BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040237
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175
IPP IA L++L YL ++ + +G IP + ++ LV+LD S N SG L +SL NL
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNL 151
Query: 176 V 176
V
Sbjct: 152 V 152
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
IP ++ + L L+ S + +G +P I L NLV + GN SG
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF-LELGK 169
EIP ++N + L++++LS++ TG+IP I L NL L LS N +SG ELG
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
NL ND IP E+ +L L+ L+LS + G+IP + L+ L +DLS N SG
Sbjct: 659 NLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 165 LELGK 169
E+G+
Sbjct: 718 PEMGQ 722
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG 162
EIP I L L+ L LS++ F+G IP+E+ + +L+ LDL+ N ++G
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 75 KVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIAN-LSRLSYLNLSD 133
KV E + ++P +L + S+L+ +L+ N+F P +P N + L L L +
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 134 SFFTGQIPSEILELSNLVSLDLSGNGYSGG----------------FLELGKTSLTNLVQ 177
+ FTG+IP + S LVSL LS N SG +L + + + +
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 178 KLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQG 219
+ LETL +L FN IP L N ++L ++SL N + G
Sbjct: 461 YVKTLETL----ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 78 SWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFT 137
S + + ++P L+ A L+ L +L+GN F Y +PP + S L L LS + F+
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGL--DLSGNHF-YGAVPPFFGSCSLLESLALSSNNFS 328
Query: 138 GQIPSE-ILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLE 183
G++P + +L++ L LDLS N +SG E SLTNL L L+
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPE----SLTNLSASLLTLD 371
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG 162
IP EI ++ L LNL + +G IP E+ +L L LDLS N G
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL-ELSNLVSLDLSGNGYSG 162
N++ N F P IPP L L YL+L+++ FTG+IP + L LDLSGN + G
Sbjct: 250 NISSNQFVGP-IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 119 EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178
+++ L +L++S + F+ IP + + S L LD+SGN SG F + +
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF--------SRAIST 242
Query: 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
T L+ LN+ F PIP L SL++LSL
Sbjct: 243 CTELKLLNISSNQ-FVGPIPP--LPLKSLQYLSL 273
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 96 FSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152
+IL + + + +GN IP E+ + L +L+L+ + F G IP+ + + S ++
Sbjct: 513 LAILKLSNNSFSGN------IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 563
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF-LELGK 169
EIP ++N + L++++LS++ TG+IP I L NL L LS N +SG ELG
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164
NL ND IP E+ +L L+ L+LS + G+IP + L+ L +DLS N SG
Sbjct: 662 NLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 165 LELGK 169
E+G+
Sbjct: 721 PEMGQ 725
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG 162
EIP I L L+ L LS++ F+G IP+E+ + +L+ LDL+ N ++G
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 75 KVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIAN-LSRLSYLNLSD 133
KV E + ++P +L + S+L+ +L+ N+F P +P N + L L L +
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 134 SFFTGQIPSEILELSNLVSLDLSGNGYSGG----------------FLELGKTSLTNLVQ 177
+ FTG+IP + S LVSL LS N SG +L + + + +
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 178 KLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQG 219
+ LETL +L FN IP L N ++L ++SL N + G
Sbjct: 464 YVKTLETL----ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 78 SWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFT 137
S + + ++P L+ A L+ L +L+GN F Y +PP + S L L LS + F+
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGL--DLSGNHF-YGAVPPFFGSCSLLESLALSSNNFS 331
Query: 138 GQIPSE-ILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLE 183
G++P + +L++ L LDLS N +SG E SLTNL L L+
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPE----SLTNLSASLLTLD 374
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL-ELSNLVSLDLSGNGYSG 162
N++ N F P IPP L L YL+L+++ FTG+IP + L LDLSGN + G
Sbjct: 253 NISSNQFVGP-IPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG 162
IP EI ++ L LNL + +G IP E+ +L L LDLS N G
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 119 EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178
+++ L +L++S + F+ IP + + S L LD+SGN SG F + +
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF--------SRAIST 245
Query: 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
T L+ LN+ F PIP L SL++LSL
Sbjct: 246 CTELKLLNISSNQ-FVGPIPP--LPLKSLQYLSL 276
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 96 FSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152
+IL + + + +GN IP E+ + L +L+L+ + F G IP+ + + S ++
Sbjct: 516 LAILKLSNNSFSGN------IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 122 NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTN 181
+L L +L+LSD+ + S LS+L L+L GN Y LG TSL LTN
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT----LGVTSL---FPNLTN 150
Query: 182 LETLNLGRVLIFNTPIPHNLGNLSSL-----RFLSLQN 214
L+TL +G V F+ + L+SL + LSL+N
Sbjct: 151 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 188
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 28/131 (21%)
Query: 86 SKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL 145
SK L A + ++ N++ N F+Y L+RL YLN + ++P+EI
Sbjct: 219 SKYDDQLWHALDLSNLQIFNISANIFKY-------DFLTRL-YLNGNS---LTELPAEIK 267
Query: 146 ELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN---TPIPHNLG 202
LSNL LDLS N + ELG L F+ T +P G
Sbjct: 268 NLSNLRVLDLSHNRLTSLPAELG--------------SCFQLKYFYFFDNMVTTLPWEFG 313
Query: 203 NLSSLRFLSLQ 213
NL +L+FL ++
Sbjct: 314 NLCNLQFLGVE 324
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 122 NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTN 181
+L L +L+LSD+ + S LS+L L+L GN Y LG TSL LTN
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT----LGVTSL---FPNLTN 124
Query: 182 LETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQ 213
L+TL +G V F+ + L+SL L ++
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 74 PKVASWKQGEAAS--KVPSTLAAAFSILSIL---SGNLAGNDFRYPEIPPEIANLS 124
P W+ G AAS +PS+ AA ++ +L +G L G FR P + + +L+
Sbjct: 192 PSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLT 247
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 74 PKVASWKQGEAAS--KVPSTLAAAFSILSIL---SGNLAGNDFRYPEIPPEIANLS 124
P W+ G AAS +PS+ AA ++ +L +G L G FR P + + +L+
Sbjct: 193 PSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLT 248
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 112 RYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS 171
+ +I P +AN +RL+ L + ++ T P L+NL L +LE+G
Sbjct: 210 QITDITP-VANXTRLNSLKIGNNKITDLSP-----LANLSQL---------TWLEIGTNQ 254
Query: 172 LT--NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSL 207
++ N V+ LT L+ LN+G I + + +NL L+SL
Sbjct: 255 ISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSL 292
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 30/126 (23%)
Query: 111 FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170
F +PE+ ++ +LSR + D + LS+L +L L+GN L LG
Sbjct: 51 FSFPEL--QVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS--LALGAF 98
Query: 171 SLTNLVQKLTNLET------------------LNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
S + +QKL LET LN+ LI + +P NL++L L L
Sbjct: 99 SGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 213 QNCLVQ 218
+ +Q
Sbjct: 159 SSNKIQ 164
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG------------ 162
+P +++ + + LN+S ++ + S+IL LS L L +S N
Sbjct: 14 HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQEL 71
Query: 163 GFLELGKTSLTNL-VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
+L+L L + NL+ L+L PI GN+S L+FL L
Sbjct: 72 EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 105 NLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFT--GQIPSEILELSNLVSLDLSGNGYSG 162
+L+ NDF + E NL++L++L LS + F +P L LS ++ LDL G
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCIL-LDLVSYHIKG 185
Query: 163 G---FLELGKTSLTNLV 176
G L++ T++ +LV
Sbjct: 186 GETESLQIPNTTVLHLV 202
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 81 QGEAASKVPST-----LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSF 135
QG A + P + LA FS + +L+ + + ++ S+L L+L
Sbjct: 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129
Query: 136 FTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIF 193
+ I + + + SNLV L+LSG GF E +L L+ + L+ LNL F
Sbjct: 130 LSDPIVNTLAKNSNLVRLNLSG---CSGFSEF---ALQTLLSSCSRLDELNLSWCFDF 181
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 106 LAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGY 160
+AGN F+ +P L L++L+LS P+ LS+L L++S N +
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 30/126 (23%)
Query: 111 FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170
F +PE+ ++ +LSR + D + LS+L +L L+GN L LG
Sbjct: 50 FSFPEL--QVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS--LALGAF 97
Query: 171 SLTNLVQKLTNLET------------------LNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
S + +QKL +ET LN+ LI + +P NL++L L L
Sbjct: 98 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 213 QNCLVQ 218
+ +Q
Sbjct: 158 SSNKIQ 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 30/126 (23%)
Query: 111 FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170
F +PE+ ++ +LSR + D + LS+L +L L+GN L LG
Sbjct: 51 FSFPEL--QVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS--LALGAF 98
Query: 171 SLTNLVQKLTNLET------------------LNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
S + +QKL +ET LN+ LI + +P NL++L L L
Sbjct: 99 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 213 QNCLVQ 218
+ +Q
Sbjct: 159 SSNKIQ 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 30/127 (23%)
Query: 111 FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170
F +PE+ ++ +LSR + D + LS+L +L L+GN L LG
Sbjct: 49 FSFPEL--QVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS--LALGAF 96
Query: 171 SLTNLVQKLTNLET------------------LNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
S + +QKL +ET LN+ LI + +P NL++L L L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 213 QNCLVQG 219
+ +Q
Sbjct: 157 SSNKIQS 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 30/126 (23%)
Query: 111 FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170
F +PE+ ++ +LSR + D + LS+L +L L+GN L LG
Sbjct: 50 FSFPEL--QVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS--LALGAF 97
Query: 171 SLTNLVQKLTNLET------------------LNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
S + +QKL +ET LN+ LI + +P NL++L L L
Sbjct: 98 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 213 QNCLVQ 218
+ +Q
Sbjct: 158 SSNKIQ 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 106 LAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGY 160
+AGN F+ +P L L++L+LS P+ LS+L L++S N +
Sbjct: 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 106 LAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGY 160
+AGN F+ +P L L++L+LS P+ LS+L L++S N +
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor
Length = 966
Score = 27.7 bits (60), Expect = 5.5, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 136 FTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNL 187
FT Q+ +++E+ V+LD+ S ++ ++ L QKL NL+ LNL
Sbjct: 590 FTQQV--QVIEMLQKVTLDI--KSLSAEKYDVSSQVISQLKQKLENLQNLNL 637
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 3/147 (2%)
Query: 51 EGLIINVPIEESHHNYPWSYECRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGND 110
EG I P++ H+ ++ + + E+ S+ S + A + +G G
Sbjct: 319 EGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFY 378
Query: 111 FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170
F EI PEI R + N + F G + L ++ + G G+ + KT
Sbjct: 379 FDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGL--GYRVMSKT 436
Query: 171 SLTNLVQKLTNLETLNLGRVLIFNTPI 197
+ N E L + +F+ P+
Sbjct: 437 KILATGGASHNREILQV-LADVFDAPV 462
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 30/126 (23%)
Query: 111 FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170
F +PE+ ++ +LSR + D + LS+L +L L+GN L LG
Sbjct: 49 FSFPEL--QVLDLSRCEIQTIEDGAYQS--------LSHLSTLILTGNPIQS--LALGAF 96
Query: 171 SLTNLVQKLTNLET------------------LNLGRVLIFNTPIPHNLGNLSSLRFLSL 212
S + +QKL +ET LN+ LI + +P NL++L L L
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 213 QNCLVQ 218
+ +Q
Sbjct: 157 SSNKIQ 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,702,496
Number of Sequences: 62578
Number of extensions: 223283
Number of successful extensions: 602
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 93
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)