Query 040234
Match_columns 377
No_of_seqs 334 out of 2083
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 09:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.4E-30 1.2E-34 257.5 8.9 207 1-221 160-378 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 5.2E-26 1.8E-30 247.3 13.7 220 1-243 155-396 (1249)
3 1vt4_I APAF-1 related killer D 99.9 1.2E-24 4.2E-29 223.6 11.8 190 1-221 158-370 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 3.2E-23 1.1E-27 209.1 13.3 217 1-244 155-397 (591)
5 1w5s_A Origin recognition comp 99.2 3.5E-11 1.2E-15 115.2 10.7 171 1-178 60-266 (412)
6 2qen_A Walker-type ATPase; unk 99.1 6.5E-10 2.2E-14 103.8 12.4 169 1-180 39-248 (350)
7 2fna_A Conserved hypothetical 99.0 1.3E-09 4.3E-14 102.1 11.1 100 76-181 137-253 (357)
8 1njg_A DNA polymerase III subu 98.9 4.7E-09 1.6E-13 92.2 9.5 102 75-180 125-230 (250)
9 2qby_B CDC6 homolog 3, cell di 98.9 2.2E-08 7.6E-13 94.8 14.5 160 1-173 53-240 (384)
10 2qby_A CDC6 homolog 1, cell di 98.9 3.1E-09 1.1E-13 100.5 8.6 169 1-176 53-243 (386)
11 2v1u_A Cell division control p 98.9 8.2E-09 2.8E-13 97.6 10.2 163 1-174 52-245 (387)
12 1fnn_A CDC6P, cell division co 98.8 5.4E-08 1.9E-12 92.1 13.4 168 1-175 52-244 (389)
13 2chg_A Replication factor C sm 98.7 1.1E-07 3.8E-12 82.2 11.2 154 1-178 46-204 (226)
14 1sxj_B Activator 1 37 kDa subu 98.4 1E-06 3.5E-11 81.0 9.1 151 1-175 50-206 (323)
15 2z4s_A Chromosomal replication 98.2 3.7E-06 1.3E-10 81.1 9.5 156 1-179 138-307 (440)
16 1iqp_A RFCS; clamp loader, ext 98.1 6.7E-06 2.3E-10 75.6 8.5 99 75-177 109-211 (327)
17 2chq_A Replication factor C sm 98.1 2.1E-05 7.2E-10 72.0 11.9 98 75-176 101-202 (319)
18 3te6_A Regulatory protein SIR3 98.1 2E-05 6.7E-10 72.3 10.8 139 1-145 53-212 (318)
19 3bos_A Putative DNA replicatio 98.0 3.2E-06 1.1E-10 74.0 4.0 144 1-179 60-218 (242)
20 1jr3_A DNA polymerase III subu 98.0 4.7E-05 1.6E-09 71.3 11.6 101 75-179 118-222 (373)
21 1a5t_A Delta prime, HOLB; zinc 97.9 8.1E-05 2.8E-09 69.0 11.2 95 75-178 107-205 (334)
22 1hqc_A RUVB; extended AAA-ATPa 97.8 6.5E-05 2.2E-09 69.0 10.1 72 104-179 138-212 (324)
23 1l8q_A Chromosomal replication 97.8 0.00024 8.1E-09 65.4 13.7 146 1-174 45-204 (324)
24 3uk6_A RUVB-like 2; hexameric 97.7 0.00033 1.1E-08 65.5 11.9 92 77-176 190-301 (368)
25 1d2n_A N-ethylmaleimide-sensit 97.6 0.00028 9.5E-09 63.2 9.9 88 73-167 121-228 (272)
26 1sxj_D Activator 1 41 kDa subu 97.6 0.00024 8.2E-09 65.9 9.6 99 75-177 132-234 (353)
27 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00074 2.5E-08 59.8 12.0 145 1-172 47-215 (262)
28 3pvs_A Replication-associated 97.5 0.00027 9.3E-09 68.1 9.6 144 1-175 58-212 (447)
29 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.0012 4.2E-08 60.6 13.2 90 74-167 103-213 (322)
30 3h4m_A Proteasome-activating n 97.5 0.00012 4E-09 66.0 5.9 140 1-167 59-221 (285)
31 1sxj_E Activator 1 40 kDa subu 97.5 0.00066 2.3E-08 63.0 10.9 100 75-178 133-237 (354)
32 1sxj_A Activator 1 95 kDa subu 97.5 0.00038 1.3E-08 68.5 9.5 93 75-174 147-248 (516)
33 3eie_A Vacuolar protein sortin 97.4 0.00066 2.2E-08 62.4 10.5 90 74-167 108-218 (322)
34 2qp9_X Vacuolar protein sortin 97.4 0.0011 3.7E-08 61.9 11.5 90 74-167 141-251 (355)
35 1jbk_A CLPB protein; beta barr 97.4 7.3E-05 2.5E-09 62.5 2.7 18 1-18 51-68 (195)
36 3syl_A Protein CBBX; photosynt 97.4 0.0014 4.7E-08 59.6 11.4 67 77-145 131-218 (309)
37 2zan_A Vacuolar protein sortin 97.3 0.002 6.8E-08 62.0 12.9 90 74-167 225-335 (444)
38 3ec2_A DNA replication protein 97.3 0.00027 9.2E-09 59.0 5.3 90 1-114 46-143 (180)
39 3pfi_A Holliday junction ATP-d 97.3 0.00053 1.8E-08 63.3 7.8 71 105-179 155-228 (338)
40 3u61_B DNA polymerase accessor 97.2 0.0012 4.3E-08 60.4 9.7 140 2-173 57-211 (324)
41 3cf0_A Transitional endoplasmi 97.1 0.0057 1.9E-07 55.5 13.0 143 1-173 57-223 (301)
42 3d8b_A Fidgetin-like protein 1 97.1 0.0049 1.7E-07 57.4 12.3 99 74-178 174-295 (357)
43 1sxj_C Activator 1 40 kDa subu 97.0 0.0035 1.2E-07 57.9 10.9 95 76-174 110-208 (340)
44 3vfd_A Spastin; ATPase, microt 97.0 0.0048 1.6E-07 58.2 11.4 50 124-177 275-325 (389)
45 3b9p_A CG5977-PA, isoform A; A 97.0 0.014 4.8E-07 52.5 14.0 68 104-177 159-232 (297)
46 4b4t_J 26S protease regulatory 96.7 0.029 9.9E-07 52.8 14.2 142 1-173 190-356 (405)
47 2gno_A DNA polymerase III, gam 96.7 0.0026 9E-08 57.9 6.8 121 1-144 26-152 (305)
48 2r62_A Cell division protease 96.5 0.0058 2E-07 54.2 7.5 72 74-145 101-197 (268)
49 4b4t_H 26S protease regulatory 96.3 0.071 2.4E-06 50.9 14.0 138 1-167 251-413 (467)
50 1ofh_A ATP-dependent HSL prote 96.3 0.031 1.1E-06 50.3 11.2 19 124-142 195-213 (310)
51 2kjq_A DNAA-related protein; s 96.2 0.0027 9.3E-08 51.3 3.3 18 2-19 45-62 (149)
52 4b4t_L 26S protease subunit RP 96.2 0.033 1.1E-06 53.1 11.0 142 1-173 223-389 (437)
53 3hu3_A Transitional endoplasmi 96.2 0.0082 2.8E-07 58.3 7.0 139 1-167 246-405 (489)
54 4fcw_A Chaperone protein CLPB; 96.1 0.012 4.2E-07 53.2 7.6 19 1-19 55-73 (311)
55 2ce7_A Cell division protein F 96.1 0.028 9.5E-07 54.3 10.1 142 1-171 57-221 (476)
56 2p65_A Hypothetical protein PF 96.1 0.013 4.4E-07 48.3 6.9 19 1-19 51-69 (187)
57 1g5t_A COB(I)alamin adenosyltr 96.1 0.0031 1.1E-07 53.2 3.0 47 65-114 108-163 (196)
58 3t15_A Ribulose bisphosphate c 96.0 0.018 6.1E-07 52.0 8.0 19 1-19 44-62 (293)
59 2w58_A DNAI, primosome compone 96.0 0.0082 2.8E-07 50.7 5.4 27 1-27 62-88 (202)
60 3pxi_A Negative regulator of g 96.0 0.0088 3E-07 61.5 6.6 117 1-144 529-675 (758)
61 4b4t_K 26S protease regulatory 95.9 0.026 8.9E-07 53.7 9.1 21 1-21 214-234 (428)
62 2bjv_A PSP operon transcriptio 95.9 0.014 4.7E-07 51.7 6.6 17 2-18 38-54 (265)
63 1r6b_X CLPA protein; AAA+, N-t 95.9 0.05 1.7E-06 55.9 11.7 68 75-144 277-362 (758)
64 4b4t_M 26S protease regulatory 95.8 0.027 9.2E-07 53.6 8.5 138 1-167 223-385 (434)
65 2c9o_A RUVB-like 1; hexameric 95.7 0.14 4.9E-06 49.1 13.4 93 78-175 297-407 (456)
66 3n70_A Transport activator; si 95.7 0.011 3.8E-07 47.2 4.7 16 2-17 33-48 (145)
67 3pxg_A Negative regulator of g 95.5 0.028 9.5E-07 54.3 7.8 67 74-144 265-338 (468)
68 4b4t_I 26S protease regulatory 95.5 0.075 2.6E-06 50.3 10.4 138 1-167 224-386 (437)
69 1qvr_A CLPB protein; coiled co 95.5 0.057 1.9E-06 56.3 10.4 67 75-143 262-344 (854)
70 2cvh_A DNA repair and recombin 95.3 0.038 1.3E-06 47.0 7.0 15 1-15 28-42 (220)
71 1lv7_A FTSH; alpha/beta domain 95.2 0.084 2.9E-06 46.2 9.2 19 1-19 53-71 (257)
72 1ojl_A Transcriptional regulat 95.1 0.052 1.8E-06 49.2 7.9 16 2-17 34-49 (304)
73 3pxi_A Negative regulator of g 95.1 0.23 7.9E-06 50.9 13.6 71 70-144 261-338 (758)
74 3cf2_A TER ATPase, transitiona 95.1 0.019 6.4E-07 59.0 5.1 144 1-173 246-409 (806)
75 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.02 7E-07 52.1 4.8 63 1-87 131-193 (331)
76 2x8a_A Nuclear valosin-contain 95.0 0.15 5.3E-06 45.3 10.6 39 106-144 148-191 (274)
77 1in4_A RUVB, holliday junction 94.7 0.048 1.7E-06 50.1 6.5 50 124-177 173-222 (334)
78 1ixz_A ATP-dependent metallopr 94.7 0.15 5.1E-06 44.5 9.3 59 106-167 156-219 (254)
79 3m6a_A ATP-dependent protease 94.7 0.066 2.2E-06 52.7 7.6 38 104-144 224-266 (543)
80 1iy2_A ATP-dependent metallopr 94.3 0.16 5.4E-06 45.1 8.7 43 122-167 201-243 (278)
81 3co5_A Putative two-component 94.3 0.017 5.9E-07 46.0 2.1 17 2-18 36-52 (143)
82 1sky_E F1-ATPase, F1-ATP synth 94.2 0.13 4.5E-06 49.3 8.2 32 2-33 160-191 (473)
83 2dhr_A FTSH; AAA+ protein, hex 93.9 0.27 9.1E-06 47.7 10.0 60 105-167 170-234 (499)
84 3hr8_A Protein RECA; alpha and 93.5 0.095 3.2E-06 48.6 5.7 77 1-87 69-150 (356)
85 1xp8_A RECA protein, recombina 93.4 0.065 2.2E-06 49.9 4.6 75 2-86 83-162 (366)
86 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.074 2.5E-06 45.4 4.7 17 2-18 32-48 (235)
87 3ice_A Transcription terminati 93.2 0.056 1.9E-06 50.5 3.7 32 2-33 183-215 (422)
88 3io5_A Recombination and repai 93.2 0.067 2.3E-06 48.6 4.1 28 1-28 36-65 (333)
89 1qvr_A CLPB protein; coiled co 93.2 0.18 6.2E-06 52.5 7.9 18 1-18 596-613 (854)
90 1r6b_X CLPA protein; AAA+, N-t 93.1 0.087 3E-06 54.1 5.4 17 1-17 496-512 (758)
91 2qgz_A Helicase loader, putati 92.8 0.059 2E-06 48.9 3.3 17 2-18 161-177 (308)
92 1jr3_D DNA polymerase III, del 92.8 1.1 3.7E-05 40.9 12.0 98 75-176 75-183 (343)
93 3bh0_A DNAB-like replicative h 92.8 0.32 1.1E-05 44.1 8.2 43 2-51 77-119 (315)
94 1v5w_A DMC1, meiotic recombina 92.8 0.23 7.8E-06 45.7 7.2 16 2-17 131-146 (343)
95 2ck3_D ATP synthase subunit be 92.5 0.4 1.4E-05 45.9 8.5 45 2-49 162-206 (482)
96 4a74_A DNA repair and recombin 92.4 0.11 3.7E-06 44.4 4.3 16 1-16 33-48 (231)
97 1n0w_A DNA repair protein RAD5 92.3 0.28 9.4E-06 42.2 6.8 16 1-16 32-47 (243)
98 2b8t_A Thymidine kinase; deoxy 92.3 0.022 7.6E-07 49.2 -0.3 102 2-114 21-126 (223)
99 2z43_A DNA repair and recombin 92.2 0.21 7.3E-06 45.5 6.1 16 2-17 116-131 (324)
100 3lw7_A Adenylate kinase relate 92.1 0.42 1.5E-05 38.4 7.4 13 1-13 9-21 (179)
101 1u94_A RECA protein, recombina 91.9 0.15 5.2E-06 47.2 4.8 27 2-28 72-98 (356)
102 1qhx_A CPT, protein (chloramph 91.8 0.071 2.4E-06 43.7 2.2 18 1-18 11-28 (178)
103 1fx0_B ATP synthase beta chain 91.7 0.57 2E-05 45.0 8.6 44 2-49 174-218 (498)
104 4gp7_A Metallophosphoesterase; 91.7 0.2 6.9E-06 40.9 4.9 19 68-86 93-111 (171)
105 2zr9_A Protein RECA, recombina 91.4 0.18 6.2E-06 46.6 4.8 27 2-28 70-96 (349)
106 1ypw_A Transitional endoplasmi 91.3 0.55 1.9E-05 48.5 8.7 119 1-144 246-385 (806)
107 1q57_A DNA primase/helicase; d 90.9 0.5 1.7E-05 45.9 7.7 43 2-51 251-294 (503)
108 2i1q_A DNA repair and recombin 90.7 0.37 1.3E-05 43.8 6.1 15 2-16 107-121 (322)
109 3jvv_A Twitching mobility prot 90.6 0.33 1.1E-05 44.9 5.8 51 64-117 184-234 (356)
110 3l0o_A Transcription terminati 90.6 0.088 3E-06 49.1 1.7 32 2-33 184-216 (427)
111 3cf2_A TER ATPase, transitiona 90.4 0.38 1.3E-05 49.4 6.3 20 1-20 519-538 (806)
112 2q6t_A DNAB replication FORK h 90.0 0.78 2.7E-05 43.7 8.0 44 2-52 209-253 (444)
113 4a1f_A DNAB helicase, replicat 89.9 0.72 2.5E-05 42.2 7.3 43 2-51 55-97 (338)
114 2fz4_A DNA repair protein RAD2 89.9 1.6 5.4E-05 37.6 9.2 16 2-17 117-132 (237)
115 3kb2_A SPBC2 prophage-derived 89.8 0.14 4.7E-06 41.5 2.2 18 1-18 9-26 (173)
116 1vma_A Cell division protein F 89.7 0.76 2.6E-05 41.5 7.3 27 1-28 112-138 (306)
117 3vr4_D V-type sodium ATPase su 89.7 0.62 2.1E-05 44.4 6.8 45 2-49 160-207 (465)
118 2eyu_A Twitching motility prot 89.7 0.4 1.4E-05 42.2 5.3 102 2-116 34-135 (261)
119 2r6a_A DNAB helicase, replicat 89.3 0.99 3.4E-05 43.1 8.1 41 2-49 212-253 (454)
120 3trf_A Shikimate kinase, SK; a 89.2 0.16 5.6E-06 41.8 2.2 18 1-18 13-30 (185)
121 3t61_A Gluconokinase; PSI-biol 89.2 0.96 3.3E-05 37.7 7.1 17 1-17 26-42 (202)
122 3sr0_A Adenylate kinase; phosp 88.8 0.82 2.8E-05 38.6 6.4 17 1-17 8-24 (206)
123 2pt7_A CAG-ALFA; ATPase, prote 88.8 0.62 2.1E-05 42.6 6.0 97 2-115 180-276 (330)
124 3vaa_A Shikimate kinase, SK; s 88.7 0.19 6.4E-06 42.1 2.3 17 1-17 33-49 (199)
125 4eun_A Thermoresistant glucoki 88.5 1.8 6.3E-05 35.9 8.4 17 1-17 37-53 (200)
126 4dzz_A Plasmid partitioning pr 88.5 0.3 1E-05 40.8 3.5 19 2-20 11-29 (206)
127 3bgw_A DNAB-like replicative h 88.2 0.78 2.7E-05 43.8 6.5 42 2-50 206-247 (444)
128 1ly1_A Polynucleotide kinase; 88.0 0.21 7E-06 40.8 2.0 15 1-15 10-24 (181)
129 1fx0_A ATP synthase alpha chai 87.9 1.1 3.6E-05 43.3 7.1 30 2-33 172-202 (507)
130 2c61_A A-type ATP synthase non 87.9 0.92 3.1E-05 43.3 6.7 45 2-49 161-208 (469)
131 3hjn_A DTMP kinase, thymidylat 87.9 0.56 1.9E-05 39.3 4.7 20 2-21 9-28 (197)
132 1via_A Shikimate kinase; struc 87.8 0.23 7.7E-06 40.6 2.2 18 1-18 12-29 (175)
133 3oaa_A ATP synthase subunit al 87.5 1.3 4.3E-05 42.7 7.3 78 2-87 171-265 (513)
134 3gqb_B V-type ATP synthase bet 87.4 1.1 3.9E-05 42.5 6.9 17 2-18 156-172 (464)
135 1nks_A Adenylate kinase; therm 87.3 0.24 8.4E-06 40.8 2.1 19 1-19 9-27 (194)
136 2jaq_A Deoxyguanosine kinase; 87.2 0.25 8.6E-06 41.1 2.2 18 1-18 8-25 (205)
137 3e1s_A Exodeoxyribonuclease V, 87.2 0.8 2.8E-05 45.2 6.1 32 78-112 281-314 (574)
138 2r8r_A Sensor protein; KDPD, P 87.1 0.32 1.1E-05 41.8 2.7 20 1-20 14-33 (228)
139 2ck3_A ATP synthase subunit al 87.1 1.1 3.7E-05 43.2 6.7 44 2-48 171-221 (510)
140 3iij_A Coilin-interacting nucl 87.0 0.26 9E-06 40.3 2.1 17 1-17 19-35 (180)
141 1kht_A Adenylate kinase; phosp 86.7 0.28 9.4E-06 40.4 2.1 18 1-18 11-28 (192)
142 2rhm_A Putative kinase; P-loop 86.7 0.29 9.9E-06 40.4 2.2 17 1-17 13-29 (193)
143 3cwq_A Para family chromosome 86.5 0.39 1.3E-05 40.6 3.0 28 2-31 10-37 (209)
144 1kag_A SKI, shikimate kinase I 86.4 0.3 1E-05 39.6 2.2 18 1-18 12-29 (173)
145 1zp6_A Hypothetical protein AT 86.4 0.3 1E-05 40.3 2.1 16 1-16 17-32 (191)
146 1zuh_A Shikimate kinase; alpha 86.2 0.33 1.1E-05 39.2 2.3 18 1-18 15-32 (168)
147 3ea0_A ATPase, para family; al 86.2 0.45 1.5E-05 41.0 3.3 19 2-20 14-32 (245)
148 2qe7_A ATP synthase subunit al 86.0 0.77 2.6E-05 44.2 5.0 42 2-48 171-213 (502)
149 1pzn_A RAD51, DNA repair and r 85.5 0.89 3.1E-05 41.8 5.1 16 2-17 140-155 (349)
150 3upu_A ATP-dependent DNA helic 85.4 0.75 2.6E-05 44.0 4.7 20 1-20 53-72 (459)
151 2ewv_A Twitching motility prot 85.3 0.99 3.4E-05 41.9 5.4 49 64-115 197-245 (372)
152 2r9v_A ATP synthase subunit al 85.3 1.5 5.3E-05 42.2 6.7 42 2-48 184-226 (515)
153 2ze6_A Isopentenyl transferase 85.3 0.37 1.3E-05 42.2 2.3 18 1-18 9-26 (253)
154 1e6c_A Shikimate kinase; phosp 85.1 0.38 1.3E-05 38.9 2.1 18 1-18 10-27 (173)
155 2px0_A Flagellar biosynthesis 85.1 1.6 5.6E-05 39.0 6.5 18 1-18 113-130 (296)
156 3uie_A Adenylyl-sulfate kinase 85.1 0.36 1.2E-05 40.4 2.1 18 1-18 33-50 (200)
157 2vli_A Antibiotic resistance p 85.0 0.25 8.5E-06 40.4 1.0 18 1-18 13-30 (183)
158 2iyv_A Shikimate kinase, SK; t 85.0 0.4 1.4E-05 39.3 2.2 18 1-18 10-27 (184)
159 2pt5_A Shikimate kinase, SK; a 84.8 0.42 1.5E-05 38.4 2.3 18 1-18 8-25 (168)
160 2yvu_A Probable adenylyl-sulfa 84.7 0.53 1.8E-05 38.7 2.9 19 1-19 21-39 (186)
161 3llm_A ATP-dependent RNA helic 84.6 2.3 8E-05 36.3 7.1 23 64-87 165-187 (235)
162 3cm0_A Adenylate kinase; ATP-b 84.6 0.41 1.4E-05 39.3 2.2 17 1-17 12-28 (186)
163 1kgd_A CASK, peripheral plasma 84.4 0.43 1.5E-05 39.2 2.2 18 1-18 13-30 (180)
164 2plr_A DTMP kinase, probable t 84.3 0.42 1.5E-05 40.0 2.1 20 1-20 12-31 (213)
165 1cp2_A CP2, nitrogenase iron p 84.2 0.57 2E-05 41.0 3.0 19 2-20 10-28 (269)
166 1ex7_A Guanylate kinase; subst 84.0 0.44 1.5E-05 39.7 2.0 22 1-22 9-30 (186)
167 2c95_A Adenylate kinase 1; tra 83.9 0.46 1.6E-05 39.3 2.2 17 1-17 17-33 (196)
168 3lda_A DNA repair protein RAD5 83.8 2.5 8.7E-05 39.6 7.4 14 2-15 187-200 (400)
169 3kjh_A CO dehydrogenase/acetyl 83.8 0.49 1.7E-05 40.7 2.4 19 2-20 9-27 (254)
170 2ffh_A Protein (FFH); SRP54, s 83.6 2.1 7.2E-05 40.5 6.8 20 1-20 106-125 (425)
171 2qor_A Guanylate kinase; phosp 83.5 0.46 1.6E-05 39.8 2.0 18 1-18 20-37 (204)
172 1knq_A Gluconate kinase; ALFA/ 83.4 0.46 1.6E-05 38.6 2.0 17 1-17 16-32 (175)
173 1aky_A Adenylate kinase; ATP:A 83.2 0.5 1.7E-05 40.1 2.2 18 1-18 12-29 (220)
174 2cdn_A Adenylate kinase; phosp 83.2 0.53 1.8E-05 39.3 2.3 17 1-17 28-44 (201)
175 1zak_A Adenylate kinase; ATP:A 83.1 0.49 1.7E-05 40.2 2.1 18 1-18 13-30 (222)
176 1tev_A UMP-CMP kinase; ploop, 83.1 0.49 1.7E-05 38.9 2.0 17 1-17 11-27 (196)
177 2bwj_A Adenylate kinase 5; pho 82.9 0.52 1.8E-05 39.0 2.1 18 1-18 20-37 (199)
178 1g3q_A MIND ATPase, cell divis 82.8 0.65 2.2E-05 39.7 2.7 19 2-20 12-30 (237)
179 3ch4_B Pmkase, phosphomevalona 82.7 2.8 9.7E-05 35.2 6.6 19 79-97 105-123 (202)
180 1ls1_A Signal recognition part 82.7 2.4 8.1E-05 37.9 6.5 27 1-28 106-132 (295)
181 2bdt_A BH3686; alpha-beta prot 82.7 0.51 1.8E-05 38.9 2.0 15 1-15 10-24 (189)
182 2zts_A Putative uncharacterize 82.6 0.88 3E-05 39.0 3.6 15 2-16 39-53 (251)
183 3a4m_A L-seryl-tRNA(SEC) kinas 82.5 0.52 1.8E-05 41.4 2.0 18 1-18 12-29 (260)
184 1zd8_A GTP:AMP phosphotransfer 82.4 0.55 1.9E-05 40.1 2.1 17 1-17 15-31 (227)
185 3cmu_A Protein RECA, recombina 82.2 1 3.4E-05 50.8 4.5 76 1-86 1435-1515(2050)
186 3k9g_A PF-32 protein; ssgcid, 82.2 0.78 2.7E-05 40.1 3.1 17 2-18 37-53 (267)
187 1y63_A LMAJ004144AAA protein; 82.2 0.55 1.9E-05 38.7 2.0 16 1-16 18-33 (184)
188 1j8m_F SRP54, signal recogniti 82.1 2.5 8.6E-05 37.8 6.5 19 1-19 106-124 (297)
189 2xxa_A Signal recognition part 82.0 3.8 0.00013 38.8 7.9 20 1-20 108-127 (433)
190 2pbr_A DTMP kinase, thymidylat 82.0 0.58 2E-05 38.5 2.1 18 1-18 8-25 (195)
191 2ph1_A Nucleotide-binding prot 81.8 0.71 2.4E-05 40.4 2.7 19 2-20 28-46 (262)
192 3q9l_A Septum site-determining 81.8 0.73 2.5E-05 40.0 2.7 19 2-20 12-30 (260)
193 3fb4_A Adenylate kinase; psych 81.8 0.59 2E-05 39.4 2.1 17 1-17 8-24 (216)
194 2afh_E Nitrogenase iron protei 81.7 0.72 2.5E-05 41.0 2.7 19 2-20 11-29 (289)
195 1nn5_A Similar to deoxythymidy 81.7 0.74 2.5E-05 38.6 2.6 19 1-19 17-35 (215)
196 1yrb_A ATP(GTP)binding protein 81.6 0.57 1.9E-05 40.8 1.9 17 2-18 23-39 (262)
197 2j9r_A Thymidine kinase; TK1, 81.6 1.2 4.2E-05 37.8 3.9 99 3-115 38-139 (214)
198 2wwf_A Thymidilate kinase, put 81.5 0.57 1.9E-05 39.3 1.8 19 1-19 18-36 (212)
199 3end_A Light-independent proto 81.3 0.76 2.6E-05 41.2 2.7 19 2-20 50-68 (307)
200 3tau_A Guanylate kinase, GMP k 81.2 0.66 2.3E-05 39.1 2.2 19 1-19 16-34 (208)
201 1gvn_B Zeta; postsegregational 81.2 0.57 1.9E-05 41.9 1.8 17 1-17 41-57 (287)
202 3zvl_A Bifunctional polynucleo 81.0 4.1 0.00014 38.3 7.8 17 1-17 266-282 (416)
203 1qf9_A UMP/CMP kinase, protein 81.0 0.67 2.3E-05 38.0 2.1 17 1-17 14-30 (194)
204 3dl0_A Adenylate kinase; phosp 81.0 0.64 2.2E-05 39.2 2.0 17 1-17 8-24 (216)
205 3zq6_A Putative arsenical pump 80.9 1.1 3.7E-05 40.7 3.6 19 2-20 23-41 (324)
206 3dm5_A SRP54, signal recogniti 80.9 2.7 9.4E-05 39.9 6.5 20 1-20 108-127 (443)
207 3a00_A Guanylate kinase, GMP k 80.7 0.9 3.1E-05 37.4 2.8 21 1-21 9-29 (186)
208 3be4_A Adenylate kinase; malar 80.5 0.72 2.5E-05 39.1 2.2 17 1-17 13-29 (217)
209 1ukz_A Uridylate kinase; trans 80.5 0.69 2.3E-05 38.5 2.0 17 1-17 23-39 (203)
210 1xjc_A MOBB protein homolog; s 80.4 0.67 2.3E-05 37.9 1.8 25 2-26 13-38 (169)
211 1ak2_A Adenylate kinase isoenz 80.4 0.72 2.5E-05 39.6 2.1 18 1-18 24-41 (233)
212 1hyq_A MIND, cell division inh 80.3 0.88 3E-05 39.6 2.7 19 2-20 12-30 (263)
213 1e4v_A Adenylate kinase; trans 80.2 0.72 2.5E-05 38.9 2.1 17 1-17 8-24 (214)
214 2if2_A Dephospho-COA kinase; a 80.1 0.72 2.5E-05 38.5 2.0 15 1-15 9-23 (204)
215 3nwj_A ATSK2; P loop, shikimat 80.1 0.73 2.5E-05 40.3 2.1 18 1-18 56-73 (250)
216 2oze_A ORF delta'; para, walke 80.1 0.88 3E-05 40.5 2.7 18 2-19 46-63 (298)
217 2z0h_A DTMP kinase, thymidylat 80.1 0.71 2.4E-05 38.1 2.0 18 1-18 8-25 (197)
218 2v54_A DTMP kinase, thymidylat 80.0 0.74 2.5E-05 38.3 2.0 17 1-17 12-28 (204)
219 2j41_A Guanylate kinase; GMP, 80.0 0.72 2.5E-05 38.4 2.0 17 1-17 14-30 (207)
220 3kl4_A SRP54, signal recogniti 80.0 2.7 9.3E-05 39.8 6.1 19 1-19 105-123 (433)
221 3tr0_A Guanylate kinase, GMP k 79.6 0.77 2.6E-05 38.2 2.0 17 1-17 15-31 (205)
222 2xb4_A Adenylate kinase; ATP-b 79.6 0.79 2.7E-05 39.1 2.1 17 1-17 8-24 (223)
223 2dr3_A UPF0273 protein PH0284; 79.5 1 3.5E-05 38.5 2.9 28 1-28 31-58 (247)
224 4hlc_A DTMP kinase, thymidylat 79.4 1.9 6.4E-05 36.3 4.4 21 2-22 11-31 (205)
225 3ug7_A Arsenical pump-driving 79.4 1.2 3.9E-05 41.1 3.3 18 2-19 35-52 (349)
226 2xj4_A MIPZ; replication, cell 79.4 0.95 3.3E-05 40.2 2.7 19 2-20 14-32 (286)
227 1byi_A Dethiobiotin synthase; 79.4 0.69 2.4E-05 39.2 1.7 19 2-20 11-29 (224)
228 4edh_A DTMP kinase, thymidylat 79.1 2 6.8E-05 36.4 4.5 20 1-20 14-33 (213)
229 1cke_A CK, MSSA, protein (cyti 79.1 0.81 2.8E-05 38.8 2.0 17 1-17 13-29 (227)
230 1wcv_1 SOJ, segregation protei 79.0 0.78 2.7E-05 40.0 1.9 19 2-20 16-34 (257)
231 1ye8_A Protein THEP1, hypothet 79.0 0.86 3E-05 37.5 2.1 64 73-138 96-170 (178)
232 3c8u_A Fructokinase; YP_612366 78.9 0.74 2.5E-05 38.7 1.7 18 1-18 30-47 (208)
233 2pez_A Bifunctional 3'-phospho 78.8 0.86 2.9E-05 37.1 2.0 18 1-18 13-30 (179)
234 1m7g_A Adenylylsulfate kinase; 78.7 0.86 2.9E-05 38.4 2.1 18 1-18 33-50 (211)
235 2bbw_A Adenylate kinase 4, AK4 78.6 0.86 2.9E-05 39.4 2.1 17 1-17 35-51 (246)
236 1jjv_A Dephospho-COA kinase; P 78.6 0.88 3E-05 38.0 2.1 15 1-15 10-24 (206)
237 2qt1_A Nicotinamide riboside k 78.3 0.91 3.1E-05 38.0 2.1 17 1-17 29-45 (207)
238 4e22_A Cytidylate kinase; P-lo 77.8 0.93 3.2E-05 39.5 2.1 18 1-18 35-52 (252)
239 2p5t_B PEZT; postsegregational 77.7 0.67 2.3E-05 40.4 1.1 18 1-18 40-57 (253)
240 3tlx_A Adenylate kinase 2; str 77.4 0.99 3.4E-05 39.1 2.1 17 1-17 37-53 (243)
241 1uf9_A TT1252 protein; P-loop, 77.4 0.98 3.4E-05 37.4 2.0 16 1-16 16-31 (203)
242 4eaq_A DTMP kinase, thymidylat 77.3 2.1 7.2E-05 36.7 4.1 19 1-19 34-52 (229)
243 3fkq_A NTRC-like two-domain pr 77.3 1.1 3.7E-05 41.6 2.5 19 2-20 153-171 (373)
244 3ez2_A Plasmid partition prote 77.3 1.2 4.1E-05 41.6 2.8 17 2-18 118-134 (398)
245 1um8_A ATP-dependent CLP prote 76.9 1.1 3.6E-05 41.6 2.3 18 1-18 80-97 (376)
246 3fwy_A Light-independent proto 76.9 0.96 3.3E-05 41.0 1.9 18 2-19 57-74 (314)
247 1gtv_A TMK, thymidylate kinase 76.9 0.55 1.9E-05 39.4 0.3 17 2-18 9-25 (214)
248 3hws_A ATP-dependent CLP prote 76.8 1.1 3.7E-05 41.3 2.3 18 1-18 59-76 (363)
249 3ney_A 55 kDa erythrocyte memb 76.8 1.1 3.9E-05 37.5 2.2 18 1-18 27-44 (197)
250 3asz_A Uridine kinase; cytidin 76.6 1 3.6E-05 37.7 2.0 17 2-18 15-31 (211)
251 3mfy_A V-type ATP synthase alp 76.5 3 0.0001 40.7 5.3 40 2-47 236-275 (588)
252 1ltq_A Polynucleotide kinase; 76.5 1 3.5E-05 40.1 2.0 16 1-16 10-25 (301)
253 3r20_A Cytidylate kinase; stru 76.0 1.2 4E-05 38.5 2.1 18 1-18 17-34 (233)
254 3iqw_A Tail-anchored protein t 76.0 1.6 5.5E-05 39.8 3.2 19 2-20 25-43 (334)
255 1tue_A Replication protein E1; 75.8 0.96 3.3E-05 38.3 1.5 19 1-19 66-84 (212)
256 3cmw_A Protein RECA, recombina 75.7 2.2 7.6E-05 47.3 4.7 76 2-87 392-472 (1706)
257 3e70_C DPA, signal recognition 75.3 5.7 0.0002 36.0 6.7 18 1-18 137-154 (328)
258 4tmk_A Protein (thymidylate ki 75.3 2.7 9.3E-05 35.6 4.2 20 1-20 11-30 (213)
259 1lvg_A Guanylate kinase, GMP k 75.2 1.2 4.2E-05 37.1 2.0 17 1-17 12-28 (198)
260 3pg5_A Uncharacterized protein 75.2 1.1 3.9E-05 41.3 1.9 18 2-19 11-28 (361)
261 1rz3_A Hypothetical protein rb 75.1 1.2 4.2E-05 37.1 2.0 18 1-18 30-47 (201)
262 3v9p_A DTMP kinase, thymidylat 74.9 2 6.9E-05 36.8 3.4 20 1-20 33-52 (227)
263 2ehv_A Hypothetical protein PH 74.6 1.3 4.4E-05 38.0 2.1 15 1-15 38-52 (251)
264 3ld9_A DTMP kinase, thymidylat 74.6 2.7 9.2E-05 35.9 4.0 19 1-19 29-47 (223)
265 3ake_A Cytidylate kinase; CMP 74.5 1.4 4.8E-05 36.6 2.2 18 1-18 10-27 (208)
266 2grj_A Dephospho-COA kinase; T 74.4 1.3 4.5E-05 36.9 2.0 16 1-16 20-35 (192)
267 1vht_A Dephospho-COA kinase; s 74.2 1.3 4.5E-05 37.3 2.0 15 1-15 12-26 (218)
268 1znw_A Guanylate kinase, GMP k 74.2 1.3 4.6E-05 37.0 2.0 17 1-17 28-44 (207)
269 3cmu_A Protein RECA, recombina 73.8 4.7 0.00016 45.6 6.6 75 2-86 392-471 (2050)
270 1uj2_A Uridine-cytidine kinase 73.8 1.3 4.6E-05 38.4 2.0 18 1-18 30-47 (252)
271 1cr0_A DNA primase/helicase; R 73.7 3.8 0.00013 36.3 5.0 18 2-19 44-61 (296)
272 1w36_D RECD, exodeoxyribonucle 73.6 9 0.00031 37.9 8.2 33 79-114 265-299 (608)
273 1htw_A HI0065; nucleotide-bind 73.5 1.4 4.7E-05 35.5 1.8 16 2-17 42-57 (158)
274 3lv8_A DTMP kinase, thymidylat 73.5 2.9 9.9E-05 36.0 4.0 19 1-19 35-53 (236)
275 2ocp_A DGK, deoxyguanosine kin 73.5 1.5 5E-05 37.8 2.1 18 1-18 10-27 (241)
276 2ga8_A Hypothetical 39.9 kDa p 73.4 1.1 3.8E-05 41.2 1.4 21 1-21 32-52 (359)
277 3a8t_A Adenylate isopentenyltr 73.3 1.4 4.7E-05 40.3 2.0 18 1-18 48-65 (339)
278 2r44_A Uncharacterized protein 73.1 1.2 4.1E-05 40.4 1.5 22 125-146 179-200 (331)
279 1np6_A Molybdopterin-guanine d 72.7 1.5 5E-05 36.0 1.8 17 2-18 15-31 (174)
280 2woo_A ATPase GET3; tail-ancho 72.5 2.1 7.2E-05 38.9 3.1 19 2-20 28-46 (329)
281 1z6g_A Guanylate kinase; struc 72.4 1.6 5.3E-05 37.1 2.0 17 1-17 31-47 (218)
282 3crm_A TRNA delta(2)-isopenten 72.3 1.5 5E-05 39.9 1.9 18 1-18 13-30 (323)
283 1g41_A Heat shock protein HSLU 72.2 1.6 5.6E-05 41.4 2.3 20 1-20 58-77 (444)
284 1rj9_A FTSY, signal recognitio 72.2 2.2 7.6E-05 38.3 3.1 18 1-18 110-127 (304)
285 2v3c_C SRP54, signal recogniti 72.1 2.1 7.3E-05 40.5 3.1 20 1-20 107-126 (432)
286 3vkw_A Replicase large subunit 72.0 11 0.00036 35.8 7.8 15 1-15 169-183 (446)
287 2hf9_A Probable hydrogenase ni 71.9 1.5 5.2E-05 36.9 1.9 17 2-18 47-63 (226)
288 3io3_A DEHA2D07832P; chaperone 71.9 2.2 7.6E-05 39.1 3.1 17 2-18 27-43 (348)
289 2wsm_A Hydrogenase expression/ 71.7 2.1 7.1E-05 35.9 2.7 19 2-20 39-57 (221)
290 3vr4_A V-type sodium ATPase ca 71.7 4.4 0.00015 39.7 5.1 16 2-17 241-256 (600)
291 1g8f_A Sulfate adenylyltransfe 71.4 1.6 5.6E-05 42.3 2.1 19 1-19 403-421 (511)
292 1odf_A YGR205W, hypothetical 3 71.4 1.7 5.7E-05 38.9 2.0 17 2-18 40-56 (290)
293 2jeo_A Uridine-cytidine kinase 71.3 1.7 5.7E-05 37.6 2.0 16 2-17 34-49 (245)
294 1nlf_A Regulatory protein REPA 70.7 1.8 6E-05 38.2 2.0 18 1-18 38-55 (279)
295 3cmw_A Protein RECA, recombina 70.5 3.2 0.00011 46.1 4.3 75 2-86 1440-1519(1706)
296 3aez_A Pantothenate kinase; tr 70.4 1.8 6.3E-05 39.0 2.1 17 2-18 99-115 (312)
297 2i3b_A HCR-ntpase, human cance 70.3 2 6.7E-05 35.7 2.1 18 1-18 9-26 (189)
298 1s96_A Guanylate kinase, GMP k 70.1 1.9 6.7E-05 36.6 2.1 18 1-18 24-41 (219)
299 2iut_A DNA translocase FTSK; n 70.0 15 0.0005 36.0 8.5 63 77-141 344-420 (574)
300 2qmh_A HPR kinase/phosphorylas 70.0 1.8 6.3E-05 36.3 1.8 18 1-18 42-59 (205)
301 3d3q_A TRNA delta(2)-isopenten 70.0 1.9 6.4E-05 39.5 2.1 18 1-18 15-32 (340)
302 2ce2_X GTPase HRAS; signaling 69.9 1.9 6.4E-05 33.8 1.9 14 2-15 12-25 (166)
303 3ez9_A Para; DNA binding, wing 69.9 1.5 5.1E-05 41.1 1.4 17 2-18 121-137 (403)
304 1p5z_B DCK, deoxycytidine kina 69.6 1.2 4.2E-05 38.8 0.8 18 1-18 32-49 (263)
305 2woj_A ATPase GET3; tail-ancho 69.6 2.7 9.1E-05 38.7 3.1 17 2-18 27-43 (354)
306 2f6r_A COA synthase, bifunctio 69.5 2 6.8E-05 38.1 2.1 15 1-15 83-97 (281)
307 2j37_W Signal recognition part 69.3 11 0.00037 36.4 7.4 18 2-19 110-127 (504)
308 3umf_A Adenylate kinase; rossm 69.3 2.1 7.1E-05 36.5 2.1 17 1-17 37-53 (217)
309 2zej_A Dardarin, leucine-rich 69.1 1.9 6.4E-05 35.1 1.7 14 2-15 11-24 (184)
310 3tmk_A Thymidylate kinase; pho 68.6 5.6 0.00019 33.7 4.7 19 1-19 13-31 (216)
311 1tf7_A KAIC; homohexamer, hexa 68.5 4.7 0.00016 39.2 4.7 18 1-18 289-306 (525)
312 3b9q_A Chloroplast SRP recepto 68.2 2.8 9.6E-05 37.6 2.8 18 1-18 108-125 (302)
313 3gmt_A Adenylate kinase; ssgci 68.1 2.3 7.8E-05 36.5 2.1 17 1-17 16-32 (230)
314 2orw_A Thymidine kinase; TMTK, 68.1 2.7 9.2E-05 34.6 2.5 37 75-114 75-113 (184)
315 1p6x_A Thymidine kinase; P-loo 67.9 2.4 8.3E-05 38.6 2.4 19 2-20 16-34 (334)
316 2dyk_A GTP-binding protein; GT 67.7 2.2 7.6E-05 33.3 1.9 14 2-15 10-23 (161)
317 2axn_A 6-phosphofructo-2-kinas 67.6 2.8 9.5E-05 40.8 2.9 18 1-18 43-60 (520)
318 2wji_A Ferrous iron transport 67.4 2.3 8E-05 33.8 2.0 14 2-15 12-25 (165)
319 1oix_A RAS-related protein RAB 67.4 2.3 8E-05 34.8 2.0 14 2-15 38-51 (191)
320 3tqf_A HPR(Ser) kinase; transf 66.8 2.5 8.7E-05 34.6 2.0 16 1-16 24-39 (181)
321 3fdi_A Uncharacterized protein 66.8 2.7 9.2E-05 35.1 2.3 20 1-20 14-33 (201)
322 3gqb_A V-type ATP synthase alp 66.8 7.1 0.00024 38.0 5.4 16 2-17 230-245 (578)
323 3bfv_A CAPA1, CAPB2, membrane 66.6 3.1 0.00011 36.6 2.7 19 2-20 92-110 (271)
324 1bif_A 6-phosphofructo-2-kinas 66.5 3 0.0001 39.9 2.9 18 1-18 47-64 (469)
325 3exa_A TRNA delta(2)-isopenten 66.5 2.5 8.7E-05 38.2 2.1 17 1-17 11-27 (322)
326 3con_A GTPase NRAS; structural 66.3 2.4 8.3E-05 34.4 1.9 14 2-15 30-43 (190)
327 1zu4_A FTSY; GTPase, signal re 66.1 3.1 0.00011 37.6 2.7 26 2-28 114-139 (320)
328 1e2k_A Thymidine kinase; trans 66.1 2.2 7.6E-05 38.8 1.7 18 2-19 13-30 (331)
329 2f1r_A Molybdopterin-guanine d 65.9 1.5 5.1E-05 35.8 0.5 17 2-18 11-27 (171)
330 2pcj_A ABC transporter, lipopr 65.9 2.5 8.4E-05 36.1 1.9 47 69-117 151-203 (224)
331 3tqc_A Pantothenate kinase; bi 65.8 2.5 8.6E-05 38.3 2.0 17 2-18 101-117 (321)
332 3foz_A TRNA delta(2)-isopenten 65.7 2.6 8.9E-05 38.0 2.0 17 1-17 18-34 (316)
333 2qi9_C Vitamin B12 import ATP- 65.7 3.1 0.00011 36.2 2.5 16 2-17 35-50 (249)
334 2f9l_A RAB11B, member RAS onco 65.5 2.5 8.7E-05 34.8 1.9 14 2-15 14-27 (199)
335 3la6_A Tyrosine-protein kinase 65.5 3.7 0.00013 36.5 3.0 19 2-20 102-120 (286)
336 3tif_A Uncharacterized ABC tra 65.3 2.5 8.5E-05 36.4 1.8 49 69-118 156-210 (235)
337 2wjg_A FEOB, ferrous iron tran 65.2 2.8 9.6E-05 33.9 2.1 14 2-15 16-29 (188)
338 2onk_A Molybdate/tungstate ABC 65.2 2.8 9.4E-05 36.2 2.1 49 68-117 136-190 (240)
339 2orv_A Thymidine kinase; TP4A 65.0 4.4 0.00015 34.8 3.3 35 78-114 92-126 (234)
340 1z2a_A RAS-related protein RAB 64.9 2.7 9.3E-05 33.1 1.9 14 2-15 14-27 (168)
341 2gxq_A Heat resistant RNA depe 64.8 17 0.00059 29.6 7.0 12 2-13 47-58 (207)
342 3lnc_A Guanylate kinase, GMP k 64.8 1.8 6.1E-05 36.9 0.8 17 1-17 35-52 (231)
343 3cio_A ETK, tyrosine-protein k 64.5 3.5 0.00012 36.8 2.7 19 2-20 114-132 (299)
344 3igf_A ALL4481 protein; two-do 64.4 2.4 8.1E-05 39.4 1.6 19 2-20 11-29 (374)
345 1sq5_A Pantothenate kinase; P- 64.4 2.8 9.5E-05 37.6 2.0 18 1-18 88-105 (308)
346 2vp4_A Deoxynucleoside kinase; 64.2 2.1 7E-05 36.6 1.1 16 1-16 28-43 (230)
347 3b85_A Phosphate starvation-in 63.9 2.3 7.8E-05 35.9 1.3 40 73-116 119-160 (208)
348 3nbx_X ATPase RAVA; AAA+ ATPas 63.8 2.5 8.7E-05 40.8 1.7 18 1-18 49-66 (500)
349 2nzj_A GTP-binding protein REM 63.7 3 0.0001 33.1 2.0 14 2-15 13-26 (175)
350 2h92_A Cytidylate kinase; ross 63.4 3.2 0.00011 34.8 2.2 17 1-17 11-27 (219)
351 1g8p_A Magnesium-chelatase 38 63.4 1.8 6E-05 39.3 0.5 17 2-18 54-70 (350)
352 2og2_A Putative signal recogni 63.2 3.9 0.00014 37.6 2.8 18 1-18 165-182 (359)
353 2erx_A GTP-binding protein DI- 63.1 3.2 0.00011 32.7 2.0 14 2-15 12-25 (172)
354 1b0u_A Histidine permease; ABC 63.0 2.9 0.0001 36.6 1.9 48 69-118 164-217 (262)
355 1of1_A Thymidine kinase; trans 62.9 3 0.0001 38.7 1.9 18 2-19 58-75 (376)
356 1u8z_A RAS-related protein RAL 62.9 3.1 0.00011 32.6 1.9 14 2-15 13-26 (168)
357 4g1u_C Hemin import ATP-bindin 62.8 3 0.0001 36.6 1.9 15 1-15 45-59 (266)
358 1sgw_A Putative ABC transporte 62.6 3.1 0.00011 35.2 1.9 14 2-15 44-57 (214)
359 1q3t_A Cytidylate kinase; nucl 62.5 3.1 0.00011 35.5 1.9 17 1-17 24-40 (236)
360 2d2e_A SUFC protein; ABC-ATPas 62.5 3.3 0.00011 36.0 2.0 49 69-119 154-208 (250)
361 3gfo_A Cobalt import ATP-bindi 62.4 3.1 0.0001 36.8 1.9 50 68-118 153-208 (275)
362 2cbz_A Multidrug resistance-as 62.3 3.1 0.0001 35.8 1.8 50 69-118 138-193 (237)
363 1x6v_B Bifunctional 3'-phospho 62.1 3.1 0.00011 41.3 2.1 17 1-17 60-76 (630)
364 3q85_A GTP-binding protein REM 61.9 3.5 0.00012 32.5 2.1 14 2-15 11-24 (169)
365 1ji0_A ABC transporter; ATP bi 61.8 3.2 0.00011 35.8 1.8 47 69-117 150-202 (240)
366 1m8p_A Sulfate adenylyltransfe 61.7 3.2 0.00011 40.9 2.1 18 1-18 404-421 (573)
367 2olj_A Amino acid ABC transpor 61.7 3.2 0.00011 36.4 1.9 48 69-118 170-223 (263)
368 1ypw_A Transitional endoplasmi 61.7 3.5 0.00012 42.5 2.4 20 1-20 519-538 (806)
369 2zu0_C Probable ATP-dependent 61.5 3.5 0.00012 36.2 2.1 49 69-119 175-229 (267)
370 2ged_A SR-beta, signal recogni 61.5 3.5 0.00012 33.5 2.0 14 2-15 57-70 (193)
371 1ihu_A Arsenical pump-driving 61.4 4 0.00014 40.3 2.7 18 2-19 17-34 (589)
372 2pze_A Cystic fibrosis transme 61.3 3.3 0.00011 35.4 1.9 51 69-119 141-195 (229)
373 1g6h_A High-affinity branched- 61.3 3.2 0.00011 36.1 1.8 47 69-117 164-216 (257)
374 1nrj_B SR-beta, signal recogni 61.2 3.5 0.00012 34.4 2.0 16 1-16 20-35 (218)
375 3q72_A GTP-binding protein RAD 61.1 3.1 0.00011 32.7 1.6 14 2-15 11-24 (166)
376 1z08_A RAS-related protein RAB 60.9 3.7 0.00013 32.3 2.0 14 2-15 15-28 (170)
377 1m7b_A RND3/RHOE small GTP-bin 60.8 3.7 0.00012 33.2 2.0 14 2-15 16-29 (184)
378 2gj8_A MNME, tRNA modification 60.8 3.8 0.00013 32.8 2.1 14 2-15 13-26 (172)
379 2cxx_A Probable GTP-binding pr 60.7 3.6 0.00012 33.2 2.0 14 2-15 10-23 (190)
380 1mv5_A LMRA, multidrug resista 60.7 3.4 0.00012 35.6 1.9 48 69-119 150-203 (243)
381 2ff7_A Alpha-hemolysin translo 60.7 3.4 0.00012 35.8 1.8 47 69-118 156-208 (247)
382 3cr8_A Sulfate adenylyltranfer 60.5 2.6 8.8E-05 41.4 1.1 19 1-19 377-395 (552)
383 1r8s_A ADP-ribosylation factor 60.5 3.6 0.00012 32.2 1.9 14 2-15 9-22 (164)
384 1c1y_A RAS-related protein RAP 60.5 3.6 0.00012 32.2 1.9 14 2-15 12-25 (167)
385 1vpl_A ABC transporter, ATP-bi 60.4 3.5 0.00012 36.0 1.9 49 69-119 157-211 (256)
386 1c9k_A COBU, adenosylcobinamid 60.4 3.8 0.00013 33.7 2.0 15 2-16 8-22 (180)
387 1kao_A RAP2A; GTP-binding prot 60.3 3.9 0.00013 31.9 2.0 14 2-15 12-25 (167)
388 3ihw_A Centg3; RAS, centaurin, 60.0 3.7 0.00013 33.4 1.9 14 2-15 29-42 (184)
389 1ek0_A Protein (GTP-binding pr 59.9 3.9 0.00013 32.1 2.0 14 2-15 12-25 (170)
390 2fn4_A P23, RAS-related protei 59.7 3.8 0.00013 32.6 1.9 14 2-15 18-31 (181)
391 3pqc_A Probable GTP-binding pr 59.5 3.9 0.00014 33.0 2.0 14 2-15 32-45 (195)
392 1z0j_A RAB-22, RAS-related pro 59.4 4.1 0.00014 32.0 2.0 14 2-15 15-28 (170)
393 3fvq_A Fe(3+) IONS import ATP- 59.4 3.9 0.00013 37.7 2.0 50 68-119 148-204 (359)
394 2hxs_A RAB-26, RAS-related pro 59.4 4.2 0.00014 32.4 2.1 14 2-15 15-28 (178)
395 1a7j_A Phosphoribulokinase; tr 59.2 1.9 6.5E-05 38.5 -0.1 18 1-18 13-30 (290)
396 2ihy_A ABC transporter, ATP-bi 59.2 3.8 0.00013 36.3 1.9 14 2-15 56-69 (279)
397 2gk6_A Regulator of nonsense t 59.2 7.2 0.00025 38.8 4.1 29 1-29 203-231 (624)
398 2ghi_A Transport protein; mult 59.1 3.7 0.00013 35.8 1.8 15 2-16 55-69 (260)
399 2lkc_A Translation initiation 59.1 4.1 0.00014 32.4 1.9 14 2-15 17-30 (178)
400 2yz2_A Putative ABC transporte 59.0 3.7 0.00013 36.0 1.8 48 69-118 149-202 (266)
401 1svi_A GTP-binding protein YSX 58.9 4.1 0.00014 33.1 2.0 14 2-15 32-45 (195)
402 1ky3_A GTP-binding protein YPT 58.8 4 0.00014 32.5 1.9 14 2-15 17-30 (182)
403 3t1o_A Gliding protein MGLA; G 58.8 4.7 0.00016 32.6 2.3 16 2-17 23-38 (198)
404 3iuy_A Probable ATP-dependent 58.8 21 0.0007 29.8 6.5 31 77-114 123-153 (228)
405 2ixe_A Antigen peptide transpo 58.8 3.8 0.00013 36.1 1.8 57 69-128 167-229 (271)
406 1f6b_A SAR1; gtpases, N-termin 58.8 3.6 0.00012 33.9 1.6 14 2-15 34-47 (198)
407 1m2o_B GTP-binding protein SAR 58.7 4 0.00014 33.3 1.9 14 2-15 32-45 (190)
408 1r2q_A RAS-related protein RAB 58.7 4.1 0.00014 32.0 1.9 14 2-15 15-28 (170)
409 2nq2_C Hypothetical ABC transp 58.7 3.9 0.00013 35.6 1.9 49 69-118 139-193 (253)
410 3c5c_A RAS-like protein 12; GD 58.7 4 0.00014 33.2 1.9 14 2-15 30-43 (187)
411 1svm_A Large T antigen; AAA+ f 58.5 4 0.00014 37.9 2.0 17 1-17 177-193 (377)
412 1z0f_A RAB14, member RAS oncog 58.4 4.1 0.00014 32.3 1.9 14 2-15 24-37 (179)
413 1wms_A RAB-9, RAB9, RAS-relate 58.3 4.2 0.00014 32.3 1.9 14 2-15 16-29 (177)
414 3b6e_A Interferon-induced heli 58.1 5.7 0.00019 32.8 2.8 14 2-15 57-70 (216)
415 1fzq_A ADP-ribosylation factor 58.1 3.7 0.00013 33.2 1.6 15 2-16 25-39 (181)
416 1g16_A RAS-related protein SEC 58.0 4.2 0.00014 31.9 1.9 14 2-15 12-25 (170)
417 1upt_A ARL1, ADP-ribosylation 58.0 4.2 0.00015 32.0 1.9 14 2-15 16-29 (171)
418 2iwr_A Centaurin gamma 1; ANK 57.9 3.3 0.00011 33.1 1.2 14 2-15 16-29 (178)
419 1lw7_A Transcriptional regulat 57.9 4 0.00014 37.5 1.9 16 2-17 179-194 (365)
420 3eph_A TRNA isopentenyltransfe 57.7 4.4 0.00015 37.9 2.1 18 1-18 10-27 (409)
421 3hdt_A Putative kinase; struct 57.5 4.7 0.00016 34.3 2.2 18 1-18 22-39 (223)
422 2cjw_A GTP-binding protein GEM 57.5 4.4 0.00015 33.2 1.9 14 2-15 15-28 (192)
423 2pjz_A Hypothetical protein ST 57.3 4.3 0.00015 35.6 1.9 15 2-16 39-53 (263)
424 3bc1_A RAS-related protein RAB 57.1 4.4 0.00015 32.6 1.9 14 2-15 20-33 (195)
425 2a9k_A RAS-related protein RAL 57.1 4.4 0.00015 32.4 1.9 14 2-15 27-40 (187)
426 1z47_A CYSA, putative ABC-tran 57.0 4.5 0.00015 37.2 2.0 51 68-119 155-211 (355)
427 2bme_A RAB4A, RAS-related prot 56.9 4.5 0.00015 32.5 1.9 14 2-15 19-32 (186)
428 3kkq_A RAS-related protein M-R 56.7 4.5 0.00016 32.4 1.9 14 2-15 27-40 (183)
429 4dkx_A RAS-related protein RAB 56.6 4.5 0.00015 34.2 1.9 14 2-15 22-35 (216)
430 3k1j_A LON protease, ATP-depen 56.6 5.9 0.0002 39.2 3.0 19 1-19 68-86 (604)
431 3tw8_B RAS-related protein RAB 56.5 4.4 0.00015 32.3 1.7 14 2-15 18-31 (181)
432 3sop_A Neuronal-specific septi 56.4 4.8 0.00016 35.4 2.0 15 2-16 11-25 (270)
433 2y8e_A RAB-protein 6, GH09086P 56.4 4.7 0.00016 32.0 1.9 14 2-15 23-36 (179)
434 4dsu_A GTPase KRAS, isoform 2B 56.4 4.9 0.00017 32.3 2.0 14 2-15 13-26 (189)
435 2yhs_A FTSY, cell division pro 56.2 5.8 0.0002 38.2 2.7 27 1-28 301-327 (503)
436 1mh1_A RAC1; GTP-binding, GTPa 56.2 4.7 0.00016 32.3 1.9 14 2-15 14-27 (186)
437 1vec_A ATP-dependent RNA helic 56.0 24 0.00083 28.7 6.4 12 103-114 121-132 (206)
438 3bwd_D RAC-like GTP-binding pr 56.0 4.8 0.00016 32.1 1.9 14 2-15 17-30 (182)
439 2atv_A RERG, RAS-like estrogen 56.0 4.7 0.00016 32.9 1.9 14 2-15 37-50 (196)
440 3p32_A Probable GTPase RV1496/ 55.9 6.7 0.00023 35.9 3.0 16 2-17 88-103 (355)
441 2efe_B Small GTP-binding prote 55.9 5.1 0.00017 31.9 2.0 14 2-15 21-34 (181)
442 3rlf_A Maltose/maltodextrin im 55.8 4.9 0.00017 37.3 2.1 15 1-15 37-51 (381)
443 2g6b_A RAS-related protein RAB 55.7 4.8 0.00017 32.0 1.9 14 2-15 19-32 (180)
444 2it1_A 362AA long hypothetical 55.7 4.9 0.00017 37.0 2.1 50 68-118 143-198 (362)
445 2yyz_A Sugar ABC transporter, 55.7 4.9 0.00017 37.0 2.0 50 69-119 144-199 (359)
446 1wrb_A DJVLGB; RNA helicase, D 55.7 44 0.0015 28.2 8.3 32 77-115 130-161 (253)
447 2fh5_B SR-beta, signal recogni 55.5 4.8 0.00016 33.3 1.9 14 2-15 16-29 (214)
448 3t34_A Dynamin-related protein 55.4 71 0.0024 28.8 10.1 14 2-15 43-56 (360)
449 1v43_A Sugar-binding transport 55.2 5.1 0.00017 37.1 2.1 50 68-118 151-206 (372)
450 2ew1_A RAS-related protein RAB 55.2 4.9 0.00017 33.2 1.9 14 2-15 35-48 (201)
451 3kta_A Chromosome segregation 55.2 5.4 0.00019 32.2 2.1 15 2-16 35-49 (182)
452 4b3f_X DNA-binding protein smu 55.0 9.6 0.00033 38.0 4.3 40 1-47 213-253 (646)
453 1g29_1 MALK, maltose transport 55.0 5 0.00017 37.1 2.0 50 69-119 150-205 (372)
454 1ksh_A ARF-like protein 2; sma 54.9 4.9 0.00017 32.4 1.8 14 2-15 27-40 (186)
455 2qnr_A Septin-2, protein NEDD5 54.8 5 0.00017 35.9 1.9 14 2-15 27-40 (301)
456 2oil_A CATX-8, RAS-related pro 54.8 5.1 0.00017 32.5 1.9 14 2-15 34-47 (193)
457 3t5g_A GTP-binding protein RHE 54.8 5.3 0.00018 31.9 1.9 14 2-15 15-28 (181)
458 2v9p_A Replication protein E1; 54.8 5.1 0.00017 36.0 2.0 17 1-17 134-150 (305)
459 1gwn_A RHO-related GTP-binding 54.6 5.3 0.00018 33.1 2.0 14 2-15 37-50 (205)
460 3llu_A RAS-related GTP-binding 54.5 5.3 0.00018 32.6 2.0 15 2-16 29-43 (196)
461 3cbq_A GTP-binding protein REM 54.5 4.3 0.00015 33.3 1.4 14 2-15 32-45 (195)
462 2h17_A ADP-ribosylation factor 54.5 5.4 0.00019 32.0 2.0 14 2-15 30-43 (181)
463 2g3y_A GTP-binding protein GEM 54.5 5.3 0.00018 33.6 1.9 14 2-15 46-59 (211)
464 3oes_A GTPase rhebl1; small GT 54.4 5.2 0.00018 32.8 1.9 14 2-15 33-46 (201)
465 1zbd_A Rabphilin-3A; G protein 54.4 5.4 0.00018 32.7 2.0 14 2-15 17-30 (203)
466 1nij_A Hypothetical protein YJ 54.3 4.4 0.00015 36.5 1.5 16 1-16 12-27 (318)
467 2bov_A RAla, RAS-related prote 53.8 5.4 0.00018 32.6 1.9 14 2-15 23-36 (206)
468 3dz8_A RAS-related protein RAB 53.6 5.7 0.00019 32.2 2.0 14 2-15 32-45 (191)
469 2a5j_A RAS-related protein RAB 53.6 5.5 0.00019 32.3 1.9 14 2-15 30-43 (191)
470 3clv_A RAB5 protein, putative; 53.6 5.7 0.0002 32.2 2.0 14 2-15 16-29 (208)
471 1osn_A Thymidine kinase, VZV-T 53.6 4.4 0.00015 37.0 1.3 19 2-20 21-40 (341)
472 3reg_A RHO-like small GTPase; 53.5 5.5 0.00019 32.4 1.9 14 2-15 32-45 (194)
473 1vg8_A RAS-related protein RAB 53.3 5.8 0.0002 32.5 2.0 14 2-15 17-30 (207)
474 3d31_A Sulfate/molybdate ABC t 53.3 4.4 0.00015 37.1 1.3 50 68-118 137-192 (348)
475 1zj6_A ADP-ribosylation factor 53.3 5.8 0.0002 32.0 2.0 14 2-15 25-38 (187)
476 1zd9_A ADP-ribosylation factor 53.2 5.6 0.00019 32.2 1.9 14 2-15 31-44 (188)
477 4ehx_A Tetraacyldisaccharide 4 53.2 6.4 0.00022 35.5 2.4 20 1-20 46-65 (315)
478 2gf9_A RAS-related protein RAB 53.1 5.6 0.00019 32.1 1.9 14 2-15 31-44 (189)
479 2q3h_A RAS homolog gene family 52.9 6.1 0.00021 32.3 2.1 14 2-15 29-42 (201)
480 2gf0_A GTP-binding protein DI- 52.7 5.8 0.0002 32.2 1.9 14 2-15 17-30 (199)
481 1t6n_A Probable ATP-dependent 52.6 25 0.00085 29.0 6.0 14 2-15 60-73 (220)
482 2o52_A RAS-related protein RAB 52.6 5.9 0.0002 32.5 2.0 14 2-15 34-47 (200)
483 2fg5_A RAB-22B, RAS-related pr 52.6 6.1 0.00021 32.1 2.0 14 2-15 32-45 (192)
484 3tui_C Methionine import ATP-b 52.6 6 0.0002 36.5 2.1 51 68-119 173-229 (366)
485 3tkl_A RAS-related protein RAB 52.4 6.1 0.00021 32.0 2.0 14 2-15 25-38 (196)
486 2j1l_A RHO-related GTP-binding 52.4 6 0.0002 32.9 2.0 14 2-15 43-56 (214)
487 3gd7_A Fusion complex of cysti 52.4 5.9 0.0002 36.9 2.0 15 1-15 55-69 (390)
488 4bas_A ADP-ribosylation factor 52.4 5.6 0.00019 32.3 1.7 14 2-15 26-39 (199)
489 1z06_A RAS-related protein RAB 52.4 6.2 0.00021 31.9 2.0 14 2-15 29-42 (189)
490 2fwr_A DNA repair protein RAD2 52.2 39 0.0013 31.7 7.9 16 2-17 117-132 (472)
491 2gks_A Bifunctional SAT/APS ki 52.1 5.8 0.0002 38.8 2.1 18 1-18 380-397 (546)
492 2bbs_A Cystic fibrosis transme 52.1 5.7 0.00019 35.3 1.8 51 69-119 170-224 (290)
493 2b6h_A ADP-ribosylation factor 51.9 5.4 0.00018 32.6 1.6 14 2-15 38-51 (192)
494 1moz_A ARL1, ADP-ribosylation 51.8 4.5 0.00015 32.4 1.0 14 2-15 27-40 (183)
495 1x3s_A RAS-related protein RAB 51.7 6.3 0.00022 31.8 2.0 14 2-15 24-37 (195)
496 2il1_A RAB12; G-protein, GDP, 51.6 5.5 0.00019 32.4 1.6 14 2-15 35-48 (192)
497 2p5s_A RAS and EF-hand domain 51.6 6.1 0.00021 32.3 1.9 14 2-15 37-50 (199)
498 2yv5_A YJEQ protein; hydrolase 51.5 6.3 0.00021 35.2 2.0 16 1-17 173-188 (302)
499 2bcg_Y Protein YP2, GTP-bindin 51.5 6.1 0.00021 32.4 1.9 14 2-15 17-30 (206)
500 2fv8_A H6, RHO-related GTP-bin 51.3 6.2 0.00021 32.6 1.9 14 2-15 34-47 (207)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=3.4e-30 Score=257.52 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=155.9
Q ss_pred CCCCcHHHHHHHHHc----hhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc-cCc-----cchhhhHHHHH
Q 040234 1 MGGLGKTTLARVVYD----LISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-NNI-----RNVYDGINMLR 70 (377)
Q Consensus 1 mgGiGKTtLA~~v~~----~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~-----~~~~~~~~~l~ 70 (377)
|||+||||||+++|+ +++.+|+.++|++ +++... . ++..++..++.+++.... ... .+.+.+...++
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 236 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-K-STFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMIC 236 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-T-HHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-C-CHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHH
Confidence 799999999999995 7899999999996 776532 1 678999999999876422 111 23344688999
Q ss_pred HHhcCc-eEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhhCC-CCCeeecCCCChhhhHHHHHHHhcCCC
Q 040234 71 VRLRRK-KVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHP-VKKVYKLEALTYDEAFRLLCLKAFDTH 148 (377)
Q Consensus 71 ~~l~~k-~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~ 148 (377)
+.|+++ |+||||||||+.+++ .+. . .+||+||||||++.++..+. ....++|++|++++|++||.++++...
T Consensus 237 ~~L~~~kr~LlVLDdv~~~~~~-~~~-~----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 310 (549)
T 2a5y_B 237 NALIDRPNTLFVFDDVVQEETI-RWA-Q----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP 310 (549)
T ss_dssp HHHTTSTTEEEEEEEECCHHHH-HHH-H----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC
T ss_pred HHHcCCCcEEEEEECCCCchhh-ccc-c----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC
Confidence 999996 999999999998865 222 1 37999999999999988775 446799999999999999999987653
Q ss_pred CCchhHHHHHHHHHHHhCCCCchhhHHHHHhhhhchhHHHHHHHHHhhccCchhHHHHHHHHHhhcccCCCCC
Q 040234 149 KPLEEYVELAESVVRICHCQKSTLNALMSVSYTVSHLLLTLCLKLMQYMLCPFILFVYLLFFSVGLQNMPPSD 221 (377)
Q Consensus 149 ~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~Sy~~L~~~~ 221 (377)
. .+.+.+++++|+++||| +|||++++|+.+..+. .++...+...... .....+.+++.+||+.||+..
T Consensus 311 ~-~~~~~~~~~~I~~~c~G--lPLAl~~~g~~l~~~~-w~~~~~l~~~l~~-~~~~~i~~~l~~Sy~~L~~~l 378 (549)
T 2a5y_B 311 V-GEKEEDVLNKTIELSSG--NPATLMMFFKSCEPKT-FEKMAQLNNKLES-RGLVGVECITPYSYKSLAMAL 378 (549)
T ss_dssp ---CHHHHHHHHHHHHHTT--CHHHHHHHHTTCCSSS-HHHHHHHHHHHHH-HCSSTTCCCSSSSSSSHHHHH
T ss_pred C-chhHHHHHHHHHHHhCC--ChHHHHHHHHHhccch-HHHHHHhHHHhhc-ccHHHHHHHHhcccccccHHH
Confidence 2 46778899999999999 9999999999987763 2333333221100 001235567778888876654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=5.2e-26 Score=247.32 Aligned_cols=220 Identities=19% Similarity=0.224 Sum_probs=163.8
Q ss_pred CCCCcHHHHHHHHHch---hccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc---cCccchhhhHHHHHHHhc
Q 040234 1 MGGLGKTTLARVVYDL---ISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD---NNIRNVYDGINMLRVRLR 74 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~---~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~ 74 (377)
|||+||||||++++++ ...+|+.++||..+++.... .....+..++..+..... ....+.+++.+.++..+.
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 232 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS--GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML 232 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH--HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch--HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHh
Confidence 7999999999999995 46778888866657764211 344556667666654321 223466778888899998
Q ss_pred Cc--eEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhh-CCCCCeeecCC-CChhhhHHHHHHHhcCCCCC
Q 040234 75 RK--KVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKL-HPVKKVYKLEA-LTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k--~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~-~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~ 150 (377)
++ |+||||||||+.++|+.+ .+|++||||||++.++.. ......+++++ |++++|++||...++...
T Consensus 233 ~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-- 303 (1249)
T 3sfz_A 233 RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-- 303 (1249)
T ss_dssp SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS--
T ss_pred ccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh--
Confidence 77 999999999999888765 578999999999998854 45567899996 999999999999885432
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHHhhhhchhHHHHHHHHHhhccC---------chhHHHHHHHHHhhcccCCCCC
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSVSYTVSHLLLTLCLKLMQYMLC---------PFILFVYLLFFSVGLQNMPPSD 221 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~~~~~~~~~~~L~~~~~~---------~~~~~~~~~~l~~Sy~~L~~~~ 221 (377)
+..++.+++|+++|+| +|||+.++|++++.+. .+|...+.++... ......+.+++.+||+.|++..
T Consensus 304 -~~~~~~~~~i~~~~~g--lPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~ 379 (1249)
T 3sfz_A 304 -EDLPAEAHSIIKECKG--SPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDI 379 (1249)
T ss_dssp -TTCCTHHHHHHHHTTT--CHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTT
T ss_pred -hhCcHHHHHHHHHhCC--CHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHH
Confidence 2334678999999999 9999999999997644 2333333333211 1122479999999999999987
Q ss_pred cccCCCCCCCceEE--EecCC-CCC
Q 040234 222 KYGNMHSPQREYSI--VVPGS-EIP 243 (377)
Q Consensus 222 ~~~~~~~~~~~~~~--~~pg~-~iP 243 (377)
+..|.. +||+. .||
T Consensus 380 --------~~~~~~l~~f~~~~~i~ 396 (1249)
T 3sfz_A 380 --------KDYYTDLSILQKDVKVP 396 (1249)
T ss_dssp --------HHHHHHGGGSCTTCCEE
T ss_pred --------HHHHHHhCccCCCCeeC
Confidence 666655 56665 666
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.91 E-value=1.2e-24 Score=223.56 Aligned_cols=190 Identities=16% Similarity=0.079 Sum_probs=139.3
Q ss_pred CCCCcHHHHHHHHHc--hhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcccc----------CccchhhhHHH
Q 040234 1 MGGLGKTTLARVVYD--LISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN----------NIRNVYDGINM 68 (377)
Q Consensus 1 mgGiGKTtLA~~v~~--~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~~~~~~~~ 68 (377)
|||+||||||+++++ +++.+|+.+++|.++++.+ +...++..++..+...... .+.+.+.+.+.
T Consensus 158 mGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~----d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~ 233 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233 (1221)
T ss_dssp STTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS----SHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC----CHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHH
Confidence 799999999999997 6889999855555487765 6667777777654332100 01233455677
Q ss_pred HHHHh---cCceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhhCCCCCeeecC------CCChhhhHHH
Q 040234 69 LRVRL---RRKKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHPVKKVYKLE------ALTYDEAFRL 139 (377)
Q Consensus 69 l~~~l---~~k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l~------~L~~~ea~~L 139 (377)
+++.| .++|+||||||||+.++|+.+. +||+||||||++.++..+.....+.++ +|+++||++|
T Consensus 234 Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eL 306 (1221)
T 1vt4_I 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306 (1221)
T ss_dssp HHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHH
Confidence 77766 6899999999999999998863 689999999999887644333456676 9999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhhhch--hHHHHHHHHHhhccCchhHHHHHHHHHhhcccC
Q 040234 140 LCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYTVSH--LLLTLCLKLMQYMLCPFILFVYLLFFSVGLQNM 217 (377)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~~~--~~~~~~~~L~~~~~~~~~~~~~~~~l~~Sy~~L 217 (377)
|.+..... . .++..+ .|+| +|||+.++|++++.+ ....|... . ...+..++.+||+.|
T Consensus 307 F~~~~g~~---~---eeL~~e---ICgG--LPLALkLaGs~Lr~k~~s~eeW~~~------~---~~~I~aaLelSYd~L 366 (1221)
T 1vt4_I 307 LLKYLDCR---P---QDLPRE---VLTT--NPRRLSIIAESIRDGLATWDNWKHV------N---CDKLTTIIESSLNVL 366 (1221)
T ss_dssp HHHHHCCC---T---TTHHHH---HCCC--CHHHHHHHHHHHHHSCSSHHHHHHC------S---CHHHHHHHHHHHHHS
T ss_pred HHHHcCCC---H---HHHHHH---HhCC--CHHHHHHHHHHHhCCCCCHHHHhcC------C---hhHHHHHHHHHHHhC
Confidence 99985322 1 122333 3999 999999999999876 33334221 1 256899999999999
Q ss_pred CCCC
Q 040234 218 PPSD 221 (377)
Q Consensus 218 ~~~~ 221 (377)
++..
T Consensus 367 p~ee 370 (1221)
T 1vt4_I 367 EPAE 370 (1221)
T ss_dssp CTTH
T ss_pred CHHH
Confidence 9864
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.89 E-value=3.2e-23 Score=209.09 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=150.3
Q ss_pred CCCCcHHHHHHHHHchh---ccccccceEEecchhhcccccCHHHHHHH---HHHHHhhcc---ccCccchhhhHHHHHH
Q 040234 1 MGGLGKTTLARVVYDLI---SHEFDGSSFLADVREKCDKEGSVISLQKQ---LLSDLLKLA---DNNIRNVYDGINMLRV 71 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~---~~~f~~~~w~~~~~~~~~~~~~~~~~~~~---i~~~l~~~~---~~~~~~~~~~~~~l~~ 71 (377)
|||+||||||.+++++. +.+|+.++||.++++. +...++.. ++..+.... .....+.+...+.+++
T Consensus 155 ~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 229 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-----DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRI 229 (591)
T ss_dssp CTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-----CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-----chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHH
Confidence 79999999999999853 7889765555546654 22233333 333433111 1223455667788888
Q ss_pred HhcC--ceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHHhhCCCCCeeec---CCCChhhhHHHHHHHhcC
Q 040234 72 RLRR--KKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHPVKKVYKL---EALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 72 ~l~~--k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l---~~L~~~ea~~L~~~~~~~ 146 (377)
.+.+ +++||||||+|+.++++.+ .++++||||||++.++.... ...+++ ++|+.++|++||...++.
T Consensus 230 ~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 230 LMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp HHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred HHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCC
Confidence 8876 7899999999998777654 56899999999998876543 344555 589999999999999864
Q ss_pred CCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhhhchhHHHHHHHHHhhccC---------chhHHHHHHHHHhhcccC
Q 040234 147 THKPLEEYVELAESVVRICHCQKSTLNALMSVSYTVSHLLLTLCLKLMQYMLC---------PFILFVYLLFFSVGLQNM 217 (377)
Q Consensus 147 ~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l~~~~~~~~~~~L~~~~~~---------~~~~~~~~~~l~~Sy~~L 217 (377)
. .....+.+.+|+++|+| +|||+.++|+++..+.. +|...+.+.... ......+..++.+||+.|
T Consensus 302 ~---~~~~~~~~~~i~~~~~G--~PLal~~~a~~l~~~~~-~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L 375 (591)
T 1z6t_A 302 K---KADLPEQAHSIIKECKG--SPLVVSLIGALLRDFPN-RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375 (591)
T ss_dssp C---GGGSCTHHHHHHHHHTT--CHHHHHHHHHHHHHSTT-CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTS
T ss_pred C---cccccHHHHHHHHHhCC--CcHHHHHHHHHHhcCch-hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhC
Confidence 2 22234578999999999 99999999999876531 233333322211 111246889999999999
Q ss_pred CCCCcccCCCCCCCceEE--EecC-CCCCc
Q 040234 218 PPSDKYGNMHSPQREYSI--VVPG-SEIPE 244 (377)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~--~~pg-~~iP~ 244 (377)
++.. +..|.. +||+ ..||.
T Consensus 376 ~~~~--------~~~l~~la~f~~~~~i~~ 397 (591)
T 1z6t_A 376 REDI--------KDYYTDLSILQKDVKVPT 397 (591)
T ss_dssp CTTT--------HHHHHHGGGCCTTCCEEH
T ss_pred CHHH--------HHHHHHccccCCCCccCH
Confidence 9987 555554 5654 56764
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.22 E-value=3.5e-11 Score=115.25 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=103.6
Q ss_pred CCCCcHHHHHHHHHchhccc-----ccc-ceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhc
Q 040234 1 MGGLGKTTLARVVYDLISHE-----FDG-SSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLR 74 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~-----f~~-~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 74 (377)
++|+|||+||+.++++.... +.. .+|+. +.... +...++..++.+++........+..+..+.+.+.+.
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 134 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AFNAP----NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY 134 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GGGCC----SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CCCCC----CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999866543 222 34444 33332 677888888888754322112234455566666664
Q ss_pred --CceEEEEEeCCCCh--------hhhhHhhCCCCCC---C--CCCeEEEEecchhHHhh---------CCCCCeeecCC
Q 040234 75 --RKKVLVVIDDAAHP--------DHLRRLVGEPDWF---G--PGSRIIITTRNEHLLKL---------HPVKKVYKLEA 130 (377)
Q Consensus 75 --~k~~LLVLDdv~~~--------~~~~~l~~~l~~~---~--~gs~IIvTTR~~~v~~~---------~~~~~~~~l~~ 130 (377)
+++++|||||++.. +.+..+...+... . .+..+|+||+...+... ......+.+++
T Consensus 135 ~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~ 214 (412)
T 1w5s_A 135 VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPA 214 (412)
T ss_dssp HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCC
T ss_pred hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCC
Confidence 67999999999763 3333332222110 1 33457878875543211 11123389999
Q ss_pred CChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhC------CCCchhhHHHHH
Q 040234 131 LTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICH------CQKSTLNALMSV 178 (377)
Q Consensus 131 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~------G~~lplal~~~~ 178 (377)
|+.+++.++|..++...........+.+..|++.++ | .|..+..+.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G--~p~~~~~l~ 266 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG--SARRAIVAL 266 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC--cHHHHHHHH
Confidence 999999999976542110111112457788999999 9 997655444
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.09 E-value=6.5e-10 Score=103.79 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=99.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhc--ccccCHHHHHHHHHHHHhh---------------cccc--Cccc
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKC--DKEGSVISLQKQLLSDLLK---------------LADN--NIRN 61 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~--~~~~~~~~~~~~i~~~l~~---------------~~~~--~~~~ 61 (377)
++|+|||+|+++++++.. .+|+. +.... ....+...++..+...+.. .... ...+
T Consensus 39 ~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLS 112 (350)
T ss_dssp CTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCC
T ss_pred CCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccch
Confidence 479999999999998652 45554 43321 0011334455555444321 0000 0123
Q ss_pred hhhhHHHHHHHhcC-ceEEEEEeCCCChhh---------hhHhhCCCCCCCCCCeEEEEecchhHHhh----------C-
Q 040234 62 VYDGINMLRVRLRR-KKVLVVIDDAAHPDH---------LRRLVGEPDWFGPGSRIIITTRNEHLLKL----------H- 120 (377)
Q Consensus 62 ~~~~~~~l~~~l~~-k~~LLVLDdv~~~~~---------~~~l~~~l~~~~~gs~IIvTTR~~~v~~~----------~- 120 (377)
..+..+.+.+.... ++.+|||||++..+. +..+..... ..++.++|+|++...+... .
T Consensus 113 ~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~ 191 (350)
T 2qen_A 113 LREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLY 191 (350)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTT
T ss_pred HHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccc
Confidence 34444555554443 389999999976332 222221111 1246789999887643211 1
Q ss_pred -CCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhh
Q 040234 121 -PVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSY 180 (377)
Q Consensus 121 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~ 180 (377)
.....+++.+|+.+|+.+++........... ..+.+.+|++.+|| +|+++..++..
T Consensus 192 ~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG--~P~~l~~~~~~ 248 (350)
T 2qen_A 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDG--IPGWLVVFGVE 248 (350)
T ss_dssp TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred cCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 1124789999999999999987653221111 13567899999999 99999888764
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=1.3e-09 Score=102.05 Aligned_cols=100 Identities=14% Similarity=0.006 Sum_probs=64.0
Q ss_pred ceEEEEEeCCCChh-----hhhHhhCCCCCCCCCCeEEEEecchhHHh-h---------CC--CCCeeecCCCChhhhHH
Q 040234 76 KKVLVVIDDAAHPD-----HLRRLVGEPDWFGPGSRIIITTRNEHLLK-L---------HP--VKKVYKLEALTYDEAFR 138 (377)
Q Consensus 76 k~~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs~IIvTTR~~~v~~-~---------~~--~~~~~~l~~L~~~ea~~ 138 (377)
++.+|||||++..+ ++..++..+....++.++|+|+|...... . .. ....+++.+|+.+++.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 48999999996632 22222111111124678999999765321 1 11 13578999999999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHhhh
Q 040234 139 LLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVSYT 181 (377)
Q Consensus 139 L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~~l 181 (377)
++............. ..+|++.+|| +|+.+..++..+
T Consensus 217 ~l~~~~~~~~~~~~~----~~~i~~~t~G--~P~~l~~~~~~~ 253 (357)
T 2fna_A 217 FLRRGFQEADIDFKD----YEVVYEKIGG--IPGWLTYFGFIY 253 (357)
T ss_dssp HHHHHHHHHTCCCCC----HHHHHHHHCS--CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCc----HHHHHHHhCC--CHHHHHHHHHHH
Confidence 998764211111111 1789999999 999998887654
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.89 E-value=4.7e-09 Score=92.25 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=68.7
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchhH-Hhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEHL-LKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++.+|||||++. .+.++.+...+.....+..+|+||+.... ... ......+++++++.++..+++...+......
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678999999965 44455554443333456788888876432 111 1224678999999999999998877432221
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHHhh
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSVSY 180 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~~~ 180 (377)
. .++..+.|++.++| .|..+..+...
T Consensus 205 ~--~~~~~~~l~~~~~G--~~~~~~~~~~~ 230 (250)
T 1njg_A 205 H--EPRALQLLARAAEG--SLRDALSLTDQ 230 (250)
T ss_dssp B--CHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 1 14567899999999 99988765543
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.89 E-value=2.2e-08 Score=94.76 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=99.1
Q ss_pred CCCCcHHHHHHHHHchhccc------c-c-cceEEecchhhcccccCHHHHHHHHHHHHhhcccc-CccchhhhHHHHHH
Q 040234 1 MGGLGKTTLARVVYDLISHE------F-D-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN-NIRNVYDGINMLRV 71 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~------f-~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~ 71 (377)
++|+|||+||+.++++.... + . ..+++. ..... .+...++..++.++.+.... ...+.....+.+.+
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 128 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREVG---GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKN 128 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHHHC---SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-CccCC---CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence 47999999999999976443 2 2 234443 33321 04456777777776433211 12234455677777
Q ss_pred HhcCceEEEEEeCCCChh------h-hhHhhCCCCCCCCCCeEEEEecchhHHhhC------CCCCeeecCCCChhhhHH
Q 040234 72 RLRRKKVLVVIDDAAHPD------H-LRRLVGEPDWFGPGSRIIITTRNEHLLKLH------PVKKVYKLEALTYDEAFR 138 (377)
Q Consensus 72 ~l~~k~~LLVLDdv~~~~------~-~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~------~~~~~~~l~~L~~~ea~~ 138 (377)
.+..++.+||||+++... . +..+.... .+..+|+||+.......+ .....+++++++.++..+
T Consensus 129 ~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~ 204 (384)
T 2qby_B 129 GTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKF 204 (384)
T ss_dssp HHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHH
T ss_pred HhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHH
Confidence 787766699999997632 2 33444332 577889998865321111 112389999999999999
Q ss_pred HHHHHhcC---CCCCchhHHHHHHHHHHHhC---CCCchhh
Q 040234 139 LLCLKAFD---THKPLEEYVELAESVVRICH---CQKSTLN 173 (377)
Q Consensus 139 L~~~~~~~---~~~~~~~~~~~~~~I~~~c~---G~~lpla 173 (377)
++..++.. ..... ++..+.|++.++ | .|..
T Consensus 205 il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G--~~r~ 240 (384)
T 2qby_B 205 ILSKYAEYGLIKGTYD---DEILSYIAAISAKEHG--DARK 240 (384)
T ss_dssp HHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCC--CHHH
T ss_pred HHHHHHHhhcccCCcC---HHHHHHHHHHHHhccC--CHHH
Confidence 99987531 12222 345667778887 8 7763
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.89 E-value=3.1e-09 Score=100.47 Aligned_cols=169 Identities=17% Similarity=0.123 Sum_probs=96.6
Q ss_pred CCCCcHHHHHHHHHchhccccc---cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhc--C
Q 040234 1 MGGLGKTTLARVVYDLISHEFD---GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLR--R 75 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~---~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~ 75 (377)
++|+||||||+.+++.....+. ..+|+. ..... ....++..++.+++........+..+..+.+.+.+. +
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~~----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 127 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQID----TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYG 127 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHHC----SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCCC----CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC
Confidence 4799999999999997765542 234444 43333 555666666665532211111233444555665554 3
Q ss_pred ceEEEEEeCCCCh------hhhhHhhCCCCC-CCCCCeEEEEecchhHHhhCC-------CCCeeecCCCChhhhHHHHH
Q 040234 76 KKVLVVIDDAAHP------DHLRRLVGEPDW-FGPGSRIIITTRNEHLLKLHP-------VKKVYKLEALTYDEAFRLLC 141 (377)
Q Consensus 76 k~~LLVLDdv~~~------~~~~~l~~~l~~-~~~gs~IIvTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~L~~ 141 (377)
++.+||||+++.. +.+..+...+.. ...+..+|+||+.......+. ....+.+++++.++..+++.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~ 207 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILT 207 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHH
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHH
Confidence 4899999998652 233333222110 133556788887654322221 12579999999999999998
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHhC---CCCchhhHHH
Q 040234 142 LKAFDTHKPLEEYVELAESVVRICH---CQKSTLNALM 176 (377)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~I~~~c~---G~~lplal~~ 176 (377)
..+........-..+..+.|++.++ | .|..+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~G--~~r~~~~ 243 (386)
T 2qby_A 208 KRAQMAFKPGVLPDNVIKLCAALAAREHG--DARRALD 243 (386)
T ss_dssp HHHHHHBCSSCSCHHHHHHHHHHHHHTTC--CHHHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHhcC--CHHHHHH
Confidence 8653111111112345666777776 9 8885443
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.85 E-value=8.2e-09 Score=97.63 Aligned_cols=163 Identities=13% Similarity=0.057 Sum_probs=97.7
Q ss_pred CCCCcHHHHHHHHHchhcccc-----c-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhc
Q 040234 1 MGGLGKTTLARVVYDLISHEF-----D-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLR 74 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f-----~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 74 (377)
++|+|||+||+.+++...... . ..+++. ..... +...++..++.+++........+..+..+.+.+.+.
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 126 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-ARHRE----TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS 126 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TTTSC----SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CCcCC----CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 479999999999999664432 2 233444 33333 667788888888754322222334455566666663
Q ss_pred --CceEEEEEeCCCChh-------hhhHhhCCCCCC--CCCCeEEEEecchhH--------HhhCCCCCeeecCCCChhh
Q 040234 75 --RKKVLVVIDDAAHPD-------HLRRLVGEPDWF--GPGSRIIITTRNEHL--------LKLHPVKKVYKLEALTYDE 135 (377)
Q Consensus 75 --~k~~LLVLDdv~~~~-------~~~~l~~~l~~~--~~gs~IIvTTR~~~v--------~~~~~~~~~~~l~~L~~~e 135 (377)
+++.+||||+++... .+..+....... ..+..+|.||+.... ..... ...+.+++++.++
T Consensus 127 ~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~ 205 (387)
T 2v1u_A 127 RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQ 205 (387)
T ss_dssp TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHH
T ss_pred ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHH
Confidence 468899999998632 122222221111 235577778776522 22111 2478999999999
Q ss_pred hHHHHHHHhcC---CCCCchhHHHHHHHHHHHhC---CCCchhhH
Q 040234 136 AFRLLCLKAFD---THKPLEEYVELAESVVRICH---CQKSTLNA 174 (377)
Q Consensus 136 a~~L~~~~~~~---~~~~~~~~~~~~~~I~~~c~---G~~lplal 174 (377)
..+++...+.. ..... ++..+.+++.++ | .|..+
T Consensus 206 ~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G--~~r~~ 245 (387)
T 2v1u_A 206 LRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHG--DARRA 245 (387)
T ss_dssp HHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSC--CHHHH
T ss_pred HHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcc--CHHHH
Confidence 99999887532 21212 245677888887 9 88443
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.78 E-value=5.4e-08 Score=92.12 Aligned_cols=168 Identities=17% Similarity=0.115 Sum_probs=101.6
Q ss_pred CCCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhc--Cce
Q 040234 1 MGGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLR--RKK 77 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~k~ 77 (377)
.+|+||||||+.+++....... ..+++. ..... +...++..++..++........+..+..+.+.+.+. +++
T Consensus 52 ~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~~~~~----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 126 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELYKDKTTARFVYIN-GFIYR----NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 126 (389)
T ss_dssp CTTSSHHHHHHHHHHHHTTSCCCEEEEEE-TTTCC----SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHhhhcCeeEEEEe-CccCC----CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCe
Confidence 4799999999999987655421 233443 33332 566777888777643322122234445555555554 568
Q ss_pred EEEEEeCCCCh--hhhhHhhCCCCCC-C---CCCeEEEEecchhHHhhCC-------CCCeeecCCCChhhhHHHHHHHh
Q 040234 78 VLVVIDDAAHP--DHLRRLVGEPDWF-G---PGSRIIITTRNEHLLKLHP-------VKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 78 ~LLVLDdv~~~--~~~~~l~~~l~~~-~---~gs~IIvTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
.+||||+++.. +.+..+...+... . .+..||+||+......... ....+.+++++.++..+++...+
T Consensus 127 ~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 127 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred EEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 89999999763 3444443333211 1 3667888887654332221 12369999999999999998876
Q ss_pred cCCCCCchhHHHHHHHHHHHh---------CCCCchhhHH
Q 040234 145 FDTHKPLEEYVELAESVVRIC---------HCQKSTLNAL 175 (377)
Q Consensus 145 ~~~~~~~~~~~~~~~~I~~~c---------~G~~lplal~ 175 (377)
........-.++..+.|++.+ +| .|..+.
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G--~~r~~~ 244 (389)
T 1fnn_A 207 KAGLAEGSYSEDILQMIADITGAQTPLDTNRG--DARLAI 244 (389)
T ss_dssp HHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC--CHHHHH
T ss_pred HhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC--cHHHHH
Confidence 321001111246778888998 68 765443
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.68 E-value=1.1e-07 Score=82.20 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=86.8
Q ss_pred CCCCcHHHHHHHHHchhccc-cccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHE-FDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
.+|+|||+||+.+++++... +.......+.+... ....+. ..+....... .....++.+
T Consensus 46 ~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~---------------~~~~~~~~v 105 (226)
T 2chg_A 46 PPGTGKTATAIALARDLFGENWRDNFIEMNASDER----GIDVVR-HKIKEFARTA---------------PIGGAPFKI 105 (226)
T ss_dssp STTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT----CHHHHH-HHHHHHHTSC---------------CSTTCSCEE
T ss_pred CCCCCHHHHHHHHHHHHhccccccceEEecccccc----ChHHHH-HHHHHHhccc---------------CCCccCceE
Confidence 37999999999999865433 22222222122211 222221 1111111100 001356889
Q ss_pred EEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecchhH-Hhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHH
Q 040234 80 VVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNEHL-LKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYV 155 (377)
Q Consensus 80 LVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~ 155 (377)
|||||++.. +..+.+...+.....+.++|+||+.... ... ......+++.+++.++..+++.+.+....... ..
T Consensus 106 liiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~ 183 (226)
T 2chg_A 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TE 183 (226)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CH
T ss_pred EEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCC--CH
Confidence 999999763 3333333332222456788888876531 111 12234789999999999999988764222111 13
Q ss_pred HHHHHHHHHhCCCCchhhHHHHH
Q 040234 156 ELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 156 ~~~~~I~~~c~G~~lplal~~~~ 178 (377)
+..+.|++.++| .|..+....
T Consensus 184 ~~~~~l~~~~~g--~~r~l~~~l 204 (226)
T 2chg_A 184 DGLEALIYISGG--DFRKAINAL 204 (226)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHH
Confidence 567789999999 998765433
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1e-06 Score=81.02 Aligned_cols=151 Identities=11% Similarity=0.184 Sum_probs=85.2
Q ss_pred CCCCcHHHHHHHHHchhccc-cccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHh-cCceE
Q 040234 1 MGGLGKTTLARVVYDLISHE-FDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRL-RRKKV 78 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~-f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~k~~ 78 (377)
++|+|||++|+.+++.+... +...+...+.+... .. ..++.++..+..... .+ .+++.
T Consensus 50 ~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~----~~-~~i~~~~~~~~~~~~---------------~~~~~~~~ 109 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR----GI-DVVRNQIKHFAQKKL---------------HLPPGKHK 109 (323)
T ss_dssp STTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC----SH-HHHHTHHHHHHHBCC---------------CCCTTCCE
T ss_pred cCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc----Ch-HHHHHHHHHHHhccc---------------cCCCCCce
Confidence 47999999999999975332 22222222122211 21 222222222211000 01 34588
Q ss_pred EEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchh-HHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCCchhH
Q 040234 79 LVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEH-LLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEY 154 (377)
Q Consensus 79 LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 154 (377)
++||||++. .+..+.|...+.....++.+|+||+... +... ......+++.+++.++..+++...+....... .
T Consensus 110 viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~ 187 (323)
T 1sxj_B 110 IVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY--T 187 (323)
T ss_dssp EEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--C
T ss_pred EEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCC--C
Confidence 999999976 2334434333222245678888876542 1111 12345899999999999999988763221111 1
Q ss_pred HHHHHHHHHHhCCCCchhhHH
Q 040234 155 VELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 155 ~~~~~~I~~~c~G~~lplal~ 175 (377)
++.+..|++.++| .|..+.
T Consensus 188 ~~~~~~l~~~~~G--~~r~a~ 206 (323)
T 1sxj_B 188 NDGLEAIIFTAEG--DMRQAI 206 (323)
T ss_dssp HHHHHHHHHHHTT--CHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHH
Confidence 3567889999999 996543
No 15
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.21 E-value=3.7e-06 Score=81.10 Aligned_cols=156 Identities=18% Similarity=0.158 Sum_probs=89.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+||||||+.+++.+...++..-++. + +...+...+...+... ....+.+.+..+.-+|
T Consensus 138 p~G~GKTtLa~aia~~l~~~~~~~~v~~-v--------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMY-I--------TSEKFLNDLVDSMKEG----------KLNEFREKYRKKVDIL 198 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCCSSCEEE-E--------EHHHHHHHHHHHHHTT----------CHHHHHHHHTTTCSEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEE-e--------eHHHHHHHHHHHHHcc----------cHHHHHHHhcCCCCEE
Confidence 3799999999999997766654332222 1 2223344444443221 1223444444466799
Q ss_pred EEeCCCCh----hhhhHhhCCCCC-CCCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHhcC
Q 040234 81 VIDDAAHP----DHLRRLVGEPDW-FGPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 81 VLDdv~~~----~~~~~l~~~l~~-~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 146 (377)
+|||++.. ...+.+...+.. ...|..||+||... .+..++.....+.+++++.++-.+++.+.+..
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999642 122222221110 03466788888752 22333333457889999999999999887632
Q ss_pred CCCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 147 THKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 147 ~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
..-..+ .+....|++.++| .+-.+..+..
T Consensus 279 ~~~~i~--~e~l~~la~~~~g--n~R~l~~~L~ 307 (440)
T 2z4s_A 279 EHGELP--EEVLNFVAENVDD--NLRRLRGAII 307 (440)
T ss_dssp HTCCCC--TTHHHHHHHHCCS--CHHHHHHHHH
T ss_pred cCCCCC--HHHHHHHHHhcCC--CHHHHHHHHH
Confidence 111111 2456778889999 7766654433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=6.7e-06 Score=75.62 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=63.6
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecchhH-HhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNEHL-LKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++.++|+|+++.. +..+.+...+.....+.++|+||....- ...+ .....+.+.+++.++..+++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 56789999999763 3444444333222456788888865421 1111 123478999999999999998876433221
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
-..+..+.|++.++| .|..+...
T Consensus 189 --~~~~~~~~l~~~~~g--~~r~~~~~ 211 (327)
T 1iqp_A 189 --LTEEGLQAILYIAEG--DMRRAINI 211 (327)
T ss_dssp --ECHHHHHHHHHHHTT--CHHHHHHH
T ss_pred --CCHHHHHHHHHHCCC--CHHHHHHH
Confidence 124567889999999 88865443
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.10 E-value=2.1e-05 Score=71.96 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=64.3
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchh-HHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEH-LLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++. .+..+.+...+.....+.++|+||.... +... ......+++.+++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999976 3444555555544345677887776543 2111 1224579999999999999998877433222
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALM 176 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~ 176 (377)
-.++..+.|++.++| .+..+..
T Consensus 181 --i~~~~l~~l~~~~~G--~~r~~~~ 202 (319)
T 2chq_A 181 --ITEDGLEALIYISGG--DFRKAIN 202 (319)
T ss_dssp --BCHHHHHHHHHTTTT--CHHHHHH
T ss_pred --CCHHHHHHHHHHcCC--CHHHHHH
Confidence 124567788889999 8776543
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2e-05 Score=72.33 Aligned_cols=139 Identities=12% Similarity=-0.004 Sum_probs=74.8
Q ss_pred CCCCcHHHHHHHHHchhccccc-------cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHH-
Q 040234 1 MGGLGKTTLARVVYDLISHEFD-------GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVR- 72 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~-------~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 72 (377)
.+|+|||++|+.+++++..... ..+.+. ..... +...++..|++++.+.........+.+...+...
T Consensus 53 pPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c~~~~----t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~ 127 (318)
T 3te6_A 53 ADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-ALELA----GMDALYEKIWFAISKENLCGDISLEALNFYITNVP 127 (318)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-TTCCC------HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-ccccC----CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh
Confidence 4799999999999997653221 123343 22222 6678888899888654221111222222222221
Q ss_pred -hcCceEEEEEeCCCCh---hhhhHhhCCCCCCCCCCeEEEEecchh-----H----HhhCCCCCeeecCCCChhhhHHH
Q 040234 73 -LRRKKVLVVIDDAAHP---DHLRRLVGEPDWFGPGSRIIITTRNEH-----L----LKLHPVKKVYKLEALTYDEAFRL 139 (377)
Q Consensus 73 -l~~k~~LLVLDdv~~~---~~~~~l~~~l~~~~~gs~IIvTTR~~~-----v----~~~~~~~~~~~l~~L~~~ea~~L 139 (377)
-.+++.+++||+++.. +.+..+............||.++.... + ..++. ...+.+.+++.++-.++
T Consensus 128 ~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~I 206 (318)
T 3te6_A 128 KAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQM 206 (318)
T ss_dssp GGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHH
T ss_pred hccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHH
Confidence 1456899999999863 222222210000011223444443321 1 12221 24689999999999999
Q ss_pred HHHHhc
Q 040234 140 LCLKAF 145 (377)
Q Consensus 140 ~~~~~~ 145 (377)
+.+++.
T Consensus 207 l~~Rl~ 212 (318)
T 3te6_A 207 IITRLK 212 (318)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.00 E-value=3.2e-06 Score=74.04 Aligned_cols=144 Identities=12% Similarity=0.038 Sum_probs=79.7
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.+++..........++. ...... .. .+.. +.+ .++-+|
T Consensus 60 ~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~---~~----------------------~~~~----~~~-~~~~vl 108 (242)
T 3bos_A 60 PVKSGRTHLIHAACARANELERRSFYIP-LGIHAS---IS----------------------TALL----EGL-EQFDLI 108 (242)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGG---SC----------------------GGGG----TTG-GGSSEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHH---HH----------------------HHHH----Hhc-cCCCEE
Confidence 3799999999999996654433334443 322210 00 0000 011 345689
Q ss_pred EEeCCCChh--h--hhHhhCCCCCC-CCCC-eEEEEecchh---------HHhhCCCCCeeecCCCChhhhHHHHHHHhc
Q 040234 81 VIDDAAHPD--H--LRRLVGEPDWF-GPGS-RIIITTRNEH---------LLKLHPVKKVYKLEALTYDEAFRLLCLKAF 145 (377)
Q Consensus 81 VLDdv~~~~--~--~~~l~~~l~~~-~~gs-~IIvTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 145 (377)
||||++... . .+.+...+... ..+. ++|+||+... +.........+++++++.++..+++...+.
T Consensus 109 iiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 109 CIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp EEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 999986531 1 22222211100 1122 4788776421 122111236789999999999999988764
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 146 DTHKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 146 ~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
..... -.++..+.|++.++| .+-.+..+..
T Consensus 189 ~~~~~--~~~~~~~~l~~~~~g--~~r~l~~~l~ 218 (242)
T 3bos_A 189 MRGLQ--LPEDVGRFLLNRMAR--DLRTLFDVLD 218 (242)
T ss_dssp HTTCC--CCHHHHHHHHHHTTT--CHHHHHHHHH
T ss_pred HcCCC--CCHHHHHHHHHHccC--CHHHHHHHHH
Confidence 22211 124567789999999 7766654433
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.96 E-value=4.7e-05 Score=71.34 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=63.4
Q ss_pred CceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchh-HHhh-CCCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEH-LLKL-HPVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++.++|+||++. .+..+.+...+.....+..+|++|.... +... ......+++.+++.++..+++...+......
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4578999999975 3334444433322244566777775432 2111 1234678999999999999998766321111
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
. ..+.+..|++.++| .|..+.....
T Consensus 198 ~--~~~a~~~l~~~~~G--~~r~~~~~l~ 222 (373)
T 1jr3_A 198 H--EPRALQLLARAAEG--SLRDALSLTD 222 (373)
T ss_dssp B--CHHHHHHHHHHSSS--CHHHHHHHHH
T ss_pred C--CHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 1 14567889999999 9988765443
No 21
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.87 E-value=8.1e-05 Score=68.97 Aligned_cols=95 Identities=17% Similarity=0.057 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecchh-HHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNEH-LLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
+++-++|+|+++.. +..+.|+..+..-.++..+|++|.... +...+ +....+++.++++++..+.+.... ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC
Confidence 45779999999863 334444443333245667777766542 32222 345689999999999999998775 11
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
. ++.+..+++.++| .|..+....
T Consensus 183 ~---~~~~~~l~~~s~G--~~r~a~~~l 205 (334)
T 1a5t_A 183 S---QDALLAALRLSAG--SPGAALALF 205 (334)
T ss_dssp C---HHHHHHHHHHTTT--CHHHHHHTT
T ss_pred C---HHHHHHHHHHcCC--CHHHHHHHh
Confidence 1 3456789999999 887665443
No 22
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.85 E-value=6.5e-05 Score=68.99 Aligned_cols=72 Identities=17% Similarity=-0.078 Sum_probs=46.8
Q ss_pred CCeEEEEecchh-HHhhC--CCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 104 GSRIIITTRNEH-LLKLH--PVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 104 gs~IIvTTR~~~-v~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
...+|.||.... +...+ .....+.+.+++.++..+++...+....... .++..+.|++.++| .|..+..+..
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G--~~r~l~~~l~ 212 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRG--TMRVAKRLFR 212 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCS--CHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccC--CHHHHHHHHH
Confidence 345666665432 11111 1135789999999999999988774332221 24667889999999 9987765544
No 23
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.84 E-value=0.00024 Score=65.40 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=78.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.+++.....-...+++. ...+...+...+... ....+...+. +.-+|
T Consensus 45 ~~GtGKT~la~~i~~~~~~~~~~~~~i~-----------~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~~vL 102 (324)
T 1l8q_A 45 SVGTGKTHLLQAAGNEAKKRGYRVIYSS-----------ADDFAQAMVEHLKKG----------TINEFRNMYK-SVDLL 102 (324)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEEE-----------HHHHHHHHHHHHHHT----------CHHHHHHHHH-TCSEE
T ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEEEE-----------HHHHHHHHHHHHHcC----------cHHHHHHHhc-CCCEE
Confidence 3799999999999996643311122322 223333333333211 1122233332 36699
Q ss_pred EEeCCCChh----hhhHhhCCCCC-CCCCCeEEEEecch---------hHHhhCCCCCeeecCCCChhhhHHHHHHHhcC
Q 040234 81 VIDDAAHPD----HLRRLVGEPDW-FGPGSRIIITTRNE---------HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 81 VLDdv~~~~----~~~~l~~~l~~-~~~gs~IIvTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 146 (377)
+||++.... ..+.+...+.. ...+..||+||... .+..++.....+++++ +.++-.+++...+..
T Consensus 103 ~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 103 LLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred EEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 999986532 11222211110 02355788887642 2222223335689999 999999999887742
Q ss_pred CCCCchhHHHHHHHHHHHhCCCCchhhH
Q 040234 147 THKPLEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 147 ~~~~~~~~~~~~~~I~~~c~G~~lplal 174 (377)
.....+ ++....|++.+ | ..-.+
T Consensus 182 ~~~~l~--~~~l~~l~~~~-g--~~r~l 204 (324)
T 1l8q_A 182 FNLELR--KEVIDYLLENT-K--NVREI 204 (324)
T ss_dssp TTCCCC--HHHHHHHHHHC-S--SHHHH
T ss_pred cCCCCC--HHHHHHHHHhC-C--CHHHH
Confidence 222111 45677788888 7 55443
No 24
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.67 E-value=0.00033 Score=65.51 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=54.2
Q ss_pred eEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecc-----------------hhHHhhCCCCCeeecCCCChhhhH
Q 040234 77 KVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRN-----------------EHLLKLHPVKKVYKLEALTYDEAF 137 (377)
Q Consensus 77 ~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~ 137 (377)
+-+|+||+++.. +....+...+.. .....++++|.. +.+.. ....+.+.+++.++..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~-~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALES-DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTK 265 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTC-TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhC-cCCCeeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHH
Confidence 359999999763 334444433332 222234444431 12222 2345799999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHhC-CCCchhhHHH
Q 040234 138 RLLCLKAFDTHKPLEEYVELAESVVRICH-CQKSTLNALM 176 (377)
Q Consensus 138 ~L~~~~~~~~~~~~~~~~~~~~~I~~~c~-G~~lplal~~ 176 (377)
+++..++...... -..+....|++.+. | .|-.+..
T Consensus 266 ~il~~~~~~~~~~--~~~~~l~~l~~~~~~G--~~r~~~~ 301 (368)
T 3uk6_A 266 QILRIRCEEEDVE--MSEDAYTVLTRIGLET--SLRYAIQ 301 (368)
T ss_dssp HHHHHHHHHTTCC--BCHHHHHHHHHHHHHS--CHHHHHH
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHHhcCC--CHHHHHH
Confidence 9998876432222 12456778888887 7 6665543
No 25
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.60 E-value=0.00028 Score=63.19 Aligned_cols=88 Identities=16% Similarity=0.106 Sum_probs=49.8
Q ss_pred hcCceEEEEEeCCCCh------------hhhh---HhhCCCCCCCCCCeEEEEecchhHHhh--C-C-CCCeeecCCCCh
Q 040234 73 LRRKKVLVVIDDAAHP------------DHLR---RLVGEPDWFGPGSRIIITTRNEHLLKL--H-P-VKKVYKLEALTY 133 (377)
Q Consensus 73 l~~k~~LLVLDdv~~~------------~~~~---~l~~~l~~~~~gs~IIvTTR~~~v~~~--~-~-~~~~~~l~~L~~ 133 (377)
...+.-+|+||+++.. ..++ .+............||.||........ . . -...+++++++.
T Consensus 121 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 121 YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 3456889999998542 1222 332222212233456777877654333 1 1 145688899988
Q ss_pred -hhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 134 -DEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 134 -~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
++..+++.+.. ... .+....|++.+.|
T Consensus 201 r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 201 GEQLLEALELLG----NFK---DKERTTIAQQVKG 228 (272)
T ss_dssp HHHHHHHHHHHT----CSC---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC----CCC---HHHHHHHHHHhcC
Confidence 66666655432 111 3456788888877
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=0.00024 Score=65.91 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=59.7
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecchh-HHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNEH-LLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
.++-+|++|+++.. .....+...+.......++|++|.... +...+ .....+.+.+++.++..+.+...+......
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 35569999998652 223333332222234566777765432 11111 113478899999999999998876432211
Q ss_pred chhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 151 LEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 151 ~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
. .++..+.|++.++| .|..+...
T Consensus 212 i--~~~~l~~l~~~~~G--~~r~~~~~ 234 (353)
T 1sxj_D 212 C--DDGVLERILDISAG--DLRRGITL 234 (353)
T ss_dssp C--CHHHHHHHHHHTSS--CHHHHHHH
T ss_pred C--CHHHHHHHHHHcCC--CHHHHHHH
Confidence 1 24577899999999 88765433
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.55 E-value=0.00074 Score=59.75 Aligned_cols=145 Identities=16% Similarity=0.096 Sum_probs=74.3
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++++....| +.+. .+........ .........+.......+.+|
T Consensus 47 ~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~~--------------------~~~~~~~~~~~~a~~~~~~vl 102 (262)
T 2qz4_A 47 PPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIGG--------------------LGAARVRSLFKEARARAPCIV 102 (262)
T ss_dssp CTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSSTT--------------------HHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhccC--------------------hhHHHHHHHHHHHHhcCCeEE
Confidence 479999999999998664332 1121 2221100000 001111222333334457899
Q ss_pred EEeCCCCh-----------------hhhhHhhCCCCC--CCCCCeEEEEecchhHHh-hC----CCCCeeecCCCChhhh
Q 040234 81 VIDDAAHP-----------------DHLRRLVGEPDW--FGPGSRIIITTRNEHLLK-LH----PVKKVYKLEALTYDEA 136 (377)
Q Consensus 81 VLDdv~~~-----------------~~~~~l~~~l~~--~~~gs~IIvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea 136 (377)
+||+++.. ..+..++..+.. ...+..||.||....... .. .-...+.++..+.++-
T Consensus 103 ~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r 182 (262)
T 2qz4_A 103 YIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182 (262)
T ss_dssp EEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHH
T ss_pred EEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHH
Confidence 99999753 112223221111 123446666775543211 11 2235678899999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchh
Q 040234 137 FRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTL 172 (377)
Q Consensus 137 ~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lpl 172 (377)
.+++...+....... ........+++.+.| .+-
T Consensus 183 ~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g--~~~ 215 (262)
T 2qz4_A 183 REIFEQHLKSLKLTQ-SSTFYSQRLAELTPG--FSG 215 (262)
T ss_dssp HHHHHHHHHHTTCCB-THHHHHHHHHHTCTT--CCH
T ss_pred HHHHHHHHHhCCCCc-chhhHHHHHHHHCCC--CCH
Confidence 999987764322221 112235778888888 654
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.54 E-value=0.00027 Score=68.08 Aligned_cols=144 Identities=18% Similarity=0.215 Sum_probs=77.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+||||||+.+++.....|.. +. .... ....+ +.++.... .....+++.+|
T Consensus 58 ppGtGKTtlAr~ia~~~~~~f~~---l~-a~~~-----~~~~i-r~~~~~a~-----------------~~~~~~~~~iL 110 (447)
T 3pvs_A 58 PPGTGKTTLAEVIARYANADVER---IS-AVTS-----GVKEI-REAIERAR-----------------QNRNAGRRTIL 110 (447)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEE---EE-TTTC-----CHHHH-HHHHHHHH-----------------HHHHTTCCEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCeEE---EE-eccC-----CHHHH-HHHHHHHH-----------------HhhhcCCCcEE
Confidence 37999999999999976544321 11 1111 22222 12211110 01114567899
Q ss_pred EEeCCCCh--hhhhHhhCCCCCCCCCCeEEE-Eecchh--HH-hhCCCCCeeecCCCChhhhHHHHHHHhcCCC-----C
Q 040234 81 VIDDAAHP--DHLRRLVGEPDWFGPGSRIII-TTRNEH--LL-KLHPVKKVYKLEALTYDEAFRLLCLKAFDTH-----K 149 (377)
Q Consensus 81 VLDdv~~~--~~~~~l~~~l~~~~~gs~IIv-TTR~~~--v~-~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-----~ 149 (377)
+||++... .+.+.|+..+.. ....+|. ||.+.. +. .......++.+.+++.++..+++.+.+.... .
T Consensus 111 fIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~ 188 (447)
T 3pvs_A 111 FVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQ 188 (447)
T ss_dssp EEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTS
T ss_pred EEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccc
Confidence 99999763 333444433322 2233443 555442 11 1113345788999999999999988764311 1
Q ss_pred CchhHHHHHHHHHHHhCCCCchhhHH
Q 040234 150 PLEEYVELAESVVRICHCQKSTLNAL 175 (377)
Q Consensus 150 ~~~~~~~~~~~I~~~c~G~~lplal~ 175 (377)
...-..+..+.|++.++| .+-.+.
T Consensus 189 ~~~i~~~al~~L~~~~~G--d~R~ll 212 (447)
T 3pvs_A 189 DIVLPDETRRAIAELVNG--DARRAL 212 (447)
T ss_dssp SEECCHHHHHHHHHHHCS--CHHHHH
T ss_pred cCcCCHHHHHHHHHHCCC--CHHHHH
Confidence 112234567778888888 666543
No 29
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.50 E-value=0.0012 Score=60.60 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=52.2
Q ss_pred cCceEEEEEeCCCChh-------------hhhHhhC---CCCCCCCCCeEEEEecch-----hHHhhCCCCCeeecCCCC
Q 040234 74 RRKKVLVVIDDAAHPD-------------HLRRLVG---EPDWFGPGSRIIITTRNE-----HLLKLHPVKKVYKLEALT 132 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~~-------------~~~~l~~---~l~~~~~gs~IIvTTR~~-----~v~~~~~~~~~~~l~~L~ 132 (377)
..++.+|+||+++... ....++. .+.....+..||.||... .+.+ .-...+.++..+
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 180 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 180 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCC
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcC
Confidence 3567899999997531 1122221 111112344555566543 2222 234567889999
Q ss_pred hhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 133 YDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 133 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
.++-.+++........... .......|++.+.|
T Consensus 181 ~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G 213 (322)
T 1xwi_A 181 PHARAAMFKLHLGTTQNSL--TEADFRELGRKTDG 213 (322)
T ss_dssp HHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCC
Confidence 9999999988774332211 13456788888888
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.49 E-value=0.00012 Score=66.03 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=73.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.+++.....|- .+. ........ ... ........+......++.+|
T Consensus 59 ~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~~~~--~~~------------------~~~~~~~~~~~~~~~~~~vl 114 (285)
T 3h4m_A 59 PPGTGKTLLAKAVATETNATFI---RVV-GSELVKKF--IGE------------------GASLVKDIFKLAKEKAPSII 114 (285)
T ss_dssp SSSSSHHHHHHHHHHHTTCEEE---EEE-GGGGCCCS--TTH------------------HHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEE---EEe-hHHHHHhc--cch------------------HHHHHHHHHHHHHHcCCeEE
Confidence 4799999999999987644321 111 22211110 000 00111122222234456899
Q ss_pred EEeCCCCh----------------hhhhHhhCCCC--CCCCCCeEEEEecchhH-----HhhCCCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHP----------------DHLRRLVGEPD--WFGPGSRIIITTRNEHL-----LKLHPVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~----------------~~~~~l~~~l~--~~~~gs~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~ 137 (377)
+||+++.. ..+..+...+. ....+..||.||..... .....-...+.++..+.++..
T Consensus 115 ~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~ 194 (285)
T 3h4m_A 115 FIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRL 194 (285)
T ss_dssp EEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHH
T ss_pred EEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHH
Confidence 99999642 11222222111 11235567778775422 111122347889999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 138 RLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 138 ~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
+++............ .....|++...|
T Consensus 195 ~il~~~~~~~~~~~~---~~~~~l~~~~~g 221 (285)
T 3h4m_A 195 EILKIHTRKMNLAED---VNLEEIAKMTEG 221 (285)
T ss_dssp HHHHHHHTTSCBCTT---CCHHHHHHHCTT
T ss_pred HHHHHHHhcCCCCCc---CCHHHHHHHcCC
Confidence 999887743221111 124567777777
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00066 Score=63.02 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=59.9
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch-hHHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCC
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKP 150 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 150 (377)
.++-++|||++... +..+.+...+.....+..+|++|... .+...+ .....+++.+++.++..+.+...+....-.
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 46679999999763 22233332222113466777777653 221111 234678999999999999998776322111
Q ss_pred chhH-HHHHHHHHHHhCCCCchhhHHHHH
Q 040234 151 LEEY-VELAESVVRICHCQKSTLNALMSV 178 (377)
Q Consensus 151 ~~~~-~~~~~~I~~~c~G~~lplal~~~~ 178 (377)
-. ++.+..|++.++| .+-.+....
T Consensus 213 --~~~~~~l~~i~~~~~G--~~r~a~~~l 237 (354)
T 1sxj_E 213 --LETKDILKRIAQASNG--NLRVSLLML 237 (354)
T ss_dssp --ECCSHHHHHHHHHHTT--CHHHHHHHH
T ss_pred --CCcHHHHHHHHHHcCC--CHHHHHHHH
Confidence 11 2467788899999 776654433
No 32
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00038 Score=68.45 Aligned_cols=93 Identities=9% Similarity=0.080 Sum_probs=53.9
Q ss_pred CceEEEEEeCCCChh-----hhhHhhCCCCCCCCCCeEEEEecchh---HHhhCCCCCeeecCCCChhhhHHHHHHHhcC
Q 040234 75 RKKVLVVIDDAAHPD-----HLRRLVGEPDWFGPGSRIIITTRNEH---LLKLHPVKKVYKLEALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 75 ~k~~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs~IIvTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 146 (377)
.++.+|+||+++... .+..+...+. ..+..||+++.... +.........+.+++++.++..+++...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 567899999996521 1222222111 12334665554322 2222234567899999999999998876643
Q ss_pred CC-CCchhHHHHHHHHHHHhCCCCchhhH
Q 040234 147 TH-KPLEEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 147 ~~-~~~~~~~~~~~~I~~~c~G~~lplal 174 (377)
.. ... ++....|++.++| .+-.+
T Consensus 225 ~~~~i~---~~~l~~la~~s~G--diR~~ 248 (516)
T 1sxj_A 225 EKFKLD---PNVIDRLIQTTRG--DIRQV 248 (516)
T ss_dssp HTCCCC---TTHHHHHHHHTTT--CHHHH
T ss_pred cCCCCC---HHHHHHHHHHcCC--cHHHH
Confidence 21 112 2356788888888 55443
No 33
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.45 E-value=0.00066 Score=62.43 Aligned_cols=90 Identities=11% Similarity=0.031 Sum_probs=52.7
Q ss_pred cCceEEEEEeCCCChh-------------hhhHhh---CCCCCCCCCCeEEEEecchh-----HHhhCCCCCeeecCCCC
Q 040234 74 RRKKVLVVIDDAAHPD-------------HLRRLV---GEPDWFGPGSRIIITTRNEH-----LLKLHPVKKVYKLEALT 132 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~~-------------~~~~l~---~~l~~~~~gs~IIvTTR~~~-----v~~~~~~~~~~~l~~L~ 132 (377)
..++.+|+||+++... ....++ ..+.....+..||.||.... +.++ -...+.++..+
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~ 185 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPD 185 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH--CCEEEECCCCC
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc--cCeEEEeCCCC
Confidence 3466899999997421 112222 21111134555666776532 2222 23567888899
Q ss_pred hhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 133 YDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 133 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
.++-.+++...+........ ......|++.+.|
T Consensus 186 ~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g 218 (322)
T 3eie_A 186 LAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEG 218 (322)
T ss_dssp HHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCC
Confidence 99999999888754322211 3456788888877
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.40 E-value=0.0011 Score=61.89 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=52.1
Q ss_pred cCceEEEEEeCCCChh-------------hhhHhhCC---CCCCCCCCeEEEEecch-----hHHhhCCCCCeeecCCCC
Q 040234 74 RRKKVLVVIDDAAHPD-------------HLRRLVGE---PDWFGPGSRIIITTRNE-----HLLKLHPVKKVYKLEALT 132 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~~-------------~~~~l~~~---l~~~~~gs~IIvTTR~~-----~v~~~~~~~~~~~l~~L~ 132 (377)
..++.+|+||+++... ....++.. +.....+..||.||... .+.+ .-...+.++..+
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 218 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 218 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCC
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcC
Confidence 4567899999987521 12222211 11112344566666543 2223 334567889999
Q ss_pred hhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 133 YDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 133 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
.++-.+++............ ......|++.+.|
T Consensus 219 ~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G 251 (355)
T 2qp9_X 219 LAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEG 251 (355)
T ss_dssp HHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCC
Confidence 99999999887743321111 3456788888888
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.36 E-value=7.3e-05 Score=62.52 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||+||+.+++.+.
T Consensus 51 ~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998653
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.35 E-value=0.0014 Score=59.59 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=43.2
Q ss_pred eEEEEEeCCC-----------ChhhhhHhhCCCCCCCCCCeEEEEecchh----------HHhhCCCCCeeecCCCChhh
Q 040234 77 KVLVVIDDAA-----------HPDHLRRLVGEPDWFGPGSRIIITTRNEH----------LLKLHPVKKVYKLEALTYDE 135 (377)
Q Consensus 77 ~~LLVLDdv~-----------~~~~~~~l~~~l~~~~~gs~IIvTTR~~~----------v~~~~~~~~~~~l~~L~~~e 135 (377)
.-+|+||+++ +.+....|...+.....+..||+||.... +..+ ....+.+++++.++
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEE 208 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHH
Confidence 4599999997 33334444433333345667888875432 2222 13678999999999
Q ss_pred hHHHHHHHhc
Q 040234 136 AFRLLCLKAF 145 (377)
Q Consensus 136 a~~L~~~~~~ 145 (377)
-.+++...+.
T Consensus 209 ~~~il~~~l~ 218 (309)
T 3syl_A 209 LFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 37
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.34 E-value=0.002 Score=62.01 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=54.5
Q ss_pred cCceEEEEEeCCCCh-------------hhhhHhhCCCCC---CCCCCeEEEEecchh-----HHhhCCCCCeeecCCCC
Q 040234 74 RRKKVLVVIDDAAHP-------------DHLRRLVGEPDW---FGPGSRIIITTRNEH-----LLKLHPVKKVYKLEALT 132 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~-------------~~~~~l~~~l~~---~~~gs~IIvTTR~~~-----v~~~~~~~~~~~l~~L~ 132 (377)
..++.+|+||+++.. .....++..+.. ...+..||.||.... +.+ .-...+.++..+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 302 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPE 302 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCC
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcC
Confidence 456789999999753 123344444432 133456666776542 222 233567888888
Q ss_pred hhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 133 YDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 133 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
.++-.++|........... .......|++.+.|
T Consensus 303 ~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G 335 (444)
T 2zan_A 303 AHARAAMFRLHLGSTQNSL--TEADFQELGRKTDG 335 (444)
T ss_dssp HHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCC
Confidence 8888898888764322111 13456788888888
No 38
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.28 E-value=0.00027 Score=59.03 Aligned_cols=90 Identities=19% Similarity=0.129 Sum_probs=46.5
Q ss_pred CCCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
..|+||||||+.+++.+..... ..+++ +..++...+....... ...... +.+. +.-+
T Consensus 46 ~~G~GKTtL~~~i~~~~~~~~g~~~~~~-----------~~~~~~~~~~~~~~~~------~~~~~~----~~~~-~~~l 103 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIYEKKGIRGYFF-----------DTKDLIFRLKHLMDEG------KDTKFL----KTVL-NSPV 103 (180)
T ss_dssp SSSSSHHHHHHHHHHHHHHHSCCCCCEE-----------EHHHHHHHHHHHHHHT------CCSHHH----HHHH-TCSE
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCeEEEE-----------EHHHHHHHHHHHhcCc------hHHHHH----HHhc-CCCE
Confidence 3699999999999996642212 22232 3334444444333221 111112 2222 4568
Q ss_pred EEEeCCCC--hhh-----hhHhhCCCCCCCCCCeEEEEecch
Q 040234 80 VVIDDAAH--PDH-----LRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 80 LVLDdv~~--~~~-----~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
||||++.. .+. +..+..... ..+..+|+||...
T Consensus 104 lilDE~~~~~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 104 LVLDDLGSERLSDWQRELISYIITYRY--NNLKSTIITTNYS 143 (180)
T ss_dssp EEEETCSSSCCCHHHHHHHHHHHHHHH--HTTCEEEEECCCC
T ss_pred EEEeCCCCCcCCHHHHHHHHHHHHHHH--HcCCCEEEEcCCC
Confidence 99999973 222 222222111 2467888888744
No 39
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.28 E-value=0.00053 Score=63.31 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=44.3
Q ss_pred CeEEEEecchhH-Hhh--CCCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHHHh
Q 040234 105 SRIIITTRNEHL-LKL--HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMSVS 179 (377)
Q Consensus 105 s~IIvTTR~~~v-~~~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~~~ 179 (377)
..+|.+|..... ... ......+.+++++.++..+++...+..... ....+..+.|++.++| .|-.+..+..
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G--~~r~l~~~l~ 228 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRS--TPRIALRLLK 228 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTT--CHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCc--CHHHHHHHHH
Confidence 456666654321 111 122367999999999999999877643221 1124567788889999 8865554433
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.23 E-value=0.0012 Score=60.43 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=73.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
+|+|||++|+.+++.+... .+.+. .+.. .. ..++..+........ ..+++-+|+
T Consensus 57 ~G~GKT~la~~la~~l~~~---~~~i~-~~~~-----~~-~~i~~~~~~~~~~~~----------------~~~~~~vli 110 (324)
T 3u61_B 57 PGTGKTTVAKALCHDVNAD---MMFVN-GSDC-----KI-DFVRGPLTNFASAAS----------------FDGRQKVIV 110 (324)
T ss_dssp TTSSHHHHHHHHHHHTTEE---EEEEE-TTTC-----CH-HHHHTHHHHHHHBCC----------------CSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHhCCC---EEEEc-cccc-----CH-HHHHHHHHHHHhhcc----------------cCCCCeEEE
Confidence 6999999999999876322 12222 2221 22 222222222111100 123678999
Q ss_pred EeCCCChh---hhhHhhCCCCCCCCCCeEEEEecchh-----HHhhCCCCCeeecCCCChhhhHHHHH-------HHhcC
Q 040234 82 IDDAAHPD---HLRRLVGEPDWFGPGSRIIITTRNEH-----LLKLHPVKKVYKLEALTYDEAFRLLC-------LKAFD 146 (377)
Q Consensus 82 LDdv~~~~---~~~~l~~~l~~~~~gs~IIvTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~L~~-------~~~~~ 146 (377)
||+++... ..+.|...+.....+.++|+||.... +..+ ...+++++++.++-.+++. ..+..
T Consensus 111 iDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~ 187 (324)
T 3u61_B 111 IDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDEDKIEMMKQMIRRLTEICKH 187 (324)
T ss_dssp EESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998743 33333332221134567888876543 2222 3578999999888543332 22211
Q ss_pred CCCCchhHHHHHHHHHHHhCCCCchhh
Q 040234 147 THKPLEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 147 ~~~~~~~~~~~~~~I~~~c~G~~lpla 173 (377)
.....+. .+....|++.++| ..-.
T Consensus 188 ~~~~~~~-~~~~~~l~~~~~g--d~R~ 211 (324)
T 3u61_B 188 EGIAIAD-MKVVAALVKKNFP--DFRK 211 (324)
T ss_dssp HTCCBSC-HHHHHHHHHHTCS--CTTH
T ss_pred cCCCCCc-HHHHHHHHHhCCC--CHHH
Confidence 1111110 2567788888888 5544
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.14 E-value=0.0057 Score=55.51 Aligned_cols=143 Identities=11% Similarity=0.070 Sum_probs=75.3
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.+++.....| +. + +...+.. ...+. ........+.......+.+|
T Consensus 57 p~GtGKT~la~ala~~~~~~~-----i~-v--------~~~~l~~----~~~g~------~~~~~~~~f~~a~~~~p~il 112 (301)
T 3cf0_A 57 PPGCGKTLLAKAIANECQANF-----IS-I--------KGPELLT----MWFGE------SEANVREIFDKARQAAPCVL 112 (301)
T ss_dssp SSSSSHHHHHHHHHHHTTCEE-----EE-E--------CHHHHHH----HHHTT------CTTHHHHHHHHHHHTCSEEE
T ss_pred CCCcCHHHHHHHHHHHhCCCE-----EE-E--------EhHHHHh----hhcCc------hHHHHHHHHHHHHhcCCeEE
Confidence 379999999999998764322 11 1 2222222 11121 11222333444444567899
Q ss_pred EEeCCCChh----------------hhhHhhCCCCC--CCCCCeEEEEecchhHH-hh-C---CCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHPD----------------HLRRLVGEPDW--FGPGSRIIITTRNEHLL-KL-H---PVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~~----------------~~~~l~~~l~~--~~~gs~IIvTTR~~~v~-~~-~---~~~~~~~l~~L~~~ea~ 137 (377)
+||+++... ....++..+.. ...+..||.||...... .. . .-...+.++..+.++-.
T Consensus 113 ~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~ 192 (301)
T 3cf0_A 113 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 192 (301)
T ss_dssp EECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred EEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHH
Confidence 999997421 01222211110 12345677777654321 11 1 22457889999999988
Q ss_pred HHHHHHhcCCCCC-chhHHHHHHHHHHHhCCCCchhh
Q 040234 138 RLLCLKAFDTHKP-LEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 138 ~L~~~~~~~~~~~-~~~~~~~~~~I~~~c~G~~lpla 173 (377)
+++.......... ... ...+++.+.| .|-+
T Consensus 193 ~il~~~l~~~~~~~~~~----~~~la~~~~g--~sg~ 223 (301)
T 3cf0_A 193 AILKANLRKSPVAKDVD----LEFLAKMTNG--FSGA 223 (301)
T ss_dssp HHHHHHHTTSCBCSSCC----HHHHHHTCSS--CCHH
T ss_pred HHHHHHHccCCCCccch----HHHHHHHcCC--CCHH
Confidence 9887776332211 112 2356666777 6554
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.09 E-value=0.0049 Score=57.44 Aligned_cols=99 Identities=9% Similarity=-0.024 Sum_probs=54.2
Q ss_pred cCceEEEEEeCCCCh-------------hhhhHhhCCCC----CCCCCCeEEEEecchh-----HHhhCCCCCeeecCCC
Q 040234 74 RRKKVLVVIDDAAHP-------------DHLRRLVGEPD----WFGPGSRIIITTRNEH-----LLKLHPVKKVYKLEAL 131 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~-------------~~~~~l~~~l~----~~~~gs~IIvTTR~~~-----v~~~~~~~~~~~l~~L 131 (377)
..++.+|+||+++.. .....++..+. ....+..||.||.... +.. .-...+.+...
T Consensus 174 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p 251 (357)
T 3d8b_A 174 CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLP 251 (357)
T ss_dssp HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCC
T ss_pred hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCc
Confidence 346789999998432 11222221111 1123345565665432 222 22356788889
Q ss_pred ChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchh-hHHHHH
Q 040234 132 TYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTL-NALMSV 178 (377)
Q Consensus 132 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lpl-al~~~~ 178 (377)
+.++..+++...+....... ..+....|++.+.| ..- .+..+.
T Consensus 252 ~~~~r~~il~~~~~~~~~~l--~~~~l~~la~~t~G--~s~~dl~~l~ 295 (357)
T 3d8b_A 252 EASARKQIVINLMSKEQCCL--SEEEIEQIVQQSDA--FSGADMTQLC 295 (357)
T ss_dssp CHHHHHHHHHHHHHTSCBCC--CHHHHHHHHHHTTT--CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCc--cHHHHHHHHHHcCC--CCHHHHHHHH
Confidence 99999998887764322111 13567788888887 543 344433
No 43
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.05 E-value=0.0035 Score=57.88 Aligned_cols=95 Identities=11% Similarity=0.135 Sum_probs=55.1
Q ss_pred ceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchh-HHhhC-CCCCeeecCCCChhhhHHHHHHHhcCCCCCc
Q 040234 76 KKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEH-LLKLH-PVKKVYKLEALTYDEAFRLLCLKAFDTHKPL 151 (377)
Q Consensus 76 k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 151 (377)
.+-++|+|+++. .+..+.|+..+..-....++|++|.... +...+ .....+.+.+++.++..+.+...+....-..
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 189 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467899999865 2233333322211134556776665432 21111 2245788999999999988877663222111
Q ss_pred hhHHHHHHHHHHHhCCCCchhhH
Q 040234 152 EEYVELAESVVRICHCQKSTLNA 174 (377)
Q Consensus 152 ~~~~~~~~~I~~~c~G~~lplal 174 (377)
.++..+.|++.++| .+-.+
T Consensus 190 --~~~~~~~i~~~s~G--~~r~~ 208 (340)
T 1sxj_C 190 --SPNAEKALIELSNG--DMRRV 208 (340)
T ss_dssp --CHHHHHHHHHHHTT--CHHHH
T ss_pred --CHHHHHHHHHHcCC--CHHHH
Confidence 13567788888998 66543
No 44
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.98 E-value=0.0048 Score=58.17 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=33.9
Q ss_pred CeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchh-hHHHH
Q 040234 124 KVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTL-NALMS 177 (377)
Q Consensus 124 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lpl-al~~~ 177 (377)
..+.++..+.++-.+++...+........ .+....|++.+.| ..- ++..+
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g--~~~~~l~~L 325 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDG--YSGSDLTAL 325 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTT--CCHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCC--CCHHHHHHH
Confidence 46888999999999999887744322211 3466788999888 655 44433
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.98 E-value=0.014 Score=52.54 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=40.7
Q ss_pred CCeEEEEecch-----hHHhhCCCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchh-hHHHH
Q 040234 104 GSRIIITTRNE-----HLLKLHPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTL-NALMS 177 (377)
Q Consensus 104 gs~IIvTTR~~-----~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lpl-al~~~ 177 (377)
+..||.||... .+..++ ...+.++..+.++-.+++...+....... ..+....|++.+.| .+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g--~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDG--YSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTT--CCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCC--CCHHHHHHH
Confidence 34566677653 223322 35677888888888888877663322111 13456788899988 775 44333
No 46
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.029 Score=52.77 Aligned_cols=142 Identities=14% Similarity=0.132 Sum_probs=76.3
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhccccc-CHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG-SVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
++|+|||.||+.++++....| +..+.+...+.+. .....++ +.+...-...+.+
T Consensus 190 PPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~vGese~~vr---------------------~lF~~Ar~~aP~I 244 (405)
T 4b4t_J 190 PPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYIGEGSRMVR---------------------ELFVMAREHAPSI 244 (405)
T ss_dssp CSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSSTTHHHHHHH---------------------HHHHHHHHTCSEE
T ss_pred CCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccccchHHHHHH---------------------HHHHHHHHhCCce
Confidence 589999999999999766554 1121222211110 1111112 2222222456889
Q ss_pred EEEeCCCChh----------------hhhHhhCCCCC--CCCCCeEEEEecchhH-----HhhCCCCCeeecCCCChhhh
Q 040234 80 VVIDDAAHPD----------------HLRRLVGEPDW--FGPGSRIIITTRNEHL-----LKLHPVKKVYKLEALTYDEA 136 (377)
Q Consensus 80 LVLDdv~~~~----------------~~~~l~~~l~~--~~~gs~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea 136 (377)
|.+|+++... .+..++..+.. ...+-.||.||..... .+.-.-...+.++..+.++-
T Consensus 245 IFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R 324 (405)
T 4b4t_J 245 IFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAAR 324 (405)
T ss_dssp EEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHH
Confidence 9999987420 12223222211 1233356667764432 22123467889999999988
Q ss_pred HHHHHHHhcCCCC-CchhHHHHHHHHHHHhCCCCchhh
Q 040234 137 FRLLCLKAFDTHK-PLEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 137 ~~L~~~~~~~~~~-~~~~~~~~~~~I~~~c~G~~lpla 173 (377)
.++|..+...-.. ...+ ...|++.+.| ..-|
T Consensus 325 ~~Il~~~~~~~~l~~dvd----l~~lA~~t~G--~SGA 356 (405)
T 4b4t_J 325 AEILRIHSRKMNLTRGIN----LRKVAEKMNG--CSGA 356 (405)
T ss_dssp HHHHHHHHTTSBCCSSCC----HHHHHHHCCS--CCHH
T ss_pred HHHHHHHhcCCCCCccCC----HHHHHHHCCC--CCHH
Confidence 9998877633221 1112 4578888888 5443
No 47
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0026 Score=57.91 Aligned_cols=121 Identities=11% Similarity=-0.004 Sum_probs=69.1
Q ss_pred CCCCcHHHHHHHHHchh---ccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCce
Q 040234 1 MGGLGKTTLARVVYDLI---SHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKK 77 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~---~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~ 77 (377)
..|+|||++|+.+++.. +...++...+...+... .+.. .+++.+.+.... ..+++
T Consensus 26 p~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~----~id~-ir~li~~~~~~p-----------------~~~~~ 83 (305)
T 2gno_A 26 EDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENI----GIDD-IRTIKDFLNYSP-----------------ELYTR 83 (305)
T ss_dssp SSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCB----CHHH-HHHHHHHHTSCC-----------------SSSSS
T ss_pred CCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCC----CHHH-HHHHHHHHhhcc-----------------ccCCc
Confidence 37999999999998742 22233444443111111 2222 233433321110 02356
Q ss_pred EEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch-hHHhhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 78 VLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE-HLLKLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 78 ~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~-~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
-++|+|+++. .+..+.|+..+..-.+.+.+|++|.++ .+...+... .+++.++++++..+.+.+..
T Consensus 84 kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 84 KYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred eEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 7899999976 334455544433224566777766543 333333233 89999999999999998776
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.49 E-value=0.0058 Score=54.19 Aligned_cols=72 Identities=13% Similarity=0.247 Sum_probs=41.0
Q ss_pred cCceEEEEEeCCCChh-----------------hhhHhhCCCCCC---CCCCeEEEEecchhH-----HhhCCCCCeeec
Q 040234 74 RRKKVLVVIDDAAHPD-----------------HLRRLVGEPDWF---GPGSRIIITTRNEHL-----LKLHPVKKVYKL 128 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~~-----------------~~~~l~~~l~~~---~~gs~IIvTTR~~~v-----~~~~~~~~~~~l 128 (377)
..++.+|+||+++... .+..++..+... .....||.||..... .....-...+.+
T Consensus 101 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i 180 (268)
T 2r62_A 101 KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLV 180 (268)
T ss_dssp HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBC
T ss_pred hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEe
Confidence 3466899999996421 133344333221 112356666665432 111122356788
Q ss_pred CCCChhhhHHHHHHHhc
Q 040234 129 EALTYDEAFRLLCLKAF 145 (377)
Q Consensus 129 ~~L~~~ea~~L~~~~~~ 145 (377)
+..+.++-.+++.....
T Consensus 181 ~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 181 DKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CCCCTTTHHHHHHHHTS
T ss_pred cCcCHHHHHHHHHHHHh
Confidence 89999999998877663
No 49
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.071 Score=50.93 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhccccc-CHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG-SVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
++|+|||.||+.++++....| +..+.+...+.+. .....+ .+.+...-...+.+
T Consensus 251 PPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~vGesek~i---------------------r~lF~~Ar~~aP~I 305 (467)
T 4b4t_H 251 PPGTGKTLCARAVANRTDATF----IRVIGSELVQKYVGEGARMV---------------------RELFEMARTKKACI 305 (467)
T ss_dssp CTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSSSHHHHHH---------------------HHHHHHHHHTCSEE
T ss_pred CCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccCCHHHHHH---------------------HHHHHHHHhcCCce
Confidence 479999999999999776553 1111222211110 111111 12222223456899
Q ss_pred EEEeCCCChh----------------hhhHhhCCCCCC--CCCCeEEEEecchhH-----HhhCCCCCeeecCCCChhhh
Q 040234 80 VVIDDAAHPD----------------HLRRLVGEPDWF--GPGSRIIITTRNEHL-----LKLHPVKKVYKLEALTYDEA 136 (377)
Q Consensus 80 LVLDdv~~~~----------------~~~~l~~~l~~~--~~gs~IIvTTR~~~v-----~~~~~~~~~~~l~~L~~~ea 136 (377)
|++|+++... .+..++..+... ..+-.||.||..... .+.-.-...+.++..+.++-
T Consensus 306 IfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R 385 (467)
T 4b4t_H 306 IFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGR 385 (467)
T ss_dssp EEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHH
T ss_pred EeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHH
Confidence 9999987420 111222221111 223345666654322 22113467788888898888
Q ss_pred HHHHHHHhcCCCC-CchhHHHHHHHHHHHhCC
Q 040234 137 FRLLCLKAFDTHK-PLEEYVELAESVVRICHC 167 (377)
Q Consensus 137 ~~L~~~~~~~~~~-~~~~~~~~~~~I~~~c~G 167 (377)
.++|..+...-.. ...+ ...|++.+.|
T Consensus 386 ~~Ilk~~l~~~~l~~dvd----l~~LA~~T~G 413 (467)
T 4b4t_H 386 ANIFRIHSKSMSVERGIR----WELISRLCPN 413 (467)
T ss_dssp HHHHHHHHTTSCBCSSCC----HHHHHHHCCS
T ss_pred HHHHHHHhcCCCCCCCCC----HHHHHHHCCC
Confidence 8998877633221 1112 3567888888
No 50
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.26 E-value=0.031 Score=50.28 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=16.4
Q ss_pred CeeecCCCChhhhHHHHHH
Q 040234 124 KVYKLEALTYDEAFRLLCL 142 (377)
Q Consensus 124 ~~~~l~~L~~~ea~~L~~~ 142 (377)
..+.+++++.++..+++.+
T Consensus 195 ~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 195 IRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred ceEEcCCcCHHHHHHHHHh
Confidence 5689999999999998874
No 51
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.22 E-value=0.0027 Score=51.28 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
.|+|||||++.++.....
T Consensus 45 ~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 45 EGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp STTTTCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 699999999999996543
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.033 Score=53.12 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccC-HHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGS-VISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
++|+|||.||+.++++....| +..+.+...+.+.+ ....+ ...+...-...+.+
T Consensus 223 PPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~~Gese~~i---------------------r~~F~~A~~~~P~I 277 (437)
T 4b4t_L 223 PPGTGKTLLAKAVAATIGANF----IFSPASGIVDKYIGESARII---------------------REMFAYAKEHEPCI 277 (437)
T ss_dssp CTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSSSSHHHHHH---------------------HHHHHHHHHSCSEE
T ss_pred CCCCcHHHHHHHHHHHhCCCE----EEEehhhhccccchHHHHHH---------------------HHHHHHHHhcCCce
Confidence 589999999999999766543 22213222211101 11111 11222222456899
Q ss_pred EEEeCCCChh----------------hhhHhhCCCCC--CCCCCeEEEEecchhHHhh-C--C--CCCeeecCCCChhhh
Q 040234 80 VVIDDAAHPD----------------HLRRLVGEPDW--FGPGSRIIITTRNEHLLKL-H--P--VKKVYKLEALTYDEA 136 (377)
Q Consensus 80 LVLDdv~~~~----------------~~~~l~~~l~~--~~~gs~IIvTTR~~~v~~~-~--~--~~~~~~l~~L~~~ea 136 (377)
|.+|+++... .+..|+..+.. ...+..||.||........ + + -...+.++..+.++-
T Consensus 278 ifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R 357 (437)
T 4b4t_L 278 IFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357 (437)
T ss_dssp EEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHH
T ss_pred eeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHH
Confidence 9999987410 12223322211 1234467777765533221 1 1 245678888888888
Q ss_pred HHHHHHHhcCCCC-CchhHHHHHHHHHHHhCCCCchhh
Q 040234 137 FRLLCLKAFDTHK-PLEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 137 ~~L~~~~~~~~~~-~~~~~~~~~~~I~~~c~G~~lpla 173 (377)
.++|..+...-.. ...+ ...|++.+.| ..-|
T Consensus 358 ~~Il~~~~~~~~~~~d~d----l~~lA~~t~G--~sGA 389 (437)
T 4b4t_L 358 LEIFKIHTAKVKKTGEFD----FEAAVKMSDG--FNGA 389 (437)
T ss_dssp HHHHHHHHHTSCBCSCCC----HHHHHHTCCS--CCHH
T ss_pred HHHHHHHhcCCCCCcccC----HHHHHHhCCC--CCHH
Confidence 8888776643221 1112 3567888888 5433
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.15 E-value=0.0082 Score=58.34 Aligned_cols=139 Identities=13% Similarity=0.088 Sum_probs=70.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++++....| +.+. ... +...+ . ..........+.....+++.+|
T Consensus 246 ppGtGKT~lAraia~~~~~~f---v~vn-~~~----------l~~~~----~------g~~~~~~~~~f~~A~~~~p~iL 301 (489)
T 3hu3_A 246 PPGTGKTLIARAVANETGAFF---FLIN-GPE----------IMSKL----A------GESESNLRKAFEEAEKNAPAII 301 (489)
T ss_dssp STTSSHHHHHHHHHHHCSSEE---EEEE-HHH----------HHTSC----T------THHHHHHHHHHHHHHHTCSEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCE---EEEE-chH----------hhhhh----c------chhHHHHHHHHHHHHhcCCcEE
Confidence 379999999999998663322 1121 211 11000 0 0011112233344445667899
Q ss_pred EEeCCCCh-------------hhhhHh---hCCCCCCCCCCeEEEEecchh-HHhh----CCCCCeeecCCCChhhhHHH
Q 040234 81 VIDDAAHP-------------DHLRRL---VGEPDWFGPGSRIIITTRNEH-LLKL----HPVKKVYKLEALTYDEAFRL 139 (377)
Q Consensus 81 VLDdv~~~-------------~~~~~l---~~~l~~~~~gs~IIvTTR~~~-v~~~----~~~~~~~~l~~L~~~ea~~L 139 (377)
+||+++.. .....| +..+.. ..+..||.||.... +... ..-...+.++..+.++-.++
T Consensus 302 fLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~-~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~I 380 (489)
T 3hu3_A 302 FIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (489)
T ss_dssp EEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT-TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred EecchhhhccccccccchHHHHHHHHHHHHhhcccc-CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHH
Confidence 99998321 111222 222111 23445666666542 1111 12244688999999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 140 LCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
|..++........ ....++++.+.|
T Consensus 381 L~~~~~~~~l~~~---~~l~~la~~t~g 405 (489)
T 3hu3_A 381 LQIHTKNMKLADD---VDLEQVANETHG 405 (489)
T ss_dssp HHHHTTTSCBCTT---CCHHHHHHTCTT
T ss_pred HHHHHhcCCCcch---hhHHHHHHHccC
Confidence 9887643221111 113456666666
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.12 E-value=0.012 Score=53.21 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+|||+||+.+++....
T Consensus 55 ~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSSSSHHHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHcC
Confidence 3799999999999996543
No 55
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.06 E-value=0.028 Score=54.32 Aligned_cols=142 Identities=17% Similarity=0.108 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++.+....| +..+.+......... ........+.+.....+.+|
T Consensus 57 ppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~~g~--------------------~~~~~r~lf~~A~~~~p~IL 112 (476)
T 2ce7_A 57 PPGTGKTLLARAVAGEANVPF----FHISGSDFVELFVGV--------------------GAARVRDLFAQAKAHAPCIV 112 (476)
T ss_dssp CTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCCTTH--------------------HHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHHhcc--------------------cHHHHHHHHHHHHhcCCCEE
Confidence 479999999999998654332 111122211110000 11112233444445678899
Q ss_pred EEeCCCCh----------------hhhhHhhCCCCC--CCCCCeEEEEecchhHHh-h-C---CCCCeeecCCCChhhhH
Q 040234 81 VIDDAAHP----------------DHLRRLVGEPDW--FGPGSRIIITTRNEHLLK-L-H---PVKKVYKLEALTYDEAF 137 (377)
Q Consensus 81 VLDdv~~~----------------~~~~~l~~~l~~--~~~gs~IIvTTR~~~v~~-~-~---~~~~~~~l~~L~~~ea~ 137 (377)
+||+++.. ..+..++..+.. ...+..||.||....... . . .-...+.++..+.++-.
T Consensus 113 fIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~ 192 (476)
T 2ce7_A 113 FIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRK 192 (476)
T ss_dssp EEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred EEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHH
Confidence 99998541 122333322110 123446677776654321 1 1 12347788888888888
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCch
Q 040234 138 RLLCLKAFDTHKPLEEYVELAESVVRICHCQKST 171 (377)
Q Consensus 138 ~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lp 171 (377)
+++..++....-.... ....|++.+.| ..
T Consensus 193 ~Il~~~~~~~~l~~~v---~l~~la~~t~G--~s 221 (476)
T 2ce7_A 193 KILEIHTRNKPLAEDV---NLEIIAKRTPG--FV 221 (476)
T ss_dssp HHHHHHHTTSCBCTTC---CHHHHHHTCTT--CC
T ss_pred HHHHHHHHhCCCcchh---hHHHHHHhcCC--Cc
Confidence 8887666332111111 13447777888 66
No 56
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.06 E-value=0.013 Score=48.31 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+|||+||+.+++....
T Consensus 51 ~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CGGGCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 3699999999999986533
No 57
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.06 E-value=0.0031 Score=53.19 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=28.3
Q ss_pred hHHHHHHHhcCceE-EEEEeCCCC--------hhhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 65 GINMLRVRLRRKKV-LVVIDDAAH--------PDHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 65 ~~~~l~~~l~~k~~-LLVLDdv~~--------~~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
..+..++.+.+.+| |||||++-. .+++-.++.. ...+..||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC
Confidence 34445566655544 999999732 2333333222 24567899999985
No 58
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.99 E-value=0.018 Score=51.98 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
++|+|||+||+.+++....
T Consensus 44 ppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CTTSCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 4799999999999997743
No 59
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.98 E-value=0.0082 Score=50.72 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=19.6
Q ss_pred CCCCcHHHHHHHHHchhccccccceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFL 27 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~ 27 (377)
.+|+|||+||+.+++.........+++
T Consensus 62 ~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 379999999999999765543334444
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.97 E-value=0.0088 Score=61.54 Aligned_cols=117 Identities=16% Similarity=0.166 Sum_probs=59.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.+++.....-...+.+. ++......... .....+.+++ ...-+|
T Consensus 529 p~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~---------------------~~~l~~~~~~---~~~~vl 583 (758)
T 3pxi_A 529 PTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS---------------------GGQLTEKVRR---KPYSVV 583 (758)
T ss_dssp CTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC------------------------CHHHHHH---CSSSEE
T ss_pred CCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc---------------------cchhhHHHHh---CCCeEE
Confidence 3799999999999996533222223333 44433211000 0111112221 223489
Q ss_pred EEeCCCCh--hhhhHhhCCCCC-----------CCCCCeEEEEecc-----------------hhHHhhCCCCCeeecCC
Q 040234 81 VIDDAAHP--DHLRRLVGEPDW-----------FGPGSRIIITTRN-----------------EHLLKLHPVKKVYKLEA 130 (377)
Q Consensus 81 VLDdv~~~--~~~~~l~~~l~~-----------~~~gs~IIvTTR~-----------------~~v~~~~~~~~~~~l~~ 130 (377)
+||+++.. +....|+..+.. .....+||+||.. +.+..++ ...+.+.+
T Consensus 584 ~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~ 661 (758)
T 3pxi_A 584 LLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRI--DEIIVFHS 661 (758)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTS--SEEEECC-
T ss_pred EEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhC--CeEEecCC
Confidence 99999752 333333221111 1235588888872 1112222 35788999
Q ss_pred CChhhhHHHHHHHh
Q 040234 131 LTYDEAFRLLCLKA 144 (377)
Q Consensus 131 L~~~ea~~L~~~~~ 144 (377)
|+.++-.+++....
T Consensus 662 l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 662 LEKKHLTEIVSLMS 675 (758)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888876654
No 61
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.026 Score=53.65 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.5
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
++|+|||.||+.++++..-.|
T Consensus 214 PPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 214 PPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CTTTTHHHHHHHHHHHHTCEE
T ss_pred CCCCCHHHHHHHHHHHhCCCe
Confidence 589999999999999765443
No 62
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.87 E-value=0.014 Score=51.72 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||+||+.+++...
T Consensus 38 ~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 38 RGTGKELIASRLHYLSS 54 (265)
T ss_dssp TTSCHHHHHHHHHHTST
T ss_pred CCCcHHHHHHHHHHhcC
Confidence 79999999999998543
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.87 E-value=0.05 Score=55.87 Aligned_cols=68 Identities=9% Similarity=0.059 Sum_probs=40.2
Q ss_pred CceEEEEEeCCCCh----------hh-hhHhhCCCCCCCCCCeEEEEecchhHHhhC-------CCCCeeecCCCChhhh
Q 040234 75 RKKVLVVIDDAAHP----------DH-LRRLVGEPDWFGPGSRIIITTRNEHLLKLH-------PVKKVYKLEALTYDEA 136 (377)
Q Consensus 75 ~k~~LLVLDdv~~~----------~~-~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~-------~~~~~~~l~~L~~~ea 136 (377)
.++.+|+||++... .+ .+.+.+.+. ..+..+|.+|......... .....+.++..+.++.
T Consensus 277 ~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~ 354 (758)
T 1r6b_X 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHH
T ss_pred cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHH
Confidence 35789999999743 12 233444433 2345666666544322111 1123588999999999
Q ss_pred HHHHHHHh
Q 040234 137 FRLLCLKA 144 (377)
Q Consensus 137 ~~L~~~~~ 144 (377)
.+++....
T Consensus 355 ~~il~~l~ 362 (758)
T 1r6b_X 355 VQIINGLK 362 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 64
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.027 Score=53.63 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=71.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhccccc-CHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG-SVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
++|+|||.||+.++++....| +..+.+.....+. .....++.++ ...-...+.+
T Consensus 223 PPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~vGese~~ir~lF---------------------~~A~~~aP~I 277 (434)
T 4b4t_M 223 PPGTGKTLLARACAAQTNATF----LKLAAPQLVQMYIGEGAKLVRDAF---------------------ALAKEKAPTI 277 (434)
T ss_dssp CTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSCSSHHHHHHHHHH---------------------HHHHHHCSEE
T ss_pred cCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhcccchHHHHHHHHH---------------------HHHHhcCCeE
Confidence 589999999999999765543 1221222211110 1112222222 1112335789
Q ss_pred EEEeCCCCh-------h---------hhhHhhCCCCCC--CCCCeEEEEecchhHHh-hC----CCCCeeecCCCChhhh
Q 040234 80 VVIDDAAHP-------D---------HLRRLVGEPDWF--GPGSRIIITTRNEHLLK-LH----PVKKVYKLEALTYDEA 136 (377)
Q Consensus 80 LVLDdv~~~-------~---------~~~~l~~~l~~~--~~gs~IIvTTR~~~v~~-~~----~~~~~~~l~~L~~~ea 136 (377)
|.+|+++.. . .+..++..+... ..+-.||.||....... .+ .-...+.++..+.++-
T Consensus 278 ifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R 357 (434)
T 4b4t_M 278 IFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSR 357 (434)
T ss_dssp EEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHH
T ss_pred EeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHH
Confidence 999998531 0 122233222211 22335566776543322 11 2245788888888888
Q ss_pred HHHHHHHhcCCCC-CchhHHHHHHHHHHHhCC
Q 040234 137 FRLLCLKAFDTHK-PLEEYVELAESVVRICHC 167 (377)
Q Consensus 137 ~~L~~~~~~~~~~-~~~~~~~~~~~I~~~c~G 167 (377)
.++|..+...-.. ...+ ...|++.+.|
T Consensus 358 ~~Il~~~~~~~~~~~dvd----l~~lA~~t~G 385 (434)
T 4b4t_M 358 AQILQIHSRKMTTDDDIN----WQELARSTDE 385 (434)
T ss_dssp HHHHHHHHHHSCBCSCCC----HHHHHHHCSS
T ss_pred HHHHHHHhcCCCCCCcCC----HHHHHHhCCC
Confidence 8888766532211 1112 3568888888
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.68 E-value=0.14 Score=49.06 Aligned_cols=93 Identities=11% Similarity=0.011 Sum_probs=53.6
Q ss_pred EEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEE-EE---------ec----chhHH-hhCCCCCeeecCCCChhhhHHHH
Q 040234 78 VLVVIDDAAH--PDHLRRLVGEPDWFGPGSRII-IT---------TR----NEHLL-KLHPVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 78 ~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~II-vT---------TR----~~~v~-~~~~~~~~~~l~~L~~~ea~~L~ 140 (377)
-++++|++.. .+..+.|+..+...... .+| .| |. ...+. ........+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 3899999975 45566666555432333 344 44 22 11111 11122445799999999999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHh-CCCCchhhHH
Q 040234 141 CLKAFDTHKPLEEYVELAESVVRIC-HCQKSTLNAL 175 (377)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~I~~~c-~G~~lplal~ 175 (377)
..++...... -.++.+..|++.+ +| .|....
T Consensus 376 ~~~~~~~~~~--~~~~~~~~i~~~a~~g--~~r~a~ 407 (456)
T 2c9o_A 376 KIRAQTEGIN--ISEEALNHLGEIGTKT--TLRYSV 407 (456)
T ss_dssp HHHHHHHTCC--BCHHHHHHHHHHHHHS--CHHHHH
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHccCC--CHHHHH
Confidence 8776311111 1135667788887 67 666544
No 66
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.68 E-value=0.011 Score=47.22 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||+||+.+++..
T Consensus 33 ~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 33 PGTGRMTGARYLHQFG 48 (145)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHhC
Confidence 7999999999999843
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.55 E-value=0.028 Score=54.35 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=36.6
Q ss_pred cCceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhH---HhhC----CCCCeeecCCCChhhhHHHHHHHh
Q 040234 74 RRKKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHL---LKLH----PVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 74 ~~k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v---~~~~----~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
..++.+|++| ...+..+.|.+.+. ....++|.+|..... .... .....+.+++.+.++..+++....
T Consensus 265 ~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 265 QAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 3567899999 33333444555543 223456665554331 1111 123468999999999999998765
No 68
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.075 Score=50.28 Aligned_cols=138 Identities=19% Similarity=0.131 Sum_probs=71.7
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhccccc-CHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG-SVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVL 79 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~L 79 (377)
++|+|||.||+.++++....|- ..+.+...+.+. .....++.++ ...-...+.+
T Consensus 224 PPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~sk~vGesek~ir~lF---------------------~~Ar~~aP~I 278 (437)
T 4b4t_I 224 APGTGKTLLAKAVANQTSATFL----RIVGSELIQKYLGDGPRLCRQIF---------------------KVAGENAPSI 278 (437)
T ss_dssp STTTTHHHHHHHHHHHHTCEEE----EEESGGGCCSSSSHHHHHHHHHH---------------------HHHHHTCSEE
T ss_pred CCCchHHHHHHHHHHHhCCCEE----EEEHHHhhhccCchHHHHHHHHH---------------------HHHHhcCCcE
Confidence 4899999999999997665431 111222211110 1112222222 2222345789
Q ss_pred EEEeCCCCh----------------hhhhHhhCCCCC--CCCCCeEEEEecchhHHhh-C----CCCCeeecCCCChhhh
Q 040234 80 VVIDDAAHP----------------DHLRRLVGEPDW--FGPGSRIIITTRNEHLLKL-H----PVKKVYKLEALTYDEA 136 (377)
Q Consensus 80 LVLDdv~~~----------------~~~~~l~~~l~~--~~~gs~IIvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea 136 (377)
|.+|+++.. ..+..++..+.. ...+-.||.||........ + .-...+.++.-+.++-
T Consensus 279 IfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R 358 (437)
T 4b4t_I 279 VFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTK 358 (437)
T ss_dssp EEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHH
T ss_pred EEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHH
Confidence 999997631 012222222111 1233456667765443221 1 1245677888888888
Q ss_pred HHHHHHHhcCCCC-CchhHHHHHHHHHHHhCC
Q 040234 137 FRLLCLKAFDTHK-PLEEYVELAESVVRICHC 167 (377)
Q Consensus 137 ~~L~~~~~~~~~~-~~~~~~~~~~~I~~~c~G 167 (377)
.++|..+...-.- ...+ ...|++.+.|
T Consensus 359 ~~Il~~~l~~~~l~~dvd----l~~LA~~T~G 386 (437)
T 4b4t_I 359 KKILGIHTSKMNLSEDVN----LETLVTTKDD 386 (437)
T ss_dssp HHHHHHHHTTSCBCSCCC----HHHHHHHCCS
T ss_pred HHHHHHHhcCCCCCCcCC----HHHHHHhCCC
Confidence 8888777633221 1112 4567888888
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.47 E-value=0.057 Score=56.29 Aligned_cols=67 Identities=15% Similarity=0.013 Sum_probs=34.6
Q ss_pred CceEEEEEeCCCChh----------hhhHhhCCCCCCCCCCeEEEEecchhH-----HhhC-CCCCeeecCCCChhhhHH
Q 040234 75 RKKVLVVIDDAAHPD----------HLRRLVGEPDWFGPGSRIIITTRNEHL-----LKLH-PVKKVYKLEALTYDEAFR 138 (377)
Q Consensus 75 ~k~~LLVLDdv~~~~----------~~~~l~~~l~~~~~gs~IIvTTR~~~v-----~~~~-~~~~~~~l~~L~~~ea~~ 138 (377)
+++.+|+||++.... ..+.+.+.+. ..+..+|.+|..... ...+ .....+.+++++.++..+
T Consensus 262 ~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~ 339 (854)
T 1qvr_A 262 QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETIS 339 (854)
T ss_dssp CSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHH
T ss_pred CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHH
Confidence 367899999997532 1111222221 123345555543322 1111 223458899999999999
Q ss_pred HHHHH
Q 040234 139 LLCLK 143 (377)
Q Consensus 139 L~~~~ 143 (377)
++...
T Consensus 340 iL~~~ 344 (854)
T 1qvr_A 340 ILRGL 344 (854)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98644
No 70
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.27 E-value=0.038 Score=47.01 Aligned_cols=15 Identities=40% Similarity=0.036 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
.+|+||||||..++.
T Consensus 28 ~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 28 PYASGKTTLALQTGL 42 (220)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999987
No 71
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.17 E-value=0.084 Score=46.24 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||||+.+++....
T Consensus 53 ~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CTTSCHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC
Confidence 3799999999999986543
No 72
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.14 E-value=0.052 Score=49.18 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||++|+.+++..
T Consensus 34 ~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 34 SGTGKELVARALHACS 49 (304)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHhC
Confidence 7999999999999844
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.13 E-value=0.23 Score=50.92 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=38.6
Q ss_pred HHHhcCceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhH---HhhC----CCCCeeecCCCChhhhHHHHHH
Q 040234 70 RVRLRRKKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHL---LKLH----PVKKVYKLEALTYDEAFRLLCL 142 (377)
Q Consensus 70 ~~~l~~k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v---~~~~----~~~~~~~l~~L~~~ea~~L~~~ 142 (377)
......++.+|++| ...+....+.+.+. ....++|.||..... .... .....+.++..+.++..+++..
T Consensus 261 ~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~ 336 (758)
T 3pxi_A 261 DEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQG 336 (758)
T ss_dssp HHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence 33334677899999 33333344555543 234566666654331 0100 1125689999999999999986
Q ss_pred Hh
Q 040234 143 KA 144 (377)
Q Consensus 143 ~~ 144 (377)
..
T Consensus 337 ~~ 338 (758)
T 3pxi_A 337 LR 338 (758)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 74
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.08 E-value=0.019 Score=59.01 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+|||+||+.++++...+| +..+.....+. ..........+.+.......+.+|
T Consensus 246 PPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk--------------------~~gese~~lr~lF~~A~~~~PsII 301 (806)
T 3cf2_A 246 PPGTGKTLIARAVANETGAFF----FLINGPEIMSK--------------------LAGESESNLRKAFEEAEKNAPAII 301 (806)
T ss_dssp CTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSS--------------------CTTHHHHHHHHHHHHHTTSCSEEE
T ss_pred CCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhcc--------------------cchHHHHHHHHHHHHHHHcCCeEE
Confidence 479999999999999765443 22212111100 001122223333444445678999
Q ss_pred EEeCCCChh-------------hhhHhhCCCCCC--CCCCeEEEEecchhH-HhhC----CCCCeeecCCCChhhhHHHH
Q 040234 81 VIDDAAHPD-------------HLRRLVGEPDWF--GPGSRIIITTRNEHL-LKLH----PVKKVYKLEALTYDEAFRLL 140 (377)
Q Consensus 81 VLDdv~~~~-------------~~~~l~~~l~~~--~~gs~IIvTTR~~~v-~~~~----~~~~~~~l~~L~~~ea~~L~ 140 (377)
+||+++... ....|+..+... ..+-.||.||..... -..+ .-...++++..+.++-.++|
T Consensus 302 fIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL 381 (806)
T 3cf2_A 302 FIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381 (806)
T ss_dssp EEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHH
T ss_pred EEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHH
Confidence 999986420 122222221111 123345556654422 1111 22457888888888888888
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHhCCCCchhh
Q 040234 141 CLKAFDTHKPLEEYVELAESVVRICHCQKSTLN 173 (377)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lpla 173 (377)
..+......... .....|++.+.| ..-|
T Consensus 382 ~~~l~~~~~~~d---vdl~~lA~~T~G--fsga 409 (806)
T 3cf2_A 382 QIHTKNMKLADD---VDLEQVANETHG--HVGA 409 (806)
T ss_dssp HHTCSSSEECTT---CCHHHHHHHCCS--CCHH
T ss_pred HHHhcCCCCCcc---cCHHHHHHhcCC--CCHH
Confidence 766532211111 124567888877 5443
No 75
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.07 E-value=0.02 Score=52.10 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
++|+|||+||.+++.. .-...+|+. +.... .+ .. ...+.+...+.+.+.+...+ ||
T Consensus 131 pPGsGKTtLAlqlA~~---~G~~VlyIs-~~~eE----~v-----------~~----~~~~le~~l~~i~~~l~~~~-LL 186 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEA---LGGKDKYAT-VRFGE----PL-----------SG----YNTDFNVFVDDIARAMLQHR-VI 186 (331)
T ss_dssp SCSSSHHHHHHHHHHH---HHTTSCCEE-EEBSC----SS-----------TT----CBCCHHHHHHHHHHHHHHCS-EE
T ss_pred CCCCCHHHHHHHHHHh---CCCCEEEEE-ecchh----hh-----------hh----hhcCHHHHHHHHHHHHhhCC-EE
Confidence 4799999999999986 111234554 31000 10 00 00234455555666666656 99
Q ss_pred EEeCCCC
Q 040234 81 VIDDAAH 87 (377)
Q Consensus 81 VLDdv~~ 87 (377)
|+|++..
T Consensus 187 VIDsI~a 193 (331)
T 2vhj_A 187 VIDSLKN 193 (331)
T ss_dssp EEECCTT
T ss_pred EEecccc
Confidence 9999965
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.05 E-value=0.15 Score=45.26 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=25.9
Q ss_pred eEEEEecchhHHhh-----CCCCCeeecCCCChhhhHHHHHHHh
Q 040234 106 RIIITTRNEHLLKL-----HPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 106 ~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
-++.+|..+.+... -.-...+.++..+.++-.++|....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45566766544221 1235677888899998889988766
No 77
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.73 E-value=0.048 Score=50.07 Aligned_cols=50 Identities=14% Similarity=-0.019 Sum_probs=35.9
Q ss_pred CeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCCCCchhhHHHH
Q 040234 124 KVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHCQKSTLNALMS 177 (377)
Q Consensus 124 ~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~~ 177 (377)
....+++.+.++-.+++.+.+...... -..+.+..|++.++| .|-.+..+
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G--~~R~a~~l 222 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRG--TPRIAIRL 222 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTT--CHHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCC--ChHHHHHH
Confidence 457899999999999998876322212 124668899999999 88655433
No 78
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.67 E-value=0.15 Score=44.54 Aligned_cols=59 Identities=8% Similarity=0.030 Sum_probs=32.7
Q ss_pred eEEEEecchhHHhh-----CCCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 106 RIIITTRNEHLLKL-----HPVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 106 ~IIvTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
.++.||..+..... ..-...+.++..+.++-.+++........-... .....|++.+.|
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G 219 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPG 219 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTT
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCC
Confidence 34456665544221 123456788888888888888766522111111 113457777777
No 79
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.66 E-value=0.066 Score=52.73 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=24.8
Q ss_pred CCeEEEEecch-----hHHhhCCCCCeeecCCCChhhhHHHHHHHh
Q 040234 104 GSRIIITTRNE-----HLLKLHPVKKVYKLEALTYDEAFRLLCLKA 144 (377)
Q Consensus 104 gs~IIvTTR~~-----~v~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 144 (377)
...+|.||... .+..++ ..+.+.+++.++-.+++..+.
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred ceEEEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 34566666543 223333 468899999999888887654
No 80
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.30 E-value=0.16 Score=45.15 Aligned_cols=43 Identities=7% Similarity=-0.031 Sum_probs=26.4
Q ss_pred CCCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 122 VKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 122 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
-...+.++..+.++-.+++...+....-... .....+++.+.|
T Consensus 201 f~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G 243 (278)
T 1iy2_A 201 FDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPG 243 (278)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCC
Confidence 3567888888988888888766532111111 113457777777
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.28 E-value=0.017 Score=45.96 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||++|+.+++...
T Consensus 36 ~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 36 AGSPFETVARYFHKNGT 52 (143)
T ss_dssp TTCCHHHHHGGGCCTTS
T ss_pred CCccHHHHHHHHHHhCC
Confidence 69999999999998544
No 82
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.18 E-value=0.13 Score=49.25 Aligned_cols=32 Identities=38% Similarity=0.550 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhh
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREK 33 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~ 33 (377)
+|+|||||++.+......++....-+..+++.
T Consensus 160 sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGer 191 (473)
T 1sky_E 160 AGVGKTVLIQELIHNIAQEHGGISVFAGVGER 191 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCCEEEEEESSC
T ss_pred CCCCccHHHHHHHhhhhhccCcEEEEeeeccC
Confidence 69999999999998665544433333335443
No 83
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.94 E-value=0.27 Score=47.74 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=33.5
Q ss_pred CeEEEEecchhHHhh-C----CCCCeeecCCCChhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHhCC
Q 040234 105 SRIIITTRNEHLLKL-H----PVKKVYKLEALTYDEAFRLLCLKAFDTHKPLEEYVELAESVVRICHC 167 (377)
Q Consensus 105 s~IIvTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~I~~~c~G 167 (377)
..|+.||..+..... . .-...+.++..+.++-.+++..++....-... .....|++.+.|
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G 234 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPG 234 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCS
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCC
Confidence 345556666554221 1 22457888888888888888766532111111 113456777777
No 84
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.48 E-value=0.095 Score=48.55 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc----cCccchhhhHHHHHHHhc-C
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD----NNIRNVYDGINMLRVRLR-R 75 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~ 75 (377)
.+|+||||||.+++......-..++|+. ..... +.. .+++++.... ....+.++..+.++..++ .
T Consensus 69 ppGsGKSTLal~la~~~~~~gg~VlyId-~E~s~----~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 69 QESSGKTTLALHAIAEAQKMGGVAAFID-AEHAL----DPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCCC----CHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEe-ccccc----chH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 3799999999999986543322345654 32221 221 3344332211 122344455555555544 4
Q ss_pred ceEEEEEeCCCC
Q 040234 76 KKVLVVIDDAAH 87 (377)
Q Consensus 76 k~~LLVLDdv~~ 87 (377)
+.-++|+|.+..
T Consensus 139 ~~dlvVIDSi~~ 150 (356)
T 3hr8_A 139 VVDLIVVDSVAA 150 (356)
T ss_dssp CCSEEEEECTTT
T ss_pred CCCeEEehHhhh
Confidence 455888888754
No 85
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.43 E-value=0.065 Score=49.91 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=39.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc----cCccchhhhHHHHHHHhcC-c
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD----NNIRNVYDGINMLRVRLRR-K 76 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~~-k 76 (377)
+|+||||||.+++......-..++|+. ..... + .+ .+++++.... ..+.+.++..+.+++..+. .
T Consensus 83 pGsGKTtlal~la~~~~~~g~~vlyi~-~E~s~----~--~~---~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKAGGTCAFID-AEHAL----D--PV---YARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCCC----C--HH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEE-CCCCh----h--HH---HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 799999999999885543323456665 33222 2 11 1233322111 1123444555555555443 3
Q ss_pred eEEEEEeCCC
Q 040234 77 KVLVVIDDAA 86 (377)
Q Consensus 77 ~~LLVLDdv~ 86 (377)
.-+||+|.+.
T Consensus 153 ~~lVVIDsl~ 162 (366)
T 1xp8_A 153 IDVVVVDSVA 162 (366)
T ss_dssp CSEEEEECTT
T ss_pred CCEEEEeChH
Confidence 4588888874
No 86
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.39 E-value=0.074 Score=45.44 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||||++.++....
T Consensus 32 ~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999997443
No 87
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.21 E-value=0.056 Score=50.47 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHchhccccccc-eEEecchhh
Q 040234 2 GGLGKTTLARVVYDLISHEFDGS-SFLADVREK 33 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~-~w~~~~~~~ 33 (377)
+|+|||||++.+++.+.+..+.. +.+..+++.
T Consensus 183 sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 183 PKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSC
T ss_pred CCCChhHHHHHHHHHHhhcCCCeeEEEEEecCC
Confidence 79999999999998665544432 334435543
No 88
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.17 E-value=0.067 Score=48.58 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=19.6
Q ss_pred CCCCcHHHHHHHHHchhcccc--ccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEF--DGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f--~~~~w~~ 28 (377)
.+|+||||||.+++......+ ...+|+.
T Consensus 36 ~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 36 PSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 379999999999988655443 2345554
No 89
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.17 E-value=0.18 Score=52.46 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||+||+.+++...
T Consensus 596 p~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 596 PTGVGKTELAKTLAATLF 613 (854)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 369999999999998653
No 90
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.14 E-value=0.087 Score=54.06 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+|||+||+.+++..
T Consensus 496 ~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 37999999999999866
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.84 E-value=0.059 Score=48.93 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||+||..+++...
T Consensus 161 ~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 161 MGIGKSYLLAAMAHELS 177 (308)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999999665
No 92
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.83 E-value=1.1 Score=40.92 Aligned_cols=98 Identities=6% Similarity=-0.051 Sum_probs=61.7
Q ss_pred CceEEEEEeCCCC---hhhhhHhhCCCCCCCCCCeEEEEecc-------hhHHhh-CCCCCeeecCCCChhhhHHHHHHH
Q 040234 75 RKKVLVVIDDAAH---PDHLRRLVGEPDWFGPGSRIIITTRN-------EHLLKL-HPVKKVYKLEALTYDEAFRLLCLK 143 (377)
Q Consensus 75 ~k~~LLVLDdv~~---~~~~~~l~~~l~~~~~gs~IIvTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 143 (377)
+++-++|+|++.. .+.++.|...+..-.+++.+|+++.. ..+... ......++..++++++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4566888999865 34445554433322456677666532 234443 344678899999999999888777
Q ss_pred hcCCCCCchhHHHHHHHHHHHhCCCCchhhHHH
Q 040234 144 AFDTHKPLEEYVELAESVVRICHCQKSTLNALM 176 (377)
Q Consensus 144 ~~~~~~~~~~~~~~~~~I~~~c~G~~lplal~~ 176 (377)
+....- .-.++.+..|++.++| ....+..
T Consensus 155 ~~~~g~--~i~~~a~~~l~~~~~g--dl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL--ELDDAANQVLCYCYEG--NLLALAQ 183 (343)
T ss_dssp HHHTTC--EECHHHHHHHHHSSTT--CHHHHHH
T ss_pred HHHcCC--CCCHHHHHHHHHHhch--HHHHHHH
Confidence 632221 1124677888899998 7766654
No 93
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.80 E-value=0.32 Score=44.15 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDL 51 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l 51 (377)
+|+||||||.+++.....+-..++|+. .- . +..++...++...
T Consensus 77 pG~GKTtl~l~ia~~~a~~g~~vl~~s-lE-~-----s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 77 PSMGKTAFALKQAKNMSDNDDVVNLHS-LE-M-----GKKENIKRLIVTA 119 (315)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCEEEEEE-SS-S-----CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEE-CC-C-----CHHHHHHHHHHHH
Confidence 799999999999874432223445554 21 1 5667777766553
No 94
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.79 E-value=0.23 Score=45.75 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||+||.+++...
T Consensus 131 ~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 131 FRTGKTQLSHTLCVTA 146 (343)
T ss_dssp TTCTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998753
No 95
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.47 E-value=0.4 Score=45.93 Aligned_cols=45 Identities=24% Similarity=0.374 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
+|+|||+|+.++++.+....+..+-+..+++..+ .+.++.+++..
T Consensus 162 ~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~r---Ev~e~~~~~~~ 206 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR---EGNDLYHEMIE 206 (482)
T ss_dssp TTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHH---HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhHhhCCCEEEEEECCCcch---HHHHHHHHhhh
Confidence 6999999999999865433233333333555431 44555555554
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.42 E-value=0.11 Score=44.42 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
..|+|||||++.++..
T Consensus 33 ~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVM 48 (231)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3799999999999873
No 97
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.33 E-value=0.28 Score=42.19 Aligned_cols=16 Identities=19% Similarity=0.046 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
.+|+|||||+..++..
T Consensus 32 ~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVT 47 (243)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 3799999999999874
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.31 E-value=0.022 Score=49.16 Aligned_cols=102 Identities=10% Similarity=-0.071 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc-cCccchhhhHHHHHHHhcCc-eEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-NNIRNVYDGINMLRVRLRRK-KVL 79 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~k-~~L 79 (377)
.|+||||++..++++...+-..++.+. ..... . -...++++++.... .......+..+.+++.+.+. .-+
T Consensus 21 mGsGKTT~ll~~~~r~~~~g~kVli~~-~~~d~------r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYADVKYLVFK-PKIDT------R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEE-ECCCG------G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEE-eccCc------h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 599999999999987655432233322 11100 0 00112222211100 01122233444444444334 449
Q ss_pred EEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 80 VVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 80 LVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
||+|.+.. .++++.+.. +. ..+-.||+|.+..
T Consensus 93 ViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 93 IGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLDK 126 (223)
T ss_dssp EEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCSB
T ss_pred EEEecCccCcHHHHHHHHH-HH--hCCCeEEEEeccc
Confidence 99999864 334333322 11 1267899998854
No 99
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.15 E-value=0.21 Score=45.49 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||+||.+++...
T Consensus 116 ~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 116 FGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHhHHHHHHHHHH
Confidence 7999999999998754
No 100
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.12 E-value=0.42 Score=38.41 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHH
Q 040234 1 MGGLGKTTLARVV 13 (377)
Q Consensus 1 mgGiGKTtLA~~v 13 (377)
++|+||||+|+.+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5899999999999
No 101
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.87 E-value=0.15 Score=47.23 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+||||||.+++......-..++|+.
T Consensus 72 pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 72 ESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 799999999999985543323455665
No 102
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.80 E-value=0.071 Score=43.70 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+++++.
T Consensus 11 ~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 589999999999998664
No 103
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.65 E-value=0.57 Score=45.02 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHchhcc-ccccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISH-EFDGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~-~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
+|+|||+|+.++++.+.. +-+..+++ .+++..+ ...++.+++..
T Consensus 174 ~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER~r---Ev~e~~~~~~~ 218 (498)
T 1fx0_B 174 AGVGKTVLIMELINNIAKAHGGVSVFG-GVGERTR---EGNDLYMEMKE 218 (498)
T ss_dssp SSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCCSH---HHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhhCCCEEEEE-EcccCcH---HHHHHHHhhhc
Confidence 699999999999986543 33344444 3665431 44555555543
No 104
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.65 E-value=0.2 Score=40.92 Aligned_cols=19 Identities=16% Similarity=0.023 Sum_probs=13.9
Q ss_pred HHHHHhcCceEEEEEeCCC
Q 040234 68 MLRVRLRRKKVLVVIDDAA 86 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~ 86 (377)
.+-+.+..++-+|+||.-.
T Consensus 93 ~iAral~~~p~~lllDEPt 111 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPE 111 (171)
T ss_dssp HHHHHTTCEEEEEEECCCH
T ss_pred HHHHHcCCcEEEEEEeCCH
Confidence 3445567788899999864
No 105
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.43 E-value=0.18 Score=46.55 Aligned_cols=27 Identities=22% Similarity=0.110 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+||||||.+++......-...+|+.
T Consensus 70 pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 70 ESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 799999999999975543323445555
No 106
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.30 E-value=0.55 Score=48.49 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=59.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEE
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLV 80 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LL 80 (377)
.+|+||||||+.++......| +.+. ........ . ..........++......+.++
T Consensus 246 p~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~--~------------------g~~~~~l~~vf~~a~~~~p~il 301 (806)
T 1ypw_A 246 PPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL--A------------------GESESNLRKAFEEAEKNAPAII 301 (806)
T ss_dssp CTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS--T------------------THHHHHHHHHHHHHHHHCSEEE
T ss_pred cCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh--h------------------hhHHHHHHHHHHHHHhcCCcEE
Confidence 379999999999998765443 2222 11111000 0 0001111222333334457899
Q ss_pred EEeCCCCh----------------hhhhHhhCCCCCCCCCCeEEEEecchh-HHhhC----CCCCeeecCCCChhhhHHH
Q 040234 81 VIDDAAHP----------------DHLRRLVGEPDWFGPGSRIIITTRNEH-LLKLH----PVKKVYKLEALTYDEAFRL 139 (377)
Q Consensus 81 VLDdv~~~----------------~~~~~l~~~l~~~~~gs~IIvTTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~L 139 (377)
++|+++.. .++-.+...+.. ..+..+|.||.... +-... .-...+.+...+.++-.++
T Consensus 302 ~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~i 380 (806)
T 1ypw_A 302 FIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp EEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHH
T ss_pred EeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHH
Confidence 99998421 112222222221 22345555665432 21111 1234567888888888888
Q ss_pred HHHHh
Q 040234 140 LCLKA 144 (377)
Q Consensus 140 ~~~~~ 144 (377)
+...+
T Consensus 381 l~~~~ 385 (806)
T 1ypw_A 381 LQIHT 385 (806)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 87665
No 107
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.95 E-value=0.5 Score=45.86 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDL 51 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l 51 (377)
+|+|||+||.+++........ .++|+. .-. +..++...++...
T Consensus 251 pG~GKT~lal~~a~~~a~~~g~~vl~~s-~E~------s~~~l~~r~~~~~ 294 (503)
T 1q57_A 251 SGMVMSTFVRQQALQWGTAMGKKVGLAM-LEE------SVEETAEDLIGLH 294 (503)
T ss_dssp SCHHHHHHHHHHHHHHTTTSCCCEEEEE-SSS------CHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhcCCcEEEEe-ccC------CHHHHHHHHHHHH
Confidence 799999999999986554322 345544 211 5567777666554
No 108
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.74 E-value=0.37 Score=43.76 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
+|+|||+||.+++..
T Consensus 107 ~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 107 FGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999999864
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.64 E-value=0.33 Score=44.91 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=36.9
Q ss_pred hhHHHHHHHhcCceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhHH
Q 040234 64 DGINMLRVRLRRKKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHLL 117 (377)
Q Consensus 64 ~~~~~l~~~l~~k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~ 117 (377)
...+.+.+.|...+=+|++|.+.+.+.++.+.... ..|..||+|+.....+
T Consensus 184 ~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 184 GFSEALRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 45568888999999999999999877666544331 2356688888876544
No 110
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.58 E-value=0.088 Score=49.12 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHchhcccccc-ceEEecchhh
Q 040234 2 GGLGKTTLARVVYDLISHEFDG-SSFLADVREK 33 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~-~~w~~~~~~~ 33 (377)
+|+|||+|+.++++.+....+. .+.+..+++.
T Consensus 184 ~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 184 PKAGKTTILKEIANGIAENHPDTIRIILLIDER 216 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCC
T ss_pred CCCChhHHHHHHHHHHhhcCCCeEEEEEEeccC
Confidence 6999999999999866544333 2334435554
No 111
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.35 E-value=0.38 Score=49.41 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
++|.|||.||+.++++....
T Consensus 519 PPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 519 PPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp STTSSHHHHHHHHHHTTTCE
T ss_pred CCCCCchHHHHHHHHHhCCc
Confidence 47999999999999976543
No 112
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.04 E-value=0.78 Score=43.72 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHHHHh
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLL 52 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~ 52 (377)
+|+|||+||.+++........ .++|+. .- . +..++...++....
T Consensus 209 pg~GKT~lal~ia~~~a~~~g~~vl~~s-lE-~-----~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 209 PAMGKTAFALTIAQNAALKEGVGVGIYS-LE-M-----PAAQLTLRMMCSEA 253 (444)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCCEEEEE-SS-S-----CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEE-CC-C-----CHHHHHHHHHHHHc
Confidence 799999999999985543222 344443 21 1 55677777665543
No 113
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.89 E-value=0.72 Score=42.24 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDL 51 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l 51 (377)
+|+||||||..++.....+=..++|+. . +. +..++...++...
T Consensus 55 pG~GKTt~al~ia~~~a~~g~~Vl~fS-l-Em-----s~~ql~~Rlls~~ 97 (338)
T 4a1f_A 55 PSMGKTSLMMNMVLSALNDDRGVAVFS-L-EM-----SAEQLALRALSDL 97 (338)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCEEEEEE-S-SS-----CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEe-C-CC-----CHHHHHHHHHHHh
Confidence 799999999999985443212334443 2 11 6667777776654
No 114
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=89.85 E-value=1.6 Score=37.60 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|.|||.+|..++.+.
T Consensus 117 tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL 132 (237)
T ss_dssp SSTTHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5999999999888754
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.85 E-value=0.14 Score=41.47 Aligned_cols=18 Identities=17% Similarity=-0.023 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++++..
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998654
No 116
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.74 E-value=0.76 Score=41.48 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=18.9
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+||||++..++...+.. ...+.+.
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~-g~kV~lv 138 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDE-GKSVVLA 138 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCChHHHHHHHHHHHHHhc-CCEEEEE
Confidence 37999999999999866543 2334443
No 117
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.71 E-value=0.62 Score=44.36 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHchhcccc---ccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEF---DGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f---~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
+|+|||+|+.++++....+- +..+.+..+++..+ .+.++.+.+..
T Consensus 160 ~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~---Ev~e~~~~~~~ 207 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFE---EAEFFMEDFRQ 207 (465)
T ss_dssp TTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHH---HHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcH---HHHHHHHHHhh
Confidence 69999999999998654322 22333343555431 44555555443
No 118
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.68 E-value=0.4 Score=42.23 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||||++.+...+...+.+.+.+....-..... .... +..+..... +.......+.+.|..++=+|+
T Consensus 34 ~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~-~~~~--------~v~q~~~gl-~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 34 TGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-HKKS--------IVNQREVGE-DTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp TTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC-CSSS--------EEEEEEBTT-TBSCHHHHHHHHHHHCCSEEE
T ss_pred CCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecC-Ccce--------eeeHHHhCC-CHHHHHHHHHHHHhhCCCEEE
Confidence 699999999999985543334444443110000000 0000 000000000 112335566677776777899
Q ss_pred EeCCCChhhhhHhhCCCCCCCCCCeEEEEecchhH
Q 040234 82 IDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEHL 116 (377)
Q Consensus 82 LDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~v 116 (377)
+|...|.+....+.... ..|..|++||.....
T Consensus 104 lDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 104 VGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp ESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred eCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 99998765544333221 235668888876543
No 119
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.28 E-value=0.99 Score=43.14 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHchhccccc-cceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~-~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
+|+||||||..++..+..... .++|+. .-. +..++...++.
T Consensus 212 pG~GKTtl~l~ia~~~~~~~g~~Vl~~s-~E~------s~~~l~~r~~~ 253 (454)
T 2r6a_A 212 PSVGKTAFALNIAQNVATKTNENVAIFS-LEM------SAQQLVMRMLC 253 (454)
T ss_dssp TTSCHHHHHHHHHHHHHHHSSCCEEEEE-SSS------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEEE-CCC------CHHHHHHHHHH
Confidence 799999999999986543222 344443 211 44566655544
No 120
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.22 E-value=0.16 Score=41.76 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++++..
T Consensus 13 ~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999998653
No 121
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.21 E-value=0.96 Score=37.66 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||||+.++..+
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999865
No 122
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.82 E-value=0.82 Score=38.65 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||+|+|+.++++.
T Consensus 8 pPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 8 PPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 48999999999999754
No 123
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.82 E-value=0.62 Score=42.56 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=51.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccccCccchhhhHHHHHHHhcCceEEEE
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNNIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
.|+|||||++.+...+.. -...+.+.+....... ... ................+.+.|..++=+|+
T Consensus 180 ~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~--~~~-----------~~i~~~~ggg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 180 TGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK--HHK-----------NYTQLFFGGNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp TTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS--SCS-----------SEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred CCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc--cch-----------hEEEEEeCCChhHHHHHHHHhhhCCCEEE
Confidence 699999999999985543 2345555432211000 000 00000000123345567777888888999
Q ss_pred EeCCCChhhhhHhhCCCCCCCCCCeEEEEecchh
Q 040234 82 IDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEH 115 (377)
Q Consensus 82 LDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~ 115 (377)
||.+.+.+.++.+... . ..+..+|+||....
T Consensus 246 ldE~~~~e~~~~l~~~-~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 246 LGELRSSEAYDFYNVL-C--SGHKGTLTTLHAGS 276 (330)
T ss_dssp ECCCCSTHHHHHHHHH-H--TTCCCEEEEEECSS
T ss_pred EcCCChHHHHHHHHHH-h--cCCCEEEEEEcccH
Confidence 9999886555544322 1 11223677776543
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.71 E-value=0.19 Score=42.14 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++...
T Consensus 33 ~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999999866
No 125
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.54 E-value=1.8 Score=35.90 Aligned_cols=17 Identities=47% Similarity=0.517 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+|||||++.++...
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999999865
No 126
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.51 E-value=0.3 Score=40.78 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 11 gG~GKTt~a~~la~~la~~ 29 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRS 29 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHC
Confidence 8999999999999865543
No 127
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.22 E-value=0.78 Score=43.77 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSD 50 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~ 50 (377)
+|+|||+||.+++......=..++|+. .-. +..++...++..
T Consensus 206 pG~GKTtlal~ia~~~a~~g~~vl~fS-lEm------s~~ql~~R~~~~ 247 (444)
T 3bgw_A 206 PSMGKTAFALKQAKNMSDNDDVVNLHS-LEM------GKKENIKRLIVT 247 (444)
T ss_dssp SSSSHHHHHHHHHHHHHHTTCEEEEEC-SSS------CTTHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHcCCEEEEEE-CCC------CHHHHHHHHHHH
Confidence 799999999999985543312334443 211 444666665554
No 128
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.96 E-value=0.21 Score=40.75 Aligned_cols=15 Identities=40% Similarity=0.432 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
++|+||||+|+.+++
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999987
No 129
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.89 E-value=1.1 Score=43.26 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=18.3
Q ss_pred CCCcHHHHHH-HHHchhccccccceEEecchhh
Q 040234 2 GGLGKTTLAR-VVYDLISHEFDGSSFLADVREK 33 (377)
Q Consensus 2 gGiGKTtLA~-~v~~~~~~~f~~~~w~~~~~~~ 33 (377)
+|+|||+||. .+++... -+..+.+..+++.
T Consensus 172 ~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR 202 (507)
T 1fx0_A 172 RQTGKTAVATDTILNQQG--QNVICVYVAIGQK 202 (507)
T ss_dssp SSSSHHHHHHHHHHTCCT--TTCEEEEEEESCC
T ss_pred CCCCccHHHHHHHHHhhc--CCcEEEEEEcCCC
Confidence 6999999964 7777543 2333344446654
No 130
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=87.88 E-value=0.92 Score=43.34 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHHchhcccc---ccceEEecchhhcccccCHHHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEF---DGSSFLADVREKCDKEGSVISLQKQLLS 49 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f---~~~~w~~~~~~~~~~~~~~~~~~~~i~~ 49 (377)
+|+|||+|+.++++...... +..+.+..+++..+ .+.++.+.+..
T Consensus 161 ~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~---Ev~e~~~~~~~ 208 (469)
T 2c61_A 161 SGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNE---EAQYFMSDFEK 208 (469)
T ss_dssp TTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHH---HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcH---HHHHHHHHHHh
Confidence 69999999999998543211 12333443555431 44555555543
No 131
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.86 E-value=0.56 Score=39.33 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=16.7
Q ss_pred CCCcHHHHHHHHHchhcccc
Q 040234 2 GGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f 21 (377)
-|+||||.++.+++.++.+-
T Consensus 9 DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCC
Confidence 59999999999999776553
No 132
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.78 E-value=0.23 Score=40.57 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.++.+..
T Consensus 12 ~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 12 FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998653
No 133
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.50 E-value=1.3 Score=42.67 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=39.2
Q ss_pred CCCcHHHHH-HHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc------ccCccch----------hh
Q 040234 2 GGLGKTTLA-RVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA------DNNIRNV----------YD 64 (377)
Q Consensus 2 gGiGKTtLA-~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~----------~~ 64 (377)
.|+|||+|| ..+.++- +-+..+.+..+++..+ .+.++.+.+... +... ....... -.
T Consensus 171 ~g~GKT~l~l~~I~n~~--~~dv~~V~~~IGeR~~---ev~e~~~~l~~~-g~m~~tvvV~atad~p~~~r~~a~~~a~t 244 (513)
T 3oaa_A 171 RQTGKTALAIDAIINQR--DSGIKCIYVAIGQKAS---TISNVVRKLEEH-GALANTIVVVATASESAALQYLAPYAGCA 244 (513)
T ss_dssp SSSSHHHHHHHHHHTTS--SSSCEEEEEEESCCHH---HHHHHHHHHHHH-SCSTTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHhhc--cCCceEEEEEecCChH---HHHHHHHHHhhc-CcccceEEEEECCCCChHHHHHHHHHHHH
Confidence 489999997 4666642 2233333444665432 444555544332 1000 0000110 12
Q ss_pred hHHHHHHHhcCceEEEEEeCCCC
Q 040234 65 GINMLRVRLRRKKVLVVIDDAAH 87 (377)
Q Consensus 65 ~~~~l~~~l~~k~~LLVLDdv~~ 87 (377)
..+.++. +++..||++||+-.
T Consensus 245 iAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 245 MGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHH--TTCEEEEEEETHHH
T ss_pred HHHHHHh--cCCCEEEEecChHH
Confidence 2334443 58999999999743
No 134
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.36 E-value=1.1 Score=42.54 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||+|+.++++...
T Consensus 156 ~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 156 SGLPANEIAAQIARQAT 172 (464)
T ss_dssp TTSCHHHHHHHHHHHCB
T ss_pred CCCCchHHHHHHHHHHH
Confidence 69999999999998543
No 135
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.30 E-value=0.24 Score=40.77 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
++|+||||+|+.+++++..
T Consensus 9 ~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp CTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999999987653
No 136
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.21 E-value=0.25 Score=41.14 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+++.+.
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHhcC
Confidence 479999999999998654
No 137
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=87.16 E-value=0.8 Score=45.23 Aligned_cols=32 Identities=19% Similarity=0.470 Sum_probs=21.7
Q ss_pred EEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEec
Q 040234 78 VLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTR 112 (377)
Q Consensus 78 ~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR 112 (377)
=+||+|.+.. ...+..+...++ .+.++|+.--
T Consensus 281 dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 281 DLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred CEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 4899999864 456777777654 4567776543
No 138
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.08 E-value=0.32 Score=41.81 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.||+||||+|..++.....+
T Consensus 14 kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp STTSSHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHC
Confidence 38999999999999865443
No 139
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.07 E-value=1.1 Score=43.23 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=24.4
Q ss_pred CCCcHHHHH-HHHHchhcc------ccccceEEecchhhcccccCHHHHHHHHH
Q 040234 2 GGLGKTTLA-RVVYDLISH------EFDGSSFLADVREKCDKEGSVISLQKQLL 48 (377)
Q Consensus 2 gGiGKTtLA-~~v~~~~~~------~f~~~~w~~~~~~~~~~~~~~~~~~~~i~ 48 (377)
+|+|||+|| ..++++... +-+..+.+..+++..+ .+.++.+.+.
T Consensus 171 ~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~---Ev~~~~~~~~ 221 (510)
T 2ck3_A 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS---TVAQLVKRLT 221 (510)
T ss_dssp TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH---HHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH---HHHHHHHHHH
Confidence 699999996 466665542 2333344444665431 4444444444
No 140
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.97 E-value=0.26 Score=40.34 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 19 ~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 19 TPGVGKTTLGKELASKS 35 (180)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999765
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.72 E-value=0.28 Score=40.41 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.++++..
T Consensus 11 ~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998665
No 142
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.68 E-value=0.29 Score=40.40 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++.+.
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 13 HPATGKTTLSQALATGL 29 (193)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999998865
No 143
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.50 E-value=0.39 Score=40.62 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecch
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVR 31 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~ 31 (377)
||+||||+|..++..+...- .+.+.|..
T Consensus 10 GGvGKTT~a~~LA~~la~~g--~VlliD~D 37 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQG--ETLLIDGD 37 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTTS--CEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHhcC--CEEEEECC
Confidence 89999999999998665553 45444443
No 144
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.44 E-value=0.3 Score=39.57 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+|||||++.++....
T Consensus 12 ~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998653
No 145
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.37 E-value=0.3 Score=40.34 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
+.|+|||||++.++..
T Consensus 17 ~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 17 HPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTSCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 4799999999999875
No 146
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.19 E-value=0.33 Score=39.21 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+++++.
T Consensus 15 ~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998654
No 147
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.15 E-value=0.45 Score=40.95 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+...
T Consensus 14 GGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp TTSSHHHHHHHHHHHHTTS
T ss_pred CCcchHHHHHHHHHHHHhC
Confidence 8999999999999866654
No 148
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=86.04 E-value=0.77 Score=44.16 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=23.3
Q ss_pred CCCcHHHHHH-HHHchhccccccceEEecchhhcccccCHHHHHHHHH
Q 040234 2 GGLGKTTLAR-VVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLL 48 (377)
Q Consensus 2 gGiGKTtLA~-~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~ 48 (377)
+|+|||+||. .+++... -+..+.+..+++..+ .+.++.+.+.
T Consensus 171 ~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~~---Ev~~~~~~~~ 213 (502)
T 2qe7_A 171 RQTGKTTIAIDTIINQKG--QDVICIYVAIGQKQS---TVAGVVETLR 213 (502)
T ss_dssp SSSCHHHHHHHHHHGGGS--CSEEEEEEEESCCHH---HHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhhc--CCcEEEEEECCCcch---HHHHHHHHHh
Confidence 6999999964 7776542 233333443655431 3444444443
No 149
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.50 E-value=0.89 Score=41.82 Aligned_cols=16 Identities=38% Similarity=0.443 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||+..++...
T Consensus 140 ~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 140 FGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7999999999999855
No 150
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=85.44 E-value=0.75 Score=44.03 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+|||+++..++..+...
T Consensus 53 ~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 53 PAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp CTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999865444
No 151
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.31 E-value=0.99 Score=41.92 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=32.2
Q ss_pred hhHHHHHHHhcCceEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchh
Q 040234 64 DGINMLRVRLRRKKVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEH 115 (377)
Q Consensus 64 ~~~~~l~~~l~~k~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~ 115 (377)
.....++..+...+=+|++|.+.+.+.+....... ..|..||.|+....
T Consensus 197 ~~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 197 SFADALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp CSHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HHHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 34567788888788899999998866554433221 33556777776543
No 152
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=85.29 E-value=1.5 Score=42.16 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=23.5
Q ss_pred CCCcHHHHHH-HHHchhccccccceEEecchhhcccccCHHHHHHHHH
Q 040234 2 GGLGKTTLAR-VVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLL 48 (377)
Q Consensus 2 gGiGKTtLA~-~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~ 48 (377)
+|+|||+||. .+++... -+..+.+..+++..+ .+.++.+.+.
T Consensus 184 ~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR~~---Ev~e~~~~~~ 226 (515)
T 2r9v_A 184 RQTGKTAIAIDTIINQKG--QGVYCIYVAIGQKKS---AIARIIDKLR 226 (515)
T ss_dssp TTSSHHHHHHHHHHTTTT--TTEEEEEEEESCCHH---HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCcH---HHHHHHHHHH
Confidence 6999999964 7777542 233333443655431 4445555544
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.29 E-value=0.37 Score=42.16 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||||+.++.+..
T Consensus 9 ~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHhcCC
Confidence 479999999999998553
No 154
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.14 E-value=0.38 Score=38.91 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++++..
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998653
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.10 E-value=1.6 Score=39.01 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+||||++..++....
T Consensus 113 ~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISM 130 (296)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 379999999999998654
No 156
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=85.05 E-value=0.36 Score=40.36 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||||+.++..+.
T Consensus 33 ~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLY 50 (200)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998765
No 157
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.04 E-value=0.25 Score=40.45 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=11.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++++..
T Consensus 13 ~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CC----CHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 479999999999987654
No 158
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.96 E-value=0.4 Score=39.34 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.++++..
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998653
No 159
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.78 E-value=0.42 Score=38.42 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+.++..
T Consensus 8 ~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998653
No 160
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.73 E-value=0.53 Score=38.74 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
++|+||||+++.++..+..
T Consensus 21 ~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999999986643
No 161
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=84.64 E-value=2.3 Score=36.31 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=13.3
Q ss_pred hhHHHHHHHhcCceEEEEEeCCCC
Q 040234 64 DGINMLRVRLRRKKVLVVIDDAAH 87 (377)
Q Consensus 64 ~~~~~l~~~l~~k~~LLVLDdv~~ 87 (377)
.+.+.+++.+.+ --+||+|.++.
T Consensus 165 ~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 165 VLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp HHHHHHHHCCTT-CCEEEECCTTS
T ss_pred HHHHHHHhhhcC-CcEEEEECCcc
Confidence 333444443333 34789999976
No 162
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.63 E-value=0.41 Score=39.27 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 12 ~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999754
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.40 E-value=0.43 Score=39.20 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+|||||++.+.....
T Consensus 13 psGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 479999999999988544
No 164
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.26 E-value=0.42 Score=39.98 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
+.|+||||+|+.++++....
T Consensus 12 ~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 47999999999999866543
No 165
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.22 E-value=0.57 Score=41.03 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 10 GGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp TTSSHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHC
Confidence 8999999999999865543
No 166
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.97 E-value=0.44 Score=39.66 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=17.0
Q ss_pred CCCCcHHHHHHHHHchhccccc
Q 040234 1 MGGLGKTTLARVVYDLISHEFD 22 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~ 22 (377)
++|+|||||++.+..+....|.
T Consensus 9 PSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CTTSSHHHHHHHHHHHCTTTEE
T ss_pred CCCCCHHHHHHHHHHhCCCCeE
Confidence 4799999999999876554443
No 167
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.91 E-value=0.46 Score=39.27 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 17 ~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999855
No 168
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.77 E-value=2.5 Score=39.57 Aligned_cols=14 Identities=21% Similarity=0.135 Sum_probs=12.2
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||+..++-
T Consensus 187 sGsGKTTLl~~la~ 200 (400)
T 3lda_A 187 FRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH
Confidence 79999999998764
No 169
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.76 E-value=0.49 Score=40.73 Aligned_cols=19 Identities=37% Similarity=0.712 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+.+.
T Consensus 9 GGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 8999999999999866544
No 170
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.63 E-value=2.1 Score=40.46 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+||||++..++..++..
T Consensus 106 ~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999865543
No 171
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=83.48 E-value=0.46 Score=39.85 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+|||||++.+.....
T Consensus 20 ~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CTTSCHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhCc
Confidence 579999999999988653
No 172
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.44 E-value=0.46 Score=38.57 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||||+.++...
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998754
No 173
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.21 E-value=0.5 Score=40.10 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++++..
T Consensus 12 ~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998653
No 174
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.20 E-value=0.53 Score=39.27 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 28 ~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999865
No 175
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.14 E-value=0.49 Score=40.19 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+++++.
T Consensus 13 ~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQ 30 (222)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999998654
No 176
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.06 E-value=0.49 Score=38.92 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.+++..
T Consensus 11 ~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=82.93 E-value=0.52 Score=38.99 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++++..
T Consensus 20 ~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998653
No 178
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=82.78 E-value=0.65 Score=39.73 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 12 gGvGKTt~a~~LA~~la~~ 30 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDR 30 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 8999999999999866544
No 179
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=82.74 E-value=2.8 Score=35.17 Aligned_cols=19 Identities=5% Similarity=0.211 Sum_probs=16.3
Q ss_pred EEEEeCCCChhhhhHhhCC
Q 040234 79 LVVIDDAAHPDHLRRLVGE 97 (377)
Q Consensus 79 LLVLDdv~~~~~~~~l~~~ 97 (377)
.+|+||+.+..+++.+...
T Consensus 105 ~vII~dvR~~~Ev~~fr~~ 123 (202)
T 3ch4_B 105 IWLVSDTRRVSDIQWFREA 123 (202)
T ss_dssp EEEECCCCSHHHHHHHHHH
T ss_pred cEEEeCCCCHHHHHHHHHh
Confidence 7999999999988888754
No 180
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.69 E-value=2.4 Score=37.91 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+||||++..++...+.. ...+.+.
T Consensus 106 ~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp CTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 37999999999999865543 3344444
No 181
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=82.68 E-value=0.51 Score=38.88 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
+.|+|||||++.++.
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 479999999999986
No 182
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.62 E-value=0.88 Score=39.04 Aligned_cols=15 Identities=40% Similarity=0.352 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
+|+|||+||.+++..
T Consensus 39 pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 39 TGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999998764
No 183
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.50 E-value=0.52 Score=41.35 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.++..+.
T Consensus 12 ~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 589999999999998643
No 184
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.36 E-value=0.55 Score=40.09 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999999754
No 185
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.24 E-value=1 Score=50.81 Aligned_cols=76 Identities=18% Similarity=0.102 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcc----ccCccchhhhHHHHHHHhc-C
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA----DNNIRNVYDGINMLRVRLR-R 75 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~l~~~l~-~ 75 (377)
.+|+|||+||.+++.+...+=...+|+. ..+.. +... ++.++... -..+.+.++..+.+++..+ .
T Consensus 1435 ppGtGKT~LA~ala~ea~~~G~~v~Fi~-~e~~~----~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1435 PESSGKTTLTLQVIAAAQREGKTCAFID-AEHAL----DPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSCC----CHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEE-ccccc----CHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 4799999999999886554433445554 33322 1222 33332110 0122233455555555543 4
Q ss_pred ceEEEEEeCCC
Q 040234 76 KKVLVVIDDAA 86 (377)
Q Consensus 76 k~~LLVLDdv~ 86 (377)
+.-+||+|.+.
T Consensus 1505 ~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1505 AVDVIVVDSVA 1515 (2050)
T ss_dssp CCSEEEESCGG
T ss_pred CCCEEEEcChh
Confidence 67799999984
No 186
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.24 E-value=0.78 Score=40.14 Aligned_cols=17 Identities=47% Similarity=0.753 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
||+||||+|..++..+.
T Consensus 37 GGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS 53 (267)
T ss_dssp SSSCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHH
Confidence 89999999999998666
No 187
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.21 E-value=0.55 Score=38.67 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
+.|+||||+|+.++++
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5799999999999986
No 188
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.14 E-value=2.5 Score=37.81 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||++..++.....
T Consensus 106 ~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SSCSSTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3799999999999985543
No 189
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.01 E-value=3.8 Score=38.84 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+||||++..++..+..+
T Consensus 108 ~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp STTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 38999999999999865543
No 190
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.98 E-value=0.58 Score=38.48 Aligned_cols=18 Identities=39% Similarity=0.720 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+++++.
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp STTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998663
No 191
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=81.84 E-value=0.71 Score=40.40 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+...
T Consensus 28 GGvGKTT~a~nLA~~la~~ 46 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQ 46 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 8999999999999865543
No 192
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=81.83 E-value=0.73 Score=39.99 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 12 gGvGKTt~a~~LA~~la~~ 30 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQK 30 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhC
Confidence 8999999999999865543
No 193
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=81.79 E-value=0.59 Score=39.42 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 194
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=81.74 E-value=0.72 Score=40.96 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+...
T Consensus 11 GGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHHHHHC
Confidence 8999999999999865443
No 195
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.71 E-value=0.74 Score=38.60 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+||||+|+.+++++..
T Consensus 17 ~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4799999999999986644
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=81.63 E-value=0.57 Score=40.80 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
||+|||||+..++....
T Consensus 23 gGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 23 AGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999997554
No 197
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=81.55 E-value=1.2 Score=37.75 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhcccc-CccchhhhHHHHHHHhcCceEEEE
Q 040234 3 GLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN-NIRNVYDGINMLRVRLRRKKVLVV 81 (377)
Q Consensus 3 GiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~k~~LLV 81 (377)
|.||||.|...+.+...+-..++.+. ..... ++ +... +.+.++..... ...+..+ +.+.+.++-=+|+
T Consensus 38 gsGKTT~lL~~a~r~~~~g~kVli~k-~~~d~-R~-ge~~----i~s~~g~~~~a~~~~~~~~----~~~~~~~~~dvVi 106 (214)
T 2j9r_A 38 FSGKSEELIRRVRRTQFAKQHAIVFK-PCIDN-RY-SEED----VVSHNGLKVKAVPVSASKD----IFKHITEEMDVIA 106 (214)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEE-CC-----------------------CCEEECSSGGG----GGGGCCSSCCEEE
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEE-eccCC-cc-hHHH----HHhhcCCeeEEeecCCHHH----HHHHHhcCCCEEE
Confidence 89999999888886544432223222 11110 00 1122 33333211110 1111111 1122223334999
Q ss_pred EeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchh
Q 040234 82 IDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEH 115 (377)
Q Consensus 82 LDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~ 115 (377)
+|.+.- .++++.+.... ..+-.||+|.++-+
T Consensus 107 IDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 107 IDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp ECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred EECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 999853 34443332211 23668999998653
No 198
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=81.49 E-value=0.57 Score=39.27 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+||||+|+.+++++..
T Consensus 18 ~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4799999999999986543
No 199
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=81.35 E-value=0.76 Score=41.23 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+...
T Consensus 50 GGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHC
Confidence 8999999999999865543
No 200
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.24 E-value=0.66 Score=39.08 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+|||||++.++.....
T Consensus 16 psGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 16 PSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CTTSCHHHHHHHHHHSTTC
T ss_pred cCCCCHHHHHHHHHhhCCC
Confidence 4799999999999986543
No 201
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.21 E-value=0.57 Score=41.86 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||||+.+..+.
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998754
No 202
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.00 E-value=4.1 Score=38.29 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++.+.
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999998754
No 203
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=81.00 E-value=0.67 Score=37.99 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 14 ~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDF 30 (194)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998854
No 204
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.99 E-value=0.64 Score=39.22 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 205
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=80.90 E-value=1.1 Score=40.71 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++....+.
T Consensus 23 GGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 23 GGVGKTTISAATALWMARS 41 (324)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHC
Confidence 8999999999999865544
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.88 E-value=2.7 Score=39.86 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+||||++..++..++.+
T Consensus 108 ~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp CTTSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHC
Confidence 37999999999998755443
No 207
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.70 E-value=0.9 Score=37.38 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
..|+|||||++.+.......|
T Consensus 9 psGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 9 PSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp SSSSSHHHHHHHHHHHCGGGE
T ss_pred CCCCCHHHHHHHHHhhCCccc
Confidence 369999999999998655444
No 208
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.54 E-value=0.72 Score=39.09 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 13 ~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999999865
No 209
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=80.46 E-value=0.69 Score=38.55 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999999754
No 210
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=80.45 E-value=0.67 Score=37.89 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHHchhccc-cccceE
Q 040234 2 GGLGKTTLARVVYDLISHE-FDGSSF 26 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~-f~~~~w 26 (377)
.|+|||||+..+...++.+ +...+.
T Consensus 13 sGsGKTTl~~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 13 KHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHhhHhcCCeeeEE
Confidence 6999999999999876544 444443
No 211
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=80.43 E-value=0.72 Score=39.57 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+++++.
T Consensus 24 ~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998653
No 212
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=80.27 E-value=0.88 Score=39.64 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 12 gGvGKTt~a~~LA~~la~~ 30 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQL 30 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 8999999999999866543
No 213
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.19 E-value=0.72 Score=38.92 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999865
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=80.14 E-value=0.72 Score=38.45 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
+.|+||||+++.++.
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 479999999999987
No 215
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.14 E-value=0.73 Score=40.27 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+++.++..+.
T Consensus 56 ~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999998654
No 216
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=80.11 E-value=0.88 Score=40.52 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+..
T Consensus 46 GGvGKTT~a~nLA~~la~ 63 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDK 63 (298)
T ss_dssp SSSSHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 899999999999985543
No 217
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=80.09 E-value=0.71 Score=38.07 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+.+.+.
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999998654
No 218
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.00 E-value=0.74 Score=38.27 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+++.+++++
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999866
No 219
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=79.99 E-value=0.72 Score=38.40 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+|||||++.+....
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998855
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=79.95 E-value=2.7 Score=39.79 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||++..++..++.
T Consensus 105 ~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3799999999999975543
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.63 E-value=0.77 Score=38.20 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+|||||++.++...
T Consensus 15 p~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 15 PSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 36999999999998753
No 222
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=79.59 E-value=0.79 Score=39.07 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++++.
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998865
No 223
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=79.46 E-value=1 Score=38.51 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=18.4
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
.+|+||||||.+++......-..++|+.
T Consensus 31 ~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3799999999988875433322344443
No 224
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=79.45 E-value=1.9 Score=36.32 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHHHchhccccc
Q 040234 2 GGLGKTTLARVVYDLISHEFD 22 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~ 22 (377)
-|+||||+++.+++.+...++
T Consensus 11 dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp TTSCHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHHHHCCCC
Confidence 599999999999997765443
No 225
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=79.41 E-value=1.2 Score=41.06 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++.....
T Consensus 35 GGvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLAE 52 (349)
T ss_dssp SSTTHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 899999999988875443
No 226
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=79.39 E-value=0.95 Score=40.20 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+...
T Consensus 14 GGvGKTT~a~nLA~~La~~ 32 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYG 32 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 8999999999999865543
No 227
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=79.38 E-value=0.69 Score=39.18 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+.++
T Consensus 11 gGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 8999999999999855443
No 228
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=79.14 E-value=2 Score=36.40 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
+.|+||||+++.+.+.+...
T Consensus 14 ~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp STTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999876543
No 229
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=79.08 E-value=0.81 Score=38.80 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++...
T Consensus 13 ~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 230
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=79.00 E-value=0.78 Score=39.97 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+...
T Consensus 16 GGvGKTt~a~~LA~~la~~ 34 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLARL 34 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHC
Confidence 8999999999999866543
No 231
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.96 E-value=0.86 Score=37.45 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=33.4
Q ss_pred hcCceEEEEEeCCC--C---hhhhhHhhCCCCCCCCCCeEEEEec---chhHHhhC---CCCCeeecCCCChhhhHH
Q 040234 73 LRRKKVLVVIDDAA--H---PDHLRRLVGEPDWFGPGSRIIITTR---NEHLLKLH---PVKKVYKLEALTYDEAFR 138 (377)
Q Consensus 73 l~~k~~LLVLDdv~--~---~~~~~~l~~~l~~~~~gs~IIvTTR---~~~v~~~~---~~~~~~~l~~L~~~ea~~ 138 (377)
+..++-+++||.+. + ....+.+...+.. .+..+|++|. +...+... .....+++...+.++..+
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~ 170 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILE 170 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHH
Confidence 66677799999942 2 1122222222221 3444777773 33333322 224677777776655544
No 232
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=78.91 E-value=0.74 Score=38.71 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||++.++..+.
T Consensus 30 ~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CTTSCTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 379999999999998554
No 233
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=78.75 E-value=0.86 Score=37.13 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+++.++..+.
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 479999999999998653
No 234
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=78.73 E-value=0.86 Score=38.37 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++..+.
T Consensus 33 ~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLV 50 (211)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 479999999999998654
No 235
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=78.63 E-value=0.86 Score=39.40 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+|||||++.++++.
T Consensus 35 ~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999654
No 236
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=78.56 E-value=0.88 Score=38.00 Aligned_cols=15 Identities=47% Similarity=0.479 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
+.|+||||+++.++.
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 237
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=78.29 E-value=0.91 Score=37.99 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
.+|+||||||+.+....
T Consensus 29 ~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp STTSSHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 36999999999998753
No 238
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=77.82 E-value=0.93 Score=39.49 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+|||||++.+++++.
T Consensus 35 ~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 35 PSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 479999999999997553
No 239
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.69 E-value=0.67 Score=40.40 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.++.+..
T Consensus 40 ~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CGGGTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 479999999999998653
No 240
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.39 E-value=0.99 Score=39.06 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998754
No 241
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=77.37 E-value=0.98 Score=37.40 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
+.|+||||+|+.+++.
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4799999999999975
No 242
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=77.32 E-value=2.1 Score=36.65 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+||||+++.+++.+..
T Consensus 34 ~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 4799999999999997654
No 243
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=77.30 E-value=1.1 Score=41.62 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+..+
T Consensus 153 GGvGKTT~a~nLA~~La~~ 171 (373)
T 3fkq_A 153 GGVGTSTVAAACAIAHANM 171 (373)
T ss_dssp TTSSHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhC
Confidence 8999999999999865544
No 244
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=77.26 E-value=1.2 Score=41.63 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
||+||||+|..++..+.
T Consensus 118 GGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 118 GGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999998654
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.93 E-value=1.1 Score=41.58 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||+||+.+++...
T Consensus 80 p~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 379999999999998764
No 246
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=76.91 E-value=0.96 Score=40.95 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||.|..++--+..
T Consensus 57 GGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHH
Confidence 899999999888875443
No 247
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=76.91 E-value=0.55 Score=39.43 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+||||+|+.+...+.
T Consensus 9 ~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999988654
No 248
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.85 E-value=1.1 Score=41.35 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||++|+.+++...
T Consensus 59 ppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 59 PTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998763
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=76.75 E-value=1.1 Score=37.51 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+|||||++.+.....
T Consensus 27 PSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred cCCCCHHHHHHHHHhhCC
Confidence 479999999999997544
No 250
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=76.59 E-value=1 Score=37.67 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.++..+.
T Consensus 15 ~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 15 TASGKTTLAQALARTLG 31 (211)
T ss_dssp TTSSHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998544
No 251
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=76.54 E-value=3 Score=40.66 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHH
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 47 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i 47 (377)
.|+|||+|+.++++.... +..+++. +++..+ .+.++++.+
T Consensus 236 ~g~GKT~L~~~ia~~~~~--~~~V~~~-iGER~~---Ev~e~~~~~ 275 (588)
T 3mfy_A 236 AGSGKTVTQHQLAKWSDA--QVVIYIG-CGERGN---EMTDVLEEF 275 (588)
T ss_dssp CSHHHHHHHHHHHHHSSC--SEEEEEE-CCSSSS---HHHHHHHHT
T ss_pred CCCCHHHHHHHHHhccCC--CEEEEEE-ecccHH---HHHHHHHHH
Confidence 689999999998874222 2333333 655431 444554443
No 252
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.51 E-value=1 Score=40.11 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
++|+||||+|+.++++
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999999874
No 253
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=76.04 E-value=1.2 Score=38.49 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+++++.
T Consensus 17 ~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 17 PAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998653
No 254
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=76.02 E-value=1.6 Score=39.83 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++....+.
T Consensus 25 GGvGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTS
T ss_pred CCccHHHHHHHHHHHHHhC
Confidence 8999999999998855443
No 255
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.83 E-value=0.96 Score=38.25 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
++|+|||++|..+++.++.
T Consensus 66 PPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 66 PANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CGGGCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 4799999999999987643
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.73 E-value=2.2 Score=47.33 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc----cCccchhhhHHHHHHHhc-Cc
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD----NNIRNVYDGINMLRVRLR-RK 76 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~k 76 (377)
+|+||||||.+++......-..++|+. .-... + .+. ++.++.... ..+.+.++..+.++...+ .+
T Consensus 392 pGsGKTtLaLq~a~~~~~~G~~vlyis-~E~s~----~--~~~---a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~ 461 (1706)
T 3cmw_A 392 ESSGKTTLTLQVIAAAQREGKTCAFID-AEHAL----D--PIY---ARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 461 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC-TTSCC----C--HHH---HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEE-ccCch----H--HHH---HHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcC
Confidence 799999999999885544333456655 33322 2 221 333322111 122344555555555443 45
Q ss_pred eEEEEEeCCCC
Q 040234 77 KVLVVIDDAAH 87 (377)
Q Consensus 77 ~~LLVLDdv~~ 87 (377)
.-+||+|.+..
T Consensus 462 ~~lVVIDSL~a 472 (1706)
T 3cmw_A 462 VDVIVVDSVAA 472 (1706)
T ss_dssp CSEEEESCSTT
T ss_pred CCEEEECCHHH
Confidence 56999999753
No 257
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.28 E-value=5.7 Score=36.02 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||+..++...+
T Consensus 137 ~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 369999999999998543
No 258
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=75.26 E-value=2.7 Score=35.56 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
+.|+||||+++.+++.+...
T Consensus 11 ~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 46999999999999866543
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.21 E-value=1.2 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+|||||++.+....
T Consensus 12 psGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 37999999999998744
No 260
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=75.18 E-value=1.1 Score=41.31 Aligned_cols=18 Identities=44% Similarity=0.636 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++..+..
T Consensus 11 GGvGKTT~a~nLA~~LA~ 28 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHYFAL 28 (361)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 899999999999986654
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=75.14 E-value=1.2 Score=37.10 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||++.+...+.
T Consensus 30 ~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 30 LSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 379999999999988553
No 262
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=74.87 E-value=2 Score=36.80 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
+.|+||||+++.+++.+...
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CC---CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 47999999999999977654
No 263
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=74.64 E-value=1.3 Score=37.99 Aligned_cols=15 Identities=40% Similarity=0.321 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
..|+|||||++.++.
T Consensus 38 pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 38 GTGTGKTTFAAQFIY 52 (251)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999985
No 264
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=74.58 E-value=2.7 Score=35.93 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+||||+++.+.+.+..
T Consensus 29 ~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 4699999999999997654
No 265
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=74.52 E-value=1.4 Score=36.59 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++....
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 10 PSASGKSSVARRVAAALG 27 (208)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 369999999999988553
No 266
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=74.38 E-value=1.3 Score=36.89 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
+.|+||||+|+.+.+.
T Consensus 20 ~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 20 KIGTGKSTVCEILKNK 35 (192)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4699999999999875
No 267
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=74.20 E-value=1.3 Score=37.27 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
+.|+||||+++.+..
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999976
No 268
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=74.15 E-value=1.3 Score=37.01 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+|||||++.+....
T Consensus 28 pnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERI 44 (207)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 36999999999998744
No 269
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=73.83 E-value=4.7 Score=45.56 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=41.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc----cCccchhhhHHHHHHHhc-Cc
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD----NNIRNVYDGINMLRVRLR-RK 76 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~-~k 76 (377)
+|+||||||.+++......-...+|+. .-... + .+. ++.++.... ..+.+.++..+.+++..+ .+
T Consensus 392 pGsGKTtLaLqia~~~a~~G~~vlyis-~E~s~----~--~~~---a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~ 461 (2050)
T 3cmu_A 392 ESSGKTTLTLQVIAAAQREGKTCAFID-AEHAL----D--PIY---ARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 461 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSCC----C--HHH---HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEE-cCCCH----H--HHH---HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcC
Confidence 799999999999986554323455554 32221 2 221 333322111 122345555566655443 45
Q ss_pred eEEEEEeCCC
Q 040234 77 KVLVVIDDAA 86 (377)
Q Consensus 77 ~~LLVLDdv~ 86 (377)
.-|||+|.+.
T Consensus 462 ~~lIVIDSL~ 471 (2050)
T 3cmu_A 462 VDVIVVDSVA 471 (2050)
T ss_dssp CSEEEESCGG
T ss_pred CcEEEECCHH
Confidence 6699999974
No 270
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=73.76 E-value=1.3 Score=38.37 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.++..+.
T Consensus 30 ~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 479999999999988544
No 271
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.67 E-value=3.8 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
+|+|||||++.++..+..
T Consensus 44 ~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 44 SGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 799999999999985543
No 272
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=73.58 E-value=9 Score=37.95 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=21.8
Q ss_pred EEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 79 LVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 79 LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
+||+|.+.. ...+..+...++ .+.++|+.--..
T Consensus 265 ~lIIDEAsml~~~~~~~Ll~~l~---~~~~liLvGD~~ 299 (608)
T 1w36_D 265 VLVVDEASMIDLPMMSRLIDALP---DHARVIFLGDRD 299 (608)
T ss_dssp EEEECSGGGCBHHHHHHHHHTCC---TTCEEEEEECTT
T ss_pred EEEEechhhCCHHHHHHHHHhCC---CCCEEEEEcchh
Confidence 899999875 344566666653 466777765443
No 273
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=73.52 E-value=1.4 Score=35.49 Aligned_cols=16 Identities=50% Similarity=0.499 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||++.++..+
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5999999999999855
No 274
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=73.51 E-value=2.9 Score=36.05 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+||||+++.+++.+..
T Consensus 35 ~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp STTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999999986654
No 275
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=73.49 E-value=1.5 Score=37.76 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+++.+++.+.
T Consensus 10 ~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 369999999999998664
No 276
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=73.40 E-value=1.1 Score=41.22 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHHchhcccc
Q 040234 1 MGGLGKTTLARVVYDLISHEF 21 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f 21 (377)
+.|+||||+++.++..+.-.|
T Consensus 32 ~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCCe
Confidence 579999999999998665444
No 277
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.33 E-value=1.4 Score=40.30 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||||..+++++.
T Consensus 48 PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp STTSSHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 469999999999998654
No 278
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.09 E-value=1.2 Score=40.35 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=18.2
Q ss_pred eeecCCCChhhhHHHHHHHhcC
Q 040234 125 VYKLEALTYDEAFRLLCLKAFD 146 (377)
Q Consensus 125 ~~~l~~L~~~ea~~L~~~~~~~ 146 (377)
.+.++.++.++-.+++......
T Consensus 179 ~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 179 KIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEECCCCCHHHHHHHHHHHHCT
T ss_pred EEEcCCCCHHHHHHHHHhcccc
Confidence 5889999999999999887643
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=72.67 E-value=1.5 Score=35.97 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||+..+...+.
T Consensus 15 sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 15 SGTGKTTLLKKLIPALC 31 (174)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 69999999999998654
No 280
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=72.49 E-value=2.1 Score=38.89 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++....+.
T Consensus 28 GGvGKTTva~~LA~~lA~~ 46 (329)
T 2woo_A 28 GGVGKTTTSCSLAIQMSKV 46 (329)
T ss_dssp SSSSHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHHC
Confidence 8999999999998855443
No 281
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=72.44 E-value=1.6 Score=37.07 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+|||||++.+....
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 36999999999998744
No 282
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.33 E-value=1.5 Score=39.86 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||||..++++..
T Consensus 13 ptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 13 PTAAGKTDLAMALADALP 30 (323)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998543
No 283
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=72.24 E-value=1.6 Score=41.42 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
++|+|||++|+.++......
T Consensus 58 ppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 47999999999999866443
No 284
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=72.18 E-value=2.2 Score=38.31 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||||+..++...+
T Consensus 110 ~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 379999999999997444
No 285
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=72.05 E-value=2.1 Score=40.53 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+||||+|..++...+..
T Consensus 107 ~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 107 IQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CSSSSTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 37999999999999865433
No 286
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=71.99 E-value=11 Score=35.79 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
.+|+|||++.++.++
T Consensus 169 ~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 169 VPGCGKTKEILSRVN 183 (446)
T ss_dssp CTTSCHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHhc
Confidence 379999999998886
No 287
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=71.93 E-value=1.5 Score=36.94 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||||+..++....
T Consensus 47 ~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 79999999999998543
No 288
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=71.90 E-value=2.2 Score=39.15 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
||+||||+|..++....
T Consensus 27 GGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 27 GGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999988655
No 289
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=71.70 E-value=2.1 Score=35.92 Aligned_cols=19 Identities=37% Similarity=0.380 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
+|+|||||+..+.......
T Consensus 39 ~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 39 IGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp TTSCHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHhccC
Confidence 7999999999998865444
No 290
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=71.65 E-value=4.4 Score=39.66 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||+|+.++++..
T Consensus 241 ~g~GKT~L~~~ia~~~ 256 (600)
T 3vr4_A 241 FGAGKTVVQHQIAKWS 256 (600)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHhcc
Confidence 6999999999998853
No 291
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=71.41 E-value=1.6 Score=42.26 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
++|+||||+|+.+++++..
T Consensus 403 lsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 5799999999999997754
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=71.38 E-value=1.7 Score=38.88 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+||||||+.+...+.
T Consensus 40 sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 40 QGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 69999999999988554
No 293
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=71.28 E-value=1.7 Score=37.57 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||++.++..+
T Consensus 34 ~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 34 TASGKSTVCEKIMELL 49 (245)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999998744
No 294
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=70.70 E-value=1.8 Score=38.21 Aligned_cols=18 Identities=39% Similarity=0.479 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+||||||..++..+.
T Consensus 38 ~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 38 PGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 379999999999987443
No 295
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.50 E-value=3.2 Score=46.15 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHchhccccccceEEecchhhcccccCHHHHHHHHHHHHhhccc----cCccchhhhHHHHHHHhcC-c
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD----NNIRNVYDGINMLRVRLRR-K 76 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~~-k 76 (377)
.|+||||||.++..+.+..=...+|+. .-+.. +.. .++.++.... ..+.+-++..+.....++. .
T Consensus 1440 ~~sGkttl~~~~~a~~~~~g~~~~~i~-~e~~~----~~~-----~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~ 1509 (1706)
T 3cmw_A 1440 ESSGKTTLTLQVIAAAQREGKTCAFID-AEHAL----DPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1509 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEC-TTSCC----CHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEe-cCCCC----CHH-----HHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCC
Confidence 689999999999986665555666765 32221 222 1455443322 2344556666666666654 4
Q ss_pred eEEEEEeCCC
Q 040234 77 KVLVVIDDAA 86 (377)
Q Consensus 77 ~~LLVLDdv~ 86 (377)
.-++|+|-|.
T Consensus 1510 ~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1510 VDVIVVDSVA 1519 (1706)
T ss_dssp CSEEEESCST
T ss_pred CCEEEEccHH
Confidence 5688888874
No 296
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=70.37 E-value=1.8 Score=39.04 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.+...+.
T Consensus 99 sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 99 VAVGKSTTARVLQALLA 115 (312)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhcc
Confidence 69999999999998543
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.33 E-value=2 Score=35.67 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||++.++...+
T Consensus 9 ~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCSSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhcc
Confidence 369999999999998543
No 298
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=70.07 E-value=1.9 Score=36.63 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||.+.+.....
T Consensus 24 psGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 379999999999998554
No 299
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=70.01 E-value=15 Score=36.05 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=36.7
Q ss_pred eEEEEEeCCCCh-----hh----hhHhhCCCCCCCCCCeEEEEecchhH--Hh-hC--CCCCeeecCCCChhhhHHHHH
Q 040234 77 KVLVVIDDAAHP-----DH----LRRLVGEPDWFGPGSRIIITTRNEHL--LK-LH--PVKKVYKLEALTYDEAFRLLC 141 (377)
Q Consensus 77 ~~LLVLDdv~~~-----~~----~~~l~~~l~~~~~gs~IIvTTR~~~v--~~-~~--~~~~~~~l~~L~~~ea~~L~~ 141 (377)
..+||+|++.+. .. +..+... ...-|-.+|++|....+ .. .+ .....+.+..-++.++..++.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~--GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQK--ARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHH--CTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHH--HhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 478999999763 11 2222211 12457889998887642 11 00 223346677778888877763
No 300
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=70.01 E-value=1.8 Score=36.30 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+||||||.+++++..
T Consensus 42 psGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 42 DSGVGKSETALELVQRGH 59 (205)
T ss_dssp CCTTTTHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 379999999999998543
No 301
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=69.98 E-value=1.9 Score=39.45 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||||..++.++.
T Consensus 15 ptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKFN 32 (340)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHHHHcC
Confidence 369999999999998653
No 302
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=69.91 E-value=1.9 Score=33.80 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||+..+..
T Consensus 12 ~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 12 GGVGKSALTIQLIQ 25 (166)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 79999999999986
No 303
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=69.90 E-value=1.5 Score=41.09 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=8.1
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
||+||||+|..++..+.
T Consensus 121 GGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 121 GGVSKTVSTVTLAHALR 137 (403)
T ss_dssp -------CHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH
Confidence 89999999999998654
No 304
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=69.60 E-value=1.2 Score=38.85 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+++.+.
T Consensus 32 ~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 32 NIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp STTSSHHHHHTTTGGGCT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 369999999999988664
No 305
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=69.59 E-value=2.7 Score=38.69 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
||+||||+|..++....
T Consensus 27 GGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 27 GGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999998887655
No 306
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=69.51 E-value=2 Score=38.09 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
+.|+||||+|+.+..
T Consensus 83 ~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 83 ISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999983
No 307
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.34 E-value=11 Score=36.43 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
+|+||||++..++...+.
T Consensus 110 ~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 110 QGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 799999999999975543
No 308
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=69.26 E-value=2.1 Score=36.45 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 37 pPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 48999999999999754
No 309
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=69.15 E-value=1.9 Score=35.11 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||.+.+..
T Consensus 11 ~gvGKStLl~~l~~ 24 (184)
T 2zej_A 11 TGSGKTTLLQQLMK 24 (184)
T ss_dssp TTSSHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhc
Confidence 79999999999987
No 310
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=68.56 E-value=5.6 Score=33.69 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+||||++..+++.+..
T Consensus 13 ~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CSSSSHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 4799999999999997765
No 311
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.49 E-value=4.7 Score=39.15 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||++.++....
T Consensus 289 ~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 289 ATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 369999999999998544
No 312
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=68.18 E-value=2.8 Score=37.60 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||++.++..++
T Consensus 108 ~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 369999999999998544
No 313
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=68.10 E-value=2.3 Score=36.55 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.++++.
T Consensus 16 ~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKF 32 (230)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998755
No 314
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=68.05 E-value=2.7 Score=34.58 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCh--hhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 75 RKKVLVVIDDAAHP--DHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 75 ~k~~LLVLDdv~~~--~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
++.-+|++|.+... +.++.+.... ..+..|++|.+..
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~---~~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLL---DRGIDVFCAGLDL 113 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEEESB
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHH---HCCCCEEEEeecc
Confidence 45569999998653 3333332111 1267889888743
No 315
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=67.92 E-value=2.4 Score=38.62 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
-|+||||+++.+++.....
T Consensus 16 dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 16 YGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp TTSSHHHHHHHHHSGGGCS
T ss_pred CCCCHHHHHHHHHHHhccC
Confidence 4999999999999876653
No 316
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=67.67 E-value=2.2 Score=33.34 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 10 ~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 10 PNVGKSSLFNRLLK 23 (161)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999999986
No 317
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=67.64 E-value=2.8 Score=40.78 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+++.+.
T Consensus 43 lpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 589999999999998654
No 318
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=67.43 E-value=2.3 Score=33.79 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||.+.+..
T Consensus 12 ~gvGKStL~~~l~~ 25 (165)
T 2wji_A 12 PNVGKSTIFNALTG 25 (165)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhC
Confidence 79999999999987
No 319
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=67.40 E-value=2.3 Score=34.83 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||.+.+..
T Consensus 38 ~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 38 SGVGKSNLLSRFTR 51 (191)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 320
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=66.84 E-value=2.5 Score=34.61 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
.+|+||||||..+.++
T Consensus 24 ~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 24 EANIGKSELSLALIDR 39 (181)
T ss_dssp SSSSSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHc
Confidence 3799999999999873
No 321
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=66.82 E-value=2.7 Score=35.14 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
+.|+||||+|+.+++++.-.
T Consensus 14 ~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCcC
Confidence 46999999999999976543
No 322
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=66.79 E-value=7.1 Score=38.03 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||+|+.++++..
T Consensus 230 ~g~GKT~l~~~ia~~~ 245 (578)
T 3gqb_A 230 FGSGKSVTQQSLAKWS 245 (578)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHhcc
Confidence 6999999999998753
No 323
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=66.59 E-value=3.1 Score=36.62 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+.+.
T Consensus 92 gG~GKTt~a~nLA~~lA~~ 110 (271)
T 3bfv_A 92 PGAGKSTIAANLAVAYAQA 110 (271)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhC
Confidence 8999999999999866543
No 324
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=66.52 E-value=3 Score=39.87 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+++...
T Consensus 47 lpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 579999999999998654
No 325
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=66.45 E-value=2.5 Score=38.16 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||||..++++.
T Consensus 11 ptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CTTSCHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHhC
Confidence 46999999999999854
No 326
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=66.29 E-value=2.4 Score=34.41 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||+..+..
T Consensus 30 ~~~GKSsli~~l~~ 43 (190)
T 3con_A 30 GGVGKSALTIQLIQ 43 (190)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 79999999999986
No 327
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=66.15 E-value=3.1 Score=37.63 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=18.7
Q ss_pred CCCcHHHHHHHHHchhccccccceEEe
Q 040234 2 GGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
+|+||||++..++..+... ...+.+.
T Consensus 114 ~G~GKTT~~~~LA~~l~~~-g~kVlli 139 (320)
T 1zu4_A 114 NGTGKTTSLAKMANYYAEL-GYKVLIA 139 (320)
T ss_dssp TTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHC-CCeEEEE
Confidence 7999999999999865543 3344443
No 328
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=66.07 E-value=2.2 Score=38.83 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
-|+||||+++.+++.+..
T Consensus 13 dGsGKTT~~~~La~~L~~ 30 (331)
T 1e2k_A 13 HGMGKTTTTQLLVALGSR 30 (331)
T ss_dssp TTSSHHHHHHHHTC----
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 499999999999986654
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=65.95 E-value=1.5 Score=35.77 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+|||||++.+.....
T Consensus 11 SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 11 SDSGKTTLITRMMPILR 27 (171)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 68999999999998544
No 330
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=65.90 E-value=2.5 Score=36.09 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=27.1
Q ss_pred HHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHH
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLL 117 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~ 117 (377)
+-+.|..++=+|+||.--. .. .+..++..+. ..|..||++|.+...+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN--EGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHH
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHH
Confidence 4455566777999999643 21 2222222221 1266788888887655
No 331
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=65.78 E-value=2.5 Score=38.29 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
.|+||||||+.+...+.
T Consensus 101 sGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 101 VAVGKSTTSRVLKALLS 117 (321)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999987554
No 332
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=65.72 E-value=2.6 Score=37.99 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||||..++++.
T Consensus 18 ptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 18 PTASGKTALAIELRKIL 34 (316)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHhC
Confidence 36999999999999854
No 333
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=65.71 E-value=3.1 Score=36.16 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||.+.++.-+
T Consensus 35 NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 35 NGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTSSHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHhCCC
Confidence 6999999999998744
No 334
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=65.51 E-value=2.5 Score=34.78 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||.+.+..
T Consensus 14 ~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 14 SGVGKSNLLSRFTR 27 (199)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 335
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=65.47 E-value=3.7 Score=36.45 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.3
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+.+.
T Consensus 102 gG~GKTtva~nLA~~lA~~ 120 (286)
T 3la6_A 102 PSIGMTFVCANLAAVISQT 120 (286)
T ss_dssp SSSSHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHhC
Confidence 8999999999999866554
No 336
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=65.34 E-value=2.5 Score=36.36 Aligned_cols=49 Identities=10% Similarity=0.298 Sum_probs=27.5
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.|..++=+|+||.--. . ..+..++..+.. ..|..||++|.+..++.
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHd~~~~~ 210 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE-EDGKTVVVVTHDINVAR 210 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEECSCHHHHT
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEcCCHHHHH
Confidence 4455566777899999643 1 122222222110 12667888888877653
No 337
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=65.25 E-value=2.8 Score=33.88 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 16 ~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 16 PNVGKSTIFNALTG 29 (188)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999999987
No 338
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=65.22 E-value=2.8 Score=36.24 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=26.8
Q ss_pred HHHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHH
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLL 117 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~ 117 (377)
.+-+.+..++=+|+||.--. .. .+..++..+.. ..|..||++|.+...+
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR-EFDVPILHVTHDLIEA 190 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHH
Confidence 34555667788999999643 21 22222222110 1255688888876543
No 339
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=65.03 E-value=4.4 Score=34.79 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=20.3
Q ss_pred EEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 78 VLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 78 ~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
=+|++|.+.-......+...+. ..|-.||+|.++-
T Consensus 92 dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~~ 126 (234)
T 2orv_A 92 AVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALDG 126 (234)
T ss_dssp SEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCSB
T ss_pred CEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEeccc
Confidence 4999999743211322222222 2466899999874
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=64.89 E-value=2.7 Score=33.05 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 14 ~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 14 GAVGKSSMIQRYCK 27 (168)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999987
No 341
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=64.82 E-value=17 Score=29.62 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=8.8
Q ss_pred CCCcHHHHHHHH
Q 040234 2 GGLGKTTLARVV 13 (377)
Q Consensus 2 gGiGKTtLA~~v 13 (377)
.|.|||..+...
T Consensus 47 TGsGKT~~~~~~ 58 (207)
T 2gxq_A 47 TGTGKTLAFALP 58 (207)
T ss_dssp TTSCHHHHHHHH
T ss_pred CCChHHHHHHHH
Confidence 599999875443
No 342
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.81 E-value=1.8 Score=36.91 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=8.7
Q ss_pred CCCCcHHHHHHHHH-chh
Q 040234 1 MGGLGKTTLARVVY-DLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~-~~~ 17 (377)
..|+|||||++.+. ...
T Consensus 35 p~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 35 PSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp SCC----CHHHHHHC---
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 36999999999999 643
No 343
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=64.54 E-value=3.5 Score=36.83 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++..+...
T Consensus 114 gG~GKTtva~nLA~~lA~~ 132 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQS 132 (299)
T ss_dssp SSSCHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHhC
Confidence 7999999999999866543
No 344
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=64.42 E-value=2.4 Score=39.38 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHchhccc
Q 040234 2 GGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~~ 20 (377)
||+||||+|..++......
T Consensus 11 GG~GKTt~a~~la~~la~~ 29 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQ 29 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHC
Confidence 8999999999988754433
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=64.37 E-value=2.8 Score=37.65 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||++.+...+.
T Consensus 88 ~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 88 SVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 369999999999988554
No 346
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=64.17 E-value=2.1 Score=36.58 Aligned_cols=16 Identities=31% Similarity=0.160 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
..|+|||||++.++..
T Consensus 28 ~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 28 NIGSGKTTYLNHFEKY 43 (230)
T ss_dssp STTSCHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHhc
Confidence 3699999999998875
No 347
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=63.88 E-value=2.3 Score=35.89 Aligned_cols=40 Identities=20% Similarity=0.426 Sum_probs=22.8
Q ss_pred hcCceEEEEEeCCCC--hhhhhHhhCCCCCCCCCCeEEEEecchhH
Q 040234 73 LRRKKVLVVIDDAAH--PDHLRRLVGEPDWFGPGSRIIITTRNEHL 116 (377)
Q Consensus 73 l~~k~~LLVLDdv~~--~~~~~~l~~~l~~~~~gs~IIvTTR~~~v 116 (377)
|..++-+|+||..-. ...+..++..+ ..|..|| +|.+...
T Consensus 119 L~~~p~lllLDEPts~~~~~l~~~l~~l---~~g~tii-vtHd~~~ 160 (208)
T 3b85_A 119 RTLNDAFVILDEAQNTTPAQMKMFLTRL---GFGSKMV-VTGDITQ 160 (208)
T ss_dssp CCBCSEEEEECSGGGCCHHHHHHHHTTB---CTTCEEE-EEEC---
T ss_pred HhcCCCEEEEeCCccccHHHHHHHHHHh---cCCCEEE-EECCHHH
Confidence 344677999999644 33444444444 2466777 7776543
No 348
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=63.80 E-value=2.5 Score=40.84 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
.+|+|||+||+.+++...
T Consensus 49 pPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 49 PPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CSSSSHHHHHHHGGGGBS
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 479999999999998663
No 349
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=63.68 E-value=3 Score=33.07 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 13 ~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 13 PGVGKTSLASLFAG 26 (175)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCccHHHHHHHHhc
Confidence 69999999999986
No 350
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=63.43 E-value=3.2 Score=34.76 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+|+.++.+.
T Consensus 11 ~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 11 PAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 46999999999998754
No 351
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.36 E-value=1.8 Score=39.34 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHchhc
Q 040234 2 GGLGKTTLARVVYDLIS 18 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~ 18 (377)
+|+|||+||+.+++...
T Consensus 54 ~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 54 RGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGGCTTHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHhCc
Confidence 69999999999998554
No 352
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=63.18 E-value=3.9 Score=37.63 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+|||||+..++..++
T Consensus 165 ~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhcc
Confidence 369999999999998544
No 353
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=63.07 E-value=3.2 Score=32.72 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 12 ~~~GKssli~~l~~ 25 (172)
T 2erx_A 12 GGVGKSSLVLRFVK 25 (172)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999986
No 354
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=63.02 E-value=2.9 Score=36.57 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=27.4
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.|..++=+|+||.--. . ..+..++..+. ..|..||++|.+...+.
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA--EEGKTMVVVTHEMGFAR 217 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCCEEEECSCHHHHH
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 3445566777999999643 1 12222222221 12567888888865544
No 355
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=62.92 E-value=3 Score=38.68 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
-|+||||+++.+++.+..
T Consensus 58 dGsGKTT~~~~Lae~L~~ 75 (376)
T 1of1_A 58 HGMGKTTTTQLLVALGSR 75 (376)
T ss_dssp TTSSHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 499999999999986654
No 356
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=62.86 E-value=3.1 Score=32.58 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 13 ~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 13 GGVGKSALTLQFMY 26 (168)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999986
No 357
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=62.75 E-value=3 Score=36.63 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
..|+|||||++.++.
T Consensus 45 ~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 45 PNGAGKSTLLRLLTG 59 (266)
T ss_dssp CTTSCHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHhc
Confidence 369999999999987
No 358
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=62.56 E-value=3.1 Score=35.23 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||.+.++.
T Consensus 44 NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 44 NGIGKTTLLKTIST 57 (214)
T ss_dssp TTSSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 359
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=62.53 E-value=3.1 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
+.|+||||+++.++.++
T Consensus 24 ~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDF 40 (236)
T ss_dssp SSCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 46999999999998754
No 360
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=62.46 E-value=3.3 Score=35.97 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.|..++=+|+||..-. . ..+..++..+. ..|..||++|.+...+..
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~ 208 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR--GPNFGALVITHYQRILNY 208 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC--STTCEEEEECSSSGGGGT
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHH
Confidence 3444556677999999633 1 22223332222 236678888888665544
No 361
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=62.38 E-value=3.1 Score=36.79 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=27.6
Q ss_pred HHHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
.+-+.|..++=+|+||.--. .. .+..++..+.. ..|..||++|.+-..+.
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK-ELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHCCEEEEEESCCSSGG
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHh-hCCCEEEEEecCHHHHH
Confidence 34555677888999999643 21 22222222210 12667888887755443
No 362
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=62.34 E-value=3.1 Score=35.84 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=27.0
Q ss_pred HHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.|..++=+|+||+.-. .. .+..++........|..||++|.+...+.
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH
Confidence 3445556677899999743 22 22222210011123667888888765544
No 363
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=62.08 E-value=3.1 Score=41.34 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
++|+||||+|+.+++++
T Consensus 60 lsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYL 76 (630)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999999866
No 364
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=61.90 E-value=3.5 Score=32.47 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 11 ~~~GKSsli~~l~~ 24 (169)
T 3q85_A 11 SGVGKSTLAGTFGG 24 (169)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999874
No 365
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=61.76 E-value=3.2 Score=35.80 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=26.6
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHH
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLL 117 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~ 117 (377)
+-+.|..++=+|+||.--. . ..+..++..+. ..|..||++|.+...+
T Consensus 150 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tvi~vtHd~~~~ 202 (240)
T 1ji0_A 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN--QEGTTILLVEQNALGA 202 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHH
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHH
Confidence 4455667778999999643 1 12222222221 1355688888876443
No 366
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=61.70 E-value=3.2 Score=40.87 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+.+++.
T Consensus 404 lsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 404 YMNSGKDAIARALQVTLN 421 (573)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 579999999999998765
No 367
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=61.66 E-value=3.2 Score=36.37 Aligned_cols=48 Identities=10% Similarity=0.294 Sum_probs=28.1
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.|..++=+|+||.--. . ..+..++..+. ..|..||++|.+...+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA--NEGMTMVVVTHEMGFAR 223 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHH
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHH
Confidence 4455667778999999643 1 12222222221 22667899998865544
No 368
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=61.65 E-value=3.5 Score=42.48 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.+|+|||+||+.+++.....
T Consensus 519 ppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 519 PPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 37999999999999976443
No 369
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=61.48 E-value=3.5 Score=36.18 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=29.4
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.|..++=+|+||..-. . ..+..++..+. ..|..||++|.+...+..
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~--~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR--DGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC--CSSCEEEEECSSGGGGGT
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeeCHHHHHh
Confidence 3445556777999999643 1 22333333332 236778999988765543
No 370
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=61.46 E-value=3.5 Score=33.46 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 57 ~g~GKSsll~~l~~ 70 (193)
T 2ged_A 57 QNSGKTSLLTLLTT 70 (193)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 371
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=61.43 E-value=4 Score=40.25 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHchhcc
Q 040234 2 GGLGKTTLARVVYDLISH 19 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~~~ 19 (377)
||+||||+|..++....+
T Consensus 17 GGvGKTT~a~~lA~~lA~ 34 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAE 34 (589)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 899999999998885443
No 372
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=61.34 E-value=3.3 Score=35.37 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=28.6
Q ss_pred HHHHhcCceEEEEEeCCCC---hhhhhHhhCC-CCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PDHLRRLVGE-PDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~~~~~l~~~-l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.+..++=+++||+.-. ...-..+... +.....+..||++|.+...+..
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 4455566777999999754 2222222221 1111235678888888765543
No 373
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=61.28 E-value=3.2 Score=36.15 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=26.0
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHH
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLL 117 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~ 117 (377)
+-+.|..++=+|+||.--. . ..+..++..+. ..|..||++|.+...+
T Consensus 164 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCSTT
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHH
Confidence 3444556677999999643 1 12222222221 2266788888875443
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=61.16 E-value=3.5 Score=34.35 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
.+|+|||||...+...
T Consensus 20 ~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 20 PQNSGKTSLLTLLTTD 35 (218)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 3699999999999873
No 375
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=61.14 E-value=3.1 Score=32.71 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||.+.+..
T Consensus 11 ~~~GKSsli~~l~~ 24 (166)
T 3q72_A 11 PGVGKSALARIFGG 24 (166)
T ss_dssp TTSSHHHHHHHHCC
T ss_pred CCCCHHHHHHHHcC
Confidence 69999999999875
No 376
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=60.89 E-value=3.7 Score=32.31 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 15 ~~~GKssli~~l~~ 28 (170)
T 1z08_A 15 GCVGKTSLVLRYCE 28 (170)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999986
No 377
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=60.78 E-value=3.7 Score=33.20 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 16 ~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 16 SQCGKTALLHVFAK 29 (184)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 378
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=60.76 E-value=3.8 Score=32.83 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||.+.+..
T Consensus 13 ~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 13 PNAGKSSLLNALAG 26 (172)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 79999999999987
No 379
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=60.73 E-value=3.6 Score=33.15 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 10 ~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 10 SNVGKSTLIYRLTG 23 (190)
T ss_dssp TTSSHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999999987
No 380
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=60.72 E-value=3.4 Score=35.62 Aligned_cols=48 Identities=8% Similarity=0.183 Sum_probs=27.0
Q ss_pred HHHHhcCceEEEEEeCCCC------hhhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH------PDHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~------~~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.|..++=+|+||+.-. ...+..++..+. .|..||++|.+...+..
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHHHH
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHHh
Confidence 3344555667899998643 122222222221 35678888888765543
No 381
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=60.68 E-value=3.4 Score=35.81 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.|..++=+|+||..-. . ..+..++..+ ..|..||++|.+...+.
T Consensus 156 iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~---~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 156 IARALVNNPKILIFDEATSALDYESEHVIMRNMHKI---CKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp HHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH---HTTSEEEEECSSGGGGT
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH---cCCCEEEEEeCCHHHHH
Confidence 4445566777999999744 1 1222222222 13567888888766554
No 382
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=60.54 E-value=2.6 Score=41.35 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
+.|+|||||++.++..+..
T Consensus 377 ~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 377 LSGAGKSTLARALAARLME 395 (552)
T ss_dssp SSCHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHhhcc
Confidence 4799999999999987653
No 383
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=60.48 E-value=3.6 Score=32.20 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||+|...+..
T Consensus 9 ~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 9 DAAGKTTILYKLKL 22 (164)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999976
No 384
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=60.47 E-value=3.6 Score=32.22 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 12 ~~~GKssli~~l~~ 25 (167)
T 1c1y_A 12 GGVGKSALTVQFVQ 25 (167)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999986
No 385
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=60.37 E-value=3.5 Score=35.96 Aligned_cols=49 Identities=14% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.|..++=+|+||..-. . ..+..++..+. ..|..||++|.+...+..
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tiiivtHd~~~~~~ 211 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEF 211 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEEECCHHHHTT
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHHH
Confidence 4455667778999999643 1 12222222221 236678889988665544
No 386
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=60.35 E-value=3.8 Score=33.69 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
+|+|||++|.+++.+
T Consensus 8 ~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 8 ARSGKSRHAEALIGD 22 (180)
T ss_dssp TTSSHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHhc
Confidence 689999999999875
No 387
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=60.31 E-value=3.9 Score=31.94 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 12 ~~~GKSsli~~l~~ 25 (167)
T 1kao_A 12 GGVGKSALTVQFVT 25 (167)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 68999999999886
No 388
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=60.05 E-value=3.7 Score=33.36 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 29 ~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 29 LSSGKSALVHRYLT 42 (184)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999988876
No 389
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=59.94 E-value=3.9 Score=32.10 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 12 ~~~GKssli~~l~~ 25 (170)
T 1ek0_A 12 AAVGKSSIVLRFVS 25 (170)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999886
No 390
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=59.72 E-value=3.8 Score=32.63 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 18 ~~~GKssli~~l~~ 31 (181)
T 2fn4_A 18 GGVGKSALTIQFIQ 31 (181)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 391
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=59.52 E-value=3.9 Score=33.04 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 32 ~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 32 SNVGKSSLLNALFN 45 (195)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999987
No 392
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=59.42 E-value=4.1 Score=32.01 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 15 ~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 15 TGVGKSSIMWRFVE 28 (170)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999987
No 393
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=59.41 E-value=3.9 Score=37.68 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHhcCceEEEEEeCCCC---h---hhhh-HhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---P---DHLR-RLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~---~~~~-~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
.+-+.|..++=+|+||.--. . .++. .+..... ..|..||++|.+...+..
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~--~~g~tvi~vTHd~~ea~~ 204 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR--ANGKSAVFVSHDREEALQ 204 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHH
Confidence 34556677788999999643 1 1222 2222111 236678888888655443
No 394
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=59.39 E-value=4.2 Score=32.37 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 15 ~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 15 GASGKTSLTTCFAQ 28 (178)
T ss_dssp TTSSHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 395
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=59.23 E-value=1.9 Score=38.45 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=12.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
..|+||||+|+.+.+.+.
T Consensus 13 ~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 13 SSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CC---CCTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 369999999999988543
No 396
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=59.16 E-value=3.8 Score=36.28 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||.+.++.
T Consensus 56 NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 56 NGAGKTTLLNILNA 69 (279)
T ss_dssp TTSSHHHHHHHHTT
T ss_pred CCCcHHHHHHHHhC
Confidence 69999999999987
No 397
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=59.15 E-value=7.2 Score=38.77 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=19.8
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEec
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLAD 29 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~~ 29 (377)
++|.|||+++..+...+...-...+.++.
T Consensus 203 ppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 203 PPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 47999999988887755433344566663
No 398
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=59.09 E-value=3.7 Score=35.85 Aligned_cols=15 Identities=40% Similarity=0.848 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
.|+|||||.+.++.-
T Consensus 55 nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 55 TGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTSSHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHhcc
Confidence 699999999999874
No 399
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=59.06 E-value=4.1 Score=32.43 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 17 ~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 17 VDHGKTTLLDAIRH 30 (178)
T ss_dssp TTTTHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999999986
No 400
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=59.02 E-value=3.7 Score=35.96 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHHHhcCceEEEEEeCCCC---hh---hhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PD---HLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~---~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.|..++=+|+||..-. .. .+..++..+. ..|..||++|.+...+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK--TLGKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCTTTG
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHH
Confidence 4455667778999999743 21 2222222221 12667888888765443
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=58.94 E-value=4.1 Score=33.08 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 32 ~~~GKSsli~~l~~ 45 (195)
T 1svi_A 32 SNVGKSSFINSLIN 45 (195)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999999986
No 402
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=58.85 E-value=4 Score=32.52 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 17 ~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 17 SGVGKTSLMHRYVN 30 (182)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 403
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=58.84 E-value=4.7 Score=32.60 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||||.+.+....
T Consensus 23 ~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 23 GLSGKTTNLKWIYSKV 38 (198)
T ss_dssp TTSSHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhc
Confidence 6999999997776543
No 404
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=58.79 E-value=21 Score=29.80 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=14.7
Q ss_pred eEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecch
Q 040234 77 KVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNE 114 (377)
Q Consensus 77 ~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~ 114 (377)
+...+..+.....++..+. .+..|+|+|-..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~-------~~~~iiv~Tp~~ 153 (228)
T 3iuy_A 123 KSICIYGGRNRNGQIEDIS-------KGVDIIIATPGR 153 (228)
T ss_dssp CEEEECC------CHHHHH-------SCCSEEEECHHH
T ss_pred eEEEEECCCChHHHHHHhc-------CCCCEEEECHHH
Confidence 4455555544444444442 246799999755
No 405
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=58.75 E-value=3.8 Score=36.06 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=32.0
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhhCCCCCeeec
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKLHPVKKVYKL 128 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~~~~~~~~~l 128 (377)
+-+.|..++=+|+||..-. . ..+..++..+.. ..|..||++|.+...+.. ..+++.+
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~g~tviivtHd~~~~~~--~d~v~~l 229 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE-WASRTVLLITQQLSLAER--AHHILFL 229 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT-TTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 4455667778999999743 2 222333322211 236678888888766543 3344444
No 406
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=58.75 E-value=3.6 Score=33.90 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 34 ~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 34 DNAGKTTLLHMLKD 47 (198)
T ss_dssp TTSSHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999986
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=58.74 E-value=4 Score=33.31 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 32 ~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 32 DNAGKTTLLHMLKN 45 (190)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999986
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=58.72 E-value=4.1 Score=31.99 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 15 ~~~GKssli~~l~~ 28 (170)
T 1r2q_A 15 SAVGKSSLVLRFVK 28 (170)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 68999999999986
No 409
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=58.72 E-value=3.9 Score=35.57 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=27.6
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
+-+.|..++=+|+||..-. . ..+..++..+.. ..|..||++|.+...+.
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQPNQVV 193 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESCHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHH
Confidence 4455666777999999743 1 122222222211 12667888888865543
No 410
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=58.67 E-value=4 Score=33.16 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 30 ~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 30 RGAGKSALTVKFLT 43 (187)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHh
Confidence 69999999998886
No 411
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=58.50 E-value=4 Score=37.89 Aligned_cols=17 Identities=41% Similarity=0.378 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+|||||++.++...
T Consensus 177 ~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 177 PIDSGKTTLAAALLELC 193 (377)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 47999999999999743
No 412
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=58.42 E-value=4.1 Score=32.34 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 24 ~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 24 MGVGKSCLLHQFTE 37 (179)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 68999999999986
No 413
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=58.27 E-value=4.2 Score=32.34 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 16 ~~~GKSsli~~l~~ 29 (177)
T 1wms_A 16 GGVGKSSLMNRYVT 29 (177)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999986
No 414
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=58.10 E-value=5.7 Score=32.82 Aligned_cols=14 Identities=36% Similarity=0.430 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|.|||.++...+.
T Consensus 57 tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 57 TGSGKTRVAVYIAK 70 (216)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 58999999887776
No 415
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=58.10 E-value=3.7 Score=33.16 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
+|+|||||...+...
T Consensus 25 ~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 25 DNAGKTTLLKQLASE 39 (181)
T ss_dssp TTSSHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999873
No 416
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=58.04 E-value=4.2 Score=31.93 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 12 ~~~GKssli~~l~~ 25 (170)
T 1g16_A 12 SGVGKSCLLVRFVE 25 (170)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 417
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=57.98 E-value=4.2 Score=32.01 Aligned_cols=14 Identities=36% Similarity=0.366 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 16 ~~~GKssl~~~l~~ 29 (171)
T 1upt_A 16 DGAGKTTILYRLQV 29 (171)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999976
No 418
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=57.90 E-value=3.3 Score=33.11 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||+|...+..
T Consensus 16 ~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 16 ARSGKSSLIHRFLT 29 (178)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 68999999999987
No 419
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=57.89 E-value=4 Score=37.53 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
.|+|||||++.++...
T Consensus 179 nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 179 ESSGKSVLVNKLAAVF 194 (365)
T ss_dssp TTSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999998844
No 420
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=57.68 E-value=4.4 Score=37.93 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||||..++.+..
T Consensus 10 ptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 10 TTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CSSSSHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHCC
Confidence 369999999999998543
No 421
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=57.53 E-value=4.7 Score=34.33 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
+.|+||||+|+.+++++.
T Consensus 22 ~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 22 EYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 469999999999998664
No 422
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=57.47 E-value=4.4 Score=33.16 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 15 ~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 15 QGVGKSTLANIFAG 28 (192)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999874
No 423
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=57.31 E-value=4.3 Score=35.59 Aligned_cols=15 Identities=53% Similarity=0.725 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
.|+|||||.+.++.-
T Consensus 39 NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 39 NGSGKTTLLRAISGL 53 (263)
T ss_dssp TTSSHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999874
No 424
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=57.12 E-value=4.4 Score=32.63 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 20 ~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 20 SGVGKTSVLYQYTD 33 (195)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999986
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=57.12 E-value=4.4 Score=32.41 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 27 ~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 27 GGVGKSALTLQFMY 40 (187)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhh
Confidence 69999999999986
No 426
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=57.00 E-value=4.5 Score=37.19 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=28.4
Q ss_pred HHHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
.+-+.|..++=+|+||.--. . ..+..++..+.. ..|..||++|.+...+..
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD-EMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEECCCHHHHHH
Confidence 34556677788999999643 1 122222221110 125678888888665443
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=56.92 E-value=4.5 Score=32.49 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 19 ~~~GKSsli~~l~~ 32 (186)
T 2bme_A 19 AGTGKSCLLHQFIE 32 (186)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999986
No 428
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=56.74 E-value=4.5 Score=32.40 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 27 ~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 27 GGVGKSALTIQFFQ 40 (183)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 429
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=56.63 E-value=4.5 Score=34.17 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||+|...+.+
T Consensus 22 ~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 22 QSVGKTSLITRFMY 35 (216)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHh
Confidence 69999999999876
No 430
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=56.59 E-value=5.9 Score=39.20 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHchhcc
Q 040234 1 MGGLGKTTLARVVYDLISH 19 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~ 19 (377)
.+|+||||||+.++.....
T Consensus 68 p~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 68 EPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CTTSSHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHhccCCc
Confidence 3799999999999985543
No 431
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=56.50 E-value=4.4 Score=32.26 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 18 ~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 18 SGVGKSSLLLRFAD 31 (181)
T ss_dssp TTSCHHHHHHHHCS
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999986
No 432
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=56.37 E-value=4.8 Score=35.40 Aligned_cols=15 Identities=40% Similarity=0.767 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
.|+|||||.+.++..
T Consensus 11 nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 11 SGLGKSTLVNTLFKS 25 (270)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999973
No 433
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=56.36 E-value=4.7 Score=32.00 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||...+..
T Consensus 23 ~~~GKssli~~l~~ 36 (179)
T 2y8e_A 23 QSVGKTSLITRFMY 36 (179)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999985
No 434
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=56.36 E-value=4.9 Score=32.25 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 13 ~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 13 DGVGKSALTIQLIQ 26 (189)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999986
No 435
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=56.19 E-value=5.8 Score=38.21 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=19.2
Q ss_pred CCCCcHHHHHHHHHchhccccccceEEe
Q 040234 1 MGGLGKTTLARVVYDLISHEFDGSSFLA 28 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~f~~~~w~~ 28 (377)
..|+|||||++.++..++.. ...+++.
T Consensus 301 pNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp CTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 37999999999999855432 3445554
No 436
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=56.16 E-value=4.7 Score=32.27 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 14 ~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 14 GAVGKTCLLISYTT 27 (186)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999885
No 437
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=56.04 E-value=24 Score=28.67 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=8.8
Q ss_pred CCCeEEEEecch
Q 040234 103 PGSRIIITTRNE 114 (377)
Q Consensus 103 ~gs~IIvTTR~~ 114 (377)
.+..|+|||-..
T Consensus 121 ~~~~i~v~T~~~ 132 (206)
T 1vec_A 121 DTVHVVIATPGR 132 (206)
T ss_dssp SCCSEEEECHHH
T ss_pred CCCCEEEeCHHH
Confidence 356799999765
No 438
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=56.02 E-value=4.8 Score=32.15 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 17 ~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 17 GAVGKTCLLISYTS 30 (182)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999886
No 439
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=55.98 E-value=4.7 Score=32.89 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 37 ~~vGKSsli~~l~~ 50 (196)
T 2atv_A 37 AGVGKSALVVRFLT 50 (196)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999986
No 440
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=55.94 E-value=6.7 Score=35.90 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
+|+|||||+..++...
T Consensus 88 ~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 88 PGVGKSTAIEALGMHL 103 (355)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7999999999998754
No 441
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=55.87 E-value=5.1 Score=31.93 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 21 ~~~GKSsli~~l~~ 34 (181)
T 2efe_B 21 VGAGKSSLVLRFVK 34 (181)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 68999999999886
No 442
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=55.76 E-value=4.9 Score=37.30 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
..|+|||||.+.++.
T Consensus 37 psGsGKSTLLr~iaG 51 (381)
T 3rlf_A 37 PSGCGKSTLLRMIAG 51 (381)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHc
Confidence 379999999999997
No 443
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=55.72 E-value=4.8 Score=32.03 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 19 ~~~GKssli~~l~~ 32 (180)
T 2g6b_A 19 SGVGKTCLLVRFKD 32 (180)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 68999999999886
No 444
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=55.69 E-value=4.9 Score=37.02 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=27.5
Q ss_pred HHHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
.+-+.|..++=+|+||.--. . ..+..++..+.. ..|..||++|.+...+.
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~ 198 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK-ELGITTVYVTHDQAEAL 198 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHH
Confidence 34556677788999999532 1 122222222110 12567888888865443
No 445
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=55.65 E-value=4.9 Score=37.02 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.|..++=+|+||.--. . ..+..++..+.. ..|..||++|.+...+..
T Consensus 144 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~~~~ 199 (359)
T 2yyz_A 144 LARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ-ELGITSVYVTHDQAEAMT 199 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEEESCHHHHHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHH
Confidence 4556677778999999643 1 122222211110 125678888888655433
No 446
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=55.65 E-value=44 Score=28.24 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=19.0
Q ss_pred eEEEEEeCCCChhhhhHhhCCCCCCCCCCeEEEEecchh
Q 040234 77 KVLVVIDDAAHPDHLRRLVGEPDWFGPGSRIIITTRNEH 115 (377)
Q Consensus 77 ~~LLVLDdv~~~~~~~~l~~~l~~~~~gs~IIvTTR~~~ 115 (377)
+...+..+.....+...+ ..+..|+|+|...-
T Consensus 130 ~~~~~~g~~~~~~~~~~~-------~~~~~Ivv~Tp~~l 161 (253)
T 1wrb_A 130 RSCVVYGGADTHSQIREV-------QMGCHLLVATPGRL 161 (253)
T ss_dssp CEEEECSSSCSHHHHHHH-------SSCCSEEEECHHHH
T ss_pred eEEEEECCCCHHHHHHHh-------CCCCCEEEECHHHH
Confidence 444555555555555554 23567999998653
No 447
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=55.53 E-value=4.8 Score=33.35 Aligned_cols=14 Identities=29% Similarity=0.157 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 16 ~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 16 CDSGKTLLFVRLLT 29 (214)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999999986
No 448
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=55.41 E-value=71 Score=28.81 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||...+..
T Consensus 43 ~~sGKSSLln~l~g 56 (360)
T 3t34_A 43 QSSGKSSVLESIVG 56 (360)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCcHHHHHHHHhC
Confidence 58999999999987
No 449
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=55.25 E-value=5.1 Score=37.10 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=27.7
Q ss_pred HHHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
.+-+.|..++=+|+||.--. . ..+..++..+.. ..|..||++|.+...+.
T Consensus 151 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~ 206 (372)
T 1v43_A 151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ-KLKVTTIYVTHDQVEAM 206 (372)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHH
Confidence 35556677778999999643 1 122222221110 12567888888865543
No 450
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=55.24 E-value=4.9 Score=33.25 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 35 ~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 35 AGVGKTCLVRRFTQ 48 (201)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 451
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=55.17 E-value=5.4 Score=32.17 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
.|+|||||+..++.-
T Consensus 35 NGsGKStll~ai~~~ 49 (182)
T 3kta_A 35 NGSGKSNIGDAILFV 49 (182)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998763
No 452
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=55.02 E-value=9.6 Score=38.01 Aligned_cols=40 Identities=20% Similarity=0.133 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHHHc-hhccccccceEEecchhhcccccCHHHHHHHH
Q 040234 1 MGGLGKTTLARVVYD-LISHEFDGSSFLADVREKCDKEGSVISLQKQL 47 (377)
Q Consensus 1 mgGiGKTtLA~~v~~-~~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~i 47 (377)
++|.|||+.+.++.. -++. ...+.+++-+.. .+..++..+
T Consensus 213 PPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~-----AvD~i~erL 253 (646)
T 4b3f_X 213 PPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNI-----AVDNLVERL 253 (646)
T ss_dssp CTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHH-----HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchH-----HHHHHHHHH
Confidence 589999986655554 3333 235666644333 455555554
No 453
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=54.99 E-value=5 Score=37.11 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=27.5
Q ss_pred HHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.|..++=+|+||.--. . ..+..++..+.. ..|..||++|.+...+..
T Consensus 150 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~ 205 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR-QLGVTTIYVTHDQVEAMT 205 (372)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHH
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEECCCHHHHHH
Confidence 4455667778999999643 1 122222222110 125678888888655443
No 454
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=54.86 E-value=4.9 Score=32.35 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 27 ~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 27 DNAGKTTILKKFNG 40 (186)
T ss_dssp TTSSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999986
No 455
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=54.82 E-value=5 Score=35.85 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||.+.++.
T Consensus 27 nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 27 SGLGKSTLINSLFL 40 (301)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999999875
No 456
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=54.79 E-value=5.1 Score=32.51 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||...+..
T Consensus 34 ~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 34 SGVGKTNLLSRFTR 47 (193)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999887
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=54.78 E-value=5.3 Score=31.93 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 15 ~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 15 RSVGKSSLTIQFVE 28 (181)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999985
No 458
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=54.75 E-value=5.1 Score=35.97 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+|||||++.+..-+
T Consensus 134 psGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhhhc
Confidence 36999999999998744
No 459
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=54.62 E-value=5.3 Score=33.14 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 37 ~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 37 SQCGKTALLHVFAK 50 (205)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 460
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=54.50 E-value=5.3 Score=32.65 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHch
Q 040234 2 GGLGKTTLARVVYDL 16 (377)
Q Consensus 2 gGiGKTtLA~~v~~~ 16 (377)
+|+|||+|.+.+.++
T Consensus 29 ~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 29 RRSGKSSIQKVVFHK 43 (196)
T ss_dssp TTSSHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhc
Confidence 699999999877763
No 461
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=54.49 E-value=4.3 Score=33.32 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=12.4
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 32 ~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 32 SGVGKSTLAGTFGG 45 (195)
T ss_dssp TTSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999864
No 462
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=54.49 E-value=5.4 Score=32.03 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||...+..
T Consensus 30 ~~~GKSsli~~l~~ 43 (181)
T 2h17_A 30 DNAGKTTILYQFSM 43 (181)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999986
No 463
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=54.48 E-value=5.3 Score=33.56 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 46 ~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 46 QGVGKSTLANIFAG 59 (211)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999874
No 464
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=54.42 E-value=5.2 Score=32.84 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 33 ~~~GKSsli~~l~~ 46 (201)
T 3oes_A 33 RCVGKTSLAHQFVE 46 (201)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHh
Confidence 69999999999987
No 465
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=54.41 E-value=5.4 Score=32.67 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 17 ~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 17 SSVGKTSFLFRYAD 30 (203)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999987
No 466
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=54.25 E-value=4.4 Score=36.49 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHch
Q 040234 1 MGGLGKTTLARVVYDL 16 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~ 16 (377)
+.|+|||||.+.+...
T Consensus 12 ~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 12 FLGAGKTTLLRHILNE 27 (318)
T ss_dssp SSSSSCHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhh
Confidence 3699999999999964
No 467
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=53.81 E-value=5.4 Score=32.64 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 23 ~~~GKSsli~~l~~ 36 (206)
T 2bov_A 23 GGVGKSALTLQFMY 36 (206)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 468
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=53.63 E-value=5.7 Score=32.24 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 32 ~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 32 SSVGKTSFLFRYAD 45 (191)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHhc
Confidence 69999999999987
No 469
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=53.57 E-value=5.5 Score=32.33 Aligned_cols=14 Identities=36% Similarity=0.480 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 30 ~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 30 TGVGKSCLLLQFTD 43 (191)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999886
No 470
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=53.56 E-value=5.7 Score=32.16 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 16 ~~~GKSsli~~l~~ 29 (208)
T 3clv_A 16 SSVGKSSIVLRLTK 29 (208)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 68999999999987
No 471
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=53.56 E-value=4.4 Score=37.01 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.3
Q ss_pred CCCcHHHHH-HHHHchhccc
Q 040234 2 GGLGKTTLA-RVVYDLISHE 20 (377)
Q Consensus 2 gGiGKTtLA-~~v~~~~~~~ 20 (377)
-|+||||++ +.+.+.+..+
T Consensus 21 ~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 21 YGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp SSSCTTHHHHHHHHTTTTSG
T ss_pred CCCCHHHHHHHHHHHHHhhC
Confidence 499999999 9998865544
No 472
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=53.55 E-value=5.5 Score=32.39 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 32 ~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 32 GAVGKTCLLLAFSK 45 (194)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 473
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=53.34 E-value=5.8 Score=32.49 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 17 ~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 17 SGVGKTSLMNQYVN 30 (207)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999886
No 474
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=53.27 E-value=4.4 Score=37.15 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=27.7
Q ss_pred HHHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLK 118 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~ 118 (377)
.+-+.|..++=+|+||.--. . ..+..++..+.. ..|..||++|.+...+.
T Consensus 137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~-~~g~tii~vTHd~~~~~ 192 (348)
T 3d31_A 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK-KNKLTVLHITHDQTEAR 192 (348)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH-HTTCEEEEEESCHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH
Confidence 34556667788999999643 1 122222222110 12567888888865443
No 475
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=53.27 E-value=5.8 Score=32.00 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 25 ~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 25 DNAGKTTILYQFSM 38 (187)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999985
No 476
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=53.21 E-value=5.6 Score=32.21 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 31 ~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 31 QYSGKTTFVNVIAS 44 (188)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 68999999999986
No 477
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=53.17 E-value=6.4 Score=35.49 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHHchhccc
Q 040234 1 MGGLGKTTLARVVYDLISHE 20 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~~~ 20 (377)
.||.|||-++..+++.++++
T Consensus 46 vGGTGKTP~vi~L~~~L~~~ 65 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLKDK 65 (315)
T ss_dssp SSCCSHHHHHHHHHHHTTTS
T ss_pred eCCCChHHHHHHHHHHHhhc
Confidence 59999999999999976654
No 478
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=53.06 E-value=5.6 Score=32.14 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 31 ~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 31 SSVGKTSFLFRYAD 44 (189)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 68999999999986
No 479
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=52.87 E-value=6.1 Score=32.28 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 29 ~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 29 GAVGKTSLVVSYTT 42 (201)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999986
No 480
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=52.67 E-value=5.8 Score=32.23 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 17 ~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 17 GGVGKSSLVLRFVK 30 (199)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHc
Confidence 69999999999986
No 481
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=52.63 E-value=25 Score=29.03 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=10.5
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|.|||..+....-
T Consensus 60 TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 60 SGMGKTAVFVLATL 73 (220)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCchhhhhhHHHH
Confidence 59999987765554
No 482
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=52.62 E-value=5.9 Score=32.50 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 34 ~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 34 AGTGKSCLLHQFIE 47 (200)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999886
No 483
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=52.61 E-value=6.1 Score=32.10 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||...+..
T Consensus 32 ~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 32 TGVGKSSIVCRFVQ 45 (192)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999986
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=52.58 E-value=6 Score=36.51 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=30.0
Q ss_pred HHHHHhcCceEEEEEeCCCC---h---hhhhHhhCCCCCCCCCCeEEEEecchhHHhh
Q 040234 68 MLRVRLRRKKVLVVIDDAAH---P---DHLRRLVGEPDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 68 ~l~~~l~~k~~LLVLDdv~~---~---~~~~~l~~~l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
.+-+.|..++=+|++|..-. . ..+..++..+.. ..|..||++|.+-..+..
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~-~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINR-RLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HSCCEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHH
Confidence 34556777888999999754 2 122222222210 236778888888766544
No 485
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=52.39 E-value=6.1 Score=31.99 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||...+..
T Consensus 25 ~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 25 SGVGKSCLLLRFAD 38 (196)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999987
No 486
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=52.37 E-value=6 Score=32.93 Aligned_cols=14 Identities=57% Similarity=0.776 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 43 ~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 43 GGCGKTSLLMVFAD 56 (214)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999986
No 487
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=52.36 E-value=5.9 Score=36.92 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHc
Q 040234 1 MGGLGKTTLARVVYD 15 (377)
Q Consensus 1 mgGiGKTtLA~~v~~ 15 (377)
..|+|||||.+.++.
T Consensus 55 psGsGKSTLLr~iaG 69 (390)
T 3gd7_A 55 RTGSGKSTLLSAFLR 69 (390)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCChHHHHHHHHhC
Confidence 369999999999986
No 488
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=52.36 E-value=5.6 Score=32.31 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 26 ~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 26 DNSGKTTIINQVKP 39 (199)
T ss_dssp TTSCHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 489
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=52.36 E-value=6.2 Score=31.88 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 29 ~~~GKSsli~~l~~ 42 (189)
T 1z06_A 29 SNVGKTCLTYRFCA 42 (189)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999886
No 490
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=52.16 E-value=39 Score=31.74 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHchh
Q 040234 2 GGLGKTTLARVVYDLI 17 (377)
Q Consensus 2 gGiGKTtLA~~v~~~~ 17 (377)
-|.|||..+..+....
T Consensus 117 TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 117 TGSGKTHVAMAAINEL 132 (472)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5999999998887754
No 491
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=52.11 E-value=5.8 Score=38.76 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHchhc
Q 040234 1 MGGLGKTTLARVVYDLIS 18 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~~ 18 (377)
++|+||||+|+.+.+++.
T Consensus 380 ~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 380 LPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 479999999999998654
No 492
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=52.09 E-value=5.7 Score=35.34 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=28.5
Q ss_pred HHHHhcCceEEEEEeCCCC---hhhhhHhhCC-CCCCCCCCeEEEEecchhHHhh
Q 040234 69 LRVRLRRKKVLVVIDDAAH---PDHLRRLVGE-PDWFGPGSRIIITTRNEHLLKL 119 (377)
Q Consensus 69 l~~~l~~k~~LLVLDdv~~---~~~~~~l~~~-l~~~~~gs~IIvTTR~~~v~~~ 119 (377)
+-+.+..++=+|+||..-. ...-..+... +.....+..||++|.+...+..
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 4455566777999999754 2222222221 1111236678888888765543
No 493
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=51.90 E-value=5.4 Score=32.57 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 38 ~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 38 DAAGKTTILYKLKL 51 (192)
T ss_dssp TTSSHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999975
No 494
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=51.82 E-value=4.5 Score=32.38 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 27 ~~~GKssli~~l~~ 40 (183)
T 1moz_A 27 DGAGKTTILYRLQI 40 (183)
T ss_dssp TTSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999885
No 495
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=51.67 E-value=6.3 Score=31.80 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 24 ~~~GKssli~~l~~ 37 (195)
T 1x3s_A 24 SGVGKSSLLLRFTD 37 (195)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 68999999999986
No 496
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=51.63 E-value=5.5 Score=32.44 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
.|+|||||...+..
T Consensus 35 ~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 35 RGVGKTSLMERFTD 48 (192)
T ss_dssp TTSSHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhc
Confidence 68999999999986
No 497
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=51.61 E-value=6.1 Score=32.32 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 37 ~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 37 AAVGKSSFLMRLCK 50 (199)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 68999999999986
No 498
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=51.52 E-value=6.3 Score=35.20 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHHchh
Q 040234 1 MGGLGKTTLARVVYDLI 17 (377)
Q Consensus 1 mgGiGKTtLA~~v~~~~ 17 (377)
..|+|||||.+.+. ..
T Consensus 173 ~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 173 PSGVGKSSILSRLT-GE 188 (302)
T ss_dssp STTSSHHHHHHHHH-SC
T ss_pred CCCCCHHHHHHHHH-Hh
Confidence 37999999999998 44
No 499
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=51.50 E-value=6.1 Score=32.44 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 17 ~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 17 SGVGKSCLLLRFSD 30 (206)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999986
No 500
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=51.32 E-value=6.2 Score=32.56 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHc
Q 040234 2 GGLGKTTLARVVYD 15 (377)
Q Consensus 2 gGiGKTtLA~~v~~ 15 (377)
+|+|||||...+..
T Consensus 34 ~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 34 GACGKTCLLIVFSK 47 (207)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999886
Done!