Query 040237
Match_columns 219
No_of_seqs 237 out of 3277
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 2.5E-19 5.5E-24 170.4 16.2 168 39-218 27-225 (968)
2 PLN03150 hypothetical protein; 99.7 3.7E-17 8E-22 148.6 14.0 158 36-216 367-526 (623)
3 PLN00113 leucine-rich repeat r 99.6 5.8E-15 1.3E-19 140.7 10.2 118 90-217 154-272 (968)
4 KOG0617 Ras suppressor protein 99.4 6.9E-15 1.5E-19 110.9 -2.8 123 91-218 47-186 (264)
5 KOG0617 Ras suppressor protein 99.3 2.2E-14 4.8E-19 108.2 -4.1 113 92-216 26-161 (264)
6 KOG0472 Leucine-rich repeat pr 99.3 1.1E-12 2.4E-17 110.2 2.4 110 95-218 431-541 (565)
7 PF14580 LRR_9: Leucine-rich r 99.2 2.5E-11 5.4E-16 93.2 6.4 110 95-218 15-126 (175)
8 PLN03150 hypothetical protein; 99.2 4E-11 8.6E-16 109.4 8.2 86 125-219 419-504 (623)
9 KOG0472 Leucine-rich repeat pr 99.2 2.3E-12 5E-17 108.4 -1.1 119 83-217 189-309 (565)
10 KOG0618 Serine/threonine phosp 99.1 2.6E-11 5.6E-16 110.8 1.3 117 86-216 369-487 (1081)
11 KOG0444 Cytoskeletal regulator 99.0 6.8E-11 1.5E-15 104.7 0.9 111 95-217 74-185 (1255)
12 KOG0444 Cytoskeletal regulator 99.0 3.5E-11 7.5E-16 106.5 -1.8 117 95-217 218-351 (1255)
13 KOG4194 Membrane glycoprotein 99.0 5.3E-11 1.1E-15 104.4 -1.1 121 95-217 265-404 (873)
14 PF14580 LRR_9: Leucine-rich r 98.9 2.4E-09 5.2E-14 82.2 6.1 105 95-212 37-147 (175)
15 PRK15370 E3 ubiquitin-protein 98.9 3.5E-08 7.6E-13 91.5 13.2 98 99-218 199-296 (754)
16 KOG0618 Serine/threonine phosp 98.8 2.8E-10 6E-15 104.2 -1.7 108 97-218 357-465 (1081)
17 cd00116 LRR_RI Leucine-rich re 98.8 2.3E-09 4.9E-14 89.6 3.1 114 101-218 110-234 (319)
18 cd00116 LRR_RI Leucine-rich re 98.8 4.3E-09 9.2E-14 87.9 3.8 119 95-218 132-263 (319)
19 KOG4194 Membrane glycoprotein 98.8 5.5E-09 1.2E-13 92.0 3.6 119 95-217 98-233 (873)
20 PF13855 LRR_8: Leucine rich r 98.7 5.1E-09 1.1E-13 66.4 2.5 59 149-217 2-61 (61)
21 PRK15387 E3 ubiquitin-protein 98.7 1.4E-08 3E-13 94.0 6.3 37 181-219 423-459 (788)
22 PLN03210 Resistant to P. syrin 98.7 8.8E-08 1.9E-12 93.3 9.9 107 97-216 609-715 (1153)
23 PF13855 LRR_8: Leucine rich r 98.7 9E-09 1.9E-13 65.2 1.9 58 100-159 2-60 (61)
24 KOG1259 Nischarin, modulator o 98.7 4.4E-09 9.5E-14 86.1 -0.1 117 99-219 284-413 (490)
25 PRK15370 E3 ubiquitin-protein 98.6 5.1E-08 1.1E-12 90.4 6.3 100 99-218 262-380 (754)
26 PLN03210 Resistant to P. syrin 98.6 2.8E-07 6.1E-12 89.8 10.0 115 98-215 777-903 (1153)
27 KOG0532 Leucine-rich repeat (L 98.6 6.9E-09 1.5E-13 91.0 -1.6 103 101-218 145-247 (722)
28 KOG1259 Nischarin, modulator o 98.6 1.8E-08 4E-13 82.5 0.9 68 116-194 276-343 (490)
29 PRK15387 E3 ubiquitin-protein 98.5 5.3E-07 1.1E-11 83.7 10.3 112 91-219 215-356 (788)
30 KOG0532 Leucine-rich repeat (L 98.5 1.6E-08 3.4E-13 88.8 0.1 114 89-218 110-224 (722)
31 COG4886 Leucine-rich repeat (L 98.4 1.7E-07 3.6E-12 81.1 3.2 107 95-215 112-219 (394)
32 COG4886 Leucine-rich repeat (L 98.3 2.7E-07 5.8E-12 79.8 3.0 70 89-161 128-199 (394)
33 KOG4658 Apoptotic ATPase [Sign 98.3 5.6E-07 1.2E-11 84.9 4.9 106 98-214 544-651 (889)
34 KOG1859 Leucine-rich repeat pr 98.3 2.4E-08 5.3E-13 89.9 -4.7 108 95-217 183-291 (1096)
35 KOG4579 Leucine-rich repeat (L 98.3 1.3E-07 2.8E-12 69.2 -0.6 92 95-200 49-141 (177)
36 KOG4237 Extracellular matrix p 98.3 1.3E-07 2.9E-12 79.8 -0.8 112 100-216 68-199 (498)
37 KOG4579 Leucine-rich repeat (L 98.2 1.4E-07 3E-12 69.1 -1.0 104 100-217 28-135 (177)
38 PF12799 LRR_4: Leucine Rich r 98.2 1.5E-06 3.2E-11 51.2 3.6 37 149-194 2-38 (44)
39 KOG4237 Extracellular matrix p 98.2 1.4E-07 3E-12 79.7 -2.7 105 86-192 76-200 (498)
40 KOG1859 Leucine-rich repeat pr 98.2 8.3E-08 1.8E-12 86.6 -4.3 104 100-219 165-268 (1096)
41 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.7E-11 49.6 3.3 35 125-160 2-36 (44)
42 KOG4658 Apoptotic ATPase [Sign 98.1 2.7E-06 5.9E-11 80.3 3.8 108 95-212 567-675 (889)
43 KOG3207 Beta-tubulin folding c 98.1 1.1E-06 2.3E-11 75.3 0.5 114 96-217 169-313 (505)
44 KOG0531 Protein phosphatase 1, 98.0 2.3E-06 5E-11 74.7 0.9 107 95-217 91-198 (414)
45 KOG0531 Protein phosphatase 1, 97.9 2.2E-06 4.8E-11 74.8 0.4 106 97-218 70-175 (414)
46 KOG3207 Beta-tubulin folding c 97.9 1.9E-06 4.2E-11 73.7 -0.3 89 95-190 142-232 (505)
47 KOG3665 ZYG-1-like serine/thre 97.8 2.2E-05 4.7E-10 72.6 5.1 113 97-218 146-263 (699)
48 PF08263 LRRNT_2: Leucine rich 97.8 2.2E-05 4.8E-10 45.9 3.0 41 40-85 2-42 (43)
49 KOG2739 Leucine-rich acidic nu 97.7 2.9E-05 6.4E-10 62.4 3.0 118 84-211 27-149 (260)
50 KOG1644 U2-associated snRNP A' 97.6 0.00013 2.7E-09 56.9 5.2 106 98-214 41-149 (233)
51 KOG1909 Ran GTPase-activating 97.4 0.00012 2.7E-09 61.2 3.6 122 95-217 88-253 (382)
52 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.5E-09 59.1 2.3 95 116-218 35-129 (260)
53 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.8E-09 67.5 2.7 110 98-217 121-232 (699)
54 KOG1909 Ran GTPase-activating 97.2 0.00024 5.3E-09 59.5 2.4 120 95-218 153-283 (382)
55 KOG1644 U2-associated snRNP A' 97.1 0.00088 1.9E-08 52.3 5.1 103 101-218 21-126 (233)
56 KOG2120 SCF ubiquitin ligase, 96.8 9.4E-05 2E-09 61.0 -2.7 119 96-216 207-349 (419)
57 KOG2982 Uncharacterized conser 96.7 0.00062 1.3E-08 56.3 1.4 87 97-190 69-156 (418)
58 PRK15386 type III secretion pr 96.7 0.0069 1.5E-07 52.6 7.6 31 181-215 157-187 (426)
59 KOG2123 Uncharacterized conser 96.5 0.00024 5.2E-09 58.1 -2.5 84 99-194 19-102 (388)
60 COG5238 RNA1 Ran GTPase-activa 96.5 0.0085 1.8E-07 49.1 6.1 66 95-161 88-170 (388)
61 KOG2982 Uncharacterized conser 96.4 0.00087 1.9E-08 55.4 0.4 86 122-215 69-156 (418)
62 KOG2120 SCF ubiquitin ligase, 96.2 0.0011 2.3E-08 55.0 -0.3 111 95-215 256-373 (419)
63 PF00560 LRR_1: Leucine Rich R 95.7 0.0024 5.2E-08 31.5 -0.1 17 126-143 2-18 (22)
64 COG5238 RNA1 Ran GTPase-activa 95.2 0.027 5.9E-07 46.3 4.0 125 89-217 20-169 (388)
65 PF00560 LRR_1: Leucine Rich R 95.2 0.007 1.5E-07 29.8 0.5 19 182-202 2-20 (22)
66 KOG2123 Uncharacterized conser 95.2 0.0014 3E-08 53.8 -3.3 84 123-218 18-101 (388)
67 PRK15386 type III secretion pr 94.4 0.052 1.1E-06 47.3 4.2 73 99-190 94-187 (426)
68 KOG0473 Leucine-rich repeat pr 94.4 0.00099 2.1E-08 53.3 -5.9 86 95-192 38-123 (326)
69 PF13504 LRR_7: Leucine rich r 93.4 0.047 1E-06 25.0 1.1 9 127-135 4-12 (17)
70 PF13306 LRR_5: Leucine rich r 93.3 0.18 3.9E-06 35.9 4.7 58 95-157 8-67 (129)
71 KOG0473 Leucine-rich repeat pr 91.5 0.0033 7.2E-08 50.4 -6.8 87 119-217 37-123 (326)
72 smart00369 LRR_TYP Leucine-ric 91.4 0.23 5E-06 25.1 2.3 14 124-137 2-15 (26)
73 smart00370 LRR Leucine-rich re 91.4 0.23 5E-06 25.1 2.3 14 124-137 2-15 (26)
74 KOG1947 Leucine rich repeat pr 89.6 0.28 6E-06 43.0 2.8 37 179-215 268-305 (482)
75 PF13306 LRR_5: Leucine rich r 88.4 1.1 2.4E-05 31.8 4.7 95 95-207 31-128 (129)
76 PF13516 LRR_6: Leucine Rich r 85.1 0.51 1.1E-05 23.3 1.0 14 205-218 2-15 (24)
77 smart00365 LRR_SD22 Leucine-ri 79.1 1.7 3.6E-05 22.3 1.6 12 206-217 3-14 (26)
78 KOG3864 Uncharacterized conser 78.4 0.36 7.9E-06 37.9 -1.4 82 99-189 101-185 (221)
79 smart00368 LRR_RI Leucine rich 76.9 1.9 4.2E-05 22.2 1.5 12 206-217 3-14 (28)
80 KOG1947 Leucine rich repeat pr 76.9 3.5 7.7E-05 36.0 4.1 110 95-211 210-327 (482)
81 smart00364 LRR_BAC Leucine-ric 75.4 2 4.3E-05 22.0 1.2 12 126-137 4-15 (26)
82 KOG4308 LRR-containing protein 74.3 0.076 1.6E-06 47.4 -7.0 120 95-218 168-303 (478)
83 KOG3763 mRNA export factor TAP 61.7 5.8 0.00013 35.9 2.1 64 122-194 216-284 (585)
84 KOG3864 Uncharacterized conser 56.2 2.2 4.7E-05 33.7 -1.3 63 95-157 121-185 (221)
85 KOG3763 mRNA export factor TAP 50.7 13 0.00028 33.7 2.5 65 96-162 215-284 (585)
86 KOG4308 LRR-containing protein 38.6 2 4.3E-05 38.5 -4.5 94 97-194 202-304 (478)
87 PF07172 GRP: Glycine rich pro 37.5 49 0.0011 22.7 3.2 13 7-19 6-18 (95)
88 smart00367 LRR_CC Leucine-rich 37.1 24 0.00053 17.4 1.3 12 205-216 2-13 (26)
89 PF05399 EVI2A: Ectropic viral 37.0 32 0.0007 27.2 2.5 24 1-24 128-151 (227)
90 PRK00442 tatA twin arginine tr 35.2 43 0.00092 22.8 2.5 46 1-56 1-46 (92)
91 KOG4341 F-box protein containi 33.4 22 0.00048 31.3 1.2 36 179-214 400-435 (483)
92 COG1826 TatA Sec-independent p 33.2 42 0.0009 22.9 2.3 45 1-55 1-45 (94)
93 KOG4341 F-box protein containi 23.6 41 0.00089 29.7 1.1 81 122-209 370-456 (483)
94 PRK02958 tatA twin arginine tr 23.4 97 0.0021 20.2 2.6 43 5-56 4-46 (73)
95 PF09680 Tiny_TM_bacill: Prote 23.0 96 0.0021 15.4 1.9 14 7-20 6-19 (24)
96 TIGR01732 tiny_TM_bacill conse 22.7 1.1E+02 0.0024 15.5 2.1 15 6-20 7-21 (26)
97 TIGR00864 PCC polycystin catio 22.6 70 0.0015 35.0 2.7 31 105-137 1-32 (2740)
98 TIGR00864 PCC polycystin catio 21.6 72 0.0016 34.9 2.6 31 130-161 1-32 (2740)
99 PRK04561 tatA twin arginine tr 20.5 1.2E+02 0.0027 19.8 2.6 42 6-56 5-46 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=2.5e-19 Score=170.35 Aligned_cols=168 Identities=33% Similarity=0.504 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCCC-------------Cccccccc-cccCCCCCEe
Q 040237 39 HDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAAS-------------KVPSTLAA-AFSILSILSG 104 (219)
Q Consensus 39 ~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c~-------------~l~g~lp~-l~~l~~L~~L 104 (219)
+++|+.||++||+++.++.. ....|.... .+|.|. |+.|. ++.|.+++ +..+++|++|
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~-----~~~~w~~~~--~~c~w~-gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK-----YLSNWNSSA--DVCLWQ-GITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc-----cCCCCCCCC--CCCcCc-ceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEE
Confidence 36899999999999965432 245675332 678998 77772 34566666 8888899999
Q ss_pred ecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc-C--------------
Q 040237 105 NLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL-G-------------- 168 (219)
Q Consensus 105 ~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~-~-------------- 168 (219)
++++|++.+. +|..+. .+++|++|++++|++++.+|. +.+++|++|++++|.+++.+|.. +
T Consensus 99 ~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 99 NLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred ECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 9999988875 777654 677777777777766655543 23445555555555543322100 0
Q ss_pred -CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 169 -KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 169 -~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+.+|..++++++|++|++++|.+.+ .+|..++++++|++|++++|+++
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccC
Confidence 22456666667777777777777666 66667777777777777777664
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.74 E-value=3.7e-17 Score=148.61 Aligned_cols=158 Identities=27% Similarity=0.386 Sum_probs=128.5
Q ss_pred CCCCHHHHHHHHHHHhcCccCCCCcccCCCCCCCcc-CCCCcccccCCCCCCCccccccccccCCCCCEeecCCCCCCCC
Q 040237 36 PICHDDERSALLQFKEGLIINVPIEESHHNYPWSYE-CRPKVASWKQGEAASKVPSTLAAAFSILSILSGNLAGNDFRYP 114 (219)
Q Consensus 36 ~~~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~-~~~~~~~W~~~~~c~~l~g~lp~l~~l~~L~~L~L~~n~l~~~ 114 (219)
..+.++|+.||+++|+.+..+.. .+|..+ |.+..+.|. |+.|..-.. .....++.|+|++|.+.+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~-------~~W~g~~C~p~~~~w~-Gv~C~~~~~-----~~~~~v~~L~L~~n~L~g~ 433 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR-------FGWNGDPCVPQQHPWS-GADCQFDST-----KGKWFIDGLGLDNQGLRGF 433 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc-------CCCCCCCCCCcccccc-cceeeccCC-----CCceEEEEEECCCCCcccc
Confidence 35678899999999999865421 257654 445556899 788842110 1112467899999999996
Q ss_pred CCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237 115 EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 115 ~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~ 194 (219)
+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|+++| .+|..++++++|++|++++|.+++
T Consensus 434 -ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--------~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 434 -IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--------SIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred -CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--------CCchHHhcCCCCCEEECcCCcccc
Confidence 99999999999999999999999999999999999999999999965 678889999999999999999999
Q ss_pred CCcChhhcCC-CCCCEeeccccc
Q 040237 195 TPIPHNLGNL-SSLRFLSLQNCL 216 (219)
Q Consensus 195 ~~~p~~l~~l-~~L~~L~ls~N~ 216 (219)
.+|..++.+ .++..+++.+|.
T Consensus 505 -~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 505 -RVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred -cCChHHhhccccCceEEecCCc
Confidence 899888764 467788888875
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.58 E-value=5.8e-15 Score=140.65 Aligned_cols=118 Identities=31% Similarity=0.435 Sum_probs=60.2
Q ss_pred ccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC
Q 040237 90 STLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG 168 (219)
Q Consensus 90 g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~ 168 (219)
+.+|. +..+++|++|++++|.+.+. +|..+.++++|++|++++|.+.+.+|..++++.+|+.|++++|.+++
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------ 226 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG------ 226 (968)
T ss_pred ccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC------
Confidence 34444 55555555555555555543 55555555555555555555555555555555555555555555543
Q ss_pred CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 169 KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 169 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
.+|..++++++|++|++++|.+++ .+|..++++++|++|++++|++
T Consensus 227 --~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 227 --EIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred --cCChhHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCee
Confidence 334444444444445444444444 4444444444444444444443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=6.9e-15 Score=110.86 Aligned_cols=123 Identities=26% Similarity=0.353 Sum_probs=103.6
Q ss_pred cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC-cccc-
Q 040237 91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG-FLEL- 167 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~-~~~~- 167 (219)
.+|+ +..+.+|+.|++.+|+++ ++|..++.++.|+.|++..|++. .+|..|+.++.|+.||+.+|++... +|+-
T Consensus 47 ~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcch
Confidence 4566 999999999999999998 68999999999999999999998 8999999999999999999987642 2210
Q ss_pred --------------CCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 168 --------------GKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 168 --------------~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
....+|..++++++|+.|.+..|.+- ++|..++.+.+|++|++.+|+++
T Consensus 124 f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 124 FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccceee
Confidence 01347888889999999999988884 48999999999999999998764
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.34 E-value=2.2e-14 Score=108.17 Aligned_cols=113 Identities=29% Similarity=0.446 Sum_probs=94.1
Q ss_pred ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237 92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS 171 (219)
Q Consensus 92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~ 171 (219)
+|.+..+.+++.|.++.|.++ .+|+.+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~---------~ 93 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN---------I 93 (264)
T ss_pred cccccchhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------c
Confidence 444777889999999999999 58999999999999999999999 99999999999999999999974 5
Q ss_pred ccHHHhcCCCCCEEeccCccCCCCC-----------------------cChhhcCCCCCCEeeccccc
Q 040237 172 LTNLVQKLTNLETLNLGRVLIFNTP-----------------------IPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 172 ~p~~l~~l~~L~~L~l~~N~l~~~~-----------------------~p~~l~~l~~L~~L~ls~N~ 216 (219)
+|..|+.++.|+.||+.+|+++... +|..++++++|+.|.++.|.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence 7888888888888888888776543 44555666666666666664
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.29 E-value=1.1e-12 Score=110.23 Aligned_cols=110 Identities=31% Similarity=0.412 Sum_probs=75.2
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc-c
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL-T 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~-p 173 (219)
+..+++|..|++++|-+. .+|..++.+..|+.||++.|+|. .+|..+..+..++.+-.++|++ +.+ |
T Consensus 431 l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi---------~~vd~ 498 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI---------GSVDP 498 (565)
T ss_pred HHhhhcceeeecccchhh--hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc---------cccCh
Confidence 555555555555555555 35555555555555555555555 5555555555555554455554 234 4
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+.+++|.+|..||+.+|.+ +.+|+.+++|.+|++|++++|+|.
T Consensus 499 ~~l~nm~nL~tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDL--QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCch--hhCChhhccccceeEEEecCCccC
Confidence 4599999999999999999 559999999999999999999885
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=2.5e-11 Score=93.21 Aligned_cols=110 Identities=31% Similarity=0.369 Sum_probs=32.2
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+.+..++++|+|++|.++. + +.++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|+++ .+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~---------~i~ 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS---------SIS 80 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS------------S-C
T ss_pred ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC---------ccc
Confidence 4445566777777776662 2 3444 4667777777777776 443 4556677777777777763 233
Q ss_pred HHH-hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 174 NLV-QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 174 ~~l-~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+.+ ..+++|++|++++|++....--..+..+++|+.|++.+|+++
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 333 356677777777777654222244556677777777777653
No 8
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=4e-11 Score=109.38 Aligned_cols=86 Identities=35% Similarity=0.538 Sum_probs=80.9
Q ss_pred CCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCC
Q 040237 125 RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL 204 (219)
Q Consensus 125 ~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l 204 (219)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.++| .+|..++.+++|+.|++++|++++ .+|..++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g--------~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG--------NIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC--------cCChHHhCCCCCCEEECCCCCCCC-CCchHHhcC
Confidence 36789999999999999999999999999999999965 688889999999999999999999 899999999
Q ss_pred CCCCEeecccccccC
Q 040237 205 SSLRFLSLQNCLVQG 219 (219)
Q Consensus 205 ~~L~~L~ls~N~l~G 219 (219)
++|++|++++|+++|
T Consensus 490 ~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 490 TSLRILNLNGNSLSG 504 (623)
T ss_pred CCCCEEECcCCcccc
Confidence 999999999999876
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.18 E-value=2.3e-12 Score=108.37 Aligned_cols=119 Identities=30% Similarity=0.409 Sum_probs=103.6
Q ss_pred CCCCCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhh-cCCCCcEEEccCCCC
Q 040237 83 EAASKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL-ELSNLVSLDLSGNGY 160 (219)
Q Consensus 83 ~~c~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~-~l~~L~~L~Ls~N~l 160 (219)
++|.+.-+.+|+ ++.+.+|.-|+++.|.+. .+| +|.++..|.++++..|.+. .+|.+.. .++++..||+..|++
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~--~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIR--FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccc--cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc
Confidence 345677888888 999999999999999988 466 7888899999999999988 8888765 889999999999997
Q ss_pred CCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 161 SGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 161 ~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
. ++|+.+..+++|++||+++|.+++ +|.+++++ .|+.|.+.||.+
T Consensus 265 k---------e~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 265 K---------EVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred c---------cCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeeehhhcCCch
Confidence 4 689999999999999999999987 89999999 899999999976
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.09 E-value=2.6e-11 Score=110.76 Aligned_cols=117 Identities=21% Similarity=0.333 Sum_probs=99.7
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~ 163 (219)
+.++...-+ +.+.++|+.|+|++|++. .+|+ .+.++..|+.|++|+|+++ .+|..+..+..|++|...+|++.
T Consensus 369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-- 443 (1081)
T KOG0618|consen 369 NHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-- 443 (1081)
T ss_pred Ccccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee--
Confidence 456655545 899999999999999998 4776 5889999999999999999 99999999999999999999973
Q ss_pred ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccc
Q 040237 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~ 216 (219)
.+| .+..++.|+.+|++.|+++...+|..... ++|++||+++|.
T Consensus 444 -------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 -------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred -------ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 567 78899999999999999976456654443 799999999995
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.01 E-value=6.8e-11 Score=104.67 Aligned_cols=111 Identities=27% Similarity=0.363 Sum_probs=59.1
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..++.|+.+.++.|++....+|+.+..+..|+.||||.|++. ..|..+-.-.++..|+||+|++. ++|.
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie---------tIPn 143 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE---------TIPN 143 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc---------cCCc
Confidence 3445555555555555543335555555555555555555555 55555555555555555555542 3432
Q ss_pred -HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 175 -LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 175 -~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
.+-++.-|-+||+++|.+. .+|+.+.++..|++|++++|.+
T Consensus 144 ~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred hHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChh
Confidence 2345555555555555552 3555555555555555555543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.99 E-value=3.5e-11 Score=106.47 Aligned_cols=117 Identities=23% Similarity=0.246 Sum_probs=56.4
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc--------
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE-------- 166 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~-------- 166 (219)
+-.+.+|..+|++.|++. .+|+.+-++++|+.|+||+|+++ .+.-..+...+|++|++|.|+++.. |.
T Consensus 218 ld~l~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL 293 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKL 293 (1255)
T ss_pred hhhhhhhhhccccccCCC--cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc-hHHHhhhHHH
Confidence 445555555555555554 34555555555555555555554 3333333344444444444444310 00
Q ss_pred ---------cCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 167 ---------LGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 167 ---------~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
+.-..+|..++.+..|+++..++|.+ +.+|..+.++.+|+.|.++.|++
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred HHHHhccCcccccCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhcccccce
Confidence 00123555555555555555555555 23555555555555555555543
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.98 E-value=5.3e-11 Score=104.39 Aligned_cols=121 Identities=22% Similarity=0.128 Sum_probs=66.6
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc--------
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE-------- 166 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~-------- 166 (219)
|..+.++++|+|+.|+++.. --..+.+++.|+.|+++.|.+...-++.|.-.++|++|+|++|+++...++
T Consensus 265 Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred eeeecccceeecccchhhhh-hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 55566666666666666532 223455666666666666666644556666666666666666666421100
Q ss_pred ----cCC---ccc-cHHHhcCCCCCEEeccCccCCCCCcC---hhhcCCCCCCEeecccccc
Q 040237 167 ----LGK---TSL-TNLVQKLTNLETLNLGRVLIFNTPIP---HNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 167 ----~~~---~~~-p~~l~~l~~L~~L~l~~N~l~~~~~p---~~l~~l~~L~~L~ls~N~l 217 (219)
++. ..+ ...+..+++|+.|||.+|.++. .+- ..|..|++|+.|++.+|++
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCcee
Confidence 000 011 1224455666666666666654 222 2355566677777766665
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=2.4e-09 Score=82.25 Aligned_cols=105 Identities=24% Similarity=0.262 Sum_probs=53.2
Q ss_pred cc-cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhh-hcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 95 AF-SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI-LELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 95 l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~-~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
+. .+.+|+.|++++|.++. + +.+..+++|++|++++|.++ .++..+ ..+++|+.|++++|++.. ...
T Consensus 37 L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~------l~~- 105 (175)
T PF14580_consen 37 LGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD------LNE- 105 (175)
T ss_dssp --TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S------CCC-
T ss_pred hhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC------hHH-
Confidence 44 47789999999999994 4 46888999999999999999 665555 468999999999999853 122
Q ss_pred cHHHhcCCCCCEEeccCccCCCCCcC----hhhcCCCCCCEeec
Q 040237 173 TNLVQKLTNLETLNLGRVLIFNTPIP----HNLGNLSSLRFLSL 212 (219)
Q Consensus 173 p~~l~~l~~L~~L~l~~N~l~~~~~p----~~l~~l~~L~~L~l 212 (219)
-..++.+++|++|++.+|.++. . + ..+..+|+|+.||-
T Consensus 106 l~~L~~l~~L~~L~L~~NPv~~-~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 106 LEPLSSLPKLRVLSLEGNPVCE-K-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp CGGGGG-TT--EEE-TT-GGGG-S-TTHHHHHHHH-TT-SEETT
T ss_pred hHHHHcCCCcceeeccCCcccc-h-hhHHHHHHHHcChhheeCC
Confidence 3557789999999999999976 2 3 34668899999874
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.87 E-value=3.5e-08 Score=91.47 Aligned_cols=98 Identities=23% Similarity=0.380 Sum_probs=64.1
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~ 178 (219)
++++.|++++|.++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++++|.++ .+|..+.
T Consensus 199 ~~L~~L~Ls~N~Lt--sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~---------~LP~~l~- 261 (754)
T PRK15370 199 EQITTLILDNNELK--SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT---------ELPERLP- 261 (754)
T ss_pred cCCcEEEecCCCCC--cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC---------cCChhHh-
Confidence 35777777777777 3666543 47777777777777 5665543 35777777777763 3444443
Q ss_pred CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+|+.|++++|+++. +|..+. ++|++|++++|+|+
T Consensus 262 -s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 262 -SALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred -CCCCEEECcCCccCc--cccccC--CCCcEEECCCCccc
Confidence 467778887777754 565443 46777777777765
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=2.8e-10 Score=104.17 Aligned_cols=108 Identities=27% Similarity=0.382 Sum_probs=96.9
Q ss_pred cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237 97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~ 175 (219)
.++.|+.|++.+|.++.. +-+.+.++++|+.|+|++|++. .+|+. +.++..|+.|+||+|+++ .+|..
T Consensus 357 ~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~---------~Lp~t 425 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT---------TLPDT 425 (1081)
T ss_pred hhHHHHHHHHhcCccccc-chhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh---------hhhHH
Confidence 466789999999999986 6667899999999999999998 78874 688999999999999985 79999
Q ss_pred HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+.++..|+.|...+|++.. +| .+..++.|+.+|++.|+++
T Consensus 426 va~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecccchhh
Confidence 9999999999999999955 77 8999999999999999875
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=2.3e-09 Score=89.61 Aligned_cols=114 Identities=22% Similarity=0.311 Sum_probs=71.2
Q ss_pred CCEeecCCCCCCCCC---CchhhcCC-CCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 101 ILSGNLAGNDFRYPE---IPPEIANL-SRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 101 L~~L~L~~n~l~~~~---~p~~l~~l-~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
|++|++++|++.... +...+..+ ++|+.|++++|.+++. ++..+..+.+|+.|++++|.+++. ....+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l 185 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA----GIRAL 185 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH----HHHHH
Confidence 777777777665211 22344555 6777777777777642 233455566777777777776431 01124
Q ss_pred cHHHhcCCCCCEEeccCccCCCC---CcChhhcCCCCCCEeeccccccc
Q 040237 173 TNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 173 p~~l~~l~~L~~L~l~~N~l~~~---~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+..+...++|++|++++|.+++. .++..+..+++|++|++++|+++
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 44555667888888888887641 13345567788888888888775
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=4.3e-09 Score=87.94 Aligned_cols=119 Identities=24% Similarity=0.239 Sum_probs=76.8
Q ss_pred cccC-CCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCccc
Q 040237 95 AFSI-LSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLE 166 (219)
Q Consensus 95 l~~l-~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~ 166 (219)
+..+ ++|+++++++|.+++. .++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~--- 208 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE--- 208 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH---
Confidence 4445 7788888888887742 1233456677888888888887742 333455566888888888877431
Q ss_pred cCCccccHHHhcCCCCCEEeccCccCCCCCcChhhc-----CCCCCCEeeccccccc
Q 040237 167 LGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG-----NLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 167 ~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~-----~l~~L~~L~ls~N~l~ 218 (219)
+...+...+..+++|++|++++|.+++ .....+. ..+.|++|++++|.++
T Consensus 209 -~~~~l~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 209 -GASALAETLASLKSLEVLNLGDNNLTD-AGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred -HHHHHHHHhcccCCCCEEecCCCcCch-HHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 012344556677788888888888765 2222221 1367888888888775
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.76 E-value=5.5e-09 Score=91.97 Aligned_cols=119 Identities=26% Similarity=0.256 Sum_probs=72.6
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc--cC----
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE--LG---- 168 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~--~~---- 168 (219)
+.++++|+++++..|.++ .+|.......+++.|+|.+|.++..-..++..++.|+.+|||.|.++.. +. +.
T Consensus 98 f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i-~~~sfp~~~n 174 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI-PKPSFPAKVN 174 (873)
T ss_pred HhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCCC
Confidence 666777777777777776 4666555555666666666666644444555566666666666655321 10 00
Q ss_pred -----------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 169 -----------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 169 -----------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
..--...|.++.+|..|.|++|.++. ..+..|.++++|+.|+|..|+|
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccce
Confidence 00011235566677778888888766 3345677788888888888876
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=5.1e-09 Score=66.37 Aligned_cols=59 Identities=39% Similarity=0.534 Sum_probs=36.8
Q ss_pred CCcEEEccCCCCCCCccccCCcccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 149 NLVSLDLSGNGYSGGFLELGKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 149 ~L~~L~Ls~N~l~g~~~~~~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
+|++|++++|+++ .+| ..+..+++|++|++++|.++. ..|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~---------~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT---------EIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES---------EECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC---------ccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCcC
Confidence 4566666666653 233 345666667777777776655 3445667777777777777764
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=1.4e-08 Score=94.01 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+|+.|++++|+++. +|..+.++++|+.|++++|+|+|
T Consensus 423 ~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 423 GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCc
Confidence 46677788888754 88889999999999999999976
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.69 E-value=8.8e-08 Score=93.26 Aligned_cols=107 Identities=25% Similarity=0.365 Sum_probs=72.7
Q ss_pred cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237 97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV 176 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l 176 (219)
...+|++|++.+|.+. .++..+..+++|++++++++.....+| .+..+++|+.|++++|.. ...+|..+
T Consensus 609 ~~~~L~~L~L~~s~l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~--------L~~lp~si 677 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE--KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSS--------LVELPSSI 677 (1153)
T ss_pred CccCCcEEECcCcccc--ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCC--------ccccchhh
Confidence 3466777777777766 366666777777777777665444666 366677777777777654 33567777
Q ss_pred hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccc
Q 040237 177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~ 216 (219)
+++++|+.|++++|.... .+|..+ ++++|++|++++|.
T Consensus 678 ~~L~~L~~L~L~~c~~L~-~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLE-ILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred hccCCCCEEeCCCCCCcC-ccCCcC-CCCCCCEEeCCCCC
Confidence 888888888888765444 566554 56777777777663
No 23
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=9e-09 Score=65.24 Aligned_cols=58 Identities=36% Similarity=0.474 Sum_probs=30.4
Q ss_pred CCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC
Q 040237 100 SILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG 159 (219)
Q Consensus 100 ~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~ 159 (219)
+|++|++++|+++. +| ..+..+++|++|++++|.+...-|..|..+++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555666655552 33 345555555555555555553333345555555555555554
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=4.4e-09 Score=86.10 Aligned_cols=117 Identities=27% Similarity=0.321 Sum_probs=69.6
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc--c-ccCC------
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF--L-ELGK------ 169 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~--~-~~~~------ 169 (219)
+.|+++|+++|.++ .+.++..-.+.++.|+++.|.+. .+ ..+..+++|+.||+|+|.++.-. . .++.
T Consensus 284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh--hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34566666666665 35555555666666666666665 22 23555566666666666543200 0 0000
Q ss_pred -c---cccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 170 -T---SLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 170 -~---~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+ .--..+..+-+|..||+.+|++....--..++++|-|+++.+.+|.+.|
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 0 1123456667888899999888541223568889999999999998764
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.63 E-value=5.1e-08 Score=90.42 Aligned_cols=100 Identities=20% Similarity=0.347 Sum_probs=58.8
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhc-------------------CCCCcEEEccCCC
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILE-------------------LSNLVSLDLSGNG 159 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~-------------------l~~L~~L~Ls~N~ 159 (219)
.+|+.|++++|++. .+|..+. ++|++|++++|+++ .+|..+.. .++|+.|++++|.
T Consensus 262 s~L~~L~Ls~N~L~--~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~ 336 (754)
T PRK15370 262 SALQSLDLFHNKIS--CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA 336 (754)
T ss_pred CCCCEEECcCCccC--ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCc
Confidence 36778888888777 3666553 46777777777776 44443221 1234444444444
Q ss_pred CCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 160 YSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 160 l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
++ .+|..+. ++|+.|++++|+++. +|..+. ++|++|++++|+++
T Consensus 337 Lt---------~LP~~l~--~sL~~L~Ls~N~L~~--LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 337 LT---------SLPASLP--PELQVLDVSKNQITV--LPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred cc---------cCChhhc--CcccEEECCCCCCCc--CChhhc--CCcCEEECCCCcCC
Confidence 42 2333222 467777777777754 565443 46777777777664
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.58 E-value=2.8e-07 Score=89.82 Aligned_cols=115 Identities=24% Similarity=0.371 Sum_probs=64.2
Q ss_pred CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc----------
Q 040237 98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL---------- 167 (219)
Q Consensus 98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~---------- 167 (219)
.++|+.|++++|..... +|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|..-..+|..
T Consensus 777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECC
Confidence 34556666666554443 55556666666666665554333455443 4455555555554322211110
Q ss_pred --CCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237 168 --GKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 168 --~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N 215 (219)
....+|..+..+++|+.|++++|+--. .+|..+..+++|+.+++++|
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence 012467777777888888887744323 46666777777777777766
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.55 E-value=6.9e-09 Score=90.97 Aligned_cols=103 Identities=24% Similarity=0.338 Sum_probs=67.6
Q ss_pred CCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCC
Q 040237 101 ILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT 180 (219)
Q Consensus 101 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~ 180 (219)
|+.|.+++|+++ .+|+.++.+..|..||.+.|.+. .+|++++.+.+|+.+++..|.+ ..+|..+..+
T Consensus 145 Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l---------~~lp~El~~L- 211 (722)
T KOG0532|consen 145 LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHL---------EDLPEELCSL- 211 (722)
T ss_pred ceeEEEecCccc--cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhh---------hhCCHHHhCC-
Confidence 333444444444 24445555555555555555555 5555555666666666665554 2577777744
Q ss_pred CCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.|..||++.|+++. +|-.|.+|+.|++|-|.+|.+.
T Consensus 212 pLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 212 PLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ceeeeecccCceee--cchhhhhhhhheeeeeccCCCC
Confidence 47889999999966 8999999999999999999874
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=1.8e-08 Score=82.49 Aligned_cols=68 Identities=25% Similarity=0.253 Sum_probs=56.5
Q ss_pred CchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 116 ~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~ 194 (219)
.-..+...+.|+++|+++|.++ .+-.++.-.+.++.|++|+|.+. .-+.++.+++|+.||+++|.++.
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~----------~v~nLa~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR----------TVQNLAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred eEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee----------eehhhhhcccceEeecccchhHh
Confidence 3345556788999999999999 77788888999999999999983 33458889999999999998754
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.54 E-value=5.3e-07 Score=83.70 Aligned_cols=112 Identities=23% Similarity=0.259 Sum_probs=60.5
Q ss_pred cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC-
Q 040237 91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG- 168 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~- 168 (219)
.+|+ +. .+|+.|++.+|+++ .+|.. +++|++|++++|+++ .+|.. .++|+.|++++|.++. +|...
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~~-Lp~lp~ 282 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLTH-LPALPS 282 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchhh-hhhchh
Confidence 3555 33 35677777777766 35542 456677777777666 44532 2344455555554432 01000
Q ss_pred -----------CccccHHHhcCCCCCEEeccCccCCCCCcChh---hc-------------CC-CCCCEeecccccccC
Q 040237 169 -----------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN---LG-------------NL-SSLRFLSLQNCLVQG 219 (219)
Q Consensus 169 -----------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~---l~-------------~l-~~L~~L~ls~N~l~G 219 (219)
...+|. ..++|+.|++++|++++ +|.. +. .+ .+|++|++++|+|++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~--Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS 356 (788)
T ss_pred hcCEEECcCCccccccc---cccccceeECCCCcccc--CCCCcccccccccccCccccccccccccceEecCCCccCC
Confidence 012232 23678889999888866 4431 11 11 267788888887763
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=1.6e-08 Score=88.76 Aligned_cols=114 Identities=27% Similarity=0.368 Sum_probs=70.4
Q ss_pred cccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237 89 PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL 167 (219)
Q Consensus 89 ~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~ 167 (219)
...+|+ +.++..|.+++++.|+++ .+|..++.++ |+.|-+++|+++ .+|..++....|..+|.+.|.+-
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~------ 179 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------ 179 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh------
Confidence 344555 666666666666666666 3566555554 566666666666 66666666666666666666642
Q ss_pred CCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 168 GKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 168 ~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+|..++.+.+|+.|.+..|.+.. +|.++..| .|..||++.|+++
T Consensus 180 ---slpsql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 180 ---SLPSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred ---hchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecccCcee
Confidence 566666666666666666666644 56666644 3666666666653
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.41 E-value=1.7e-07 Score=81.07 Aligned_cols=107 Identities=36% Similarity=0.506 Sum_probs=72.6
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCC-CCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLS-RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~-~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+..++.++.+++.+|.+. .+|+....++ +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|
T Consensus 112 ~~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~---------~l~ 179 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS---------DLP 179 (394)
T ss_pred hhcccceeEEecCCcccc--cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh---------hhh
Confidence 445566777777777777 4666666664 7777777777777 66666777777777777777764 455
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N 215 (219)
...+..+.|+.|++++|++.. +|........|+++.+++|
T Consensus 180 ~~~~~~~~L~~L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 180 KLLSNLSNLNNLDLSGNKISD--LPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhheeccCCcccc--CchhhhhhhhhhhhhhcCC
Confidence 555566777777777777754 6665544555666666666
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=2.7e-07 Score=79.76 Aligned_cols=70 Identities=30% Similarity=0.409 Sum_probs=48.1
Q ss_pred cccccc-cccCC-CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCC
Q 040237 89 PSTLAA-AFSIL-SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYS 161 (219)
Q Consensus 89 ~g~lp~-l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~ 161 (219)
.-.+++ ...+. +|++|++++|.+. .+|..+..+++|+.|+++.|++. .+|...+.++.|+.+++++|+++
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred cccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc
Confidence 344555 44453 7888888888877 46666777777777777777777 66665556677777777777654
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.33 E-value=5.6e-07 Score=84.91 Aligned_cols=106 Identities=32% Similarity=0.268 Sum_probs=74.9
Q ss_pred CCCCCEeecCCCC--CCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237 98 ILSILSGNLAGND--FRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175 (219)
Q Consensus 98 l~~L~~L~L~~n~--l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~ 175 (219)
.+.|++|-+.+|. +... .+..|..++.|++||+++|.-.+.+|.+++.+.+|++|+++...++ .+|..
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~---------~LP~~ 613 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS---------HLPSG 613 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc---------ccchH
Confidence 3457777777775 3321 2334777888888888877666688888888888888888887763 67888
Q ss_pred HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccc
Q 040237 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214 (219)
Q Consensus 176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~ 214 (219)
++++.+|.+|++..+.... .+|.....|.+|++|.+..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPR 651 (889)
T ss_pred HHHHHhhheeccccccccc-cccchhhhcccccEEEeec
Confidence 8888888888887766544 4555566677888877654
No 34
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2.4e-08 Score=89.89 Aligned_cols=108 Identities=25% Similarity=0.281 Sum_probs=85.2
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+.-++.++.|+|+.|.++. + +.+..+++|++||++.|.+. .+|.- ...+ +|+.|++++|.++ --
T Consensus 183 Lqll~ale~LnLshNk~~~--v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~----------tL 247 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTK--V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT----------TL 247 (1096)
T ss_pred HHHHHHhhhhccchhhhhh--h-HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH----------hh
Confidence 6778899999999999984 3 48889999999999999998 66652 2333 4999999999873 33
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
..+.++.+|+.||+++|-+.+-.--..++.+..|+.|.|.||.+
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 56788999999999999887622224466778899999999976
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=1.3e-07 Score=69.23 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=73.7
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcC-CCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIAN-LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+....+|...+|++|.+. .+|+.+.. .+.++.+++++|.++ .+|.++..++.|+.++++.|.+. ..|
T Consensus 49 l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~---------~~p 116 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN---------AEP 116 (177)
T ss_pred HhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc---------cch
Confidence 666778888899999998 57877664 458889999999998 88999999999999999999875 456
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChh
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHN 200 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~ 200 (219)
..+..+.++-.|+..+|.. .++|..
T Consensus 117 ~vi~~L~~l~~Lds~~na~--~eid~d 141 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENAR--AEIDVD 141 (177)
T ss_pred HHHHHHHhHHHhcCCCCcc--ccCcHH
Confidence 6666678888888888876 346644
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.26 E-value=1.3e-07 Score=79.82 Aligned_cols=112 Identities=26% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccC-CCCCCCccc-----cC----
Q 040237 100 SILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSG-NGYSGGFLE-----LG---- 168 (219)
Q Consensus 100 ~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~-N~l~g~~~~-----~~---- 168 (219)
.-.+++|..|.++. +|+ .|..+++|+.|||+.|.++-.-|..|..+..+..|.+.+ |+++.. |. +.
T Consensus 68 ~tveirLdqN~I~~--iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS--IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCCccc--CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHH
Confidence 45667788888873 554 677888888888888888866677788887777766655 665321 10 00
Q ss_pred --------CccccHHHhcCCCCCEEeccCccCCCCCcCh-hhcCCCCCCEeeccccc
Q 040237 169 --------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPH-NLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 169 --------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~-~l~~l~~L~~L~ls~N~ 216 (219)
.-...+.+..++++..|.+.+|.+.. ++. .+..+..++++.+..|.
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhh--hccccccchhccchHhhhcCc
Confidence 01123345555556666666665532 443 45555566666555554
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=1.4e-07 Score=69.06 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=84.7
Q ss_pred CCCEeecCCCCCCCCCCch---hhcCCCCCCEEEcccCCCCCCCchhhhcC-CCCcEEEccCCCCCCCccccCCccccHH
Q 040237 100 SILSGNLAGNDFRYPEIPP---EIANLSRLSYLNLSDSFFTGQIPSEILEL-SNLVSLDLSGNGYSGGFLELGKTSLTNL 175 (219)
Q Consensus 100 ~L~~L~L~~n~l~~~~~p~---~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l-~~L~~L~Ls~N~l~g~~~~~~~~~~p~~ 175 (219)
.+-.++|+.+.+. .+++ .+....+|+..++++|.+. ..|..|... +..+.+++++|.++ .+|..
T Consensus 28 E~h~ldLssc~lm--~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis---------dvPeE 95 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM--YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS---------DVPEE 95 (177)
T ss_pred Hhhhcccccchhh--HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh---------hchHH
Confidence 3456778888775 2554 4556778888899999999 788877654 58999999999985 68999
Q ss_pred HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
+..++.|+.|+++.|.+.. .|..+..+.++..|+..+|.+
T Consensus 96 ~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred HhhhHHhhhcccccCcccc--chHHHHHHHhHHHhcCCCCcc
Confidence 9999999999999999966 787777788898898888764
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.5e-06 Score=51.24 Aligned_cols=37 Identities=46% Similarity=0.524 Sum_probs=21.9
Q ss_pred CCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237 149 NLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 149 ~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~ 194 (219)
+|++|++++|+++ .+|..++++++|+.|++++|.++.
T Consensus 2 ~L~~L~l~~N~i~---------~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT---------DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S---------SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc---------ccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666653 355556666666666666666644
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.16 E-value=1.4e-07 Score=79.71 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=69.3
Q ss_pred CCccccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEccc-CCCCCCCch-hhhcCCCCcEEEccCCCCC
Q 040237 86 SKVPSTLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSD-SFFTGQIPS-EILELSNLVSLDLSGNGYS 161 (219)
Q Consensus 86 ~~l~g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~ 161 (219)
++....+|+ |..+++|+.|||++|.++.. -|+.|.+++++..|-+.+ |+++ .+|. .|.++..++.|.+.-|.++
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhc
Confidence 455667787 99999999999999999965 677899999888877666 8887 5554 3555555555544444322
Q ss_pred CCc-------cccC--------CccccH-HHhcCCCCCEEeccCccC
Q 040237 162 GGF-------LELG--------KTSLTN-LVQKLTNLETLNLGRVLI 192 (219)
Q Consensus 162 g~~-------~~~~--------~~~~p~-~l~~l~~L~~L~l~~N~l 192 (219)
-.. +... ...++. .+..+..++.+.+..|.+
T Consensus 154 Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 110 0000 113333 466777888888887764
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=8.3e-08 Score=86.57 Aligned_cols=104 Identities=27% Similarity=0.291 Sum_probs=83.4
Q ss_pred CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237 100 SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179 (219)
Q Consensus 100 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l 179 (219)
.|...+.+.|.+. ....++.-++.++.|||+.|+++ .. +.+..+++|+.||+++|.++ .+|..-..-
T Consensus 165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~---------~vp~l~~~g 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR---------HVPQLSMVG 231 (1096)
T ss_pred hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc---------cccccchhh
Confidence 4667788889888 46778889999999999999998 33 37899999999999999985 344322222
Q ss_pred CCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 180 ~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
..|..|.+.+|.++. -..+.++++|+.||+++|-++|
T Consensus 232 c~L~~L~lrnN~l~t---L~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 232 CKLQLLNLRNNALTT---LRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhheeeeecccHHHh---hhhHHhhhhhhccchhHhhhhc
Confidence 359999999999855 3457889999999999997764
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.5e-06 Score=49.62 Aligned_cols=35 Identities=40% Similarity=0.583 Sum_probs=17.5
Q ss_pred CCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCC
Q 040237 125 RLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGY 160 (219)
Q Consensus 125 ~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l 160 (219)
+|++|++++|+++ .+|+.+.+|++|++|++++|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 4455555555555 4444455555555555555554
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=2.7e-06 Score=80.34 Aligned_cols=108 Identities=31% Similarity=0.415 Sum_probs=83.7
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
|..++.|++||+++|.-.+. +|+.++.+-+|++|+++++.+. .+|..+.++..|.+|++..+.-. ..+|.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l--------~~~~~ 636 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL--------ESIPG 636 (889)
T ss_pred HhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccc--------ccccc
Confidence 67799999999999876664 9999999999999999999999 99999999999999999988642 23456
Q ss_pred HHhcCCCCCEEeccCccCCC-CCcChhhcCCCCCCEeec
Q 040237 175 LVQKLTNLETLNLGRVLIFN-TPIPHNLGNLSSLRFLSL 212 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~-~~~p~~l~~l~~L~~L~l 212 (219)
....+.+|++|.+..-.... ...-..+.++..|+.+..
T Consensus 637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 66679999999997654221 122234445555555443
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.1e-06 Score=75.28 Aligned_cols=114 Identities=24% Similarity=0.211 Sum_probs=59.3
Q ss_pred ccCCCCCEeecCCCCCCCCCCchh-hcCCCCCCEEEcccCCCCCC-------------------------CchhhhcCCC
Q 040237 96 FSILSILSGNLAGNDFRYPEIPPE-IANLSRLSYLNLSDSFFTGQ-------------------------IPSEILELSN 149 (219)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~~~~p~~-l~~l~~L~~L~Ls~n~l~g~-------------------------lp~~~~~l~~ 149 (219)
..+++|+.|+++.|.+... ..+. -..+++|+.|.++.|.++.. -......+..
T Consensus 169 eqLp~Le~LNls~Nrl~~~-~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNF-ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HhcccchhcccccccccCC-ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 3466666667766666532 2111 11344555555555555421 1111223345
Q ss_pred CcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChh-----hcCCCCCCEeecccccc
Q 040237 150 LVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN-----LGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 150 L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~-----l~~l~~L~~L~ls~N~l 217 (219)
|++|||++|++-. ...-...++++.|+.|+++.+.+.....|+. ...+++|++|+++.|++
T Consensus 248 L~~LdLs~N~li~-------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 248 LQELDLSNNNLID-------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred HhhccccCCcccc-------cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5666666665421 0111335566677777777766655444543 34567777777777776
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=2.3e-06 Score=74.70 Aligned_cols=107 Identities=28% Similarity=0.270 Sum_probs=70.4
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..++++..+++.+|.+.. +...+..+.+|++|++++|.++... .+..+..|+.|++++|.++. ..
T Consensus 91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~----------~~ 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD----------IS 156 (414)
T ss_pred cccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh----------cc
Confidence 6667777888888887773 4444677788888888888877332 35566667788888887642 22
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChh-hcCCCCCCEeecccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~-l~~l~~L~~L~ls~N~l 217 (219)
.+..+.+|+.+++++|.+.. +... ...+.+++.+.+.+|.+
T Consensus 157 ~~~~l~~L~~l~l~~n~i~~--ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 157 GLESLKSLKLLDLSYNRIVD--IENDELSELISLEELDLGGNSI 198 (414)
T ss_pred CCccchhhhcccCCcchhhh--hhhhhhhhccchHHHhccCCch
Confidence 34446777777777777755 2221 45566777777777654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=2.2e-06 Score=74.78 Aligned_cols=106 Identities=32% Similarity=0.311 Sum_probs=85.0
Q ss_pred cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237 97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV 176 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l 176 (219)
.+..++.++++.|.+.. +-..+..+++|+.+++..|.+. .+...+..+.+|++|++++|.++. -..+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~----------i~~l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK----------LEGL 136 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc----------ccch
Confidence 46677777888888773 3455888999999999999998 555447889999999999999853 1335
Q ss_pred hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..++.|+.|++++|.+.. ...+..++.|+.+++++|+++
T Consensus 137 ~~l~~L~~L~l~~N~i~~---~~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 137 STLTLLKELNLSGNLISD---ISGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hhccchhhheeccCcchh---ccCCccchhhhcccCCcchhh
Confidence 677779999999999966 345666899999999999875
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1.9e-06 Score=73.69 Aligned_cols=89 Identities=26% Similarity=0.234 Sum_probs=53.1
Q ss_pred cccCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEcccCCCCCCCchhh-hcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 95 AFSILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDSFFTGQIPSEI-LELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~-~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
...+++++.|||+.|-+..- .+-.....+++|+.|+++.|++.-...... ..+++|+.|.+++|.++. ..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~-------k~V 214 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW-------KDV 214 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH-------HHH
Confidence 44577778888888766521 022345577888888888887763333222 245677777888777752 223
Q ss_pred cHHHhcCCCCCEEeccCc
Q 040237 173 TNLVQKLTNLETLNLGRV 190 (219)
Q Consensus 173 p~~l~~l~~L~~L~l~~N 190 (219)
...+..+++|+.|++..|
T Consensus 215 ~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEAN 232 (505)
T ss_pred HHHHHhCCcHHHhhhhcc
Confidence 333444555555555555
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=2.2e-05 Score=72.55 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=77.3
Q ss_pred cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237 97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV 176 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l 176 (219)
-++.|+.|.+.+-.+...++-.-..++++|..||+|+.+++ .+ ..++.+.+|+.|.+.+=.+. ....-..+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-------~~~~l~~L 216 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-------SYQDLIDL 216 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-------chhhHHHH
Confidence 46788888888877764333444557888888899888887 44 57788888888877765553 11223456
Q ss_pred hcCCCCCEEeccCccCCCCC-cCh----hhcCCCCCCEeeccccccc
Q 040237 177 QKLTNLETLNLGRVLIFNTP-IPH----NLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 177 ~~l~~L~~L~l~~N~l~~~~-~p~----~l~~l~~L~~L~ls~N~l~ 218 (219)
-++++|++||+|........ +.. .-..+|.|+.||.|++.++
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 77899999999977654411 111 1235789999999987654
No 48
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.80 E-value=2.2e-05 Score=45.95 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCC
Q 040237 40 DDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAA 85 (219)
Q Consensus 40 ~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c 85 (219)
++|++||++||+++..++. ..+..|........|+|. |+.|
T Consensus 2 ~~d~~aLl~~k~~l~~~~~----~~l~~W~~~~~~~~C~W~-GV~C 42 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS----GVLSSWNPSSDSDPCSWS-GVTC 42 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-----CCCTT--TT--S-CCCST-TEEE
T ss_pred cHHHHHHHHHHHhcccccC----cccccCCCcCCCCCeeec-cEEe
Confidence 6899999999999986432 356778876434788898 7666
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.68 E-value=2.9e-05 Score=62.42 Aligned_cols=118 Identities=23% Similarity=0.245 Sum_probs=76.2
Q ss_pred CCCCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccC--CCCCCCchhhhcCCCCcEEEccCCCC
Q 040237 84 AASKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDS--FFTGQIPSEILELSNLVSLDLSGNGY 160 (219)
Q Consensus 84 ~c~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~g~lp~~~~~l~~L~~L~Ls~N~l 160 (219)
.|....|.+.. .-.+..|+.+++.+..++.. ..+..|++|++|+++.| ++.+.++.-.-.+++|++++++.|++
T Consensus 27 ~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 27 NARSGAGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred hhhhcCCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 34555555665 45566677777777766632 45677889999999999 66666665566679999999999987
Q ss_pred CCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcC--hhhcCCCCCCEee
Q 040237 161 SGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLS 211 (219)
Q Consensus 161 ~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ 211 (219)
.- ..++ ..+..+.+|..|++.+|..+...-+ ..+.-+++|++||
T Consensus 104 ~~------lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 104 KD------LSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred cc------cccc-chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 31 1112 2355667788888888776541111 2345567777765
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.59 E-value=0.00013 Score=56.92 Aligned_cols=106 Identities=27% Similarity=0.213 Sum_probs=76.4
Q ss_pred CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHh
Q 040237 98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ 177 (219)
Q Consensus 98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~ 177 (219)
+.....+|+++|.+.. -+.+..++.|.+|.+.+|+++..-|.--..+++|..|.+.+|++.. .+.+ +.+.
T Consensus 41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~------l~dl-~pLa 110 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE------LGDL-DPLA 110 (233)
T ss_pred ccccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh------hhhc-chhc
Confidence 3456778999998873 2568889999999999999984334333445789999999998742 1122 3366
Q ss_pred cCCCCCEEeccCccCCCCCc---ChhhcCCCCCCEeeccc
Q 040237 178 KLTNLETLNLGRVLIFNTPI---PHNLGNLSSLRFLSLQN 214 (219)
Q Consensus 178 ~l~~L~~L~l~~N~l~~~~~---p~~l~~l~~L~~L~ls~ 214 (219)
.+++|++|.+-+|.+.. .- -..+..+++|+.||.++
T Consensus 111 ~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 78899999999998865 11 12466789999998754
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.44 E-value=0.00012 Score=61.20 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=69.0
Q ss_pred cccCCCCCEeecCCCCCCCCCCc---hhhcCCCCCCEEEcccCCCCCCCch-h-------------hhcCCCCcEEEccC
Q 040237 95 AFSILSILSGNLAGNDFRYPEIP---PEIANLSRLSYLNLSDSFFTGQIPS-E-------------ILELSNLVSLDLSG 157 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p---~~l~~l~~L~~L~Ls~n~l~g~lp~-~-------------~~~l~~L~~L~Ls~ 157 (219)
+...++|++++||.|.+....++ .-+.+...|++|.|.+|.+. +... . .+.-+.|+.+..++
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 44566899999999988654222 23556778888888888775 2111 1 12235677777777
Q ss_pred CCCCCCc------------------------cccCCccccHHHhcCCCCCEEeccCccCCC---CCcChhhcCCCCCCEe
Q 040237 158 NGYSGGF------------------------LELGKTSLTNLVQKLTNLETLNLGRVLIFN---TPIPHNLGNLSSLRFL 210 (219)
Q Consensus 158 N~l~g~~------------------------~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~---~~~p~~l~~l~~L~~L 210 (219)
|++...- .+.+...+-..+..+++|++||+..|-|+. ..+...+..++.|+.+
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 7653210 000001123445666777777777776643 0123445556667777
Q ss_pred ecccccc
Q 040237 211 SLQNCLV 217 (219)
Q Consensus 211 ~ls~N~l 217 (219)
++++|.+
T Consensus 247 ~l~dcll 253 (382)
T KOG1909|consen 247 NLGDCLL 253 (382)
T ss_pred ccccccc
Confidence 7766655
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=0.00011 Score=59.10 Aligned_cols=95 Identities=27% Similarity=0.307 Sum_probs=64.4
Q ss_pred CchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCC
Q 040237 116 IPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNT 195 (219)
Q Consensus 116 ~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~ 195 (219)
+..-...+..|+.+.+.+..++ ++ ..+..+++|+.|.++.|.+.. .+.++.....+++|+++++++|++...
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~------~~~l~vl~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRV------SGGLEVLAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccc------cccceehhhhCCceeEEeecCCccccc
Confidence 4444445666777777666665 22 356788999999999995432 234555556679999999999998641
Q ss_pred CcChhhcCCCCCCEeeccccccc
Q 040237 196 PIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 196 ~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.--..+..+.+|..|++.+|..+
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cccchhhhhcchhhhhcccCCcc
Confidence 11123456677888898888654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=0.00013 Score=67.49 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=79.1
Q ss_pred CCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237 98 ILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQ-IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175 (219)
Q Consensus 98 l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~-lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~ 175 (219)
-.+|++|++++...-....|..++ .+|.|+.|.+.+-.+... .-....++++|..||+|+.+++ .+ ..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~---------nl-~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS---------NL-SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc---------Cc-HH
Confidence 357889999886643323555555 589999999988776522 2334467899999999999873 22 67
Q ss_pred HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
++++++|+.|.+.+=.+.....-..+.+|++|+.||+|....
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 889999999998876664311224677899999999998653
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.16 E-value=0.00024 Score=59.49 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=82.4
Q ss_pred cccCCCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLEL 167 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~ 167 (219)
...-+.|+++..+.|++... .+...+...+.|+.+.++.|.+... +-..+..+++|+.||+..|.|+-+
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e---- 228 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE---- 228 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----
Confidence 34456677888877777532 0223455667888888888887522 223567899999999999987521
Q ss_pred CCccccHHHhcCCCCCEEeccCccCCCCC---cChhh-cCCCCCCEeeccccccc
Q 040237 168 GKTSLTNLVQKLTNLETLNLGRVLIFNTP---IPHNL-GNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 168 ~~~~~p~~l~~l~~L~~L~l~~N~l~~~~---~p~~l-~~l~~L~~L~ls~N~l~ 218 (219)
+...+...+..++.|+.++++++.+.... +-..+ ...++|+.+.+.+|.++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 12235566778889999999999987511 11222 24689999999999875
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00088 Score=52.33 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=71.6
Q ss_pred CCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237 101 ILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179 (219)
Q Consensus 101 L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l 179 (219)
=+.+++++..+. .-..++ -+.+...+|+++|.+. .++ .+..++.|.+|.+++|+++. .-|..-.-+
T Consensus 21 e~e~~LR~lkip---~ienlg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~--------I~p~L~~~~ 87 (233)
T KOG1644|consen 21 ERELDLRGLKIP---VIENLGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITR--------IDPDLDTFL 87 (233)
T ss_pred cccccccccccc---chhhccccccccceecccccchh-hcc-cCCCccccceEEecCCccee--------eccchhhhc
Confidence 455666666543 112233 2456778999999986 433 57788999999999999853 223333345
Q ss_pred CCCCEEeccCccCCCCCcC--hhhcCCCCCCEeeccccccc
Q 040237 180 TNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 180 ~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ls~N~l~ 218 (219)
++|..|.+.+|.+.. +. .-+..+|+|++|.+-+|+++
T Consensus 88 p~l~~L~LtnNsi~~--l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 88 PNLKTLILTNNSIQE--LGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cccceEEecCcchhh--hhhcchhccCCccceeeecCCchh
Confidence 789999999999854 32 34667899999999998764
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=9.4e-05 Score=60.97 Aligned_cols=119 Identities=29% Similarity=0.265 Sum_probs=69.5
Q ss_pred ccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccC-CCCCC-CchhhhcCCCCcEEEccCCCCCCCcc--------
Q 040237 96 FSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDS-FFTGQ-IPSEILELSNLVSLDLSGNGYSGGFL-------- 165 (219)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~~L~~L~Ls~N~l~g~~~-------- 165 (219)
..+.+|+.+.+.++++... +-..+..-.+|+.++++.+ .++.. .---+.++..|..|+++.+.++.+.-
T Consensus 207 s~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 3455666666666666653 5556666777777777764 34311 11124667778888887776543210
Q ss_pred -------------ccCCccccHHHhcCCCCCEEeccCcc-CCCCCcChhhcCCCCCCEeeccccc
Q 040237 166 -------------ELGKTSLTNLVQKLTNLETLNLGRVL-IFNTPIPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 166 -------------~~~~~~~p~~l~~l~~L~~L~l~~N~-l~~~~~p~~l~~l~~L~~L~ls~N~ 216 (219)
++....+.....++++|.+||+++|. ++. .....+.+++.|++|.++.|.
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhc
Confidence 00011222334567888888888765 433 444566677777777777653
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00062 Score=56.28 Aligned_cols=87 Identities=31% Similarity=0.324 Sum_probs=49.4
Q ss_pred cCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237 97 SILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~ 175 (219)
..+.++++||.+|.++.= ++-..+.+|+.|++|+++.|.+...|-..--...+|+.+.|.+..+. -......
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~-------w~~~~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS-------WTQSTSS 141 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC-------hhhhhhh
Confidence 345667777777766510 02233556777777777777766433221134556777766666552 1233445
Q ss_pred HhcCCCCCEEeccCc
Q 040237 176 VQKLTNLETLNLGRV 190 (219)
Q Consensus 176 l~~l~~L~~L~l~~N 190 (219)
+..++.++.|.++.|
T Consensus 142 l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDN 156 (418)
T ss_pred hhcchhhhhhhhccc
Confidence 566666677766666
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.72 E-value=0.0069 Score=52.64 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=18.0
Q ss_pred CCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237 181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N 215 (219)
+|++|++++|.... +|..+. .+|++|+++.|
T Consensus 157 SLk~L~Is~c~~i~--LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNII--LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCccc--Cccccc--ccCcEEEeccc
Confidence 67777777766432 343332 36666766554
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00024 Score=58.09 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=40.9
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~ 178 (219)
.+.+.|+.=++.+... +....|+.|++|.|+-|+++ .+. .+..|++|++|.|..|.+.. . .--.-+.+
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~s------l-dEL~YLkn 86 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIES------L-DELEYLKN 86 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhccccc------H-HHHHHHhc
Confidence 3444555555554421 23345555666666666555 221 24455556666666655421 0 01122455
Q ss_pred CCCCCEEeccCccCCC
Q 040237 179 LTNLETLNLGRVLIFN 194 (219)
Q Consensus 179 l~~L~~L~l~~N~l~~ 194 (219)
+++|+.|.|..|.-.+
T Consensus 87 lpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCG 102 (388)
T ss_pred CchhhhHhhccCCccc
Confidence 5566666665555444
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.46 E-value=0.0085 Score=49.15 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=48.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCch----hhcCCCCCCEEEcccCCCCC----CCchhh---------hcCCCCcEEEccC
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPP----EIANLSRLSYLNLSDSFFTG----QIPSEI---------LELSNLVSLDLSG 157 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~----~l~~l~~L~~L~Ls~n~l~g----~lp~~~---------~~l~~L~~L~Ls~ 157 (219)
+..+++|+.++|+.|.|... .|+ .+++-+.|.+|.+++|.+.. ++...+ ..-+.|+......
T Consensus 88 Llkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 67789999999999999875 554 46678999999999998852 222111 1346788888888
Q ss_pred CCCC
Q 040237 158 NGYS 161 (219)
Q Consensus 158 N~l~ 161 (219)
|++.
T Consensus 167 NRle 170 (388)
T COG5238 167 NRLE 170 (388)
T ss_pred chhc
Confidence 8874
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00087 Score=55.41 Aligned_cols=86 Identities=24% Similarity=0.324 Sum_probs=44.2
Q ss_pred CCCCCCEEEcccCCCCC--CCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcCh
Q 040237 122 NLSRLSYLNLSDSFFTG--QIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPH 199 (219)
Q Consensus 122 ~l~~L~~L~Ls~n~l~g--~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~ 199 (219)
..+.++.+|+.+|.++. .+..-+.+++.|++|+++.|++...| +++| ....+|+.|-+.+..+.=...-.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-----~~lp---~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-----KSLP---LPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-----ccCc---ccccceEEEEEcCCCCChhhhhh
Confidence 34566666666666652 12223455666666666666664321 1222 22345666666555443212334
Q ss_pred hhcCCCCCCEeecccc
Q 040237 200 NLGNLSSLRFLSLQNC 215 (219)
Q Consensus 200 ~l~~l~~L~~L~ls~N 215 (219)
.+..+|.++.|+++.|
T Consensus 141 ~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhcchhhhhhhhccc
Confidence 4455566666666655
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0011 Score=54.96 Aligned_cols=111 Identities=26% Similarity=0.260 Sum_probs=65.3
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcC-CCCCCEEEcccCC--C-CCCCchhhhcCCCCcEEEccCCCCCCCccccCCc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIAN-LSRLSYLNLSDSF--F-TGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~--l-~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~ 170 (219)
+.+++.|.+|+++.+.+..+.+.-.+.. -.+|+.|+++++. + ...+..-..++++|..|||+.|.-- ..
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l-------~~ 328 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML-------KN 328 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc-------Cc
Confidence 4555666666666665543211111111 2345555555532 1 1122223457899999999988531 12
Q ss_pred cccHHHhcCCCCCEEeccCccCCCCCcCh---hhcCCCCCCEeecccc
Q 040237 171 SLTNLVQKLTNLETLNLGRVLIFNTPIPH---NLGNLSSLRFLSLQNC 215 (219)
Q Consensus 171 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p~---~l~~l~~L~~L~ls~N 215 (219)
..-..+.+++.|++|.++.++. .+|. .+...|+|.+||+.++
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence 3445677889999999998875 3454 3567789999988764
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.75 E-value=0.0024 Score=31.49 Aligned_cols=17 Identities=53% Similarity=0.804 Sum_probs=7.6
Q ss_pred CCEEEcccCCCCCCCchh
Q 040237 126 LSYLNLSDSFFTGQIPSE 143 (219)
Q Consensus 126 L~~L~Ls~n~l~g~lp~~ 143 (219)
|++||+++|+++ .+|+.
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 344444444444 44443
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.20 E-value=0.027 Score=46.29 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=69.9
Q ss_pred cccccccccCCCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCC---CCCCch-------hhhcCCCCcEEEc
Q 040237 89 PSTLAAAFSILSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFF---TGQIPS-------EILELSNLVSLDL 155 (219)
Q Consensus 89 ~g~lp~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l---~g~lp~-------~~~~l~~L~~L~L 155 (219)
.|.+..+..+..+..++|++|-+... .+...+.+-++|+..+++.--. ...+|+ .+-.|++|+..+|
T Consensus 20 k~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 20 KGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred hHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 33333355688899999999987632 1233455566777766654211 112333 2345677888888
Q ss_pred cCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC---CCcChh---------hcCCCCCCEeecccccc
Q 040237 156 SGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN---TPIPHN---------LGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 156 s~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~---~~~p~~---------l~~l~~L~~L~ls~N~l 217 (219)
|.|-+.-.+| ..+-+.++.-+.|.+|.+++|.+.- ..+... ..+-|.|+.+....|++
T Consensus 100 SDNAfg~~~~----e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 100 SDNAFGSEFP----EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cccccCcccc----hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 8887643222 1223445566677788887776532 011111 12335677777766665
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.007 Score=29.77 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=10.3
Q ss_pred CCEEeccCccCCCCCcChhhc
Q 040237 182 LETLNLGRVLIFNTPIPHNLG 202 (219)
Q Consensus 182 L~~L~l~~N~l~~~~~p~~l~ 202 (219)
|++||+++|+++ .+|..++
T Consensus 2 L~~Ldls~n~l~--~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT--SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES--EEGTTTT
T ss_pred ccEEECCCCcCE--eCChhhc
Confidence 556666666654 2554444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.0014 Score=53.76 Aligned_cols=84 Identities=30% Similarity=0.173 Sum_probs=64.9
Q ss_pred CCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhc
Q 040237 123 LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG 202 (219)
Q Consensus 123 l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~ 202 (219)
+.+.+.|+..++.++. + ....+|+.|+.|.||-|+++ --..+..+++|++|+|..|.|.+..--.-+.
T Consensus 18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIs----------sL~pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKIS----------SLAPLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccc----------cchhHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 5567788888888873 2 24568999999999999984 2355788999999999999996621124567
Q ss_pred CCCCCCEeeccccccc
Q 040237 203 NLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 203 ~l~~L~~L~ls~N~l~ 218 (219)
++++|+.|.|..|.=.
T Consensus 86 nlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCC 101 (388)
T ss_pred cCchhhhHhhccCCcc
Confidence 8999999999888643
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.44 E-value=0.052 Score=47.30 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=41.1
Q ss_pred CCCCEeecCCC-CCCCCCCchhhcCCCCCCEEEcccCCC--CCCCchhhhcC------------------CCCcEEEccC
Q 040237 99 LSILSGNLAGN-DFRYPEIPPEIANLSRLSYLNLSDSFF--TGQIPSEILEL------------------SNLVSLDLSG 157 (219)
Q Consensus 99 ~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n~l--~g~lp~~~~~l------------------~~L~~L~Ls~ 157 (219)
.+|++|++++| .+. .+|+. |+.|+++.+.. -+.+|..+..+ ++|++|++++
T Consensus 94 ~nLe~L~Ls~Cs~L~--sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~ 165 (426)
T PRK15386 94 EGLEKLTVCHCPEIS--GLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTG 165 (426)
T ss_pred hhhhheEccCccccc--ccccc------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecC
Confidence 46777777777 333 25543 45555554432 12455544333 3678888887
Q ss_pred CCCCCCccccCCccccHHHhcCCCCCEEeccCc
Q 040237 158 NGYSGGFLELGKTSLTNLVQKLTNLETLNLGRV 190 (219)
Q Consensus 158 N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N 190 (219)
|... .+|..+- .+|+.|+++.+
T Consensus 166 c~~i---------~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 166 CSNI---------ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCcc---------cCccccc--ccCcEEEeccc
Confidence 7642 1222221 47888998876
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.38 E-value=0.00099 Score=53.29 Aligned_cols=86 Identities=16% Similarity=0.141 Sum_probs=48.5
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+......+.||++.|++- .+-..+.-++.+..+|++.|.+. .+|..+++...++.+++..|..+ ..|.
T Consensus 38 i~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~---------~~p~ 105 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS---------QQPK 105 (326)
T ss_pred hhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh---------hCCc
Confidence 445555666666666554 13344555555666666666655 55666666555555555555542 4555
Q ss_pred HHhcCCCCCEEeccCccC
Q 040237 175 LVQKLTNLETLNLGRVLI 192 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l 192 (219)
.++..+.+++++.-+|.+
T Consensus 106 s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred cccccCCcchhhhccCcc
Confidence 555666666666555554
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.41 E-value=0.047 Score=24.99 Aligned_cols=9 Identities=33% Similarity=0.379 Sum_probs=3.0
Q ss_pred CEEEcccCC
Q 040237 127 SYLNLSDSF 135 (219)
Q Consensus 127 ~~L~Ls~n~ 135 (219)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.30 E-value=0.18 Score=35.92 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=23.3
Q ss_pred cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccC
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSG 157 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~ 157 (219)
+.++++|+.+.+.. .+. .+++ .+...++++.+++..+ +. .++. .+..+.+++.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~--~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK--KIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC-Cee--EeChhhccccccccccccccc-cc-ccceeeeecccccccccccc
Confidence 44555566666553 233 1322 3555556666666553 33 2222 344555566666644
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.53 E-value=0.0033 Score=50.36 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=58.6
Q ss_pred hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcC
Q 040237 119 EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP 198 (219)
Q Consensus 119 ~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p 198 (219)
.+......+.||++.|++- .+-..++.+..+..++++.|.+ ..+|..++....+..+++.+|+.+. .|
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~---------~~~~~d~~q~~e~~~~~~~~n~~~~--~p 104 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI---------KFLPKDAKQQRETVNAASHKNNHSQ--QP 104 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH---------hhChhhHHHHHHHHHHHhhccchhh--CC
Confidence 3556667777777777765 4445566667777777777764 2456666776777777777777644 67
Q ss_pred hhhcCCCCCCEeecccccc
Q 040237 199 HNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 199 ~~l~~l~~L~~L~ls~N~l 217 (219)
.+++..+.++++++.+|.|
T Consensus 105 ~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 105 KSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccccccCCcchhhhccCcc
Confidence 7777777777777776665
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.42 E-value=0.23 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=6.8
Q ss_pred CCCCEEEcccCCCC
Q 040237 124 SRLSYLNLSDSFFT 137 (219)
Q Consensus 124 ~~L~~L~Ls~n~l~ 137 (219)
++|++|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555544
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.42 E-value=0.23 Score=25.11 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=6.8
Q ss_pred CCCCEEEcccCCCC
Q 040237 124 SRLSYLNLSDSFFT 137 (219)
Q Consensus 124 ~~L~~L~Ls~n~l~ 137 (219)
++|++|++++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555544
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.63 E-value=0.28 Score=43.01 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=17.5
Q ss_pred CCCCCEEeccCcc-CCCCCcChhhcCCCCCCEeecccc
Q 040237 179 LTNLETLNLGRVL-IFNTPIPHNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 179 l~~L~~L~l~~N~-l~~~~~p~~l~~l~~L~~L~ls~N 215 (219)
+++|+.|.+.++. +++..+-.....++.|++|+++++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4555555554444 333223233334455555555544
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.38 E-value=1.1 Score=31.76 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=48.6
Q ss_pred cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCc-hhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIP-SEILELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp-~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
+.+++.++.+.+.++ +.. ++. .+...+.++.+.+.. .+. .++ ..+..+.+++.+++..+ +. .+
T Consensus 31 F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~---------~i 95 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-IT---------EI 95 (129)
T ss_dssp TTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--B---------EE
T ss_pred ccccccccccccccc-ccc--cceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-cc---------EE
Confidence 777888999999885 552 444 577787899999976 443 233 35667899999999765 31 23
Q ss_pred -cHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCC
Q 040237 173 -TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSL 207 (219)
Q Consensus 173 -p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L 207 (219)
...+.+. +++.+.+.. .+.. .-...|.+.++|
T Consensus 96 ~~~~f~~~-~l~~i~~~~-~~~~-i~~~~F~~~~~l 128 (129)
T PF13306_consen 96 GSSSFSNC-NLKEINIPS-NITK-IEENAFKNCTKL 128 (129)
T ss_dssp HTTTTTT--T--EEE-TT-B-SS-----GGG-----
T ss_pred chhhhcCC-CceEEEECC-CccE-ECCccccccccC
Confidence 3345665 888888875 3322 122445555554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.08 E-value=0.51 Score=23.29 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=7.2
Q ss_pred CCCCEeeccccccc
Q 040237 205 SSLRFLSLQNCLVQ 218 (219)
Q Consensus 205 ~~L~~L~ls~N~l~ 218 (219)
++|++|++++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666653
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.09 E-value=1.7 Score=22.28 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=5.9
Q ss_pred CCCEeecccccc
Q 040237 206 SLRFLSLQNCLV 217 (219)
Q Consensus 206 ~L~~L~ls~N~l 217 (219)
+|+.|++++|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 445555555544
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.45 E-value=0.36 Score=37.95 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCC-Cchhhh-cCCCCcEEEccCCC-CCCCccccCCccccHH
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ-IPSEIL-ELSNLVSLDLSGNG-YSGGFLELGKTSLTNL 175 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~-lp~~~~-~l~~L~~L~Ls~N~-l~g~~~~~~~~~~p~~ 175 (219)
..++.++-++..+... =-+.+..++.++.|.+.++.--+. .-..++ -.++|+.|++++|. +| ..--..
T Consensus 101 ~~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT--------~~GL~~ 171 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT--------DGGLAC 171 (221)
T ss_pred ceEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec--------hhHHHH
Confidence 3466777777766532 124566666777777766643211 111122 34688888888774 32 123345
Q ss_pred HhcCCCCCEEeccC
Q 040237 176 VQKLTNLETLNLGR 189 (219)
Q Consensus 176 l~~l~~L~~L~l~~ 189 (219)
+..+++|+.|.+.+
T Consensus 172 L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhhhhHHHHhcC
Confidence 66677777776653
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.91 E-value=1.9 Score=22.24 Aligned_cols=12 Identities=50% Similarity=0.484 Sum_probs=6.9
Q ss_pred CCCEeecccccc
Q 040237 206 SLRFLSLQNCLV 217 (219)
Q Consensus 206 ~L~~L~ls~N~l 217 (219)
+|++|++++|.|
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455666666655
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=76.85 E-value=3.5 Score=36.00 Aligned_cols=110 Identities=21% Similarity=0.182 Sum_probs=64.6
Q ss_pred cccCCCCCEeecCCC-CCCCC---CCchhhcCCCCCCEEEcccCC-CCCCCchhhh-cCCCCcEEEccCCC-CCCCcccc
Q 040237 95 AFSILSILSGNLAGN-DFRYP---EIPPEIANLSRLSYLNLSDSF-FTGQIPSEIL-ELSNLVSLDLSGNG-YSGGFLEL 167 (219)
Q Consensus 95 l~~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~-l~g~lp~~~~-~l~~L~~L~Ls~N~-l~g~~~~~ 167 (219)
....+.|+.|+++++ ..... ........+++|+.++++... ++...-..+. .+++|+.|.+..+. ++
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt------ 283 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT------ 283 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc------
Confidence 667788888888873 21110 011234456888888888877 5533323333 37889998877665 43
Q ss_pred CCccccHHHhcCCCCCEEeccCccCC-CCCcChhhcCCCCCCEee
Q 040237 168 GKTSLTNLVQKLTNLETLNLGRVLIF-NTPIPHNLGNLSSLRFLS 211 (219)
Q Consensus 168 ~~~~~p~~l~~l~~L~~L~l~~N~l~-~~~~p~~l~~l~~L~~L~ 211 (219)
...+-.....+++|++|+++.+... ...+.....++++|+.+.
T Consensus 284 -~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 284 -DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred -hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 2244455667788999999877643 211333334455555544
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.42 E-value=2 Score=22.03 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=5.7
Q ss_pred CCEEEcccCCCC
Q 040237 126 LSYLNLSDSFFT 137 (219)
Q Consensus 126 L~~L~Ls~n~l~ 137 (219)
|++|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444444
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=74.33 E-value=0.076 Score=47.37 Aligned_cols=120 Identities=23% Similarity=0.161 Sum_probs=68.8
Q ss_pred cccCCCCCEeecCCCCCCCC---CCchhhc----CCCCCCEEEcccCCCCCCCc----hhhhcCCC-CcEEEccCCCCCC
Q 040237 95 AFSILSILSGNLAGNDFRYP---EIPPEIA----NLSRLSYLNLSDSFFTGQIP----SEILELSN-LVSLDLSGNGYSG 162 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~---~~p~~l~----~l~~L~~L~Ls~n~l~g~lp----~~~~~l~~-L~~L~Ls~N~l~g 162 (219)
+....+++.++++.|.+... .++..+. ...++++|++.++.++...- ..+...++ +..+++..|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 44567777777777776310 1222333 46677777777777662211 12233344 5557777777632
Q ss_pred CccccCCccccHHHhcC-CCCCEEeccCccCCCC---CcChhhcCCCCCCEeeccccccc
Q 040237 163 GFLELGKTSLTNLVQKL-TNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 163 ~~~~~~~~~~p~~l~~l-~~L~~L~l~~N~l~~~---~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
. +...+.+.+..+ ..+++++++.|.++.. .+...+...+.++.+.++.|.+.
T Consensus 248 ~----g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 V----GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred H----HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 1 112334445555 5678888888888651 13344556677888888887764
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.73 E-value=5.8 Score=35.89 Aligned_cols=64 Identities=27% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCCCCCEEEcccCCCCCCCc---hhhhcCCCCcEEEccCC--CCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237 122 NLSRLSYLNLSDSFFTGQIP---SEILELSNLVSLDLSGN--GYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 122 ~l~~L~~L~Ls~n~l~g~lp---~~~~~l~~L~~L~Ls~N--~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~ 194 (219)
+.+.+..+.+++|++. .+- .--...++|..|+|++| .+.. ..++ ..++. ..|++|-+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~------~~el-~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS------ESEL-DKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc------hhhh-hhhcC-CCHHHeeecCCcccc
Confidence 3456666677777765 221 11233467777777777 3211 0011 11122 346677777776654
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.15 E-value=2.2 Score=33.71 Aligned_cols=63 Identities=25% Similarity=0.129 Sum_probs=29.2
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccC-CCCCCCchhhhcCCCCcEEEccC
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDS-FFTGQIPSEILELSNLVSLDLSG 157 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n-~l~g~lp~~~~~l~~L~~L~Ls~ 157 (219)
+.+++.++.|.+.++.--+...-+.++ -.++|+.|++++| +++..--..+..+++|+.|.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 445555555555555422110111122 2356666666655 34433233455556666555544
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.73 E-value=13 Score=33.74 Aligned_cols=65 Identities=25% Similarity=0.189 Sum_probs=43.7
Q ss_pred ccCCCCCEeecCCCCCCCCC-CchhhcCCCCCCEEEcccC--CCCCCCchhhh--cCCCCcEEEccCCCCCC
Q 040237 96 FSILSILSGNLAGNDFRYPE-IPPEIANLSRLSYLNLSDS--FFTGQIPSEIL--ELSNLVSLDLSGNGYSG 162 (219)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n--~l~g~lp~~~~--~l~~L~~L~Ls~N~l~g 162 (219)
.+.+.+..+++++|++.... +..--...++|+.|+|++| .+. . -.++. +...|++|.+.+|++.-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCcccc
Confidence 34567888999999987321 2222335789999999999 443 1 12333 33568899999999854
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=38.58 E-value=2 Score=38.47 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=61.3
Q ss_pred cCCCCCEeecCCCCCCCCC---CchhhcCCCC-CCEEEcccCCCCCC----CchhhhcC-CCCcEEEccCCCCCCCcccc
Q 040237 97 SILSILSGNLAGNDFRYPE---IPPEIANLSR-LSYLNLSDSFFTGQ----IPSEILEL-SNLVSLDLSGNGYSGGFLEL 167 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~---~p~~l~~l~~-L~~L~Ls~n~l~g~----lp~~~~~l-~~L~~L~Ls~N~l~g~~~~~ 167 (219)
...++++|.+.++.++... +...+...+. +..+++..|.+... +.+.+..+ ..++.++++.|.++..
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~---- 277 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEK---- 277 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcccc----
Confidence 4667888888888876321 1223445555 66688888887643 23345555 6778888888887542
Q ss_pred CCccccHHHhcCCCCCEEeccCccCCC
Q 040237 168 GKTSLTNLVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 168 ~~~~~p~~l~~l~~L~~L~l~~N~l~~ 194 (219)
+...+...+..++.++.+.+.+|.+..
T Consensus 278 ~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 278 GVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred chHHHHHHHhhhHHHHHhhcccCcccc
Confidence 123355566677788888888888755
No 87
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.52 E-value=49 Score=22.67 Aligned_cols=13 Identities=23% Similarity=0.380 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 040237 7 FFSIFVLFVFSLI 19 (219)
Q Consensus 7 ~~~~~~~~~~~l~ 19 (219)
|+++.++|.++|+
T Consensus 6 ~llL~l~LA~lLl 18 (95)
T PF07172_consen 6 FLLLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444333333
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.14 E-value=24 Score=17.43 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=8.1
Q ss_pred CCCCEeeccccc
Q 040237 205 SSLRFLSLQNCL 216 (219)
Q Consensus 205 ~~L~~L~ls~N~ 216 (219)
++|++|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 567777777763
No 89
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=37.00 E-value=32 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=18.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhh
Q 040237 1 MGLSLSFFSIFVLFVFSLIIFNFA 24 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~ 24 (219)
|+|+..|+-|.|+|+++-++|+.-
T Consensus 128 ~amLIClIIIAVLfLICT~LfLST 151 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLFLST 151 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888999888876665533
No 90
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=35.22 E-value=43 Score=22.85 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=25.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCHHHHHHHHHHHhcCccC
Q 040237 1 MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIIN 56 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~~k~~l~~~ 56 (219)
||+ +.+..+++++++.+++|-..--.. .-.+=..++..||++..+.
T Consensus 1 Mg~-~g~~elliIlvIvlllFG~~KLPe---------lg~~lGk~ik~FKka~~e~ 46 (92)
T PRK00442 1 MGI-FDWKHWIVILVVVVLVFGTKKLKN---------LGSDVGESIKGFRKAMNED 46 (92)
T ss_pred CCC-ccHHHHHHHHHHHHHHhCcchHHH---------HHHHHHHHHHHHHHHhccc
Confidence 555 455666666665555433221111 1133457888999888654
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=33.38 E-value=22 Score=31.31 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=17.3
Q ss_pred CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccc
Q 040237 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQN 214 (219)
Q Consensus 179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~ 214 (219)
+..|+.+.++++.......-+.+...++|+.+++-+
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 344555666555432212233445555666555544
No 92
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=33.25 E-value=42 Score=22.86 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=26.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCHHHHHHHHHHHhcCcc
Q 040237 1 MGLSLSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLII 55 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~~k~~l~~ 55 (219)
|++ +.+..+++++++.+++|-.--.+..+ .+=..++-.||.+..+
T Consensus 1 M~~-ig~~elliIlvV~lllfGpkKLP~l~---------r~~G~~i~~fKk~~~~ 45 (94)
T COG1826 1 MFG-IGWSELLIILVVALLVFGPKKLPEAG---------RDLGKAIREFKKAASD 45 (94)
T ss_pred CCC-CCHHHHHHHHHHHHHhcCcchhHHHH---------HHHHHHHHHHHHHHhh
Confidence 677 88888888877777764422111111 2335677777776644
No 93
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=23.59 E-value=41 Score=29.73 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCCCCCEEEcccCCCC-CC----CchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCcc-CCCC
Q 040237 122 NLSRLSYLNLSDSFFT-GQ----IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVL-IFNT 195 (219)
Q Consensus 122 ~l~~L~~L~Ls~n~l~-g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~-l~~~ 195 (219)
+.+.|+++.++.+... .. +...-..+..|..+.+++.+.. ....-+.+..+++|+.+++-+++ ++..
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i-------~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI-------TDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc-------hHHHHHHHhhCcccceeeeechhhhhhh
Confidence 3456666666644322 11 0111123455666666666542 22334456777888888887764 3332
Q ss_pred CcChhhcCCCCCCE
Q 040237 196 PIPHNLGNLSSLRF 209 (219)
Q Consensus 196 ~~p~~l~~l~~L~~ 209 (219)
.+-..-.++|+++.
T Consensus 443 ~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 443 AISRFATHLPNIKV 456 (483)
T ss_pred hhHHHHhhCcccee
Confidence 33334445555544
No 94
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=23.42 E-value=97 Score=20.15 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCHHHHHHHHHHHhcCccC
Q 040237 5 LSFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIIN 56 (219)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~~k~~l~~~ 56 (219)
+..+.+.+++++.+++|-..--+. .-.+=..++..||++..+.
T Consensus 4 ~g~~elliIl~IvlllFG~kKLPe---------lgr~lGkair~FK~~~~~~ 46 (73)
T PRK02958 4 FSIWHWLIVLVIVVLVFGTKKLRN---------IGSDLGGAVKGFKDGMKEG 46 (73)
T ss_pred ccHHHHHHHHHHHHHHhCcchHHH---------HHHHHHHHHHHHHHHhccc
Confidence 455566665555555432221111 1133468888999888654
No 95
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.98 E-value=96 Score=15.45 Aligned_cols=14 Identities=43% Similarity=0.809 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 040237 7 FFSIFVLFVFSLII 20 (219)
Q Consensus 7 ~~~~~~~~~~~l~~ 20 (219)
|-.+.++|++++++
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 44555665555544
No 96
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.69 E-value=1.1e+02 Score=15.54 Aligned_cols=15 Identities=40% Similarity=0.742 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHH
Q 040237 6 SFFSIFVLFVFSLII 20 (219)
Q Consensus 6 ~~~~~~~~~~~~l~~ 20 (219)
.|..+.++|++++++
T Consensus 7 gf~livVLFILLIIi 21 (26)
T TIGR01732 7 GFALIVVLFILLVIV 21 (26)
T ss_pred chHHHHHHHHHHHHh
Confidence 345556666555554
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.64 E-value=70 Score=34.98 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=20.2
Q ss_pred ecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCC
Q 040237 105 NLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFT 137 (219)
Q Consensus 105 ~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~ 137 (219)
||++|+|+. +|. .|..+++|++|+|++|.+.
T Consensus 1 DLSnN~Lst--Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST--IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc--cChHHhccCCCceEEEeeCCccc
Confidence 466777763 443 4666777777777777665
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.63 E-value=72 Score=34.88 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=25.9
Q ss_pred EcccCCCCCCCch-hhhcCCCCcEEEccCCCCC
Q 040237 130 NLSDSFFTGQIPS-EILELSNLVSLDLSGNGYS 161 (219)
Q Consensus 130 ~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~ 161 (219)
||++|+|+ .+|. .|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 68899999 6665 5778999999999999873
No 99
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=20.53 E-value=1.2e+02 Score=19.76 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCHHHHHHHHHHHhcCccC
Q 040237 6 SFFSIFVLFVFSLIIFNFATANFSTASSVLPICHDDERSALLQFKEGLIIN 56 (219)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~~k~~l~~~ 56 (219)
+.+.+.+++++.+++|-..--+. .-.+=..++-.||++..+.
T Consensus 5 s~~ellIIlvIvlLlFG~~KLPe---------l~r~lGk~ik~FKk~~~e~ 46 (75)
T PRK04561 5 SIWHWLVVLVIVLLVFGTKRLTS---------GAKDLGSAVKEFKKGMHDD 46 (75)
T ss_pred cHHHHHHHHHHHHHHhCCcchHH---------HHHHHHHHHHHHHHHhccc
Confidence 55566666665544432221111 1134457888999888653
Done!