss_pred cCCCEEEEecCchH
Confidence 37899999999865
No 353
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.69 E-value=1.8 Score=41.40 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcccc--CccchhhhH---------HHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN--NIRNVYDGI---------NMLR 70 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~---------~~l~ 70 (377)
+|+|||||.-.+++.-+ ++..+ +.-+++.. + .+.+.+++.+..-+..... ...+.+... -.+-
T Consensus 172 sGVGKStLLgMiar~t~--aDv~V-iaLIGERG-R--EVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IA 245 (441)
T COG1157 172 SGVGKSTLLGMIARNTE--ADVNV-IALIGERG-R--EVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIA 245 (441)
T ss_pred CCCcHHHHHHHHhcccc--CCEEE-EEEeeccc-h--hHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 69999999999998333 33222 22133322 1 4445544444332221111 011111111 1233
Q ss_pred HHh--cCceEEEEEeCCC
Q 040234 71 VRL--RRKKVLVVIDDAA 86 (377)
Q Consensus 71 ~~l--~~k~~LLVLDdv~ 86 (377)
+++ +++++||++|.+-
T Consensus 246 EyFRDqG~~VLL~mDSlT 263 (441)
T COG1157 246 EYFRDQGKRVLLIMDSLT 263 (441)
T ss_pred HHHHhCCCeEEEEeecHH
Confidence 344 4689999999974
No 354
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=86.66 E-value=0.43 Score=39.09 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
++|+||||+|+.+..+
T Consensus 7 ~~GsGKST~a~~l~~~ 22 (150)
T cd02021 7 VSGSGKSTVGKALAER 22 (150)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 4799999999999886
No 355
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.64 E-value=1.2 Score=40.63 Aligned_cols=94 Identities=20% Similarity=0.259 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHchhccccccceEE-ecchhhcccccCHHHHHHHHHHHHhhccccCc-cchhhhHHHHHHHhcCceEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFL-ADVREKCDKEGSVISLQKQLLSDLLKLADNNI-RNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~-~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~l~~~l~~k~~L 79 (377)
.|+||||++..+...+... ...+.. .+..+.. + ... ....... .......+.++..|+..+=.
T Consensus 136 tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~-----l--------~~~-~~~~~~~~~~~~~~~~~l~~~LR~~pD~ 200 (270)
T PF00437_consen 136 TGSGKTTLLNALLEEIPPE-DERIVTIEDPPELR-----L--------PGP-NQIQIQTRRDEISYEDLLKSALRQDPDV 200 (270)
T ss_dssp TTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S---------------SCS-SEEEEEEETTTBSHHHHHHHHTTS--SE
T ss_pred CccccchHHHHHhhhcccc-ccceEEecccccee-----e--------ccc-ceEEEEeecCcccHHHHHHHHhcCCCCc
Confidence 6999999999999866655 333332 2111110 0 000 0000011 23445677888889988889
Q ss_pred EEEeCCCChhhhhHhhCCCCCCCCCCeE-EEEecch
Q 040234 80 VVIDDAAHPDHLRRLVGEPDWFGPGSRI-IITTRNE 114 (377)
Q Consensus 80 LVLDdv~~~~~~~~l~~~l~~~~~gs~I-IvTTR~~ 114 (377)
++++.+.+.+.+..+... ..|..+ +-|....
T Consensus 201 iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 201 IIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred ccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 999999998877765443 456666 5555543
No 356
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=86.62 E-value=1.9 Score=42.85 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.9
Q ss_pred cCceEEEEEeCCCC
Q 040234 74 RRKKVLVVIDDAAH 87 (377)
Q Consensus 74 ~~k~~LLVLDdv~~ 87 (377)
++++.|||+||+-.
T Consensus 251 ~G~~VLlv~Ddltr 264 (501)
T TIGR00962 251 NGKHALIIYDDLSK 264 (501)
T ss_pred cCCCEEEEecchHH
Confidence 47899999999854
No 357
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.60 E-value=5.1 Score=34.98 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHhhC
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLKLH 120 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~ 120 (377)
+.+.+..++=+++||+.-+ .+ .+..++..+. ..+..||++|.+.......
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~ 203 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL--RGGGAALVTTHGAYAAPPV 203 (214)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecChhhhhhh
Confidence 3344455667999999743 22 2333332222 2356788888887655443
No 358
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=86.54 E-value=1.5 Score=41.03 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||.+.++....
T Consensus 78 sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 78 SGVGKSTLLGMIARGTT 94 (326)
T ss_pred CCCChHHHHHHHhCCCC
Confidence 69999999999998544
No 359
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=86.49 E-value=0.75 Score=41.11 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
||+|||||+..++..+...=..++-|.
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 899999999999986555433444343
No 360
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=86.38 E-value=0.44 Score=37.85 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=13.3
Q ss_pred CCcHHHHHHHHHchh
Q 040234 3 GLGKTTLARVVYDLI 17 (377)
Q Consensus 3 GiGKTtLA~~v~~~~ 17 (377)
|+|||||++.+++.+
T Consensus 25 GaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 25 GAGKTTFVRGLARAL 39 (123)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 899999999999843
No 361
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.35 E-value=1.1 Score=40.66 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+|||++|.+++.+...+...++|+.
T Consensus 32 pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 32 PGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 799999999999998777777777776
No 362
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=86.34 E-value=0.68 Score=35.63 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecc
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADV 30 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~ 30 (377)
||+||||+|..++......+...+++.+.
T Consensus 9 gg~gkt~~~~~la~~~~~~~~~~~~l~d~ 37 (106)
T cd03111 9 GGVGATTLAANLAVALAKEAGRRVLLVDL 37 (106)
T ss_pred CCCcHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 89999999999998776653444444433
No 363
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=86.23 E-value=0.47 Score=39.43 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=17.0
Q ss_pred CCCcHHHHHHHHHchhcccc
Q 040234 2 GGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f 21 (377)
.|+||||+++.++.++.-.|
T Consensus 1 ~GsGKStvg~~lA~~L~~~f 20 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPF 20 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEE
T ss_pred CCCcHHHHHHHHHHHhCCCc
Confidence 48999999999999776554
No 364
>PRK06696 uridine kinase; Validated
Probab=86.14 E-value=0.43 Score=42.20 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||||+.+++.+..
T Consensus 30 ~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 30 ITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3799999999999987654
No 365
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=86.10 E-value=2.1 Score=41.82 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.+++...
T Consensus 167 sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 167 SGVGKSVLLSMLARNAD 183 (442)
T ss_pred CCCCHHHHHHHHHhccC
Confidence 69999999999997543
No 366
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=86.07 E-value=2.2 Score=36.31 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+...+.
T Consensus 26 ~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 26 LSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 369999999999998654
No 367
>PRK08149 ATP synthase SpaL; Validated
Probab=86.04 E-value=1.1 Score=43.45 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc-----ccCccc----------hhhhH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA-----DNNIRN----------VYDGI 66 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~----------~~~~~ 66 (377)
.|+|||||+..++..... +..+ +..++... ..+..+....+....... .....+ .-..+
T Consensus 160 sG~GKTTLl~~i~~~~~~--dv~v-~g~Ig~rg---~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiA 233 (428)
T PRK08149 160 AGCGKTSLMNMLIEHSEA--DVFV-IGLIGERG---REVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVA 233 (428)
T ss_pred CCCChhHHHHHHhcCCCC--CeEE-EEEEeeCC---ccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHH
Confidence 699999999999873322 1111 22232221 155555555554321110 000010 11123
Q ss_pred HHHHHHhcCceEEEEEeCCCC
Q 040234 67 NMLRVRLRRKKVLVVIDDAAH 87 (377)
Q Consensus 67 ~~l~~~l~~k~~LLVLDdv~~ 87 (377)
+.++. ++++.||++||+-.
T Consensus 234 E~fr~--~G~~Vll~~DslTr 252 (428)
T PRK08149 234 EYFRD--QGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHH--cCCCEEEEccchHH
Confidence 33443 58899999999854
No 368
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=86.03 E-value=0.6 Score=41.58 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecc
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADV 30 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~ 30 (377)
||+||||+|..++...... ...+.+.|.
T Consensus 11 GGvGKTT~a~nLA~~la~~-G~~VlliD~ 38 (231)
T PRK13849 11 GGAGKTTALMGLCAALASD-GKRVALFEA 38 (231)
T ss_pred CCccHHHHHHHHHHHHHhC-CCcEEEEeC
Confidence 8999999999999855443 223444444
No 369
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.03 E-value=2.5 Score=41.29 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+||||++..++....
T Consensus 229 ptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999887554
No 370
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.02 E-value=0.53 Score=38.58 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++..+
T Consensus 7 ~~GsGKstla~~la~~l 23 (154)
T cd00464 7 MMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999865
No 371
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=86.01 E-value=2 Score=40.79 Aligned_cols=28 Identities=32% Similarity=0.283 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHHchh--ccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLI--SHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~--~~~f~~~~w~~ 28 (377)
.+|.|||.||..++.++ .......++++
T Consensus 9 ~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 9 GAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred cCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 37999999999999987 55555556555
No 372
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=86.00 E-value=8.8 Score=36.11 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
.|+||+++|+.+.+.
T Consensus 31 ~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 31 RGTGKELIAARLHYL 45 (329)
T ss_pred CCChHHHHHHHHHHh
Confidence 699999999999873
No 373
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=85.97 E-value=2.6 Score=37.20 Aligned_cols=17 Identities=47% Similarity=0.604 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+||||||+.+...+.
T Consensus 8 sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 8 VAVGKSTTARVLQALLS 24 (220)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 69999999999998664
No 374
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=85.94 E-value=2.3 Score=40.10 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 47 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i 47 (377)
.|+|||+|++++++.... +..+++. +++... .+.+++.++
T Consensus 166 ~G~GKT~L~~~Iak~~~~--dvvVyv~-iGERg~---Ev~e~l~ef 205 (369)
T cd01134 166 FGCGKTVIQQSLSKYSNS--DIVIYVG-CGERGN---EMTEVLEEF 205 (369)
T ss_pred CCCChHHHHHHHHhCCCC--CEEEEEE-eCCChH---HHHHHHHHH
Confidence 699999999999985322 2344433 555321 445555554
No 375
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.90 E-value=4.6 Score=34.93 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.++...+
T Consensus 42 nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 42 PGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCCHHHHHHHhcccCC
Confidence 69999999999998543
No 376
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=85.87 E-value=1.3 Score=45.32 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
++|+|||++|+.+++.+...|
T Consensus 446 PPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 446 PPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred CCCCCcccHHHHHHHHhCCce
Confidence 589999999999999665444
No 377
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=85.86 E-value=0.48 Score=41.04 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
|=|+||||||+.++++++
T Consensus 12 ~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 12 MIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccccCHHHHHHHHHHHhC
Confidence 348999999999998765
No 378
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.81 E-value=3.3 Score=39.85 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+||||.+..++....
T Consensus 183 tGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999988554
No 379
>PTZ00185 ATPase alpha subunit; Provisional
Probab=85.80 E-value=3.3 Score=41.16 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=12.0
Q ss_pred cCceEEEEEeCCCC
Q 040234 74 RRKKVLVVIDDAAH 87 (377)
Q Consensus 74 ~~k~~LLVLDdv~~ 87 (377)
+++..|+|+||+-.
T Consensus 287 ~GkdVLiv~DDLTr 300 (574)
T PTZ00185 287 RGRHCLCVYDDLSK 300 (574)
T ss_pred cCCCEEEEEcCchH
Confidence 57899999999854
No 380
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=85.78 E-value=4.2 Score=35.09 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=28.7
Q ss_pred HHHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
.+.+.+..++=+++||+.-. .. .+..++..+. ..+..||++|.+.....
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~--~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR--EEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHH
Confidence 34555667778999999743 22 2222222221 23567888888876655
No 381
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=85.77 E-value=2.1 Score=42.48 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=12.0
Q ss_pred cCceEEEEEeCCCC
Q 040234 74 RRKKVLVVIDDAAH 87 (377)
Q Consensus 74 ~~k~~LLVLDdv~~ 87 (377)
++++.|||+||+-.
T Consensus 252 ~G~~VLlv~DdlTr 265 (502)
T PRK13343 252 QGQDALIVYDDLSK 265 (502)
T ss_pred CCCCEEEEecchHH
Confidence 57899999999854
No 382
>PRK14526 adenylate kinase; Provisional
Probab=85.74 E-value=1.8 Score=37.95 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++...
T Consensus 8 ~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 8 PPGSGKGTIAKILSNEL 24 (211)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998744
No 383
>PRK13975 thymidylate kinase; Provisional
Probab=85.73 E-value=0.51 Score=40.56 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+||||+|+.+++++..
T Consensus 10 ~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 4799999999999997754
No 384
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=85.68 E-value=3.9 Score=39.92 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=25.1
Q ss_pred cCceEEEEEeCCCC-hhhhhH---hhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 74 RRKKVLVVIDDAAH-PDHLRR---LVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 74 ~~k~~LLVLDdv~~-~~~~~~---l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
++++.||++|++-. .+..+. .....|. .|--..+.|..+.+..+
T Consensus 244 ~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ER 291 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLER 291 (432)
T ss_pred cCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHH
Confidence 47899999999865 222333 2333332 25555665555555444
No 385
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=85.59 E-value=0.91 Score=38.87 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecc
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADV 30 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~ 30 (377)
.|+|||+|..+.++.++++|+..+.-.|+
T Consensus 22 ~GSGKTaLie~~~~~L~~~~~~aVI~~Di 50 (202)
T COG0378 22 PGSGKTALIEKTLRALKDEYKIAVITGDI 50 (202)
T ss_pred CCcCHHHHHHHHHHHHHhhCCeEEEecee
Confidence 69999999999999999999877655444
No 386
>PRK06547 hypothetical protein; Provisional
Probab=85.57 E-value=0.52 Score=39.90 Aligned_cols=17 Identities=41% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+||||||..+++..
T Consensus 23 ~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 23 RSGSGKTTLAGALAART 39 (172)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999853
No 387
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=85.57 E-value=0.5 Score=42.87 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecc
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADV 30 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~ 30 (377)
||+||||+|..++..+.+.- ++.+.|.
T Consensus 11 GGvGKTT~a~nLA~~La~~G--rVLliD~ 37 (264)
T PRK13231 11 GGIGKSTTVSNMAAAYSNDH--RVLVIGC 37 (264)
T ss_pred CCCcHHHHHHHHhcccCCCC--EEEEEeE
Confidence 89999999999999665542 4444434
No 388
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.55 E-value=13 Score=33.26 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=59.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh----cCc
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL----RRK 76 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l----~~k 76 (377)
.+|.|||-||+.+++.. . +|+..++.. ++.... .+. ....+|+.+ ..-
T Consensus 189 ppgtGktLlaraVahht-----~-c~firvsgs--------elvqk~----ige----------gsrmvrelfvmareha 240 (404)
T KOG0728|consen 189 PPGTGKTLLARAVAHHT-----D-CTFIRVSGS--------ELVQKY----IGE----------GSRMVRELFVMAREHA 240 (404)
T ss_pred CCCCchhHHHHHHHhhc-----c-eEEEEechH--------HHHHHH----hhh----------hHHHHHHHHHHHHhcC
Confidence 47999999999999732 2 333335443 111111 111 123333332 234
Q ss_pred eEEEEEeCCCCh------------hh----hhHhhCCCCCC--CCCCeEEEEecchhHHhh-----CCCCCeeecCCCCh
Q 040234 77 KVLVVIDDAAHP------------DH----LRRLVGEPDWF--GPGSRIIITTRNEHLLKL-----HPVKKVYKLEALTY 133 (377)
Q Consensus 77 ~~LLVLDdv~~~------------~~----~~~l~~~l~~~--~~gs~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~ 133 (377)
+-++.+|.+++. .+ .-.++..+... .+.-+||..|..-++... -...+.++.++-++
T Consensus 241 psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 241 PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred CceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCH
Confidence 678888887642 11 11233333221 345577765544333221 13356778888777
Q ss_pred hhhHHHHHHHh
Q 040234 134 DEAFRLLCLKA 144 (377)
Q Consensus 134 ~ea~~L~~~~~ 144 (377)
+.-.+++.-+.
T Consensus 321 ~ar~~ilkihs 331 (404)
T KOG0728|consen 321 EARLDILKIHS 331 (404)
T ss_pred HHHHHHHHHhh
Confidence 77777776544
No 389
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=85.54 E-value=0.65 Score=42.23 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
||+||||+|..++..+.
T Consensus 9 GGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFA 25 (268)
T ss_pred CcCcHHHHHHHHHHHHH
Confidence 89999999988887544
No 390
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.54 E-value=0.48 Score=43.33 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+|||++++...++.
T Consensus 41 ~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 41 PSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp STTSSHHHHHHHHHHCS
T ss_pred CCCCchhHHHHhhhccC
Confidence 37999999999988744
No 391
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=85.47 E-value=0.48 Score=39.39 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
-|+||||+|..+.+-.
T Consensus 8 iGCGKTTva~aL~~LF 23 (168)
T PF08303_consen 8 IGCGKTTVALALSNLF 23 (168)
T ss_pred CCcCHHHHHHHHHHHc
Confidence 4999999999998743
No 392
>PRK13946 shikimate kinase; Provisional
Probab=85.46 E-value=0.57 Score=40.04 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
|.|+||||+|+.+++++.
T Consensus 18 ~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 18 LMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 589999999999999763
No 393
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=85.42 E-value=1.7 Score=42.76 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||+|+..+++..
T Consensus 150 ~G~GKs~L~~~ia~~~ 165 (458)
T TIGR01041 150 SGLPHNELAAQIARQA 165 (458)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 6999999999999843
No 394
>PRK13949 shikimate kinase; Provisional
Probab=85.42 E-value=0.58 Score=39.45 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+|||||++.+++...
T Consensus 9 ~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 9 YMGAGKTTLGKALARELG 26 (169)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 579999999999998664
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=85.31 E-value=0.49 Score=39.86 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
.|+|||||++.+++.++.
T Consensus 8 pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 8 PGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 799999999999986643
No 396
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=85.29 E-value=0.61 Score=40.78 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
+|+||||+|+.+...++..
T Consensus 17 SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 17 SGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CCCCHHHHHHHHHHHhCcC
Confidence 6999999999999988766
No 397
>PRK00889 adenylylsulfate kinase; Provisional
Probab=85.23 E-value=0.7 Score=39.01 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
++|+||||+|+.++.....
T Consensus 12 ~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 12 LSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4799999999999986643
No 398
>PRK13948 shikimate kinase; Provisional
Probab=85.17 E-value=0.6 Score=39.89 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
|.|+||||+++.+++++..
T Consensus 18 ~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 18 FMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 5799999999999987643
No 399
>PRK10037 cell division protein; Provisional
Probab=85.13 E-value=0.69 Score=41.63 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecc
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADV 30 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~ 30 (377)
||+||||+|..++..+..+=. ++.+.|.
T Consensus 11 GGvGKTT~a~nLA~~La~~G~-rVLlID~ 38 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLGE-NVLVIDA 38 (250)
T ss_pred CCccHHHHHHHHHHHHHhcCC-cEEEEeC
Confidence 899999999999985554322 3444433
No 400
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=85.07 E-value=2.1 Score=41.60 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.++...+
T Consensus 149 sG~GKTtLl~~I~~~~~ 165 (418)
T TIGR03498 149 SGVGKSTLLSMLARNTD 165 (418)
T ss_pred CCCChHHHHHHHhCCCC
Confidence 69999999998887543
No 401
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=85.04 E-value=0.53 Score=34.73 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
+|+||||++..++..+++
T Consensus 8 ~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 8 GGVGKTTLAANLAAALAK 25 (99)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999996654
No 402
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=85.03 E-value=0.69 Score=41.38 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+..
T Consensus 10 GGvGKTt~a~~LA~~la~ 27 (251)
T TIGR01969 10 GGTGKTTITANLGVALAK 27 (251)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 899999999999985543
No 403
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=85.03 E-value=0.6 Score=39.07 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||||+.++.+.
T Consensus 3 ~sGsGKSTla~~la~~l 19 (163)
T PRK11545 3 VSGSGKSAVASEVAHQL 19 (163)
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 47999999999999866
No 404
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=85.02 E-value=0.77 Score=39.09 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
+|+||||||..+...+..
T Consensus 8 sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 8 SGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 799999999999986653
No 405
>PRK05973 replicative DNA helicase; Provisional
Probab=84.93 E-value=1.4 Score=39.32 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+|||+||.+++.....+-..++++.
T Consensus 73 PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 73 PGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 799999999999875433323344443
No 406
>PRK04040 adenylate kinase; Provisional
Probab=84.82 E-value=0.59 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+++.+.+++.
T Consensus 10 ~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 589999999999998774
No 407
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=84.79 E-value=1.6 Score=36.70 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=12.1
Q ss_pred CCCcHHH-HHHHHHchhccc
Q 040234 2 GGLGKTT-LARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTt-LA~~v~~~~~~~ 20 (377)
.|+|||+ ++..+++.....
T Consensus 33 ~GsGKT~~~~~~~~~~~~~~ 52 (201)
T smart00487 33 TGSGKTLAALLPALEALKRG 52 (201)
T ss_pred CCCchhHHHHHHHHHHhccc
Confidence 6999999 445555544443
No 408
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=84.78 E-value=1 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHHchhcccccc
Q 040234 1 MGGLGKTTLARVVYDLISHEFDG 23 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~ 23 (377)
++|.|||++|..+.+.++++.+.
T Consensus 18 ~PGTGKTtfaLelL~~l~~~~~v 40 (484)
T PF07088_consen 18 EPGTGKTTFALELLNSLKDHGNV 40 (484)
T ss_pred CCCCCceeeehhhHHHHhccCCe
Confidence 58999999999999988887653
No 409
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=84.76 E-value=1 Score=43.21 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=34.2
Q ss_pred HHHHHHHhcCceEEEEEeCCCC-hhh------hhHhhCCCCCCCCCCeEEEEecchhHHhhCCCCCe
Q 040234 66 INMLRVRLRRKKVLVVIDDAAH-PDH------LRRLVGEPDWFGPGSRIIITTRNEHLLKLHPVKKV 125 (377)
Q Consensus 66 ~~~l~~~l~~k~~LLVLDdv~~-~~~------~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~ 125 (377)
...+-+.++.+.-+++.|.... .+. ...+...- ...|..+++.|+.+++.+.+..+..
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela--Re~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA--REAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH--HHhCCeEEEEecCHHHHhccCCcee
Confidence 4456677788888999998643 221 11221110 0246677777777888777654433
No 410
>PRK03846 adenylylsulfate kinase; Provisional
Probab=84.75 E-value=0.81 Score=39.56 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
++|+||||||+.+...+...
T Consensus 32 ~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 32 LSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 36999999999999866443
No 411
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=84.73 E-value=2.2 Score=39.94 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=46.2
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.|+||||+++.+...+....+ .++... - +..++. +.. .........+.....+.++..|+.++=.+
T Consensus 153 tGSGKTTll~aL~~~i~~~~~~~rivti--E-------d~~El~---~~~-~n~v~l~~~~~~~~~~lv~~aLR~~PD~I 219 (323)
T PRK13833 153 TGSGKTTLANAVIAEIVASAPEDRLVIL--E-------DTAEIQ---CAA-ENAVALHTSDTVDMARLLKSTMRLRPDRI 219 (323)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEe--c-------CCcccc---cCC-CCEEEeccCCCcCHHHHHHHHhCCCCCEE
Confidence 599999999999886643322 233221 1 111111 000 00000001122345677888888888899
Q ss_pred EEeCCCChhhhhHhhC
Q 040234 81 VIDDAAHPDHLRRLVG 96 (377)
Q Consensus 81 VLDdv~~~~~~~~l~~ 96 (377)
|+..+.+.+.+..+..
T Consensus 220 ivGEiRg~ea~~~l~a 235 (323)
T PRK13833 220 IVGEVRDGAALTLLKA 235 (323)
T ss_pred EEeecCCHHHHHHHHH
Confidence 9999999887765543
No 412
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=84.71 E-value=0.89 Score=40.65 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
|+|+||||+++.+.+-....
T Consensus 4 paGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999844433
No 413
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=84.66 E-value=0.73 Score=41.82 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+..
T Consensus 10 GGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 10 GGIGKSTTTQNLSAALAE 27 (270)
T ss_pred CcCCHHHHHHHHHHHHHh
Confidence 899999999999985543
No 414
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=84.65 E-value=4.2 Score=34.95 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=26.1
Q ss_pred HHHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEH 115 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~ 115 (377)
.+-+.+..++=+++||+.-. .. .+..++..+. ..+..||++|.+..
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~ 172 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA--DTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCch
Confidence 34455566777999999743 22 2222222222 23667888888753
No 415
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=84.63 E-value=0.66 Score=38.94 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+++++.
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 10 ARGCGKTTVGMALAQALG 27 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999998763
No 416
>PRK07667 uridine kinase; Provisional
Probab=84.61 E-value=0.86 Score=39.27 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||||..+...+..
T Consensus 25 ~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 25 LSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999999986654
No 417
>PRK05480 uridine/cytidine kinase; Provisional
Probab=84.61 E-value=0.61 Score=40.67 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+||||||+.++..+
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 14 GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999999866
No 418
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=84.59 E-value=3.8 Score=37.49 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=52.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
+.|+|||+-++++++... ..|+...++.+ ....++..+....... ......+....+...+.+..-++
T Consensus 102 ~~g~gKt~a~~~y~~s~p-----~~~l~~~~p~~----~a~~~i~~i~~~~~~~---~~~~~~d~~~~~~~~l~~~~~~i 169 (297)
T COG2842 102 YAGLGKTQAAKNYAPSNP-----NALLIEADPSY----TALVLILIICAAAFGA---TDGTINDLTERLMIRLRDTVRLI 169 (297)
T ss_pred cccchhHHHHHhhcccCc-----cceeecCChhh----HHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHccCccee
Confidence 479999999999998543 24444344444 4444444444443332 22344556667777778888899
Q ss_pred EEeCCCC--hhhhhHhhC
Q 040234 81 VIDDAAH--PDHLRRLVG 96 (377)
Q Consensus 81 VLDdv~~--~~~~~~l~~ 96 (377)
+.|+++. ...++.+..
T Consensus 170 ivDEA~~L~~~ale~lr~ 187 (297)
T COG2842 170 IVDEADRLPYRALEELRR 187 (297)
T ss_pred eeehhhccChHHHHHHHH
Confidence 9999987 334444443
No 419
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.51 E-value=2.5 Score=40.14 Aligned_cols=21 Identities=38% Similarity=0.411 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
++|.|||-||+.|+.+-...|
T Consensus 253 PPGTGKTlLAKAvATEc~tTF 273 (491)
T KOG0738|consen 253 PPGTGKTLLAKAVATECGTTF 273 (491)
T ss_pred CCCCcHHHHHHHHHHhhcCeE
Confidence 489999999999998765443
No 420
>PRK05595 replicative DNA helicase; Provisional
Probab=84.49 E-value=3.1 Score=40.94 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHchh--ccccccceEEecchhhcccccCHHHHHHHHHHHHh
Q 040234 2 GGLGKTTLARVVYDLI--SHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLL 52 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~--~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~ 52 (377)
+|+|||++|..++... ++..+ ++++. + +. +..++..+++....
T Consensus 210 pg~GKT~~al~ia~~~a~~~g~~-vl~fS-l-Em-----s~~~l~~R~~a~~~ 254 (444)
T PRK05595 210 PSMGKTTFALNIAEYAALREGKS-VAIFS-L-EM-----SKEQLAYKLLCSEA 254 (444)
T ss_pred CCCChHHHHHHHHHHHHHHcCCc-EEEEe-c-CC-----CHHHHHHHHHHHhc
Confidence 6999999999998743 33333 33332 2 11 56677777776654
No 421
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=84.48 E-value=1.3 Score=37.71 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=18.0
Q ss_pred CCCCcHHHHHHHHHchhccccc
Q 040234 1 MGGLGKTTLARVVYDLISHEFD 22 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~ 22 (377)
+-|+||||+++.+++.++....
T Consensus 4 iDGsGKtT~~~~L~~~l~~~~~ 25 (186)
T PF02223_consen 4 IDGSGKTTQIRLLAEALKEKGY 25 (186)
T ss_dssp STTSSHHHHHHHHHHHHHHTTE
T ss_pred CCCCCHHHHHHHHHHHHHHcCC
Confidence 3699999999999997766543
No 422
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=84.44 E-value=2.4 Score=44.60 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|.||||++..+....+.
T Consensus 376 ~aGTGKTtll~~i~~~~~~ 394 (744)
T TIGR02768 376 RAGTGKSTMLKAAREAWEA 394 (744)
T ss_pred cCCCCHHHHHHHHHHHHHh
Confidence 3799999999998875443
No 423
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=84.36 E-value=3.2 Score=40.71 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHHHchhcccc-ccceEEecchhhcccccCHHHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEF-DGSSFLADVREKCDKEGSVISLQKQLLSDL 51 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f-~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l 51 (377)
+|+|||++|.+++.....+- ..++|+. +-. +..++..+++...
T Consensus 204 pg~GKT~~~l~~a~~~a~~~g~~vl~~S-lEm------~~~~i~~R~~~~~ 247 (434)
T TIGR00665 204 PSMGKTAFALNIAENAAIKEGKPVAFFS-LEM------SAEQLAMRMLSSE 247 (434)
T ss_pred CCCChHHHHHHHHHHHHHhCCCeEEEEe-CcC------CHHHHHHHHHHHh
Confidence 79999999999987543221 2334443 211 5667777776654
No 424
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=84.34 E-value=0.77 Score=41.71 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 9 GGvGKTT~a~nLA~~la~~ 27 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKR 27 (267)
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 8999999999988865544
No 425
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=84.34 E-value=0.62 Score=40.63 Aligned_cols=18 Identities=44% Similarity=0.715 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+||||||+.++....
T Consensus 14 ~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 479999999999998544
No 426
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=84.22 E-value=1.9 Score=42.02 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.++....
T Consensus 164 sG~GKSTLL~~I~~~~~ 180 (433)
T PRK07594 164 PGVGKSTLLAMLCNAPD 180 (433)
T ss_pred CCCCccHHHHHhcCCCC
Confidence 69999999999987443
No 427
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=84.13 E-value=2.2 Score=41.77 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||+|+..+++..
T Consensus 150 sGvGKs~L~~~i~~~~ 165 (466)
T TIGR01040 150 AGLPHNEIAAQICRQA 165 (466)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 6999999999998744
No 428
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.12 E-value=2.6 Score=42.05 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||++..++.....
T Consensus 358 PtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3799999999999875543
No 429
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=84.03 E-value=0.66 Score=39.25 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+|||||++.++..+.
T Consensus 9 ~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 9 PSGAGKDTLLDYARARLA 26 (179)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999988653
No 430
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=83.81 E-value=0.82 Score=41.87 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+...
T Consensus 10 GGVGKTT~a~nLA~~La~~ 28 (279)
T PRK13230 10 GGIGKSTTVCNIAAALAES 28 (279)
T ss_pred CCCcHHHHHHHHHHHHHhC
Confidence 8999999999998855443
No 431
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=83.81 E-value=0.76 Score=37.18 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+||||+|+.++.+.
T Consensus 7 ~~GsGKst~a~~la~~~ 23 (147)
T cd02020 7 PAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999865
No 432
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=83.77 E-value=0.66 Score=39.82 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+||||||+.++...
T Consensus 8 sgsGKTtla~~l~~~~ 23 (187)
T cd02024 8 TNSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 6999999999999865
No 433
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.75 E-value=5.8 Score=38.04 Aligned_cols=17 Identities=29% Similarity=0.151 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+||||++..++....
T Consensus 215 tGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 215 TGVGKTTTLVKLGWQLL 231 (407)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999987553
No 434
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=83.74 E-value=0.96 Score=36.55 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCh--hhhhHhhCCCCCC-CCCCeEEEEecch
Q 040234 76 KKVLVVIDDAAHP--DHLRRLVGEPDWF-GPGSRIIITTRNE 114 (377)
Q Consensus 76 k~~LLVLDdv~~~--~~~~~l~~~l~~~-~~gs~IIvTTR~~ 114 (377)
+.-.|+|+|++.. +....+...+... ....|+|.||+..
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 4456789999873 2222222222111 4567999999854
No 435
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=83.51 E-value=18 Score=33.98 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+||+++|+.+..
T Consensus 38 ~GtGK~~lA~~iH~ 51 (326)
T PRK11608 38 RGTGKELIASRLHY 51 (326)
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999886
No 436
>PRK13764 ATPase; Provisional
Probab=83.46 E-value=1.7 Score=44.19 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+||||+++.+++.+..+-.....+.+..+.. ... ...++ .....+.. ......|+.++=.++
T Consensus 266 TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~-----~~~----~i~q~----~~~~~~~~---~~~~~lLR~rPD~Ii 329 (602)
T PRK13764 266 PGAGKSTFAQALAEFYADMGKIVKTMESPRDLQ-----VPP----EITQY----SKLEGSME---ETADILLLVRPDYTI 329 (602)
T ss_pred CCCCHHHHHHHHHHHHhhCCCEEEEECCCcccc-----CCC----cceEE----eeccccHH---HHHHHHHhhCCCEEE
Confidence 699999999999986654322222333222211 000 00010 00001111 222233677788999
Q ss_pred EeCCCChhhhhHh
Q 040234 82 IDDAAHPDHLRRL 94 (377)
Q Consensus 82 LDdv~~~~~~~~l 94 (377)
+|.+.+.+.++.+
T Consensus 330 vGEiRd~Et~~~~ 342 (602)
T PRK13764 330 YDEMRKTEDFKIF 342 (602)
T ss_pred ECCCCCHHHHHHH
Confidence 9999998887754
No 437
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=83.46 E-value=0.7 Score=39.10 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
||+||||+|..++...
T Consensus 9 gG~GKSt~a~nLA~~l 24 (179)
T cd03110 9 GGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8999999999999866
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=83.42 E-value=0.82 Score=37.01 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
+.|+|||||++.+.+....+
T Consensus 7 psGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CCCCCHHHHHHHHHhcCCcc
Confidence 47999999999999865444
No 439
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=83.42 E-value=0.79 Score=38.54 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.0
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
|.|+||||+.+.+++++.-+|
T Consensus 10 ~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 10 FMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred CCCCCHhHHHHHHHHHcCCCc
Confidence 579999999999999776665
No 440
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=83.41 E-value=0.69 Score=43.03 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|...+-...++
T Consensus 10 GGVGKTT~aaA~A~~~A~~ 28 (305)
T PF02374_consen 10 GGVGKTTVAAALALALARR 28 (305)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHhhC
Confidence 8999999998888754443
No 441
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=83.40 E-value=0.69 Score=37.26 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
-|+|||||++.+++.+
T Consensus 31 lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 31 LGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 4899999999999854
No 442
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=83.40 E-value=0.78 Score=38.76 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||||+.+++...
T Consensus 12 ~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCCcCHHHHHHHHHHHcC
Confidence 579999999999998653
No 443
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=83.39 E-value=0.77 Score=43.63 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=28.8
Q ss_pred hhHHHHHHHhcCceEEEEEeCCCChh-----hhhHhhCCCCCCCCCCeEEEEecch
Q 040234 64 DGINMLRVRLRRKKVLVVIDDAAHPD-----HLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 64 ~~~~~l~~~l~~k~~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
+.+..+-..+....+||.+|...-.+ .++.|...+. ..| .|||.|-++
T Consensus 181 Dpl~~vA~eIa~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf--~~G-vVlvATSNR 233 (467)
T KOG2383|consen 181 DPLPVVADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLF--KNG-VVLVATSNR 233 (467)
T ss_pred CccHHHHHHHhhhceeeeechhhhhhHHHHHHHHHHHHHHH--hCC-eEEEEeCCC
Confidence 44556666777789999999964322 3455555543 235 455555443
No 444
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.31 E-value=3.7 Score=38.48 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=25.4
Q ss_pred hhHHHHHHHhcCceEEEEEeCCCChhhhhHhh
Q 040234 64 DGINMLRVRLRRKKVLVVIDDAAHPDHLRRLV 95 (377)
Q Consensus 64 ~~~~~l~~~l~~k~~LLVLDdv~~~~~~~~l~ 95 (377)
...+.++..|+.++=.||+..+.+.+.+..+.
T Consensus 207 ~~~~ll~~aLR~~PD~IivGEiR~~Ea~~~l~ 238 (319)
T PRK13894 207 NMTALLKTTLRMRPDRILVGEVRGPEALDLLM 238 (319)
T ss_pred CHHHHHHHHhcCCCCEEEEeccCCHHHHHHHH
Confidence 45677888888888889999999988776543
No 445
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=83.25 E-value=0.73 Score=38.21 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+++...
T Consensus 8 ~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 8 LPGSGKTTVARELAEHLG 25 (179)
T ss_pred CCCCChhHHHHHHHHHhC
Confidence 489999999999998553
No 446
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=83.24 E-value=0.91 Score=41.31 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecc
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADV 30 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~ 30 (377)
||+||||+|..++..+..+ ..++.+.|.
T Consensus 11 GGVGKTT~~~nLA~~la~~-G~kVLliD~ 38 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFAKL-GKKVLQIGC 38 (270)
T ss_pred CCCCHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 8999999999998855433 223444434
No 447
>PRK10646 ADP-binding protein; Provisional
Probab=83.23 E-value=0.7 Score=38.18 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=13.5
Q ss_pred CCcHHHHHHHHHchh
Q 040234 3 GLGKTTLARVVYDLI 17 (377)
Q Consensus 3 GiGKTtLA~~v~~~~ 17 (377)
|+||||+++.+++.+
T Consensus 38 GaGKTtf~rgl~~~L 52 (153)
T PRK10646 38 GAGKTTFSRGFLQAL 52 (153)
T ss_pred CCCHHHHHHHHHHHc
Confidence 899999999999844
No 448
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=83.18 E-value=1.7 Score=37.98 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+-|+||||+++.+++.++.+.-.+++..
T Consensus 11 iDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 11 IDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3599999999999998877755555543
No 449
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=83.03 E-value=0.98 Score=40.30 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++.....+
T Consensus 11 GGvGKTt~a~nla~~la~~ 29 (246)
T TIGR03371 11 GGVGKTTLTANLASALKLL 29 (246)
T ss_pred CCccHHHHHHHHHHHHHhC
Confidence 8999999999999866543
No 450
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=83.01 E-value=7.9 Score=33.80 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||+++..+..
T Consensus 9 tGsGKSs~~N~ilg 22 (212)
T PF04548_consen 9 TGSGKSSLGNSILG 22 (212)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999986
No 451
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=82.91 E-value=0.84 Score=37.25 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=17.4
Q ss_pred CCCcHHHHHHHHHchhcccc
Q 040234 2 GGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f 21 (377)
+|+||||++..+++++.-.|
T Consensus 4 sG~GKStvg~~lA~~lg~~f 23 (161)
T COG3265 4 SGSGKSTVGSALAERLGAKF 23 (161)
T ss_pred CccCHHHHHHHHHHHcCCce
Confidence 69999999999999887554
No 452
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=82.86 E-value=3.5 Score=40.05 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.++...+
T Consensus 146 sG~GKTtLl~~i~~~~~ 162 (413)
T TIGR03497 146 SGVGKSTLLGMIARNAK 162 (413)
T ss_pred CCCCHHHHHHHHhCCCC
Confidence 69999999998887543
No 453
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=82.85 E-value=4.4 Score=39.89 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.|.|||.+|..++.+++.. .++++
T Consensus 64 TGaGKT~va~~~~~~~~~~---~Lvlv 87 (442)
T COG1061 64 TGAGKTVVAAEAIAELKRS---TLVLV 87 (442)
T ss_pred CCCCHHHHHHHHHHHhcCC---EEEEE
Confidence 6999999999999987776 55555
No 454
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=82.83 E-value=1.5 Score=41.31 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc-------ccCcc--------chhhhH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA-------DNNIR--------NVYDGI 66 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~--------~~~~~~ 66 (377)
+|+|||.|.+++.+.+.........+.-+++..+ .-.++..++.+.-.... ..++. .--..+
T Consensus 156 AGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtR---EGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~A 232 (468)
T COG0055 156 AGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMA 232 (468)
T ss_pred CCccceeeHHHHHHHHHHHcCCeEEEEecccccc---chHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHH
Confidence 6999999999999977766665544454666543 22344444444311000 00110 111223
Q ss_pred HHHHHHhcCceEEEEEeCCCC----hhhhhHhhCCCCC
Q 040234 67 NMLRVRLRRKKVLVVIDDAAH----PDHLRRLVGEPDW 100 (377)
Q Consensus 67 ~~l~~~l~~k~~LLVLDdv~~----~~~~~~l~~~l~~ 100 (377)
+.+|.. .++..||.+||+-. ..++..++...|.
T Consensus 233 EyfRD~-~gqdVLlFIDNIfRftQAGsEVSalLGr~PS 269 (468)
T COG0055 233 EYFRDE-EGQDVLLFIDNIFRFTQAGSEVSALLGRMPS 269 (468)
T ss_pred HHhhcc-cCCeEEEEehhhhHHhhcchHHHHHhccCcc
Confidence 334432 46799999999854 3445666655543
No 455
>PRK09099 type III secretion system ATPase; Provisional
Probab=82.78 E-value=3.1 Score=40.68 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.++....
T Consensus 172 sG~GKTtLl~~ia~~~~ 188 (441)
T PRK09099 172 AGVGKSTLMGMFARGTQ 188 (441)
T ss_pred CCCCHHHHHHHHhCCCC
Confidence 69999999999987443
No 456
>COG1485 Predicted ATPase [General function prediction only]
Probab=82.78 E-value=2.9 Score=39.20 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEEE
Q 040234 3 GLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVVI 82 (377)
Q Consensus 3 GiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLVL 82 (377)
|.|||-|.-..|+.+..+=..++ ...+.+..+-+.+.... ...+....+-..+...-.+|.+
T Consensus 75 GrGKT~LMD~Fy~~lp~~~k~R~-------------HFh~FM~~vH~~l~~l~-----g~~dpl~~iA~~~~~~~~vLCf 136 (367)
T COG1485 75 GRGKTMLMDLFYESLPGERKRRL-------------HFHRFMARVHQRLHTLQ-----GQTDPLPPIADELAAETRVLCF 136 (367)
T ss_pred CccHHHHHHHHHhhCCccccccc-------------cHHHHHHHHHHHHHHHc-----CCCCccHHHHHHHHhcCCEEEe
Confidence 78999999999984432211111 11122222222222211 1113455566667777789999
Q ss_pred eCC--CChh---hhhHhhCCCCCCCCCCeEEEEec
Q 040234 83 DDA--AHPD---HLRRLVGEPDWFGPGSRIIITTR 112 (377)
Q Consensus 83 Ddv--~~~~---~~~~l~~~l~~~~~gs~IIvTTR 112 (377)
|.. .|.. .+..|...+- ..|..++.||.
T Consensus 137 DEF~VtDI~DAMiL~rL~~~Lf--~~GV~lvaTSN 169 (367)
T COG1485 137 DEFEVTDIADAMILGRLLEALF--ARGVVLVATSN 169 (367)
T ss_pred eeeeecChHHHHHHHHHHHHHH--HCCcEEEEeCC
Confidence 984 4432 3444544443 34655555553
No 457
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=82.72 E-value=0.65 Score=39.74 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=29.6
Q ss_pred HHHHHhcC--ceEEEEEeCCCC---hh---h-hhHhhCCCCCCCCCCeEEEEecchhHHhhC
Q 040234 68 MLRVRLRR--KKVLVVIDDAAH---PD---H-LRRLVGEPDWFGPGSRIIITTRNEHLLKLH 120 (377)
Q Consensus 68 ~l~~~l~~--k~~LLVLDdv~~---~~---~-~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~ 120 (377)
.+...+.. ++-|+++|..-. .. . ...+...+.. ..++.+|++|....+....
T Consensus 68 ~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 68 ETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 34444443 788999999743 11 1 1222222211 1367899999988765543
No 458
>PRK14532 adenylate kinase; Provisional
Probab=82.71 E-value=0.82 Score=39.06 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 8 PPAAGKGTQAKRLVEER 24 (188)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999999754
No 459
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=82.67 E-value=0.79 Score=38.95 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.+++..
T Consensus 11 ~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999754
No 460
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.65 E-value=3 Score=41.53 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=25.1
Q ss_pred hhHHHHHHHhcCceEEEEEeCCCChhhhhHh
Q 040234 64 DGINMLRVRLRRKKVLVVIDDAAHPDHLRRL 94 (377)
Q Consensus 64 ~~~~~l~~~l~~k~~LLVLDdv~~~~~~~~l 94 (377)
...+.++..|+..+=.+++.++.+.+.....
T Consensus 299 ~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a 329 (486)
T TIGR02533 299 TFAAGLRAILRQDPDIIMVGEIRDLETAQIA 329 (486)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 4567888899999999999999998765443
No 461
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=82.65 E-value=1.9 Score=36.84 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+||||+++.+++.+..
T Consensus 8 ~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 8 IDGAGKTTLIELLAERLEA 26 (200)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3699999999999987643
No 462
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=82.54 E-value=0.67 Score=40.97 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=27.1
Q ss_pred CceEEEEEeCCCC----hh--h-hhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 75 RKKVLVVIDDAAH----PD--H-LRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 75 ~k~~LLVLDdv~~----~~--~-~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+++-|++||.... .+ . ...+...+.. ..++.+|++|....++..
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 5689999999632 11 1 1223333322 247889999999877554
No 463
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=82.38 E-value=3.9 Score=40.28 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHchhcc---ccccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISH---EFDGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~---~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
.|+|||+|+..+++.... +-+..+-+..+++..+ .+.+++..+..
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgr---Ev~e~~~~~~~ 199 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFE---EANFFMEDFEE 199 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccH---HHHHHHHHHHh
Confidence 699999999999984321 1112333333555431 44555555544
No 464
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=82.37 E-value=0.81 Score=37.41 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+||||||.+++...
T Consensus 16 PG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCCchhHHHHHHHHh
Confidence 7999999999999743
No 465
>PRK09165 replicative DNA helicase; Provisional
Probab=82.35 E-value=4.1 Score=40.69 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||+||..++..+.
T Consensus 226 pg~GKT~~al~ia~~~a 242 (497)
T PRK09165 226 PSMGKTALATNIAFNAA 242 (497)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 79999999999887553
No 466
>COG3910 Predicted ATPase [General function prediction only]
Probab=82.27 E-value=7 Score=33.51 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhcCceEEEEEeCCCCh----hhhhHhh--CCCCCCCCCCeEEEEecchhHHhhCCCCCeeecC
Q 040234 63 YDGINMLRVRLRRKKVLVVIDDAAHP----DHLRRLV--GEPDWFGPGSRIIITTRNEHLLKLHPVKKVYKLE 129 (377)
Q Consensus 63 ~~~~~~l~~~l~~k~~LLVLDdv~~~----~~~~~l~--~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~ 129 (377)
+.....+.+++.++- +-|||.-+.. .|++-+. ..+. ..|+.||+.|.++-+.. ++.+..++..
T Consensus 134 Esf~~i~~~rf~~~G-iYiLDEPEa~LSp~RQlella~l~~la--~sGaQ~IiATHSPiLlA-iP~A~I~~~~ 202 (233)
T COG3910 134 ESFLAIFHNRFNGQG-IYILDEPEAALSPSRQLELLAILRDLA--DSGAQIIIATHSPILLA-IPGAEIYEIS 202 (233)
T ss_pred hHHHHHHHHHhccCc-eEEecCccccCCHHHHHHHHHHHHHHH--hcCCeEEEEecChhhee-CCCcEEEEEe
Confidence 344555666666554 6788987642 2332221 1111 45789999999985433 5556665543
No 467
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=82.26 E-value=1 Score=41.10 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+..
T Consensus 9 GGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 9 GGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CcCcHHHHHHHHHHHHHH
Confidence 899999999999985543
No 468
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=82.22 E-value=2.6 Score=44.65 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=44.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceE-E
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKV-L 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~-L 79 (377)
+.|+|||.||+.++.-+-+..+.-+-+. ++ +.+. ..++.+.++.- --.+....+.+.++.++| +
T Consensus 599 pdgvGKt~lAkaLA~~~Fgse~~~IriD-ms----------e~~e--vskligsp~gy--vG~e~gg~LteavrrrP~sV 663 (898)
T KOG1051|consen 599 PDGVGKTELAKALAEYVFGSEENFIRLD-MS----------EFQE--VSKLIGSPPGY--VGKEEGGQLTEAVKRRPYSV 663 (898)
T ss_pred CCchhHHHHHHHHHHHHcCCccceEEec-hh----------hhhh--hhhccCCCccc--ccchhHHHHHHHHhcCCceE
Confidence 3699999999999997766655545443 33 3333 23322221111 112234467777888876 6
Q ss_pred EEEeCCCCh
Q 040234 80 VVIDDAAHP 88 (377)
Q Consensus 80 LVLDdv~~~ 88 (377)
++||||+..
T Consensus 664 VLfdeIEkA 672 (898)
T KOG1051|consen 664 VLFEEIEKA 672 (898)
T ss_pred EEEechhhc
Confidence 778999764
No 469
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.22 E-value=5.4 Score=40.17 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
..|+|||||++.+..
T Consensus 369 ~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 369 PSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCCCHHHHHHHHhc
Confidence 369999999999986
No 470
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=82.20 E-value=18 Score=36.30 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||++|+.+.+.-
T Consensus 219 ~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 219 TGVGKELVARAIHAAS 234 (509)
T ss_pred CCccHHHHHHHHHHhC
Confidence 6999999999999843
No 471
>PRK14529 adenylate kinase; Provisional
Probab=82.14 E-value=4.4 Score=35.80 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=42.5
Q ss_pred CCCCcHHHHHHHHHchhccc-cccceEEe-cchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCc-e
Q 040234 1 MGGLGKTTLARVVYDLISHE-FDGSSFLA-DVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRK-K 77 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~-f~~~~w~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k-~ 77 (377)
++|+||||+|+.++.+..-. .+.+-.+. .+.... ......+.++.+ ......+-....+.+.+.+. .
T Consensus 8 ~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t----~lg~~i~~~i~~------G~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGT----ELGKKAKEYIDR------GDLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCC----hHHHHHHHHHhc------cCcchHHHHHHHHHHHHhccCC
Confidence 47999999999999865322 22222211 111111 233333333322 12223344556666666432 4
Q ss_pred EEEEEeCCC-ChhhhhHh
Q 040234 78 VLVVIDDAA-HPDHLRRL 94 (377)
Q Consensus 78 ~LLVLDdv~-~~~~~~~l 94 (377)
--+|||..- +.+|.+.|
T Consensus 78 ~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred CcEEEeCCCCCHHHHHHH
Confidence 468999974 44554443
No 472
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=82.13 E-value=1.3 Score=41.37 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=17.0
Q ss_pred CCCCcHHHHHHHHHchhccccc
Q 040234 1 MGGLGKTTLARVVYDLISHEFD 22 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~ 22 (377)
.||+||||+|...+-...+...
T Consensus 10 KGGVGKTT~aaA~A~~lA~~g~ 31 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAESGK 31 (322)
T ss_pred CCcccHHHHHHHHHHHHHHcCC
Confidence 3999999999998776555543
No 473
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=82.09 E-value=1.1 Score=40.36 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+..
T Consensus 11 GGvGKTt~a~~lA~~la~ 28 (261)
T TIGR01968 11 GGVGKTTTTANLGTALAR 28 (261)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 899999999999985543
No 474
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=82.07 E-value=1.1 Score=40.96 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+.+
T Consensus 10 GGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 899999999998885543
No 475
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=81.99 E-value=1.1 Score=40.94 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+.+
T Consensus 10 GGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 10 GGIGKSTTTQNLTAALST 27 (273)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 899999999999885543
No 476
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.94 E-value=4.8 Score=41.05 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=52.5
Q ss_pred CCCcHHH-HHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccC---------ccchhhh-----
Q 040234 2 GGLGKTT-LARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNN---------IRNVYDG----- 65 (377)
Q Consensus 2 gGiGKTt-LA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~~~~~----- 65 (377)
.|+|||| ||+.++.. -|. .++.- +.+.. -+....+.+.+...+++..... ..+.+..
T Consensus 380 TGSGKTTQl~QyL~ed---GY~~~GmIG--cTQPR--RvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~IkymT 452 (1042)
T KOG0924|consen 380 TGSGKTTQLAQYLYED---GYADNGMIG--CTQPR--RVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMT 452 (1042)
T ss_pred CCCCchhhhHHHHHhc---ccccCCeee--ecCch--HHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEEEec
Confidence 5999998 77777762 222 23322 22321 1155566677777764332211 0111110
Q ss_pred -HHHHHHHhcC----ceEEEEEeCCCC----hhhhhHhhCCCCCCCCCCeEEEEecc
Q 040234 66 -INMLRVRLRR----KKVLVVIDDAAH----PDHLRRLVGEPDWFGPGSRIIITTRN 113 (377)
Q Consensus 66 -~~~l~~~l~~----k~~LLVLDdv~~----~~~~~~l~~~l~~~~~gs~IIvTTR~ 113 (377)
--.||+.|.+ |=-.+|+|.+-. .+.+--|+.........-|+||||-.
T Consensus 453 DGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 453 DGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSAT 509 (1042)
T ss_pred cchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecc
Confidence 1235555554 445889999854 23222222211111446799999865
No 477
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=81.90 E-value=4.6 Score=39.44 Aligned_cols=43 Identities=28% Similarity=0.317 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHchhc--cccccceEEecchhhcccccCHHHHHHHHHHHHh
Q 040234 2 GGLGKTTLARVVYDLIS--HEFDGSSFLADVREKCDKEGSVISLQKQLLSDLL 52 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~--~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~ 52 (377)
+|+|||++|..++.... ...+ ++|+. + +. +..++..+++....
T Consensus 203 pg~GKT~~al~ia~~~a~~~g~~-v~~fS-l-Em-----~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 203 PSMGKTTLALNIAENVALREGKP-VLFFS-L-EM-----SAEQLGERLLASKS 247 (421)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCc-EEEEE-C-CC-----CHHHHHHHHHHHHc
Confidence 79999999999996443 3333 33433 2 11 56677777776543
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=81.86 E-value=0.89 Score=39.22 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+||||||+.+...+
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999998865
No 479
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=81.85 E-value=0.92 Score=39.28 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 11 ~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 11 IPGVGKTSISGYIARHR 27 (197)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999999864
No 480
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=81.83 E-value=1.1 Score=39.60 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=25.6
Q ss_pred cCceEEEEEeCC---CChhh----hhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 74 RRKKVLVVIDDA---AHPDH----LRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 74 ~~k~~LLVLDdv---~~~~~----~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
...+-|++||.. -+..+ ...+...+.. ..++.+|+||....+...
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~ 158 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTAL 158 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHH
Confidence 356789999998 33211 1111122211 246789999987666543
No 481
>PRK06761 hypothetical protein; Provisional
Probab=81.72 E-value=0.98 Score=41.39 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
++|+||||+|+.+++++...
T Consensus 11 ~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CCCCCHHHHHHHHHHhcCcC
Confidence 47999999999999976543
No 482
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=81.68 E-value=5.2 Score=40.23 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=32.8
Q ss_pred HHHHhcCceEEEEEeCCCC------hhhhhHhhCCCCCCCCCCeEEEEecchhHHhhCC
Q 040234 69 LRVRLRRKKVLVVIDDAAH------PDHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHP 121 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~------~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~ 121 (377)
|.+.|-.++=+|+||.--+ ...++.++.. -+| .|||.|.++.....+.
T Consensus 164 LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V~ 217 (530)
T COG0488 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNVA 217 (530)
T ss_pred HHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHHh
Confidence 4455566788999999654 2334555544 445 7999999998776653
No 483
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=81.46 E-value=0.84 Score=39.90 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||++..++..+.+
T Consensus 9 GGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 9 GGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CcCcHHHHHHHHHHHHHH
Confidence 899999999988885544
No 484
>PRK14530 adenylate kinase; Provisional
Probab=81.28 E-value=1 Score=39.49 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 11 ~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 11 APGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999855
No 485
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=81.19 E-value=3.7 Score=40.22 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||++.+....
T Consensus 172 sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 172 SGVGKSTLLGMIARNT 187 (440)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999988754
No 486
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=81.13 E-value=2.3 Score=37.13 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|.|||+++..+...+
T Consensus 25 pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHh
Confidence 47999998887777755
No 487
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=80.93 E-value=1.1 Score=38.40 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+|||||++.++...
T Consensus 10 ~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 10 PSGSGKDSLLAALRQRE 26 (186)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 47999999999998754
No 488
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=80.87 E-value=5.1 Score=39.30 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
.|+|||||++.++..
T Consensus 177 sG~GKSTLl~~I~g~ 191 (451)
T PRK05688 177 TGVGKSVLLGMMTRF 191 (451)
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999998874
No 489
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=80.81 E-value=0.95 Score=37.01 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=13.3
Q ss_pred CCcHHHHHHHHHchh
Q 040234 3 GLGKTTLARVVYDLI 17 (377)
Q Consensus 3 GiGKTtLA~~v~~~~ 17 (377)
|.|||||++.+++-+
T Consensus 35 GAGKTtf~rgi~~~L 49 (149)
T COG0802 35 GAGKTTLVRGIAKGL 49 (149)
T ss_pred cCChHHHHHHHHHHc
Confidence 899999999999843
No 490
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=80.70 E-value=1.3 Score=38.53 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++.....
T Consensus 45 gG~GkSt~a~nLA~~la~ 62 (207)
T TIGR03018 45 PGEGKSFTAINLAISLAQ 62 (207)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 899999999999986543
No 491
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.63 E-value=13 Score=37.01 Aligned_cols=17 Identities=47% Similarity=0.417 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|.|||-||+.++.+-
T Consensus 345 PPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 345 PPGTGKTLLARAVAGEA 361 (752)
T ss_pred CCCCchhHHHHHhhccc
Confidence 47999999999999743
No 492
>PRK04182 cytidylate kinase; Provisional
Probab=80.60 E-value=1.1 Score=37.60 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+++++.
T Consensus 8 ~~GsGKstia~~la~~lg 25 (180)
T PRK04182 8 PPGSGKTTVARLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998653
No 493
>PRK15453 phosphoribulokinase; Provisional
Probab=80.45 E-value=6.2 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+||||+|+.+++.++
T Consensus 14 SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 14 SGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 79999999999997554
No 494
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=80.44 E-value=5.9 Score=41.55 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=20.9
Q ss_pred eEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEe
Q 040234 77 KVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITT 111 (377)
Q Consensus 77 ~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTT 111 (377)
.-+||+|.+.- ...+..++..++ .+++||+.-
T Consensus 417 ~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvG 450 (720)
T TIGR01448 417 CDLLIVDESSMMDTWLALSLLAALP---DHARLLLVG 450 (720)
T ss_pred CCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEEC
Confidence 45999999865 344556665543 467877654
No 495
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=80.43 E-value=2.1 Score=41.75 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||++.++...
T Consensus 166 sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 166 SGVGKSTLMGMIVKGC 181 (434)
T ss_pred CCCCHHHHHHHHhhcc
Confidence 6999999999998743
No 496
>PRK08506 replicative DNA helicase; Provisional
Probab=80.39 E-value=5.9 Score=39.33 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHh
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLL 52 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~ 52 (377)
+|+|||++|..++.....+-..++++. +- .+..++..+++....
T Consensus 201 pg~GKT~fal~ia~~~~~~g~~V~~fS-lE------Ms~~ql~~Rlla~~s 244 (472)
T PRK08506 201 PSMGKTTLCLNMALKALNQDKGVAFFS-LE------MPAEQLMLRMLSAKT 244 (472)
T ss_pred CCCChHHHHHHHHHHHHhcCCcEEEEe-Cc------CCHHHHHHHHHHHhc
Confidence 799999999999885532212233332 21 166777777777654
No 497
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.23 E-value=22 Score=35.57 Aligned_cols=56 Identities=5% Similarity=-0.181 Sum_probs=32.5
Q ss_pred CCCCeeecCCCChhhhHHHHHHHhcCCCCC-c---hhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 121 PVKKVYKLEALTYDEAFRLLCLKAFDTHKP-L---EEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 121 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~---~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
+....+...|..+.--.+.+.+..-....+ . -........|+..++| ++--||..+
T Consensus 257 ~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~G-DIRsAInsL 316 (634)
T KOG1970|consen 257 PRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGG-DIRSAINSL 316 (634)
T ss_pred cCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCc-cHHHHHhHh
Confidence 344566777777776666665543221111 1 1235567888999988 566666543
No 498
>PRK06820 type III secretion system ATPase; Validated
Probab=80.14 E-value=4.7 Score=39.40 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||||++.++...
T Consensus 172 sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 172 AGVGKSTLLGMLCADS 187 (440)
T ss_pred CCCChHHHHHHHhccC
Confidence 6999999999888743
No 499
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=80.11 E-value=3.7 Score=40.23 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||++.+....
T Consensus 167 sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 167 SGVGKSTLMGMIARNT 182 (438)
T ss_pred CCCCHHHHHHHHhccc
Confidence 6999999999888744
No 500
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.11 E-value=5.9 Score=41.33 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=26.1
Q ss_pred HHHHHhcCceEEEEEeCCCCh------hh-hhHhhCCCCCCCCCCeEEEEecchhH
Q 040234 68 MLRVRLRRKKVLVVIDDAAHP------DH-LRRLVGEPDWFGPGSRIIITTRNEHL 116 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~~------~~-~~~l~~~l~~~~~gs~IIvTTR~~~v 116 (377)
.+-+.+-.++-+|+||.+-+. .. .+.+.... ...+.|+||=|...+
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~---~~~T~I~IaHRl~ti 671 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL---QGRTVIIIAHRLSTI 671 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh---cCCeEEEEEccchHh
Confidence 355666778889999997541 11 23333321 234566666665544
Done!