Query 040237
Match_columns 219
No_of_seqs 237 out of 3277
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-24 4.9E-29 180.6 10.6 165 37-218 2-187 (313)
2 4fcg_A Uncharacterized protein 99.8 1.2E-20 4.2E-25 157.9 8.8 170 38-218 24-242 (328)
3 4eco_A Uncharacterized protein 99.8 6.3E-21 2.1E-25 172.7 6.0 177 38-219 27-344 (636)
4 4ecn_A Leucine-rich repeat pro 99.8 7.7E-21 2.6E-25 177.1 5.5 176 35-218 263-586 (876)
5 3rgz_A Protein brassinosteroid 99.8 1.8E-20 6.2E-25 172.9 7.7 168 38-219 9-214 (768)
6 3e6j_A Variable lymphocyte rec 99.7 1.9E-17 6.4E-22 131.7 13.1 112 95-218 60-172 (229)
7 3rgz_A Protein brassinosteroid 99.7 4.6E-18 1.6E-22 156.8 10.5 88 123-219 631-718 (768)
8 2v70_A SLIT-2, SLIT homolog 2 99.7 1.8E-17 6.1E-22 131.1 11.1 124 86-219 42-167 (220)
9 1w8a_A SLIT protein; signaling 99.7 1.9E-17 6.5E-22 128.2 9.8 132 75-219 6-140 (192)
10 2o6s_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 125.1 12.8 115 95-219 48-162 (208)
11 1ogq_A PGIP-2, polygalacturona 99.7 2E-17 7E-22 137.3 9.0 135 75-219 23-163 (313)
12 2v9t_B SLIT homolog 2 protein 99.7 9.8E-17 3.4E-21 126.8 11.6 113 95-218 52-165 (220)
13 2o6r_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 118.7 12.7 133 75-219 5-138 (177)
14 3m19_A Variable lymphocyte rec 99.7 5.4E-16 1.9E-20 124.6 13.2 115 95-219 79-193 (251)
15 3m19_A Variable lymphocyte rec 99.7 8.3E-16 2.9E-20 123.5 13.2 124 86-219 45-169 (251)
16 4fcg_A Uncharacterized protein 99.7 2.4E-16 8.1E-21 131.7 10.3 109 98-218 182-290 (328)
17 2wfh_A SLIT homolog 2 protein 99.7 5.9E-16 2E-20 120.0 11.7 130 75-218 8-139 (193)
18 3rfs_A Internalin B, repeat mo 99.6 1.8E-15 6.3E-20 122.9 13.3 115 95-219 105-219 (272)
19 2o6q_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 121.5 14.2 121 95-218 57-194 (270)
20 4eco_A Uncharacterized protein 99.6 2.6E-16 9E-21 142.4 7.9 130 85-218 192-366 (636)
21 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.4E-20 114.5 10.7 121 87-218 35-160 (168)
22 3e6j_A Variable lymphocyte rec 99.6 2.9E-15 9.7E-20 119.0 12.4 131 75-219 17-149 (229)
23 2v9t_B SLIT homolog 2 protein 99.6 1.6E-15 5.5E-20 119.8 10.5 131 75-219 9-142 (220)
24 3rfs_A Internalin B, repeat mo 99.6 4.4E-15 1.5E-19 120.6 13.2 118 92-219 78-195 (272)
25 3v47_A TOLL-like receptor 5B a 99.6 1.8E-15 6.1E-20 130.9 11.4 124 86-219 285-409 (455)
26 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.3E-20 111.9 9.6 117 87-214 28-149 (149)
27 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.6E-20 111.1 10.2 112 97-219 15-127 (149)
28 4ezg_A Putative uncharacterize 99.6 2.3E-15 7.7E-20 116.7 9.7 111 95-219 84-195 (197)
29 4g8a_A TOLL-like receptor 4; l 99.6 2.3E-15 7.9E-20 134.5 10.8 115 95-218 72-186 (635)
30 4ezg_A Putative uncharacterize 99.6 6.9E-15 2.4E-19 113.9 11.4 115 91-219 58-173 (197)
31 3oja_B Anopheles plasmodium-re 99.6 3.4E-15 1.2E-19 134.0 11.1 119 90-219 64-185 (597)
32 2ell_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 112.3 9.5 110 97-219 22-134 (168)
33 2z62_A TOLL-like receptor 4, v 99.6 4.4E-15 1.5E-19 120.6 10.4 123 87-218 39-162 (276)
34 3vq2_A TLR4, TOLL-like recepto 99.6 4.1E-15 1.4E-19 133.1 11.0 125 86-219 42-167 (606)
35 4b8c_D Glucose-repressible alc 99.6 2.8E-15 9.6E-20 137.6 10.0 111 95-219 220-330 (727)
36 1ozn_A Reticulon 4 receptor; N 99.6 9.8E-15 3.4E-19 119.1 12.2 121 95-217 101-237 (285)
37 1ozn_A Reticulon 4 receptor; N 99.6 7.2E-15 2.4E-19 119.9 11.3 91 95-194 149-239 (285)
38 3g39_A Variable lymphocyte rec 99.6 9.5E-15 3.2E-19 110.8 11.0 61 99-160 30-90 (170)
39 2v70_A SLIT-2, SLIT homolog 2 99.6 6.6E-15 2.3E-19 116.2 10.4 132 75-219 9-143 (220)
40 3o6n_A APL1; leucine-rich repe 99.6 4.8E-15 1.6E-19 126.1 10.3 118 90-218 58-178 (390)
41 2o6s_A Variable lymphocyte rec 99.6 1.8E-14 6.3E-19 112.2 12.3 133 75-219 5-138 (208)
42 2o6q_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 116.2 13.2 114 95-218 105-218 (270)
43 4ecn_A Leucine-rich repeat pro 99.6 1.9E-15 6.6E-20 140.9 7.6 128 86-218 435-608 (876)
44 2z66_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 122.1 8.7 123 88-219 138-262 (306)
45 2xot_A Amphoterin-induced prot 99.6 9.8E-15 3.3E-19 123.4 10.9 122 87-219 50-177 (361)
46 3v47_A TOLL-like receptor 5B a 99.6 1.1E-14 3.7E-19 125.9 10.8 124 86-219 40-168 (455)
47 2r9u_A Variable lymphocyte rec 99.6 2.7E-14 9.4E-19 108.8 11.0 101 103-217 16-117 (174)
48 1p9a_G Platelet glycoprotein I 99.6 1.9E-14 6.7E-19 118.2 10.9 113 95-218 73-185 (290)
49 3zyi_A Leucine-rich repeat-con 99.6 1.6E-14 5.5E-19 125.3 10.8 129 86-218 85-231 (452)
50 2z7x_B TOLL-like receptor 1, v 99.5 2.2E-14 7.7E-19 126.2 11.1 108 99-218 21-128 (520)
51 1p9a_G Platelet glycoprotein I 99.5 4.5E-14 1.5E-18 116.0 12.1 116 91-218 91-208 (290)
52 4g8a_A TOLL-like receptor 4; l 99.5 2E-14 6.9E-19 128.4 10.2 110 99-218 52-161 (635)
53 1dce_A Protein (RAB geranylger 99.5 3.4E-14 1.2E-18 127.0 11.5 105 100-219 442-547 (567)
54 3zyj_A Leucine-rich repeat-con 99.5 3.8E-14 1.3E-18 122.6 11.4 128 87-218 75-220 (440)
55 1wwl_A Monocyte differentiatio 99.5 5.5E-15 1.9E-19 122.4 5.7 112 99-218 149-266 (312)
56 2z66_A Variable lymphocyte rec 99.5 1.6E-14 5.5E-19 118.9 8.2 122 95-218 97-236 (306)
57 2z81_A CD282 antigen, TOLL-lik 99.5 1.5E-14 5.3E-19 127.8 8.4 123 87-218 37-161 (549)
58 2z81_A CD282 antigen, TOLL-lik 99.5 3.8E-14 1.3E-18 125.3 10.7 116 91-217 19-135 (549)
59 2id5_A Lingo-1, leucine rich r 99.5 3.2E-14 1.1E-18 124.0 10.1 112 95-216 52-163 (477)
60 1ziw_A TOLL-like receptor 3; i 99.5 5.9E-14 2E-18 127.3 11.9 121 87-218 36-158 (680)
61 1w8a_A SLIT protein; signaling 99.5 4.6E-14 1.6E-18 109.0 9.4 105 102-219 11-116 (192)
62 2z63_A TOLL-like receptor 4, v 99.5 4.4E-14 1.5E-18 125.3 10.5 124 86-218 38-162 (570)
63 3vq2_A TLR4, TOLL-like recepto 99.5 1.7E-14 5.8E-19 129.1 7.9 113 95-217 420-533 (606)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 8.3E-14 2.8E-18 123.9 11.9 108 99-218 52-159 (562)
65 3j0a_A TOLL-like receptor 5; m 99.5 3.6E-14 1.2E-18 132.2 9.8 124 86-218 34-161 (844)
66 2xot_A Amphoterin-induced prot 99.5 4.7E-14 1.6E-18 119.1 9.7 132 75-219 16-150 (361)
67 2z63_A TOLL-like receptor 4, v 99.5 2.6E-14 8.8E-19 126.8 8.5 115 95-219 417-532 (570)
68 3t6q_A CD180 antigen; protein- 99.5 4.9E-14 1.7E-18 126.1 10.4 123 86-218 43-166 (606)
69 2z80_A TOLL-like receptor 2, v 99.5 2.4E-14 8.3E-19 120.3 7.5 66 95-161 72-137 (353)
70 2z62_A TOLL-like receptor 4, v 99.5 4.6E-14 1.6E-18 114.5 8.8 114 95-217 72-189 (276)
71 1wwl_A Monocyte differentiatio 99.5 1.6E-14 5.6E-19 119.5 5.9 125 87-219 106-242 (312)
72 2wfh_A SLIT homolog 2 protein 99.5 1.5E-13 5E-18 106.4 10.9 103 102-218 13-115 (193)
73 1xku_A Decorin; proteoglycan, 99.5 1.6E-13 5.5E-18 114.1 11.4 111 95-219 167-277 (330)
74 1xku_A Decorin; proteoglycan, 99.5 2.3E-13 7.9E-18 113.1 12.0 118 99-218 52-184 (330)
75 3zyj_A Leucine-rich repeat-con 99.5 1.2E-13 4.2E-18 119.4 10.6 111 95-217 181-291 (440)
76 2z7x_B TOLL-like receptor 1, v 99.5 1.3E-13 4.4E-18 121.3 10.3 131 86-219 334-482 (520)
77 3t6q_A CD180 antigen; protein- 99.5 1.8E-13 6.3E-18 122.4 11.5 72 89-161 389-462 (606)
78 1a9n_A U2A', U2A'; complex (nu 99.5 9.5E-14 3.3E-18 105.6 8.2 113 91-217 33-152 (176)
79 1ziw_A TOLL-like receptor 3; i 99.5 2.6E-13 9E-18 123.0 12.3 125 82-219 8-135 (680)
80 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-13 5.7E-18 104.2 9.3 108 95-218 15-126 (176)
81 2id5_A Lingo-1, leucine rich r 99.5 1.3E-13 4.3E-18 120.2 9.8 121 86-217 66-188 (477)
82 3zyi_A Leucine-rich repeat-con 99.5 2.2E-13 7.6E-18 118.1 11.2 111 95-217 192-302 (452)
83 4glp_A Monocyte differentiatio 99.5 4.5E-14 1.5E-18 116.7 5.5 114 97-218 143-264 (310)
84 1xeu_A Internalin C; cellular 99.5 5.4E-13 1.8E-17 108.0 11.5 107 95-218 59-185 (263)
85 3oja_A Leucine-rich immune mol 99.4 1.4E-13 4.8E-18 120.8 8.4 118 87-218 131-250 (487)
86 3j0a_A TOLL-like receptor 5; m 99.4 2E-13 6.9E-18 127.1 9.6 122 88-218 60-187 (844)
87 1h6u_A Internalin H; cell adhe 99.4 1.2E-12 4.2E-17 108.2 13.2 107 95-219 81-187 (308)
88 2z80_A TOLL-like receptor 2, v 99.4 1.2E-13 4.2E-18 115.9 7.1 122 86-218 86-211 (353)
89 1h6u_A Internalin H; cell adhe 99.4 1.6E-12 5.5E-17 107.5 13.6 108 92-217 100-207 (308)
90 1dce_A Protein (RAB geranylger 99.4 5.2E-13 1.8E-17 119.4 11.3 113 86-212 451-567 (567)
91 1h6t_A Internalin B; cell adhe 99.4 1.6E-12 5.6E-17 106.6 13.3 106 95-218 86-191 (291)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.7E-13 1.3E-17 119.7 10.1 132 86-219 363-511 (562)
93 2o6r_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 99.5 11.2 106 101-219 9-114 (177)
94 3o53_A Protein LRIM1, AGAP0063 99.4 2.6E-13 9E-18 112.5 8.2 110 95-218 140-250 (317)
95 3oja_B Anopheles plasmodium-re 99.4 8.1E-13 2.8E-17 118.6 11.9 119 86-218 85-205 (597)
96 2ft3_A Biglycan; proteoglycan, 99.4 6.1E-13 2.1E-17 110.8 10.1 127 75-217 31-159 (332)
97 1h6t_A Internalin B; cell adhe 99.4 2.1E-12 7.2E-17 106.0 13.1 108 93-218 106-213 (291)
98 2xwt_C Thyrotropin receptor; s 99.4 1.8E-13 6.3E-18 108.8 6.2 111 95-217 51-168 (239)
99 2xwt_C Thyrotropin receptor; s 99.4 2.2E-13 7.7E-18 108.3 6.7 120 84-218 19-144 (239)
100 4b8c_D Glucose-repressible alc 99.4 4E-14 1.4E-18 130.0 2.5 99 91-202 238-337 (727)
101 4glp_A Monocyte differentiatio 99.4 2.3E-13 8E-18 112.4 6.7 120 87-219 156-286 (310)
102 1ds9_A Outer arm dynein; leuci 99.4 5.2E-15 1.8E-19 114.7 -3.1 111 92-218 40-153 (198)
103 2ifg_A High affinity nerve gro 99.4 1E-12 3.5E-17 110.0 10.5 107 76-194 7-117 (347)
104 3o6n_A APL1; leucine-rich repe 99.4 1.8E-12 6.1E-17 110.2 11.9 117 87-217 80-198 (390)
105 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.7E-17 106.2 9.8 118 92-219 34-164 (263)
106 4fmz_A Internalin; leucine ric 99.4 3.4E-12 1.2E-16 106.5 13.1 108 95-218 239-346 (347)
107 2ft3_A Biglycan; proteoglycan, 99.4 1.4E-12 4.8E-17 108.5 10.2 120 86-218 64-185 (332)
108 3oja_A Leucine-rich immune mol 99.4 3.8E-13 1.3E-17 118.1 6.3 109 98-219 119-228 (487)
109 3g39_A Variable lymphocyte rec 99.4 2.3E-12 7.9E-17 97.6 9.6 105 101-218 11-115 (170)
110 4fmz_A Internalin; leucine ric 99.4 4.9E-12 1.7E-16 105.6 11.9 109 95-219 217-325 (347)
111 1m9s_A Internalin B; cell inva 99.4 6.3E-12 2.2E-16 113.1 13.3 107 95-219 83-189 (605)
112 1m9s_A Internalin B; cell inva 99.3 7.5E-12 2.6E-16 112.6 13.1 109 92-218 102-210 (605)
113 2ast_B S-phase kinase-associat 99.3 2.2E-13 7.7E-18 113.1 2.4 117 92-216 110-233 (336)
114 3bz5_A Internalin-J, INLJ; leu 99.3 4.8E-12 1.7E-16 110.2 10.9 107 87-216 53-159 (457)
115 3o53_A Protein LRIM1, AGAP0063 99.3 1.5E-12 5.1E-17 107.9 6.3 108 98-218 119-227 (317)
116 1o6v_A Internalin A; bacterial 99.3 1.4E-11 4.7E-16 107.2 12.1 115 95-218 261-388 (466)
117 2ast_B S-phase kinase-associat 99.3 1E-12 3.4E-17 109.2 4.3 122 87-216 129-258 (336)
118 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 93.6 10.2 101 82-194 16-119 (174)
119 1o6v_A Internalin A; bacterial 99.3 3.7E-11 1.2E-15 104.5 13.8 109 92-218 236-344 (466)
120 3goz_A Leucine-rich repeat-con 99.3 2.7E-12 9.3E-17 108.2 6.4 114 100-218 52-180 (362)
121 3cvr_A Invasion plasmid antige 99.3 7.1E-12 2.4E-16 112.0 9.3 35 183-219 210-244 (571)
122 1ds9_A Outer arm dynein; leuci 99.3 5.8E-14 2E-18 108.8 -4.0 110 95-219 14-129 (198)
123 2ifg_A High affinity nerve gro 99.3 2E-11 6.8E-16 102.1 9.7 104 102-218 11-116 (347)
124 2ca6_A RAN GTPase-activating p 99.3 2.4E-12 8.2E-17 109.3 4.1 120 95-219 183-317 (386)
125 3bz5_A Internalin-J, INLJ; leu 99.3 4.7E-11 1.6E-15 104.0 12.3 104 95-219 81-184 (457)
126 3cvr_A Invasion plasmid antige 99.2 1.2E-11 4.1E-16 110.5 8.4 104 86-218 69-173 (571)
127 2ca6_A RAN GTPase-activating p 99.2 4.4E-12 1.5E-16 107.7 4.6 122 96-218 91-257 (386)
128 1jl5_A Outer protein YOPM; leu 99.2 1E-10 3.4E-15 101.8 11.7 64 92-162 146-209 (454)
129 3g06_A SSPH2 (leucine-rich rep 99.1 2.3E-10 7.9E-15 103.2 10.8 78 124-219 221-298 (622)
130 1jl5_A Outer protein YOPM; leu 99.1 3E-10 1E-14 98.8 10.2 98 99-218 111-208 (454)
131 3g06_A SSPH2 (leucine-rich rep 99.1 3E-10 1E-14 102.5 9.9 61 91-162 54-115 (622)
132 3goz_A Leucine-rich repeat-con 99.1 9.7E-11 3.3E-15 98.7 6.0 127 86-218 8-151 (362)
133 1z7x_W Ribonuclease inhibitor; 99.0 3.6E-11 1.2E-15 103.9 1.4 115 95-218 280-411 (461)
134 4ay9_X Follicle-stimulating ho 99.0 2.7E-10 9.2E-15 95.6 5.0 106 75-194 7-118 (350)
135 1z7x_W Ribonuclease inhibitor; 99.0 2E-10 6.8E-15 99.2 3.3 46 172-218 333-383 (461)
136 4ay9_X Follicle-stimulating ho 99.0 8.2E-10 2.8E-14 92.6 6.5 103 102-218 12-117 (350)
137 3ogk_B Coronatine-insensitive 98.9 2.7E-10 9.2E-15 101.3 1.3 127 86-219 388-527 (592)
138 3un9_A NLR family member X1; l 98.8 4.6E-10 1.6E-14 95.2 0.8 117 97-218 124-252 (372)
139 3un9_A NLR family member X1; l 98.8 6.7E-10 2.3E-14 94.3 -0.2 117 98-218 100-224 (372)
140 1io0_A Tropomodulin; LRR prote 98.7 3.5E-09 1.2E-13 81.1 2.8 124 90-218 26-164 (185)
141 3ogk_B Coronatine-insensitive 98.7 4.1E-09 1.4E-13 93.7 2.4 115 95-218 374-501 (592)
142 2p1m_B Transport inhibitor res 98.5 9.3E-09 3.2E-13 91.3 -0.1 114 97-218 395-519 (594)
143 3rw6_A Nuclear RNA export fact 98.5 1.3E-07 4.5E-12 76.5 6.5 82 121-211 167-257 (267)
144 3rw6_A Nuclear RNA export fact 98.4 3.4E-07 1.2E-11 74.1 6.5 89 96-187 167-258 (267)
145 2p1m_B Transport inhibitor res 98.3 4E-07 1.4E-11 80.8 3.7 114 97-215 103-221 (594)
146 3sb4_A Hypothetical leucine ri 98.3 1.7E-06 5.9E-11 71.5 7.1 101 98-212 225-328 (329)
147 1io0_A Tropomodulin; LRR prote 98.2 5.3E-07 1.8E-11 68.8 3.5 98 117-218 29-136 (185)
148 3sb4_A Hypothetical leucine ri 98.2 3.4E-06 1.2E-10 69.8 7.8 83 123-218 225-310 (329)
149 2ra8_A Uncharacterized protein 98.1 9.3E-07 3.2E-11 74.6 2.8 64 146-218 250-320 (362)
150 2ra8_A Uncharacterized protein 98.1 1.4E-06 4.8E-11 73.5 3.7 120 91-218 163-292 (362)
151 3e4g_A ATP synthase subunit S, 98.0 3.7E-06 1.3E-10 63.7 3.9 95 91-194 52-154 (176)
152 3e4g_A ATP synthase subunit S, 97.7 2.2E-05 7.5E-10 59.4 4.1 85 123-216 60-150 (176)
153 1pgv_A TMD-1, tropomodulin TMD 97.3 0.0001 3.4E-09 56.8 3.0 123 91-217 32-169 (197)
154 4fdw_A Leucine rich hypothetic 97.2 0.00084 2.9E-08 57.2 7.8 115 95-214 176-309 (401)
155 4fdw_A Leucine rich hypothetic 97.1 0.00094 3.2E-08 56.8 7.2 55 99-156 248-308 (401)
156 3rfe_A Platelet glycoprotein I 96.8 0.0028 9.7E-08 45.2 6.4 55 103-160 12-67 (130)
157 3rfe_A Platelet glycoprotein I 96.8 0.002 7E-08 45.9 5.2 55 128-192 12-67 (130)
158 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0013 4.3E-08 50.6 3.8 93 119-215 36-136 (197)
159 4gt6_A Cell surface protein; l 95.7 0.055 1.9E-06 45.4 9.1 103 95-215 261-367 (394)
160 4h09_A Hypothetical leucine ri 95.0 0.067 2.3E-06 44.4 7.4 103 95-214 236-342 (379)
161 4gt6_A Cell surface protein; l 94.9 0.052 1.8E-06 45.5 6.7 105 95-217 284-390 (394)
162 4fs7_A Uncharacterized protein 94.4 0.052 1.8E-06 45.5 5.5 103 95-215 272-376 (394)
163 4fs7_A Uncharacterized protein 94.0 0.13 4.3E-06 43.1 7.0 59 95-158 293-353 (394)
164 4h09_A Hypothetical leucine ri 92.5 0.51 1.7E-05 39.0 8.3 107 95-215 213-320 (379)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.4e-24 Score=180.57 Aligned_cols=165 Identities=26% Similarity=0.439 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCCC----------------Cccc--cccc-ccc
Q 040237 37 ICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAAS----------------KVPS--TLAA-AFS 97 (219)
Q Consensus 37 ~~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c~----------------~l~g--~lp~-l~~ 97 (219)
.|.++|++||++||+++.++. .+.+|..+..++.+.|. |+.|. .+.| .+|+ +..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~------~l~~W~~~~~~C~~~w~-gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT------TLSSWLPTTDCCNRTWL-GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG------GGTTCCTTSCTTTTCST-TEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc------cccCCCCCCCCCcCCCc-ceEeCCCCCCceEEEEECCCCCccCCcccChhHhC
Confidence 499999999999999996542 35677654322223499 66663 3556 7787 999
Q ss_pred CCCCCEeecCC-CCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237 98 ILSILSGNLAG-NDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLV 176 (219)
Q Consensus 98 l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l 176 (219)
+++|++|++++ |.+.+. +|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ .+|..+
T Consensus 75 l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--------~~p~~~ 145 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG--------TLPPSI 145 (313)
T ss_dssp CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES--------CCCGGG
T ss_pred CCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC--------cCChHH
Confidence 99999999995 889886 99999999999999999999999999999999999999999999854 567778
Q ss_pred hcCCCCCEEeccCccCCCCCcChhhcCCC-CCCEeeccccccc
Q 040237 177 QKLTNLETLNLGRVLIFNTPIPHNLGNLS-SLRFLSLQNCLVQ 218 (219)
Q Consensus 177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~-~L~~L~ls~N~l~ 218 (219)
..+++|++|++++|.+++ .+|..+.+++ +|++|++++|+++
T Consensus 146 ~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp GGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEEE
T ss_pred hcCCCCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCCeee
Confidence 888888888888888887 7888888887 8888888888775
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.2e-20 Score=157.86 Aligned_cols=170 Identities=18% Similarity=0.288 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHhcCccCCCCcccCCCCCCCc--cCCCCcccccCCCCC----------------------CCcccccc
Q 040237 38 CHDDERSALLQFKEGLIINVPIEESHHNYPWSY--ECRPKVASWKQGEAA----------------------SKVPSTLA 93 (219)
Q Consensus 38 ~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~--~~~~~~~~W~~~~~c----------------------~~l~g~lp 93 (219)
+..+|++||++||+.+..++. .+...|.. ++.+..|.|. |+.| +.+. .+|
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~----~~~~~w~~~~~~~~~~~~~~-g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRN----RWHSAWRQANSNNPQIETRT-GRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCT----THHHHHHHHTTTCTTSCCSH-HHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred cCchHHHHHHHHHHhccCCch----hhhhhhcccccccccccccC-CcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 456899999999998865443 23345641 2345788897 4444 2333 577
Q ss_pred c-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC----
Q 040237 94 A-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG---- 168 (219)
Q Consensus 94 ~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~---- 168 (219)
+ +..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..-
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred hhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 7 888999999999999988 38888889999999999999988 888888899999999999888777665311
Q ss_pred --------------------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 169 --------------------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 169 --------------------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
...+|..++++++|++|++++|.+++ +|..+..+++|++|++++|++.
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTC
T ss_pred chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcch
Confidence 11456666666777777777776654 5556666666777776666554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=6.3e-21 Score=172.67 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=132.5
Q ss_pred CCHHHHHHHHHHHhcCccCCCCccc---CCCCCCCccCCCCcccc---cCCCCC-------------CCccccccc-ccc
Q 040237 38 CHDDERSALLQFKEGLIINVPIEES---HHNYPWSYECRPKVASW---KQGEAA-------------SKVPSTLAA-AFS 97 (219)
Q Consensus 38 ~~~~~~~aL~~~k~~l~~~~~~~~~---~~~~~w~~~~~~~~~~W---~~~~~c-------------~~l~g~lp~-l~~ 97 (219)
...+|++||.++++++.++.+...+ .....|..+ ..+|.| . |+.| +++.|.+|+ +++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~--~~~c~w~~~~-GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN--KELDMWGAQP-GVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS--SCGGGTTCCT-TEEECTTCCEEEEECTTSCCEEEECGGGGG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC--CCcccccCCC-CeEEcCCCCEEEEEecCcccCCcCChHHhc
Confidence 3467999999999999877543221 223467754 378999 6 7777 457788888 999
Q ss_pred CCCCCEeecCCCCC------CC----------------------------------------------------------
Q 040237 98 ILSILSGNLAGNDF------RY---------------------------------------------------------- 113 (219)
Q Consensus 98 l~~L~~L~L~~n~l------~~---------------------------------------------------------- 113 (219)
+++|++|++++|.+ .+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999998854 00
Q ss_pred ------------CCCchhhcCCCCCCEEEcccCCCCCC-----------------Cchhhh--cCCCCcEEEccCCCCCC
Q 040237 114 ------------PEIPPEIANLSRLSYLNLSDSFFTGQ-----------------IPSEIL--ELSNLVSLDLSGNGYSG 162 (219)
Q Consensus 114 ------------~~~p~~l~~l~~L~~L~Ls~n~l~g~-----------------lp~~~~--~l~~L~~L~Ls~N~l~g 162 (219)
..+|+.++++++|++|++++|.++|. +|..++ ++++|++|++++|.+.|
T Consensus 184 ~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp CTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred hhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 01677788899999999999999875 888888 89999999999998887
Q ss_pred CccccC-----------------Cc-cccHHHhcC------CCCCEEeccCccCCCCCcCh--hhcCCCCCCEeeccccc
Q 040237 163 GFLELG-----------------KT-SLTNLVQKL------TNLETLNLGRVLIFNTPIPH--NLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 163 ~~~~~~-----------------~~-~~p~~l~~l------~~L~~L~l~~N~l~~~~~p~--~l~~l~~L~~L~ls~N~ 216 (219)
.+|..- .+ .+|..++++ ++|++|++++|.++. +|. .++++++|++|++++|+
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCc
Confidence 666310 12 466767665 788888888888764 777 78888888888888888
Q ss_pred ccC
Q 040237 217 VQG 219 (219)
Q Consensus 217 l~G 219 (219)
++|
T Consensus 342 l~g 344 (636)
T 4eco_A 342 LEG 344 (636)
T ss_dssp CEE
T ss_pred Ccc
Confidence 763
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=7.7e-21 Score=177.09 Aligned_cols=176 Identities=15% Similarity=0.112 Sum_probs=121.7
Q ss_pred CCCCCHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccc------------cCCCCC-------------CCcc
Q 040237 35 LPICHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASW------------KQGEAA-------------SKVP 89 (219)
Q Consensus 35 ~~~~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W------------~~~~~c-------------~~l~ 89 (219)
.+.+..+|++||++||+++.++.| ...+|..+..++.|+| . |+.| +++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~~W-----~~~~~~~~~~~~~C~W~~~~~~~~w~~~~-GV~C~~~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGKNW-----RYYSGTINNTIHSLNWNFNKELDMWGDQP-GVDLDNNGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGC-----CCCCSSCSSCCCCCSCCCSSCGGGTTCCT-TEEECTTSCEEEEECTTTCCE
T ss_pred ccccchHHHHHHHHHHHHcCCCCC-----CcCCCcccccCCccccccccccccccCcC-ceEecCCCCEEEEECccCCCC
Confidence 334567899999999999976521 1111111233345788 5 6666 4577
Q ss_pred ccccc-cccCCCCCEeec-CCCCCCCC-----------------------------------------------------
Q 040237 90 STLAA-AFSILSILSGNL-AGNDFRYP----------------------------------------------------- 114 (219)
Q Consensus 90 g~lp~-l~~l~~L~~L~L-~~n~l~~~----------------------------------------------------- 114 (219)
|.+|+ ++++++|++|+| ++|.+.|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 88888 999999999999 66643221
Q ss_pred ----------------------CCchhhcCCCCCCEEEcccCCCCC-----------------CCchhhh--cCCCCcEE
Q 040237 115 ----------------------EIPPEIANLSRLSYLNLSDSFFTG-----------------QIPSEIL--ELSNLVSL 153 (219)
Q Consensus 115 ----------------------~~p~~l~~l~~L~~L~Ls~n~l~g-----------------~lp~~~~--~l~~L~~L 153 (219)
.+|+.+.++++|++|++++|.++| .+|..++ ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 067778888899999999999887 3888876 88899999
Q ss_pred EccCCCCCCCcccc-----------------CCc-cccHHHhcCC-------CCCEEeccCccCCCCCcCh--hhcCCCC
Q 040237 154 DLSGNGYSGGFLEL-----------------GKT-SLTNLVQKLT-------NLETLNLGRVLIFNTPIPH--NLGNLSS 206 (219)
Q Consensus 154 ~Ls~N~l~g~~~~~-----------------~~~-~~p~~l~~l~-------~L~~L~l~~N~l~~~~~p~--~l~~l~~ 206 (219)
++++|.+.|.+|.. -.+ .+|..+++++ +|++|++++|.++ .+|. .++++++
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVK 574 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTT
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCC
Confidence 99988887765521 011 3555555444 6777777777765 3666 7777777
Q ss_pred CCEeeccccccc
Q 040237 207 LRFLSLQNCLVQ 218 (219)
Q Consensus 207 L~~L~ls~N~l~ 218 (219)
|++|++++|+++
T Consensus 575 L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 575 LGLLDCVHNKVR 586 (876)
T ss_dssp CCEEECTTSCCC
T ss_pred CCEEECCCCCcc
Confidence 777777777664
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=1.8e-20 Score=172.89 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHhcCccCCCCcccCCCCCCCccCCCCcccccCCCCC------------CCcccc---ccc-cccCCCC
Q 040237 38 CHDDERSALLQFKEGLIINVPIEESHHNYPWSYECRPKVASWKQGEAA------------SKVPST---LAA-AFSILSI 101 (219)
Q Consensus 38 ~~~~~~~aL~~~k~~l~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~c------------~~l~g~---lp~-l~~l~~L 101 (219)
..++|++||++||+++.++. .+.+|..+. .+|+|. |+.| .++.|. +|+ +.++++|
T Consensus 9 ~~~~~~~all~~k~~~~~~~------~l~~W~~~~--~~C~w~-gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN------LLPDWSSNK--NPCTFD-GVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT------SSTTCCTTS--CGGGST-TEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred CCHHHHHHHHHHHhhCCCcc------cccCCCCCC--CCcCCc-ceEECCCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 35789999999999998543 366786433 689999 7777 335565 555 5555555
Q ss_pred CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch--hhhcCCCCcEEEccCCCCCCCccccC-----------
Q 040237 102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS--EILELSNLVSLDLSGNGYSGGFLELG----------- 168 (219)
Q Consensus 102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~--~~~~l~~L~~L~Ls~N~l~g~~~~~~----------- 168 (219)
+.++++.+.+. .+|+.+..+++|++|++++|.++|.+|. .++++++|++|++++|.+++.+|...
T Consensus 80 ~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 80 ESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp CEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 55555555443 2344555555555555555555555555 55555555555555555543222100
Q ss_pred ------CccccHH---HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 169 ------KTSLTNL---VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 169 ------~~~~p~~---l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+..|.. +.++++|++|++++|.+++ .+|. ..+++|++|++++|+++|
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~--~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISG-DVDV--SRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES-CCBC--TTCTTCCEEECCSSCCCS
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccc-cCCc--ccCCcCCEEECcCCcCCC
Confidence 1123333 4566666666666666655 3332 566777777777776653
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.9e-17 Score=131.67 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=70.7
Q ss_pred cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+..+++|++|++++|.+.. +| ..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|
T Consensus 60 ~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---------~lp 128 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---------ELP 128 (229)
T ss_dssp TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------SCC
T ss_pred hhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc---------ccC
Confidence 5555566666666666553 33 23455666666666666665333334455666666666666553 466
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCBC
T ss_pred cccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCcc
Confidence 667777888888888888866 34456777788888888888765
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=4.6e-18 Score=156.82 Aligned_cols=88 Identities=30% Similarity=0.447 Sum_probs=69.5
Q ss_pred CCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhc
Q 040237 123 LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG 202 (219)
Q Consensus 123 l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~ 202 (219)
+++|++||+++|+++|.+|..++.+++|+.|++++|.++| .+|..++++++|++||+++|+++| .+|..+.
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--------~ip~~l~~L~~L~~LdLs~N~l~g-~ip~~l~ 701 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG--------SIPDEVGDLRGLNILDLSSNKLDG-RIPQAMS 701 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEE-CCCGGGG
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC--------CCChHHhCCCCCCEEECCCCcccC-cCChHHh
Confidence 3456666666666666677677777777777777777644 678888999999999999999998 8899999
Q ss_pred CCCCCCEeecccccccC
Q 040237 203 NLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 203 ~l~~L~~L~ls~N~l~G 219 (219)
++++|++|++++|+++|
T Consensus 702 ~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GCCCCSEEECCSSEEEE
T ss_pred CCCCCCEEECcCCcccc
Confidence 99999999999998875
No 8
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=131.07 Aligned_cols=124 Identities=16% Similarity=0.073 Sum_probs=104.1
Q ss_pred CCccccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237 86 SKVPSTLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163 (219)
Q Consensus 86 ~~l~g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~ 163 (219)
+.+++..+. +..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 42 N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 119 (220)
T 2v70_A 42 NEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC- 119 (220)
T ss_dssp SCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-
T ss_pred CcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-
Confidence 344444444 78899999999999999864 45578999999999999999997767778999999999999999854
Q ss_pred ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
..|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus 120 -------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 120 -------VGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp -------BCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred -------ECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCcC
Confidence 446678889999999999999988 668889999999999999998763
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.9e-17 Score=128.17 Aligned_cols=132 Identities=20% Similarity=0.125 Sum_probs=110.6
Q ss_pred CcccccCCCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCc
Q 040237 75 KVASWKQGEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLV 151 (219)
Q Consensus 75 ~~~~W~~~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~ 151 (219)
+.|.|. ..+|.+ --+.+|. +.. ++++|++++|.+.+. .+. .+..+++|++|++++|.+++..|..+..+++|+
T Consensus 6 C~C~~~-~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 6 CHCEGT-TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp SEEETT-EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEECCC-EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 667786 566632 2356676 433 899999999999853 333 489999999999999999988899999999999
Q ss_pred EEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 152 ~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+|++++|++++ ..+..+..+++|++|++++|++++ ..|..+..+++|++|++++|++++
T Consensus 82 ~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 82 ELQLGENKIKE--------ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EEECCSCCCCE--------ECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999999954 345567889999999999999998 778899999999999999999875
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1e-16 Score=125.11 Aligned_cols=115 Identities=23% Similarity=0.218 Sum_probs=83.4
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|+++.. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ..+.
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~ 118 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS--------LPDG 118 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTT
T ss_pred hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc--------cCHh
Confidence 66777888888888877742 33346777888888888888774444456777888888888887743 2234
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+..+++|++|++++|.+++ ..+..+..+++|++|++++|++.+
T Consensus 119 ~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC
T ss_pred HhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec
Confidence 46778888888888888877 444557888888888888887754
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=2e-17 Score=137.27 Aligned_cols=135 Identities=21% Similarity=0.407 Sum_probs=116.5
Q ss_pred CcccccCCCCCCC--ccccccc-cccCCCCCEeecCCCCCCC--CCCchhhcCCCCCCEEEccc-CCCCCCCchhhhcCC
Q 040237 75 KVASWKQGEAASK--VPSTLAA-AFSILSILSGNLAGNDFRY--PEIPPEIANLSRLSYLNLSD-SFFTGQIPSEILELS 148 (219)
Q Consensus 75 ~~~~W~~~~~c~~--l~g~lp~-l~~l~~L~~L~L~~n~l~~--~~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~~~~~l~ 148 (219)
...+|..+.+|.. ..|.... .....++++|++++|.+.+ . +|+.+..+++|++|++++ |.+.+.+|..+.+++
T Consensus 23 ~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~ 101 (313)
T 1ogq_A 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101 (313)
T ss_dssp GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT
T ss_pred cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCC
Confidence 4678976555433 6665443 2223689999999999997 6 899999999999999995 999999999999999
Q ss_pred CCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 149 NLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 149 ~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+|++|++++|.+++ .+|..+.++++|++|++++|.+++ .+|..+..+++|++|++++|+++|
T Consensus 102 ~L~~L~Ls~n~l~~--------~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~ 163 (313)
T 1ogq_A 102 QLHYLYITHTNVSG--------AIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISG 163 (313)
T ss_dssp TCSEEEEEEECCEE--------ECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCEEECcCCeeCC--------cCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccC
Confidence 99999999999943 678889999999999999999998 899999999999999999999863
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=9.8e-17 Score=126.78 Aligned_cols=113 Identities=19% Similarity=0.144 Sum_probs=86.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+..+++|++|++++|.+.+. .|..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+++ ..|
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~--------~~~ 121 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC--------LRV 121 (220)
T ss_dssp STTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC--------CCT
T ss_pred hhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCE--------eCH
Confidence 67778888888888888764 5677888888888888888887 4444 45778888888888888753 345
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus 122 ~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 122 DAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcC
Confidence 667788888888888888877 45566888888888888888764
No 13
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=4.2e-16 Score=118.70 Aligned_cols=133 Identities=18% Similarity=0.078 Sum_probs=105.1
Q ss_pred CcccccCCCCCCCc-cccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEE
Q 040237 75 KVASWKQGEAASKV-PSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSL 153 (219)
Q Consensus 75 ~~~~W~~~~~c~~l-~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L 153 (219)
+.|+|. ++.|.+. ...+|. ...+++++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 5 C~C~~~-~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 5 CSCSGT-EIRCNSKGLTSVPT-GIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp CEEETT-EEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEeCCC-EEEecCCCCccCCC-CCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 667887 6666432 233444 2236899999999999953 44567899999999999999995555567899999999
Q ss_pred EccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 154 DLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 154 ~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
++++|.+++ ..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++|
T Consensus 82 ~l~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQS--------LPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccc--------cCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeec
Confidence 999999964 334457889999999999999987 444556889999999999999875
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=5.4e-16 Score=124.56 Aligned_cols=115 Identities=20% Similarity=0.153 Sum_probs=70.7
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.++.. .+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++ ..+.
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~ 149 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--------IPAG 149 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTT
T ss_pred hccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--------cCHH
Confidence 55555666666666665532 33345556666666666666653333334556666666666666532 2233
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.++.+++|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCceeC
Confidence 56777788888888888776 445567777888888888887753
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=8.3e-16 Score=123.46 Aligned_cols=124 Identities=20% Similarity=0.195 Sum_probs=105.4
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
+.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 45 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 121 (251)
T 3m19_A 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-- 121 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--
T ss_pred CCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC--
Confidence 445555555 88999999999999999975 66678999999999999999996666678999999999999999853
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus 122 ------~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 122 ------LPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp ------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ------cChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCc
Confidence 233446889999999999999987 455579999999999999999864
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.67 E-value=2.4e-16 Score=131.75 Aligned_cols=109 Identities=25% Similarity=0.348 Sum_probs=56.9
Q ss_pred CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHh
Q 040237 98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ 177 (219)
Q Consensus 98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~ 177 (219)
+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ .+|..++
T Consensus 182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~--------~~p~~~~ 250 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR--------NYPPIFG 250 (328)
T ss_dssp STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCC--------BCCCCTT
T ss_pred CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchh--------hhHHHhc
Confidence 344444444444443 24444444444444444444444 234444444555555555544432 3445555
Q ss_pred cCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 178 KLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 178 ~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+++|++|++++|.+.+ .+|..+.++++|++|++++|++.
T Consensus 251 ~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp CCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTC
T ss_pred CCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCch
Confidence 66666666666666665 56666666666666666666554
No 17
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=119.96 Aligned_cols=130 Identities=20% Similarity=0.158 Sum_probs=107.2
Q ss_pred CcccccCCCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237 75 KVASWKQGEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152 (219)
Q Consensus 75 ~~~~W~~~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~ 152 (219)
+.|.|. .+.|.+ --..+|. +. +++++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 8 C~C~~~-~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 8 CTCLDT-VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp CEEETT-EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEeCCC-EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 455565 556633 2345665 43 58999999999998 48899999999999999999999766778999999999
Q ss_pred EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
|++++|.+++ ..+..+..+++|++|++++|.++. ..+..+..+++|++|++++|++.
T Consensus 83 L~Ls~N~l~~--------i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRC--------IPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCB--------CCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCE--------eCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence 9999999954 345568899999999999999977 44456889999999999999875
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.8e-15 Score=122.91 Aligned_cols=115 Identities=23% Similarity=0.212 Sum_probs=72.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ..+.
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~ 175 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--------LPEG 175 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTT
T ss_pred hcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--------cCHH
Confidence 55566666666666666542 33345566666666666666664434445566666666666666542 2334
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.++.+++|++|++++|.+++ ..|..+..+++|++|++++|+++|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc
Confidence 45677888888888888877 555667778888888888887754
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.9e-15 Score=121.52 Aligned_cols=121 Identities=21% Similarity=0.202 Sum_probs=61.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc-C----
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL-G---- 168 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~-~---- 168 (219)
+..+++|++|++++|.++. +|. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.. .
T Consensus 57 ~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134 (270)
T ss_dssp SSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC
Confidence 5555666666666666552 333 2355555666666655555333334455555555555555554321100 0
Q ss_pred ----------Ccccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 169 ----------KTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 169 ----------~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
...+| ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus 135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCC
Confidence 00122 224555666666666666655 33344556666666666666554
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=2.6e-16 Score=142.38 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=99.0
Q ss_pred CCCccccccc-cccCCCCCEeecCCCCCCCCC-----------------Cchhhc--CCCCCCEEEcccCCCCCCCchhh
Q 040237 85 ASKVPSTLAA-AFSILSILSGNLAGNDFRYPE-----------------IPPEIA--NLSRLSYLNLSDSFFTGQIPSEI 144 (219)
Q Consensus 85 c~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~g~lp~~~ 144 (219)
|+.++| +|+ +.++++|++|++++|.+++ . +|+.+. ++++|++|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 456666 666 7777777777777777774 1 666666 77777777777777777777777
Q ss_pred hcCCCCcEEEccCCC-CCC-Ccccc-------------C--------CccccH--HHhcCCCCCEEeccCccCCCCCcCh
Q 040237 145 LELSNLVSLDLSGNG-YSG-GFLEL-------------G--------KTSLTN--LVQKLTNLETLNLGRVLIFNTPIPH 199 (219)
Q Consensus 145 ~~l~~L~~L~Ls~N~-l~g-~~~~~-------------~--------~~~~p~--~l~~l~~L~~L~l~~N~l~~~~~p~ 199 (219)
+++++|++|++++|+ ++| .+|.. . ...+|. .++++++|++|++++|.++| .+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-chh-
Confidence 777777777777776 666 44310 0 125777 89999999999999999998 799
Q ss_pred hhcCCCCCCEeeccccccc
Q 040237 200 NLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 200 ~l~~l~~L~~L~ls~N~l~ 218 (219)
.+..+++|++|++++|+++
T Consensus 348 ~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp CCEEEEEESEEECCSSEEE
T ss_pred hhCCCCCCCEEECCCCccc
Confidence 8999999999999999874
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.6e-15 Score=114.46 Aligned_cols=121 Identities=22% Similarity=0.216 Sum_probs=103.8
Q ss_pred Ccc-ccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 87 KVP-STLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 87 ~l~-g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
.+. +.+|. +..+++|++|++++|.++. + ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.
T Consensus 35 ~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 110 (168)
T 2ell_A 35 KSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI- 110 (168)
T ss_dssp BCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS-
T ss_pred CCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc-
Confidence 354 67888 7899999999999999984 5 7789999999999999999977888888899999999999998641
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcC---hhhcCCCCCCEeeccccccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP---HNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p---~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..+..+++|++|++++|.+++ ..+ ..+..+++|++|++++|.+.
T Consensus 111 ------~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 111 ------STLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ------GGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ------hhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence 122678899999999999999987 333 37889999999999999764
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=2.9e-15 Score=118.98 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=109.6
Q ss_pred CcccccCCCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237 75 KVASWKQGEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152 (219)
Q Consensus 75 ~~~~W~~~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~ 152 (219)
+.|+|. +++|.+ --..+|. +. ++|++|++++|.+.+. .|..+..+++|++|++++|+++...+..+..+++|++
T Consensus 17 ~~Cs~~-~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 17 CSCSGT-TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp CEEETT-EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEeCC-EeEccCCCcCccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 678898 677744 2455665 43 8899999999999975 6788999999999999999998444456789999999
Q ss_pred EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
|++++|.+++ ..+..+..+++|++|++++|.++. +|..+..+++|++|++++|++++
T Consensus 93 L~Ls~N~l~~--------l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 93 LDLGTNQLTV--------LPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp EECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCC
T ss_pred EECCCCcCCc--------cChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCc
Confidence 9999999854 234457889999999999999965 89999999999999999999864
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=1.6e-15 Score=119.78 Aligned_cols=131 Identities=22% Similarity=0.187 Sum_probs=109.0
Q ss_pred CcccccCCCCCCCc-cccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237 75 KVASWKQGEAASKV-PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152 (219)
Q Consensus 75 ~~~~W~~~~~c~~l-~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~ 152 (219)
+.|.|. .++|.+. -..+|. +. +++++|++++|+++.. .+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 9 C~C~~~-~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 9 CTCSNN-IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp SEEETT-EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CEECCC-EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 566776 6677432 234555 43 6899999999999963 4457899999999999999999777889999999999
Q ss_pred EEccCCCCCCCccccCCcccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 153 LDLSGNGYSGGFLELGKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 153 L~Ls~N~l~g~~~~~~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
|++++|.+++ +| ..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus 85 L~Ls~N~l~~---------l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 85 LVLYGNKITE---------LPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp EECCSSCCCC---------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCcCCc---------cCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCE
Confidence 9999999853 34 346889999999999999988 677889999999999999999864
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=4.4e-15 Score=120.65 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=96.4
Q ss_pred ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237 92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS 171 (219)
Q Consensus 92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~ 171 (219)
++.+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++ .
T Consensus 78 ~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~ 148 (272)
T 3rfs_A 78 ISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--------L 148 (272)
T ss_dssp CGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------C
T ss_pred chhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--------c
Confidence 34488888999999999998864 45567889999999999999986666667889999999999998853 2
Q ss_pred ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+..++.+++|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCcCCc
Confidence 34456888999999999999987 556667899999999999998864
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.62 E-value=1.8e-15 Score=130.87 Aligned_cols=124 Identities=23% Similarity=0.135 Sum_probs=108.0
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
+.+.+..|. +..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 361 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-- 361 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE--
T ss_pred ccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc--
Confidence 455666666 88999999999999999975 67789999999999999999997778889999999999999999853
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
..|..+..+++|++|++++|++++ ..+..+..+++|++|++++|++++
T Consensus 362 ------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 362 ------LGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp ------ECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------cChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCccc
Confidence 457788999999999999999987 445567899999999999999875
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.8e-15 Score=111.86 Aligned_cols=117 Identities=23% Similarity=0.233 Sum_probs=96.6
Q ss_pred Ccc-ccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 87 KVP-STLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 87 ~l~-g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
.+. +.+|. +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.
T Consensus 28 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~- 103 (149)
T 2je0_A 28 RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL- 103 (149)
T ss_dssp BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH-
T ss_pred cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh-
Confidence 455 67777 7889999999999999884 4 6788899999999999999977888888899999999999998531
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcC---hhhcCCCCCCEeeccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP---HNLGNLSSLRFLSLQN 214 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p---~~l~~l~~L~~L~ls~ 214 (219)
..+..++.+++|++|++++|.+++ ..+ ..+..+++|++|++++
T Consensus 104 ------~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 104 ------STIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ------HHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred ------HHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 234678889999999999999977 333 4788899999998864
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=2.5e-15 Score=111.12 Aligned_cols=112 Identities=26% Similarity=0.277 Sum_probs=97.7
Q ss_pred cCCCCCEeecCCCCCC-CCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237 97 SILSILSGNLAGNDFR-YPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~-~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~ 175 (219)
..+++++|++++|.+. +. +|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ .+|..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~--------~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG--------GLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTTB-CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS--------CTHHH
T ss_pred CCccCeEEEccCCcCChhH-HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc--------hHHHH
Confidence 3468999999999998 54 888889999999999999999955 678899999999999999954 47888
Q ss_pred HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 176 VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 176 l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+..+++|++|++++|.+++...+..+..+++|++|++++|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 88899999999999999771133789999999999999999864
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=2.3e-15 Score=116.70 Aligned_cols=111 Identities=22% Similarity=0.304 Sum_probs=77.6
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC-CCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG-YSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~-l~g~~~~~~~~~~p 173 (219)
+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+|
T Consensus 84 l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~---------~~~ 153 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT---------DIM 153 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC---------CCG
T ss_pred hhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc---------ccH
Confidence 66677777777777777653 56667777777777777777776667777777777777777776 42 333
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.+
T Consensus 154 -~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC----
T ss_pred -hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCcccCC
Confidence 46777788888888888765 44 57777888888888887753
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=2.3e-15 Score=134.54 Aligned_cols=115 Identities=23% Similarity=0.218 Sum_probs=80.3
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
|.++++|++|+|++|++++. .|..|.++++|++|++++|++++..+..|.++++|++|++++|++++ ..+.
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~--------l~~~ 142 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--------LENF 142 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC--------STTC
T ss_pred HhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC--------CChh
Confidence 66777777777777777642 33457777777777777777774444456777777777777777643 1223
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.++++++|++|++++|.+++..+|..+..+++|++|++++|+++
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 46777888888888888765456777778888888888888765
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=6.9e-15 Score=113.93 Aligned_cols=115 Identities=21% Similarity=0.174 Sum_probs=100.7
Q ss_pred cccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCc
Q 040237 91 TLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170 (219)
Q Consensus 91 ~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~ 170 (219)
.+|.+..+++|++|++++|.+. .++.+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .
T Consensus 58 ~l~~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~--------~ 126 (197)
T 4ezg_A 58 DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD--------D 126 (197)
T ss_dssp CCTTGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB--------G
T ss_pred ChHHHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC--------c
Confidence 4556888999999999999776 3457899999999999999999878888999999999999999984 3
Q ss_pred cccHHHhcCCCCCEEeccCcc-CCCCCcChhhcCCCCCCEeecccccccC
Q 040237 171 SLTNLVQKLTNLETLNLGRVL-IFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 171 ~~p~~l~~l~~L~~L~l~~N~-l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
..+..++.+++|++|++++|. +.. +| .+..+++|++|++++|++++
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBCCCC
T ss_pred HhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCCCcC
Confidence 567889999999999999998 644 66 68999999999999999864
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=3.4e-15 Score=134.02 Aligned_cols=119 Identities=18% Similarity=0.078 Sum_probs=101.1
Q ss_pred ccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237 90 STLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL 167 (219)
Q Consensus 90 g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~ 167 (219)
+.+|+ +..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----- 137 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS----- 137 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-----
Confidence 45666 67889999999999999864 56689999999999999999997777778999999999999999853
Q ss_pred CCccccH-HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 168 GKTSLTN-LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 168 ~~~~~p~-~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+|. .++++++|++|++++|.+++ ..|..+..+++|++|++++|.+++
T Consensus 138 ----l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 138 ----LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ----CCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSB
T ss_pred ----CCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCC
Confidence 443 35889999999999999988 667788999999999999998764
No 32
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.9e-15 Score=112.26 Aligned_cols=110 Identities=29% Similarity=0.318 Sum_probs=97.3
Q ss_pred cCCCCCEeecCCCCCC-CCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHH
Q 040237 97 SILSILSGNLAGNDFR-YPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNL 175 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~-~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~ 175 (219)
..++|++|++++|.+. +. +|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ .+|..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~-i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~--------~~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG--------GLDML 90 (168)
T ss_dssp CTTSCSEEECCSCBCBTTB-CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS--------CCCHH
T ss_pred CcccCCEEECCCCCCChhh-HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch--------HHHHH
Confidence 3478999999999998 54 888889999999999999999854 678899999999999999954 47788
Q ss_pred HhcCCCCCEEeccCccCCCCCcC--hhhcCCCCCCEeecccccccC
Q 040237 176 VQKLTNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 176 l~~l~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ls~N~l~G 219 (219)
+.++++|++|++++|.+++ +| ..+..+++|++|++++|++++
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp HHHCTTCCEEECBSSSCCS--SGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred HhhCCCCCEEeccCCccCc--chhHHHHhcCCCCCEEEeeCCcCcc
Confidence 8889999999999999977 44 789999999999999999864
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=4.4e-15 Score=120.62 Aligned_cols=123 Identities=21% Similarity=0.186 Sum_probs=83.6
Q ss_pred Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 040237 87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL 165 (219)
Q Consensus 87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~ 165 (219)
.+++..+. +..+++|++|++++|.+... .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 114 (276)
T 2z62_A 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--- 114 (276)
T ss_dssp CCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC---
T ss_pred cccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc---
Confidence 34443333 67777788888888877743 34467777788888888887776555667777788888887777743
Q ss_pred ccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 166 ELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 166 ~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..++.+++|++|++++|.+.+..+|..+.++++|++|++++|+++
T Consensus 115 -----~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 115 -----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp -----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred -----cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 122235667777777777777765335677777777777777777664
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.59 E-value=4.1e-15 Score=133.09 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=101.5
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
+.+++..+. +.++++|++|++++|.+++. .|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-- 118 (606)
T 3vq2_A 42 NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-- 118 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC--
T ss_pred CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc--
Confidence 445555554 88899999999999998864 56778899999999999999987778889999999999999998854
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
..+..++++++|++|++++|.+.+..+|..++++++|++|++++|++++
T Consensus 119 ------~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 119 ------LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp ------SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ------ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 2234578888999999999988753578889999999999999988753
No 35
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.8e-15 Score=137.61 Aligned_cols=111 Identities=26% Similarity=0.341 Sum_probs=101.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---------~lp~ 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT---------SLPA 287 (727)
T ss_dssp --CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS---------SCCS
T ss_pred hccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC---------ccCh
Confidence 788999999999999998 48988889999999999999999 99999999999999999999984 5788
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.++++++|++|+|++|.++. +|..++++++|++|++++|+|+|
T Consensus 288 ~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCS
T ss_pred hhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCC
Confidence 89999999999999999954 89889999999999999999975
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=9.8e-15 Score=119.07 Aligned_cols=121 Identities=21% Similarity=0.163 Sum_probs=54.7
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc-cC-----
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE-LG----- 168 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~-~~----- 168 (219)
+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+. +.
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 44455555555555555432 334444555555555555555433333344555555555555544321000 00
Q ss_pred ----------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 169 ----------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 169 ----------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
.+..|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCE
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCc
Confidence 11123344444555555555555544 2223345555555555555544
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=7.2e-15 Score=119.89 Aligned_cols=91 Identities=21% Similarity=0.140 Sum_probs=57.0
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.++.. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ..+.
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~ 219 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--------LPTE 219 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--------CCHH
T ss_pred hccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc--------CCHH
Confidence 44555555555555555531 22235555566666666666555555556666666666666666532 3346
Q ss_pred HHhcCCCCCEEeccCccCCC
Q 040237 175 LVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~ 194 (219)
.+..+++|++|++++|.+..
T Consensus 220 ~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp HHTTCTTCCEEECCSSCEEC
T ss_pred HcccCcccCEEeccCCCccC
Confidence 68999999999999999976
No 38
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=9.5e-15 Score=110.85 Aligned_cols=61 Identities=21% Similarity=0.194 Sum_probs=27.8
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCC
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGY 160 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l 160 (219)
+++++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 30 ~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 30 TTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4444455555544432 333444444555555555544422222334444455555554444
No 39
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=6.6e-15 Score=116.23 Aligned_cols=132 Identities=19% Similarity=0.111 Sum_probs=108.5
Q ss_pred CcccccCCCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCc
Q 040237 75 KVASWKQGEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLV 151 (219)
Q Consensus 75 ~~~~W~~~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~ 151 (219)
+.|.|. ..+|.+ --..+|. +. ..+++|++++|.+++. .| ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 9 C~C~~~-~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 9 CRCEGT-TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp CEEETT-EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEE-CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEECCC-EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCcc-CchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 567777 566632 2344665 43 3568999999999964 34 3588999999999999999976677899999999
Q ss_pred EEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 152 ~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+|++++|.+++ ..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus 85 ~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 85 EILLTSNRLEN--------VQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp EEECCSSCCCC--------CCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCC
T ss_pred EEECCCCccCc--------cCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCE
Confidence 99999999954 445668899999999999999998 678889999999999999999874
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.59 E-value=4.8e-15 Score=126.11 Aligned_cols=118 Identities=19% Similarity=0.068 Sum_probs=98.2
Q ss_pred ccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237 90 STLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLEL 167 (219)
Q Consensus 90 g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~ 167 (219)
+.+|+ +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------ 130 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------ 130 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------
T ss_pred hhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC------
Confidence 44666 67889999999999999854 4558899999999999999999777777899999999999999885
Q ss_pred CCccccHH-HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 168 GKTSLTNL-VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 168 ~~~~~p~~-l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+|.. ++++++|++|++++|.+.+ ..|..+..+++|++|++++|+++
T Consensus 131 ---~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 131 ---SLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCS
T ss_pred ---cCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCC
Confidence 34444 5788999999999999877 56677888999999999998875
No 41
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.8e-14 Score=112.25 Aligned_cols=133 Identities=17% Similarity=0.103 Sum_probs=105.9
Q ss_pred CcccccCCCCCCCc-cccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEE
Q 040237 75 KVASWKQGEAASKV-PSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSL 153 (219)
Q Consensus 75 ~~~~W~~~~~c~~l-~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L 153 (219)
+.|.|. ++.|.+. ...+|. ...+++++|++++|+++.. .+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 5 C~C~~~-~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 5 CSCSGT-TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp CEEETT-EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEECCC-EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence 667898 6777442 223443 2246899999999999953 44568899999999999999995545567899999999
Q ss_pred EccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 154 DLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 154 ~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
++++|.+++ ..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus 82 ~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 82 NLSTNQLQS--------LPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp ECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcCCc--------cCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccce
Confidence 999999853 233457889999999999999987 555668899999999999998864
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.3e-14 Score=116.24 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=73.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ..+.
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~ 175 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--------VPEG 175 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--------CCTT
T ss_pred cccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--------eChh
Confidence 44455555555555555532 33344555555555555555553323335555666666666665532 2234
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCee
Confidence 57889999999999999987 44556889999999999999875
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.9e-15 Score=140.85 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=97.8
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCC-----------------CCCchhhc--CCCCCCEEEcccCCCCCCCchhhh
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRY-----------------PEIPPEIA--NLSRLSYLNLSDSFFTGQIPSEIL 145 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~-----------------~~~p~~l~--~l~~L~~L~Ls~n~l~g~lp~~~~ 145 (219)
+.++| +|+ +.++++|++|++++|.+++ . +|+.++ ++++|++|++++|.+.+.+|..++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~-iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY-ENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH-TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc-CChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 45666 666 7777777777777777775 2 666666 777777777777777777777777
Q ss_pred cCCCCcEEEccCCC-CCC-Cccc--------------cC--------CccccH--HHhcCCCCCEEeccCccCCCCCcCh
Q 040237 146 ELSNLVSLDLSGNG-YSG-GFLE--------------LG--------KTSLTN--LVQKLTNLETLNLGRVLIFNTPIPH 199 (219)
Q Consensus 146 ~l~~L~~L~Ls~N~-l~g-~~~~--------------~~--------~~~~p~--~l~~l~~L~~L~l~~N~l~~~~~p~ 199 (219)
++++|+.|++++|+ ++| .+|. +. ...+|. .++++++|++|++++|.++ .+|
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-
Confidence 77777777777776 666 3331 10 126787 8999999999999999996 488
Q ss_pred hhcCCCCCCEeeccccccc
Q 040237 200 NLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 200 ~l~~l~~L~~L~ls~N~l~ 218 (219)
.++.+++|++|++++|+++
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CCCTTSEESEEECCSSCCS
T ss_pred hhcCCCcceEEECcCCccc
Confidence 8999999999999999875
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=4.7e-15 Score=122.09 Aligned_cols=123 Identities=24% Similarity=0.281 Sum_probs=86.8
Q ss_pred ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc
Q 040237 88 VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE 166 (219)
Q Consensus 88 l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~ 166 (219)
+.+..+. +..+++|++|++++|.+.+..+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 213 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---- 213 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB----
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc----
Confidence 3344444 66677777777777776641156667777777777777777776556677777777777777777643
Q ss_pred cCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCC-CCCEeecccccccC
Q 040237 167 LGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLS-SLRFLSLQNCLVQG 219 (219)
Q Consensus 167 ~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~-~L~~L~ls~N~l~G 219 (219)
..+..+..+++|++|++++|.+++ ..|..+..++ +|++|++++|++++
T Consensus 214 ----~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 214 ----LDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ----CCSGGGTTCTTCCEEECTTSCCCB-CSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ----cChhhccCcccCCEeECCCCCCcc-cCHHHHHhhhccCCEEEccCCCeec
Confidence 223456778888888888888887 6777777774 88888888888753
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=9.8e-15 Score=123.35 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=90.9
Q ss_pred Cccccccc-cc-cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 87 KVPSTLAA-AF-SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 87 ~l~g~lp~-l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
.+++..+. +. .+++|++|++++|+++.. .+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus 50 ~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-- 126 (361)
T 2xot_A 50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-- 126 (361)
T ss_dssp CCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--
T ss_pred CCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE--
Confidence 33433333 54 788888888888888853 44568888888888888888885555567888888888888888742
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhh----cCCCCCCEeecccccccC
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNL----GNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l----~~l~~L~~L~ls~N~l~G 219 (219)
..|..+..+++|++|++++|.+++ +|..+ ..+++|++|++++|+|++
T Consensus 127 ------~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 127 ------VDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp ------ECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSCCCC
T ss_pred ------ECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 345678888899999999999876 56543 568899999999998763
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=1.1e-14 Score=125.94 Aligned_cols=124 Identities=20% Similarity=0.151 Sum_probs=101.2
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCC-chhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEI-PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~ 163 (219)
+.+.+..|. +.++++|++|++++|.+.+. + +..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 117 (455)
T 3v47_A 40 NSIAELNETSFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG- 117 (455)
T ss_dssp SCCCEECTTTTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT-
T ss_pred CccCcCChhHhccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc-
Confidence 445555565 88899999999999988754 5 4568889999999999999987778889999999999999998854
Q ss_pred ccccCCccccHH--HhcCCCCCEEeccCccCCCCCcChh-hcCCCCCCEeecccccccC
Q 040237 164 FLELGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 164 ~~~~~~~~~p~~--l~~l~~L~~L~l~~N~l~~~~~p~~-l~~l~~L~~L~ls~N~l~G 219 (219)
..+.. ++.+++|++|++++|.+++ ..|.. +.++++|++|++++|++++
T Consensus 118 -------~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 118 -------AVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp -------HHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred -------cccCcccccCcccCCEEECCCCccCc-cCcccccCCCCcccEEeCCCCcccc
Confidence 34444 7888999999999999987 55655 7889999999999998764
No 47
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=2.7e-14 Score=108.77 Aligned_cols=101 Identities=24% Similarity=0.230 Sum_probs=47.2
Q ss_pred EeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH-HHhcCCC
Q 040237 103 SGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN-LVQKLTN 181 (219)
Q Consensus 103 ~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~-~l~~l~~ 181 (219)
.+++++|++. .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++ +|. .+..+++
T Consensus 16 ~l~~~~n~l~--~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------i~~~~~~~l~~ 82 (174)
T 2r9u_A 16 LVNCQNIRLA--SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA---------IPTGVFDKLTQ 82 (174)
T ss_dssp EEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------CCTTTTTTCTT
T ss_pred EEEeCCCCCC--ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc---------cChhHhCCcch
Confidence 4455555544 2444332 445555555555554444445555555555555555432 221 2344455
Q ss_pred CCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 182 LETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 182 L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
|++|++++|++++ ..+..+..+++|++|++++|++
T Consensus 83 L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 83 LTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCB
T ss_pred hhEEECCCCccce-eCHHHhccccCCCEEEeCCCCc
Confidence 5555555555544 2222344555555555555544
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=1.9e-14 Score=118.15 Aligned_cols=113 Identities=22% Similarity=0.182 Sum_probs=77.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
...+++|++|++++|.+. .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++ ..+.
T Consensus 73 ~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--------~~~~ 142 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--------LPPG 142 (290)
T ss_dssp CSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--------CCTT
T ss_pred CCCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc--------cChh
Confidence 345566666666666666 366666777777777777777774444567777777777777777643 2234
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+..+++|++|++++|++++ ..+..+..+++|++|++++|+++
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred hcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC
Confidence 45677888888888888866 33345677888888888888775
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=1.6e-14 Score=125.35 Aligned_cols=129 Identities=23% Similarity=0.162 Sum_probs=85.0
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
+++.+..+. +.++++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 85 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred CcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence 344444455 77888888888888888764 5567888888888888888888444445777888888888888775321
Q ss_pred ccc----------------CCcccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 165 LEL----------------GKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 165 ~~~----------------~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+.. ....++ ..+..+++|++|++++|.+++ +| .+..+++|++|++++|+++
T Consensus 164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCCS
T ss_pred HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcCc
Confidence 100 011122 235566677777777777755 34 3666777777777777664
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=126.15 Aligned_cols=108 Identities=26% Similarity=0.221 Sum_probs=76.9
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~ 178 (219)
+++++|++++|.+.+. .|..+..+++|++|++++|++++..|..+..+++|++|++++|.++ .+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV---------KISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---------EEECC--C
T ss_pred ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---------ecCcc--c
Confidence 6777777777777754 4566777777777777777777666677777777777777777764 34443 5
Q ss_pred CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+++|++|++++|.+++..+|..++++++|++|++++|+++
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 6777777777777765345677777777777777777664
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=4.5e-14 Score=115.95 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=90.2
Q ss_pred cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCC
Q 040237 91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGK 169 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~ 169 (219)
.+|. +..+++|++|++++|++++. .|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------- 162 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE------- 162 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-------
T ss_pred cCchhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-------
Confidence 5666 77888888888888888853 44568888888888888888885555556788888888888888753
Q ss_pred cccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 170 TSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 170 ~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+| ..+..+++|++|++++|.++. +|..+..+++|+++++++|++.
T Consensus 163 --l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 --LPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred --cCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCcc
Confidence 33 345678888888888888864 7888888888888888888764
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.54 E-value=2e-14 Score=128.43 Aligned_cols=110 Identities=22% Similarity=0.188 Sum_probs=95.1
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~ 178 (219)
+++++|+|++|+++.. .+..|.++++|++|++++|++++..|..|.++++|++|+|++|++++ -.+..+.+
T Consensus 52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--------l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--------LALGAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECGGGGTT
T ss_pred cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--------CCHHHhcC
Confidence 4789999999999953 44579999999999999999996556679999999999999999853 23456899
Q ss_pred CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+++|++|++++|++++ ..+..++++++|++|++++|+++
T Consensus 123 L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 123 LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp CTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccc
Confidence 9999999999999987 44567999999999999999875
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=3.4e-14 Score=127.02 Aligned_cols=105 Identities=22% Similarity=0.221 Sum_probs=92.5
Q ss_pred CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237 100 SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179 (219)
Q Consensus 100 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l 179 (219)
.|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~---------lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN---------VD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---------CG-GGTTC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC---------Cc-ccCCC
Confidence 47789999999984 776 899999999999999999 889999999999999999999853 56 78899
Q ss_pred CCCCEEeccCccCCCCCc-ChhhcCCCCCCEeecccccccC
Q 040237 180 TNLETLNLGRVLIFNTPI-PHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 180 ~~L~~L~l~~N~l~~~~~-p~~l~~l~~L~~L~ls~N~l~G 219 (219)
++|++|++++|.+++ .. |..++.+++|+.|++++|+++|
T Consensus 508 ~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 508 PRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCC
Confidence 999999999999988 44 8899999999999999998864
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.53 E-value=3.8e-14 Score=122.57 Aligned_cols=128 Identities=23% Similarity=0.147 Sum_probs=81.0
Q ss_pred Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 040237 87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL 165 (219)
Q Consensus 87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~ 165 (219)
.+.+..+. +.++++|++|++++|.+... .+..+..+++|++|++++|+++...+..+..+++|++|++++|.+++..+
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 153 (440)
T 3zyj_A 75 QIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153 (440)
T ss_dssp CCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred cCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH
Confidence 33433334 77777777777777777753 44567777777777777777774434456777777777777777643111
Q ss_pred cc----------------CCcccc-HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 166 EL----------------GKTSLT-NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 166 ~~----------------~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.. ....++ ..+.++++|++|++++|.++. +| .+..+++|++|++++|+++
T Consensus 154 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTCSSCCEEECTTSCCC
T ss_pred HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCCcccCEEECCCCccC
Confidence 00 011222 245667777777777777754 45 3667777888888887765
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=5.5e-15 Score=122.37 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=64.2
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCC--Cchhh--hcCCCCcEEEccCCCCCCCccccCCcccc-
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ--IPSEI--LELSNLVSLDLSGNGYSGGFLELGKTSLT- 173 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~--lp~~~--~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p- 173 (219)
++|++|++++|.+.+. .|..+..+++|++|++++|++.+. +|..+ ..+++|++|++++|.+++ ...++
T Consensus 149 ~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~ 221 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET------PSGVCS 221 (312)
T ss_dssp TTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC------HHHHHH
T ss_pred CCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc------hHHHHH
Confidence 5555555555555542 334555555555555555555433 22333 455556666666555532 11222
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeeccccccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..+++|++|++++|.+++ ..| ..+..+++|++|++++|+++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCS-SCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHHhcCCCCCEEECCCCcCCc-ccchhhhhhcCCCCEEECCCCccC
Confidence 234566778888888888776 443 44556778888888888765
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.53 E-value=1.6e-14 Score=118.89 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=64.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC-cccc-C---
Q 040237 95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG-FLEL-G--- 168 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~-~~~~-~--- 168 (219)
+..+++|++|++++|.+.+. .+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +|.. .
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSEEESS-TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCccccc-ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 55555555555555555432 11 2444555555555555555444444444455555555555544320 0000 0
Q ss_pred ------------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 169 ------------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 169 ------------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
....|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|+++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCc
Confidence 11234556667777777777777765 34445667777777777777665
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.53 E-value=1.5e-14 Score=127.83 Aligned_cols=123 Identities=27% Similarity=0.279 Sum_probs=79.4
Q ss_pred Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 040237 87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL 165 (219)
Q Consensus 87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~ 165 (219)
.+++..|. +.++++|++|++++|++.+. .|..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++.
T Consensus 37 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-- 113 (549)
T 2z81_A 37 KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL-- 113 (549)
T ss_dssp CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS--
T ss_pred ccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc--
Confidence 34444444 77777777888877777754 556677777788888887777765555677777788888877777531
Q ss_pred ccCCccccHHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeeccccccc
Q 040237 166 ELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 166 ~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~N~l~ 218 (219)
..|..++++++|++|++++|.+.+ .+| ..+.++++|++|++++|+++
T Consensus 114 -----~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 114 -----GVTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp -----CSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCC
T ss_pred -----chhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCccc
Confidence 233445566666666666665433 343 35566666666666666554
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.52 E-value=3.8e-14 Score=125.30 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=101.3
Q ss_pred cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCC
Q 040237 91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGK 169 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~ 169 (219)
.+|+ +. +++++|++++|++++. .|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------- 88 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS------- 88 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-------
T ss_pred cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-------
Confidence 4565 43 7899999999999975 67789999999999999999998777889999999999999999954
Q ss_pred ccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 170 TSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 170 ~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
..|..++++++|++|++++|.+++..+|..++++++|++|++++|++
T Consensus 89 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 89 -LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp -CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred -cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence 45566999999999999999998634678899999999999999973
No 59
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=124.00 Aligned_cols=112 Identities=27% Similarity=0.226 Sum_probs=55.2
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+.+. .|..+.++++|++|++++|.++...+..+..+++|++|++++|.+++ ..+.
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~ 122 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--------LLDY 122 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE--------ECTT
T ss_pred ccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc--------CChh
Confidence 55566666666666665543 45555666666666666666553222234555666666666665532 2233
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~ 216 (219)
.+..+++|++|++++|.+.+ ..|..+..+++|++|++++|+
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCC
T ss_pred HccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCc
Confidence 33444444444444444433 223334444444444444443
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=5.9e-14 Score=127.26 Aligned_cols=121 Identities=24% Similarity=0.155 Sum_probs=78.8
Q ss_pred Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCc
Q 040237 87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
.+++..+. +.++++|++|++++|.+.+. .|..+.++++|++|++++|.++ .+|. .+..+++|++|++++|.+++
T Consensus 36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-- 111 (680)
T 1ziw_A 36 QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQK-- 111 (680)
T ss_dssp CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCC--
T ss_pred CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCc--
Confidence 34443333 66777777777777777654 5666777777777777777776 3443 46777777777777777643
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..|..++++++|++|++++|.+++ ..|..+.++++|++|++++|+++
T Consensus 112 ------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 112 ------IKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp ------CCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCC
T ss_pred ------cChhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCccc
Confidence 223456666777777777777766 55566666777777777776654
No 61
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=4.6e-14 Score=108.99 Aligned_cols=105 Identities=23% Similarity=0.267 Sum_probs=91.2
Q ss_pred CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCC
Q 040237 102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT 180 (219)
Q Consensus 102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~ 180 (219)
+++++++|+++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++ ..|..+..++
T Consensus 11 ~~l~~s~~~l~--~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGRGLK--EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--------IEPNAFEGAS 78 (192)
T ss_dssp TEEECTTSCCS--SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--------BCTTTTTTCT
T ss_pred CEEEcCCCCcC--cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--------cCHhHcCCcc
Confidence 78999999997 58876654 999999999999955554 48999999999999999964 4577889999
Q ss_pred CCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus 79 ~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 79 HIQELQLGENKIKE-ISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp TCCEEECCSCCCCE-ECSSSSTTCTTCCEEECCSSCCCE
T ss_pred cCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCe
Confidence 99999999999988 666779999999999999999864
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.52 E-value=4.4e-14 Score=125.25 Aligned_cols=124 Identities=21% Similarity=0.181 Sum_probs=91.7
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
+.+++..+. +.++++|++|++++|++.+. .|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l- 115 (570)
T 2z63_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL- 115 (570)
T ss_dssp CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS-
T ss_pred CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccC-
Confidence 344444444 78888888888888888753 456688888888888888888866667788888888888888887531
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+..++++++|++|++++|.+.+..+|..++++++|++|++++|+++
T Consensus 116 -------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 116 -------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp -------TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred -------CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 11236778888888888888765346778888888888888888764
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=1.7e-14 Score=129.08 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=47.1
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ-IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~-lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+++ ..|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~ 490 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ--------ISW 490 (606)
T ss_dssp TTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE--------ECT
T ss_pred hhccccCCEEECcCCCCCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc--------cCh
Confidence 33344444444444444332 333344444444444444444331 33333444444444444444322 223
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
..+..+++|++|++++|++++ ..|..+.++++|++|++++|++
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSC-EEGGGTTTCTTCCEEECTTSCC
T ss_pred hhhcccccCCEEECCCCcCCC-cCHHHccCCCcCCEEECCCCcC
Confidence 334444444444444444444 3344444444444444444443
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.51 E-value=8.3e-14 Score=123.94 Aligned_cols=108 Identities=25% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~ 178 (219)
+++++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---------NISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC---------EECSC--C
T ss_pred CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC---------ccCcc--c
Confidence 5666666666666643 3455666666666666666666555556666666666666666653 23333 5
Q ss_pred CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+++|++|++++|.+++..+|..++++++|++|++++|+++
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 5666666666666654233456666666666666666554
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=132.17 Aligned_cols=124 Identities=20% Similarity=0.183 Sum_probs=81.3
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCC-chhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEI-PPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~ 163 (219)
+.+++..|. +.++++|++|++++|...+. + |..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 34 NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 334444444 77777777777777755543 4 55677777777777777777766677777777777777777777542
Q ss_pred ccccCCccccHH--HhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 164 FLELGKTSLTNL--VQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 164 ~~~~~~~~~p~~--l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+|.. ++++++|++|++++|.+++...+..++++++|++|++++|+++
T Consensus 113 --------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 113 --------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp --------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred --------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 2222 5667777777777777766222356677777777777777664
No 66
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=4.7e-14 Score=119.14 Aligned_cols=132 Identities=20% Similarity=0.086 Sum_probs=105.6
Q ss_pred CcccccCCCCCCCc-cccccc-cccCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCc
Q 040237 75 KVASWKQGEAASKV-PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLV 151 (219)
Q Consensus 75 ~~~~W~~~~~c~~l-~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~ 151 (219)
+.|.+. .+.|.+. -..+|. +. ..++.|++++|++++. .+..+. .+++|++|++++|++++..|..+..+++|+
T Consensus 16 C~C~~~-~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 16 CLCASN-ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp CEEETT-EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEECCC-EEEeCCCCcCccCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 455665 5666331 233555 33 4589999999999964 445566 899999999999999966667899999999
Q ss_pred EEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 152 SLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 152 ~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+|++++|++++ ..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus 92 ~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 92 YLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp EEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCe
Confidence 99999999853 334568899999999999999987 567889999999999999999863
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=126.76 Aligned_cols=115 Identities=21% Similarity=0.220 Sum_probs=77.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCC-CCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFT-GQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|+++ +..|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--------~~~~ 487 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------QLSP 487 (570)
T ss_dssp TTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--------EECT
T ss_pred hhcCCCCCEEeCcCCccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc--------cCCh
Confidence 45555666666666655543 5555566666666666666665 345656666666666666666663 2346
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
..+..+++|++|++++|.+++ ..|..+.++++|++|++++|+++|
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhhcccCCCEEeCCCCcCCC-CCHHHhhcccCCcEEEecCCcccC
Confidence 677788888888888888877 556677888888888888888764
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.51 E-value=4.9e-14 Score=126.09 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=86.0
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
+.+++..|. +.++++|++|++++|.+... .|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus 43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-- 119 (606)
T 3t6q_A 43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-- 119 (606)
T ss_dssp CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC--
T ss_pred CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc--
Confidence 344544454 77888888888888888764 67778888888888888888887777778888888888888888753
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..++++++|++|++++|.+.+..+|..+ .+++|++|++++|+++
T Consensus 120 ------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 120 ------IDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIH 166 (606)
T ss_dssp ------GGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCC
T ss_pred ------CCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCccc
Confidence 2234456677777777777777652223333 3677777777777654
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=120.26 Aligned_cols=66 Identities=24% Similarity=0.256 Sum_probs=42.5
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCC
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYS 161 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~ 161 (219)
+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS
T ss_pred hccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc
Confidence 66667777777777776643 4455666777777777777776332333666777777777777664
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=4.6e-14 Score=114.54 Aligned_cols=114 Identities=23% Similarity=0.158 Sum_probs=72.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..+|.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~l~~ 143 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-------FKLPE 143 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC-------CCCCG
T ss_pred ccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce-------ecCch
Confidence 67777788888887777753 44567777777777777777775444456777777777777777642 13566
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCC----Eeecccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLR----FLSLQNCLV 217 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~----~L~ls~N~l 217 (219)
.++.+++|++|++++|.+++ ..+..+..+++|+ +|++++|++
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred hhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceeeecCCCcc
Confidence 67777777777777777655 3333343333333 444444443
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=1.6e-14 Score=119.54 Aligned_cols=125 Identities=18% Similarity=0.128 Sum_probs=74.0
Q ss_pred Cccccccc-c--ccCCCCCEeecCCCCCCCCCCchhhcCC-----CCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCC
Q 040237 87 KVPSTLAA-A--FSILSILSGNLAGNDFRYPEIPPEIANL-----SRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGN 158 (219)
Q Consensus 87 ~l~g~lp~-l--~~l~~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N 158 (219)
.+.+.+|. + ..+++|++|++++|.+++ +|..+..+ ++|++|++++|++.+..|..+..+++|++|++++|
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred cccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 34455555 3 556666666666666653 34444444 66666666666666554556666666666666666
Q ss_pred CCCCCccccCCccccHHH--hcCCCCCEEeccCccCCCC-CcC-hhhcCCCCCCEeecccccccC
Q 040237 159 GYSGGFLELGKTSLTNLV--QKLTNLETLNLGRVLIFNT-PIP-HNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 159 ~l~g~~~~~~~~~~p~~l--~~l~~L~~L~l~~N~l~~~-~~p-~~l~~l~~L~~L~ls~N~l~G 219 (219)
++.|. ..++..+ +.+++|++|++++|.+++. .++ ..+..+++|++|++++|++++
T Consensus 184 ~l~~~------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 184 PELGE------RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTCHH------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CcCcc------hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 65331 1133444 6777788888888877630 122 233567788888888887754
No 72
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=106.40 Aligned_cols=103 Identities=26% Similarity=0.315 Sum_probs=91.1
Q ss_pred CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCC
Q 040237 102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTN 181 (219)
Q Consensus 102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~ 181 (219)
+.+++++|.++ .+|..+. +++++|++++|.++ .+|..+..+++|+.|++++|.+++ ..+..+..+++
T Consensus 13 ~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~--------i~~~~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLK--VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST--------LSNQSFSNMTQ 79 (193)
T ss_dssp TEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC--------CCTTTTTTCTT
T ss_pred CEEEcCCCCCC--cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE--------eCHhHccCCCC
Confidence 67999999998 5887654 68999999999999 889999999999999999999954 34566889999
Q ss_pred CCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 182 LETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 182 L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
|++|++++|.+++ ..|..+..+++|++|++++|+++
T Consensus 80 L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 80 LLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCccCE-eCHHHhCCCCCCCEEECCCCCCC
Confidence 9999999999988 56678999999999999999986
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.49 E-value=1.6e-13 Score=114.08 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=73.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+. .+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++ ..+.
T Consensus 167 ~~~l~~L~~L~l~~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~ 234 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNIT--TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA--------VDNG 234 (330)
T ss_dssp GGGCTTCCEEECCSSCCC--SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE--------ECTT
T ss_pred ccCCCCcCEEECCCCccc--cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce--------eChh
Confidence 445555555555555554 2443332 566666666666665556677777778888888777743 3344
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+..+++|++|++++|.++. +|..+..+++|++|++++|++++
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCCC
T ss_pred hccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCCcCCc
Confidence 56777888888888888754 77777788888888888887753
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.49 E-value=2.3e-13 Score=113.15 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=65.7
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC----------
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG---------- 168 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~---------- 168 (219)
+.+++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++. +|...
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhcccccEEECC
Confidence 3556666666666542 33355666666666666666665445556666666666666665542 11100
Q ss_pred ----CccccHHHhcCCCCCEEeccCccCCCC-CcChhhcCCCCCCEeeccccccc
Q 040237 169 ----KTSLTNLVQKLTNLETLNLGRVLIFNT-PIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 169 ----~~~~p~~l~~l~~L~~L~l~~N~l~~~-~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
....+..+.++++|++|++++|.+... ..+..+.++++|++|++++|+++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 112234466677777777777766420 23455666666666666666554
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=119.38 Aligned_cols=111 Identities=22% Similarity=0.180 Sum_probs=70.1
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+.++++|++|++++|+++ .+| .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ..+.
T Consensus 181 ~~~l~~L~~L~L~~n~l~--~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~ 249 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLR--EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV--------IERN 249 (440)
T ss_dssp TTTCSSCCEEECTTSCCS--SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--------ECTT
T ss_pred hhcccccCeecCCCCcCc--ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE--------EChh
Confidence 445555555555555555 243 35556666666666666665555566666666666666666632 3345
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
.+..+++|++|++++|++++ ..+..+..+++|+.|++++|++
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEECCSSCE
T ss_pred hhcCCCCCCEEECCCCCCCc-cChhHhccccCCCEEEcCCCCc
Confidence 56677778888888887776 4445667777888888887765
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=121.32 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=94.9
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCC--CCCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCC
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRY--PEIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYS 161 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~--~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~ 161 (219)
+.+.+.+|. +..+++|++|++++|.+.+ . +|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSK-IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCcccc-chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 445665666 7788888888888888874 2 4556778888888888888887656654 566777777777777776
Q ss_pred CCccccC-------------CccccHHHhcCCCCCEEeccCccCCCCCcChh-hcCCCCCCEeecccccccC
Q 040237 162 GGFLELG-------------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 162 g~~~~~~-------------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~-l~~l~~L~~L~ls~N~l~G 219 (219)
+.+|..- ...+|..+..+++|++|++++|+++. +|.. +..+++|++|++++|++++
T Consensus 413 ~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 413 DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc--cCHHHhccCCcccEEECcCCCCcc
Confidence 5433110 12567777788888888888888865 6655 7788888889998888764
No 77
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.48 E-value=1.8e-13 Score=122.35 Aligned_cols=72 Identities=24% Similarity=0.152 Sum_probs=40.0
Q ss_pred cccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCC
Q 040237 89 PSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYS 161 (219)
Q Consensus 89 ~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~ 161 (219)
.+..|. +..+++|++|++++|.+.+. .|. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFTRLKVK-DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTCCEECC-TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred CcCCHHHhcCCccCCeEECCCCcCCCc-ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 333343 55566666666666665543 332 3555666666666666665555555555566666666666554
No 78
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=9.5e-14 Score=105.58 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=91.7
Q ss_pred cccccccCC-CCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCC
Q 040237 91 TLAAAFSIL-SILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGK 169 (219)
Q Consensus 91 ~lp~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~ 169 (219)
.++.+..+. +|++|++++|.+++ + +.+..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 33 ~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-------- 101 (176)
T 1a9n_A 33 VIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-------- 101 (176)
T ss_dssp SCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC--------
T ss_pred hhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC--------
Confidence 345555555 99999999999984 4 67889999999999999998443344589999999999999984
Q ss_pred ccccH--HHhcCCCCCEEeccCccCCCCCcChh----hcCCCCCCEeecccccc
Q 040237 170 TSLTN--LVQKLTNLETLNLGRVLIFNTPIPHN----LGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 170 ~~~p~--~l~~l~~L~~L~l~~N~l~~~~~p~~----l~~l~~L~~L~ls~N~l 217 (219)
.+|. .+..+++|++|++++|.++. +|.. +..+++|++||+++|.+
T Consensus 102 -~~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 102 -ELGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp -CGGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCH
T ss_pred -cchhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCH
Confidence 3454 68889999999999999965 6664 88999999999998864
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.47 E-value=2.6e-13 Score=123.00 Aligned_cols=125 Identities=21% Similarity=0.138 Sum_probs=105.0
Q ss_pred CCCCCCc-cccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC
Q 040237 82 GEAASKV-PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG 159 (219)
Q Consensus 82 ~~~c~~l-~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~ 159 (219)
.++|.+. -..+|. +. +++++|++++|.+++. .+..+..+++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 4566432 234565 43 6899999999999974 55679999999999999999998889999999999999999999
Q ss_pred CCCCccccCCccccH-HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 160 YSGGFLELGKTSLTN-LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 160 l~g~~~~~~~~~~p~-~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+++ +|. .++++++|++|++++|.+++ ..|..+.++++|++|++++|++++
T Consensus 85 l~~---------l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 85 LSQ---------LSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSS 135 (680)
T ss_dssp CCC---------CCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSC
T ss_pred cCc---------cChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcccc
Confidence 853 444 58899999999999999987 556789999999999999998864
No 80
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.7e-13 Score=104.24 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=91.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCC-CCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANL-SRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l-~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+..+.+|++|++++|.++ .+|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.++ .+|
T Consensus 15 ~~~~~~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~---------~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC---------RIG 80 (176)
T ss_dssp EECTTSCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC---------EEC
T ss_pred cCCcCCceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc---------ccC
Confidence 667889999999999998 3665 4444 4999999999999954 57889999999999999985 344
Q ss_pred -HHHhcCCCCCEEeccCccCCCCCcCh--hhcCCCCCCEeeccccccc
Q 040237 174 -NLVQKLTNLETLNLGRVLIFNTPIPH--NLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 174 -~~l~~l~~L~~L~l~~N~l~~~~~p~--~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..+++|++|++++|.+.. +|. .+..+++|++|++++|+++
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cchhhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCC
Confidence 445899999999999999955 776 8899999999999999875
No 81
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=120.19 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=85.8
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCC
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGG 163 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~ 163 (219)
+.+.+..|. +.++++|++|++++|.++. +|. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++
T Consensus 66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~- 142 (477)
T 2id5_A 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY- 142 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCS--CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-
T ss_pred CccCEeChhhhhCCccCCEEECCCCcCCc--cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-
Confidence 344555555 8889999999999998884 454 57888999999999999887777788888888888888888743
Q ss_pred ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
..+..+..+++|++|++++|.+++ ..+..+.++++|+.|++++|++
T Consensus 143 -------~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 143 -------ISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp -------ECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEEEESCCC
T ss_pred -------eChhhccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEeCCCCcC
Confidence 234445566666666666666655 3334455666666666666554
No 82
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.47 E-value=2.2e-13 Score=118.14 Aligned_cols=111 Identities=22% Similarity=0.155 Sum_probs=69.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+.++++|++|++++|+++. +| .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ..+.
T Consensus 192 ~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~ 260 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL--------IERN 260 (452)
T ss_dssp TTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE--------ECTT
T ss_pred ccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce--------ECHH
Confidence 4445555555555555552 33 35556666666666666665556666666666666666666632 3345
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
.+..+++|++|++++|++++ ..+..+..+++|++|++++|++
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCE
T ss_pred HhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCCc
Confidence 56677777777777777766 4445566777777777777765
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=116.73 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=64.3
Q ss_pred cCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCC--Cch--hhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 97 SILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQ--IPS--EILELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~--lp~--~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
.+++|++|++++|.+.+. .|..+..+++|++|++++|++.+. ++. .+..+++|++|++++|+++. ....
T Consensus 143 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------l~~~ 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET------PTGV 215 (310)
T ss_dssp BCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC------HHHH
T ss_pred hccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc------hHHH
Confidence 344444444444444432 333444444444444444444321 111 11344444444444444421 0111
Q ss_pred cH-HHhcCCCCCEEeccCccCCCCCcChhhcCC---CCCCEeeccccccc
Q 040237 173 TN-LVQKLTNLETLNLGRVLIFNTPIPHNLGNL---SSLRFLSLQNCLVQ 218 (219)
Q Consensus 173 p~-~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l---~~L~~L~ls~N~l~ 218 (219)
+. .++.+++|++|++++|.+++ ..|..+..+ ++|++|++++|+++
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC
Confidence 22 25788999999999999988 668777776 69999999999886
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.45 E-value=5.4e-13 Score=108.02 Aligned_cols=107 Identities=20% Similarity=0.304 Sum_probs=53.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch--------------------hhhcCCCCcEEE
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS--------------------EILELSNLVSLD 154 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~--------------------~~~~l~~L~~L~ 154 (219)
+..+++|++|++++|.+++ +++ +..+++|++|++++|++++ +|. .+..+++|+.|+
T Consensus 59 l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILS 134 (263)
T ss_dssp GGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEE
T ss_pred HhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEE
Confidence 4445555555555555552 333 4555555555555555542 222 344555555555
Q ss_pred ccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 155 LSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 155 Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+++|++++ ++ .+..+++|++|++++|.+++ + ..+..+++|++|++++|+++
T Consensus 135 Ls~N~i~~---------~~-~l~~l~~L~~L~L~~N~i~~--~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 135 IRNNKLKS---------IV-MLGFLSKLEVLDLHGNEITN--T-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CTTSCCCB---------CG-GGGGCTTCCEEECTTSCCCB--C-TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCCcCCC---------Ch-HHccCCCCCEEECCCCcCcc--h-HHhccCCCCCEEeCCCCccc
Confidence 55555432 22 34555555555555555544 2 44555555666666555543
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.45 E-value=1.4e-13 Score=120.81 Aligned_cols=118 Identities=19% Similarity=0.122 Sum_probs=80.6
Q ss_pred Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
.+++..|. +..+++|++|++++|.+.+. .|..+. .+++|++|++++|.+++. |. ...+++|+.|++++|.++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~--- 204 (487)
T 3oja_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA--- 204 (487)
T ss_dssp CCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC---
T ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCC---
Confidence 34444444 66666677777777766654 455554 566777777777766633 32 234667777777777764
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++
T Consensus 205 ------~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 205 ------FMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ------EECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred ------CCCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence 355557788888888888888866 7877888888888888888775
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=127.08 Aligned_cols=122 Identities=23% Similarity=0.252 Sum_probs=94.4
Q ss_pred ccccccc--cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchh--hhcCCCCcEEEccCCCCCCC
Q 040237 88 VPSTLAA--AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE--ILELSNLVSLDLSGNGYSGG 163 (219)
Q Consensus 88 l~g~lp~--l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~--~~~l~~L~~L~Ls~N~l~g~ 163 (219)
..+.+++ +.++++|++|++++|.+.+. .|..+.++++|++|++++|.+++.+|.. +..+++|++|++++|.+++.
T Consensus 60 ~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp CCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred CccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 4566644 88999999999999999875 6888999999999999999998777665 88899999999999988642
Q ss_pred ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCC--CCCCEeeccccccc
Q 040237 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNL--SSLRFLSLQNCLVQ 218 (219)
Q Consensus 164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l--~~L~~L~ls~N~l~ 218 (219)
..+..++++++|++|++++|.+++ ..|..+..+ ++|+.|++++|.++
T Consensus 139 -------~~~~~~~~L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 139 -------YLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp -------CCCGGGGTCSSCCEEEEESSCCCC-CCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred -------ccchhHhhCCCCCEEECCCCcCCe-eCHHHcccccCCccceEECCCCccc
Confidence 234567888888888888888877 566666555 55666666665543
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.2e-12 Score=108.16 Aligned_cols=107 Identities=27% Similarity=0.387 Sum_probs=72.7
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ +|. +..+++|++|++++|.+++ ++.
T Consensus 81 ~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~---------~~~ 146 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN---------ISP 146 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC---------CGG
T ss_pred HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc---------Ccc
Confidence 5666666777777766663 33 46666777777777777663 443 6667777777777776643 222
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
++.+++|++|++++|.+++ ++. +..+++|++|++++|++++
T Consensus 147 -l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 147 -LAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp -GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC
T ss_pred -ccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCccCc
Confidence 6777888888888888866 444 7788888888888887753
No 88
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=115.94 Aligned_cols=122 Identities=18% Similarity=0.123 Sum_probs=92.1
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCch--hhhcCCCCcEEEccCCCCC
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPS--EILELSNLVSLDLSGNGYS 161 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~--~~~~l~~L~~L~Ls~N~l~ 161 (219)
+.+++..+. +..+++|++|++++|.++. +|. .+..+++|++|++++|.++ .+|. .+..+++|++|++++|...
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccc
Confidence 445555555 8899999999999999985 555 4899999999999999998 5665 6888999999999999532
Q ss_pred CCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 162 GGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 162 g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+ ...+..++.+++|++|++++|.+++ ..|..+..+++|++|++++|+++
T Consensus 163 ~-------~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 163 T-------KIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp C-------EECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEEEEEECSCST
T ss_pred c-------ccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhccccCCeecCCCCccc
Confidence 1 1224556777777777777777766 55667777777777777766653
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.6e-12 Score=107.45 Aligned_cols=108 Identities=29% Similarity=0.347 Sum_probs=65.4
Q ss_pred ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237 92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS 171 (219)
Q Consensus 92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~ 171 (219)
++.+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++
T Consensus 100 ~~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~--------- 165 (308)
T 1h6u_A 100 VSAIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD--------- 165 (308)
T ss_dssp CGGGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC---------
T ss_pred chhhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC---------
Confidence 3447777788888888888774 443 7777777777777777773 333 6677777777777777653
Q ss_pred ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
++. +..+++|++|++++|.+++ ++. +..+++|++|++++|++
T Consensus 166 ~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 166 LTP-LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCC
T ss_pred Chh-hcCCCCCCEEECCCCccCc--Chh-hcCCCCCCEEEccCCcc
Confidence 122 4445555555555555543 222 44444455555554444
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=5.2e-13 Score=119.37 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=96.6
Q ss_pred CCccccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc
Q 040237 86 SKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL 165 (219)
Q Consensus 86 ~~l~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~ 165 (219)
+.+++ +|.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .++.+++|+.|++++|.+++
T Consensus 451 n~l~~-lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~--- 522 (567)
T 1dce_A 451 KDLTV-LCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ--- 522 (567)
T ss_dssp SCCSS-CCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS---
T ss_pred CCCCC-CcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC---
Confidence 34554 666899999999999999999 499999999999999999999995 78 89999999999999999964
Q ss_pred ccCCccc-cHHHhcCCCCCEEeccCccCCCCCcCh---hhcCCCCCCEeec
Q 040237 166 ELGKTSL-TNLVQKLTNLETLNLGRVLIFNTPIPH---NLGNLSSLRFLSL 212 (219)
Q Consensus 166 ~~~~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~p~---~l~~l~~L~~L~l 212 (219)
.. |..++.+++|+.|++++|.+++ ..|. .+..+++|+.|++
T Consensus 523 -----~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 523 -----SAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----SSTTGGGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCTTCSEEEC
T ss_pred -----CCCcHHHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCcccCccCC
Confidence 33 7889999999999999999987 4332 2345899999874
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=1.6e-12 Score=106.60 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=70.3
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+.. +| .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++ + .
T Consensus 86 l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~---------~-~ 150 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD---------I-T 150 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC---------C-G
T ss_pred cccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc---------c-h
Confidence 5566666666666666652 33 36666666666666666663 3 345666667777777666642 2 4
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+..+++|++|++++|.+++ ++. +..+++|++|++++|+++
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC
T ss_pred hhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCC
Confidence 56777888888888888866 333 777888888888888775
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.43 E-value=3.7e-13 Score=119.71 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=93.4
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCCC
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYSG 162 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~g 162 (219)
+.+.+.+|. +..+++|++|++++|.+++. .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 455666666 78888888888888888742 02355778888888888888888656653 5667777777777777765
Q ss_pred CccccC-------------CccccHHHhcCCCCCEEeccCccCCCCCcChh-hcCCCCCCEeecccccccC
Q 040237 163 GFLELG-------------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHN-LGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 163 ~~~~~~-------------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~-l~~l~~L~~L~ls~N~l~G 219 (219)
.+|..- ...+|..+..+++|++|++++|+++. +|.. +..+++|++|++++|++++
T Consensus 443 ~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 443 SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp GGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECCSCCBCC
T ss_pred chhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEecCCCcCC
Confidence 433110 12466666677888888888888865 6655 7788888888888888764
No 93
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=1.1e-12 Score=99.51 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=88.6
Q ss_pred CCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCC
Q 040237 101 ILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT 180 (219)
Q Consensus 101 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~ 180 (219)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++ ..+..+..++
T Consensus 9 ~~~l~~~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~ 76 (177)
T 2o6r_A 9 GTEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--------LPDGVFDKLT 76 (177)
T ss_dssp TTEEECCSSCCS--SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCT
T ss_pred CCEEEecCCCCc--cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--------eChhHccCCC
Confidence 578999999988 477654 3799999999999996555567899999999999999853 2334568899
Q ss_pred CCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+|++|++++|.+++ ..+..+..+++|++|++++|++++
T Consensus 77 ~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 77 KLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCEEECCCCCccc-cCHHHhhCCcccCEEECcCCcceE
Confidence 99999999999988 555668899999999999999864
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=2.6e-13 Score=112.46 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=75.3
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhh-cCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEI-ANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ +|. ...+++|++|++++|.++ .+|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~---------~l~ 207 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA---------FMG 207 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCC---------EEC
T ss_pred hhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCC---------cch
Confidence 55566666666666666643 33333 356666666666666652 232 224666777777777663 355
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..+++|++|++++|.+++ +|..+..+++|++|++++|+++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred hhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence 668888899999999998865 7888888899999999999875
No 95
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=8.1e-13 Score=118.56 Aligned_cols=119 Identities=19% Similarity=0.194 Sum_probs=93.4
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCC
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGG 163 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~ 163 (219)
+.+.+..|. +..+++|++|++++|.+.+. .|..+..+++|++|++++|.++ .+|. .++.+++|++|++++|.+++
T Consensus 85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~- 161 (597)
T 3oja_B 85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER- 161 (597)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB-
T ss_pred CCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC-
Confidence 445555554 89999999999999999975 6667899999999999999999 5555 46899999999999999854
Q ss_pred ccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 164 FLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..|..++.+++|++|++++|.+++ ++ +..+++|++|++++|.++
T Consensus 162 -------~~~~~~~~l~~L~~L~L~~N~l~~--~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 162 -------IEDDTFQATTSLQNLQLSSNRLTH--VD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp -------CCTTTTTTCTTCCEEECTTSCCSB--CC--GGGCTTCSEEECCSSCCS
T ss_pred -------CChhhhhcCCcCcEEECcCCCCCC--cC--hhhhhhhhhhhcccCccc
Confidence 455678889999999999999976 33 344556666555555543
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.42 E-value=6.1e-13 Score=110.76 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=80.8
Q ss_pred CcccccCCCCCCCc-cccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237 75 KVASWKQGEAASKV-PSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152 (219)
Q Consensus 75 ~~~~W~~~~~c~~l-~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~ 152 (219)
+.|.|. ...|.+. -..+|. + .+++++|++++|.+... .|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 31 c~c~l~-~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 31 CHCHLR-VVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp CEEETT-EEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred CcccCC-EEECCCCCccccCCCC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 445666 4555321 224454 3 25788888888888753 4557788888888888888888666777888888888
Q ss_pred EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
|++++|.++. +|..+. ++|++|++++|.+.+ ..+..+.++++|++|++++|++
T Consensus 107 L~L~~n~l~~---------l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 107 LYISKNHLVE---------IPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp EECCSSCCCS---------CCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCC
T ss_pred EECCCCcCCc---------cCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCcc
Confidence 8888887752 222222 456666666666654 3334455666666666666654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=2.1e-12 Score=105.95 Aligned_cols=108 Identities=24% Similarity=0.274 Sum_probs=66.5
Q ss_pred cccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 93 AAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 93 p~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
+.+..+++|++|++++|.+.. + +.+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++ +
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~---------~ 171 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD---------I 171 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC---------C
T ss_pred hhhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc---------c
Confidence 336666666677776666663 3 3466666666777766666632 456666667777776666643 2
Q ss_pred cHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 173 TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 173 p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+. +..+++|++|++++|.+++ +|. +..+++|+.|++++|+++
T Consensus 172 ~~-l~~l~~L~~L~L~~N~i~~--l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 VP-LAGLTKLQNLYLSKNHISD--LRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG-GTTCTTCCEEECCSSCCCB--CGG-GTTCTTCSEEEEEEEEEE
T ss_pred hh-hcCCCccCEEECCCCcCCC--Chh-hccCCCCCEEECcCCccc
Confidence 22 5666666677776666654 332 666666666666666653
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=1.8e-13 Score=108.77 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=57.9
Q ss_pred cccCCCCCEeecCCCC-CCCCCCchhhcCCCCCCEEEccc-CCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 95 AFSILSILSGNLAGND-FRYPEIPPEIANLSRLSYLNLSD-SFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
+..+++|++|++++|. ++.. .+..+..+++|++|++++ |.+++..+..+..+++|++|++++|.+++ +
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~---------l 120 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM---------F 120 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS---------C
T ss_pred ccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc---------c
Confidence 5556666666666665 5431 223456666666666665 66663333455566666666666666543 2
Q ss_pred cHHHhcCCCCC---EEeccCc-cCCCCCcChhhcCCCCCC-Eeecccccc
Q 040237 173 TNLVQKLTNLE---TLNLGRV-LIFNTPIPHNLGNLSSLR-FLSLQNCLV 217 (219)
Q Consensus 173 p~~l~~l~~L~---~L~l~~N-~l~~~~~p~~l~~l~~L~-~L~ls~N~l 217 (219)
|. +..+++|+ +|++++| .+++ ..+..+..+++|+ +|++++|++
T Consensus 121 p~-~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 121 PD-LTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp CC-CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCSCCC
T ss_pred cc-cccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCCCCC
Confidence 22 33444444 5555555 4433 2223344455555 555555544
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=2.2e-13 Score=108.26 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=97.0
Q ss_pred CCCCccccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCC-CCCCCchhhhcCCCCcEEEccC-CCCC
Q 040237 84 AASKVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSF-FTGQIPSEILELSNLVSLDLSG-NGYS 161 (219)
Q Consensus 84 ~c~~l~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~g~lp~~~~~l~~L~~L~Ls~-N~l~ 161 (219)
.|.+ -..+|. -..++++|++++|++++. .+..+..+++|++|++++|+ ++...+..+..+++|++|++++ |.++
T Consensus 19 ~c~~-l~~ip~--~~~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 19 TCKD-IQRIPS--LPPSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp EECS-CSSCCC--CCTTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred EccC-ccccCC--CCCcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence 4876 344565 334899999999999953 34478999999999999997 8744445789999999999998 9884
Q ss_pred CCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCC---Eeecccc-ccc
Q 040237 162 GGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLR---FLSLQNC-LVQ 218 (219)
Q Consensus 162 g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~---~L~ls~N-~l~ 218 (219)
+ ..+..+..+++|++|++++|.+++ +|. +..+++|+ +|++++| +++
T Consensus 95 ~--------i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 95 Y--------IDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp E--------ECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred E--------cCHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchh
Confidence 2 223567889999999999999976 776 88888888 9999999 764
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=4e-14 Score=129.99 Aligned_cols=99 Identities=27% Similarity=0.290 Sum_probs=90.3
Q ss_pred cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCC
Q 040237 91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGK 169 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~ 169 (219)
.+|+ +..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-------- 306 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-------- 306 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC--------
T ss_pred CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC--------
Confidence 6776 779999999999999999 49999999999999999999999 89999999999999999999984
Q ss_pred ccccHHHhcCCCCCEEeccCccCCCCCcChhhc
Q 040237 170 TSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLG 202 (219)
Q Consensus 170 ~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~ 202 (219)
.+|..++++++|++|+|++|.+++ .+|..+.
T Consensus 307 -~lp~~~~~l~~L~~L~L~~N~l~~-~~p~~~~ 337 (727)
T 4b8c_D 307 -TLPWEFGNLCNLQFLGVEGNPLEK-QFLKILT 337 (727)
T ss_dssp -CCCSSTTSCTTCCCEECTTSCCCS-HHHHHHH
T ss_pred -ccChhhhcCCCccEEeCCCCccCC-CChHHHh
Confidence 577789999999999999999998 7776654
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=112.37 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=76.0
Q ss_pred Cccccccc-cccCCCCCEeecCCCCCCCC-CCc--hhhcCCCCCCEEEcccCCCCCCCch----hhhcCCCCcEEEccCC
Q 040237 87 KVPSTLAA-AFSILSILSGNLAGNDFRYP-EIP--PEIANLSRLSYLNLSDSFFTGQIPS----EILELSNLVSLDLSGN 158 (219)
Q Consensus 87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~-~~p--~~l~~l~~L~~L~Ls~n~l~g~lp~----~~~~l~~L~~L~Ls~N 158 (219)
.+.+..+. +..+++|++|++++|++.+. .++ ..+..+++|++|++++|+++ .+|. .+..+++|++|++++|
T Consensus 156 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 156 HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTS
T ss_pred CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCC
Confidence 34444444 67777788888887776531 011 22356777777888887776 3333 2466777888888888
Q ss_pred CCCCCccccCCccccHHHhcC---CCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 159 GYSGGFLELGKTSLTNLVQKL---TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 159 ~l~g~~~~~~~~~~p~~l~~l---~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+++ ..|..+..+ ++|++|++++|+++. +|..+. ++|++|++++|+++|
T Consensus 235 ~l~~--------~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 235 SLRA--------TVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp CCCC--------CCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCCS
T ss_pred CCCc--------cchhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCCC
Confidence 7754 234444444 577788888777754 666553 677778888777764
No 102
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=5.2e-15 Score=114.72 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=95.3
Q ss_pred ccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCc
Q 040237 92 LAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKT 170 (219)
Q Consensus 92 lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~ 170 (219)
+|. +..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-------- 107 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-------- 107 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC--------
T ss_pred hhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc--------
Confidence 344 7889999999999999984 67 8889999999999999998 788888888999999999999853
Q ss_pred cccHHHhcCCCCCEEeccCccCCCCCcC--hhhcCCCCCCEeeccccccc
Q 040237 171 SLTNLVQKLTNLETLNLGRVLIFNTPIP--HNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 171 ~~p~~l~~l~~L~~L~l~~N~l~~~~~p--~~l~~l~~L~~L~ls~N~l~ 218 (219)
+| .+..+++|++|++++|.+++ ++ ..+..+++|++|++++|+++
T Consensus 108 -l~-~~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 108 -LS-GIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp -HH-HHHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred -CC-ccccCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEEEecCCccc
Confidence 44 57888999999999999976 44 47888999999999999874
No 103
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.41 E-value=1e-12 Score=109.98 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=62.1
Q ss_pred cccccCCCCCCCc--cccccccccCCCCCEeecCC-CCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcE
Q 040237 76 VASWKQGEAASKV--PSTLAAAFSILSILSGNLAG-NDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVS 152 (219)
Q Consensus 76 ~~~W~~~~~c~~l--~g~lp~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~ 152 (219)
.|+|. .++|.+. -..+|.+..+++|++|+|++ |.+.+. .+..+..+++|++|+|++|++++..|..|..+++|+.
T Consensus 7 ~C~~~-~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 7 PHGSS-GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CSSSS-CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred cccCC-EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 45665 4555321 12244455666677777764 666643 3345666777777777777776655556666677777
Q ss_pred EEccCCCCCCCccccCCccccH-HHhcCCCCCEEeccCccCCC
Q 040237 153 LDLSGNGYSGGFLELGKTSLTN-LVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 153 L~Ls~N~l~g~~~~~~~~~~p~-~l~~l~~L~~L~l~~N~l~~ 194 (219)
|+|++|++++ +|. .+..++ |+.|++.+|.+..
T Consensus 85 L~l~~N~l~~---------~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNALES---------LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCSC---------CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EeCCCCccce---------eCHHHcccCC-ceEEEeeCCCccC
Confidence 7777776643 222 223333 6667776666643
No 104
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.40 E-value=1.8e-12 Score=110.15 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=89.3
Q ss_pred Cccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchh-hhcCCCCcEEEccCCCCCCCc
Q 040237 87 KVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSE-ILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 87 ~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~-~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
.+.+..+. +..+++|++|++++|.+.+. .|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~-- 155 (390)
T 3o6n_A 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER-- 155 (390)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB--
T ss_pred cccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc--
Confidence 34444444 88999999999999999864 5667899999999999999998 66655 5889999999999999853
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
..+..++.+++|++|++++|.+++ ++ +..+++|++|++++|.+
T Consensus 156 ------~~~~~~~~l~~L~~L~l~~n~l~~--~~--~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 156 ------IEDDTFQATTSLQNLQLSSNRLTH--VD--LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ------CCTTTTSSCTTCCEEECCSSCCSB--CC--GGGCTTCSEEECCSSCC
T ss_pred ------cChhhccCCCCCCEEECCCCcCCc--cc--cccccccceeecccccc
Confidence 345567888999999999999876 32 34455555555555544
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=1.1e-12 Score=106.20 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=91.4
Q ss_pred ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC---
Q 040237 92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG--- 168 (219)
Q Consensus 92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~--- 168 (219)
++.+..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+|. +..+++|++|++++|++++. +...
T Consensus 34 ~~~~~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~l-~~~~~~~ 107 (263)
T 1xeu_A 34 LVSQKELSGVQNFNGDNSNIQ--SLA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNL-NGIPSAC 107 (263)
T ss_dssp EECHHHHTTCSEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSCC-TTCCCSS
T ss_pred ccchhhcCcCcEEECcCCCcc--cch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCCc-CccccCc
Confidence 335677899999999999998 466 7899999999999999999 4555 89999999999999998762 2111
Q ss_pred ----------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 169 ----------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 169 ----------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
...+ +.+..+++|++|++++|++++ ++ .+..+++|++|++++|++++
T Consensus 108 L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 108 LSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCB
T ss_pred ccEEEccCCccCCC-hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcc
Confidence 0112 246777888888888888866 44 57778888888888887753
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.40 E-value=3.4e-12 Score=106.50 Aligned_cols=108 Identities=25% Similarity=0.303 Sum_probs=59.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+.. + +.+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ ...+.
T Consensus 239 ~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~--------~~~~~ 305 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLG--------NEDME 305 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCC--------GGGHH
T ss_pred hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCC--------CcChh
Confidence 3444445555555544442 2 234455555555555555542 22 3455555555555555552 24456
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.++.+++|++|++++|.+++ ..| +..+++|++|++++|+|+
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITD-IRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCC-CGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCcccc-ccC--hhhhhccceeehhhhccc
Confidence 67777777777777777766 333 667777777777777764
No 107
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=1.4e-12 Score=108.53 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=86.0
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
+.+.+..+. +..+++|++|++++|.+++. .|..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+++
T Consensus 64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-- 137 (332)
T 2ft3_A 64 NDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-- 137 (332)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC--
T ss_pred CcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc--
Confidence 344444454 88899999999999998864 6788899999999999999988 6776654 788888998888753
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCC-CCcChhhcCCCCCCEeeccccccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFN-TPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~-~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..+..+++|++|++++|.++. ...|..+..+ +|++|++++|+++
T Consensus 138 ------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 138 ------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp ------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred ------cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 223456778888888888887742 0344555555 5666666655543
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=3.8e-13 Score=118.08 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=79.0
Q ss_pred CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhh-cCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237 98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL-ELSNLVSLDLSGNGYSGGFLELGKTSLTNLV 176 (219)
Q Consensus 98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~-~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l 176 (219)
+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++ +|. .
T Consensus 119 l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---------~~~-~ 187 (487)
T 3oja_A 119 GQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------VKG-Q 187 (487)
T ss_dssp CSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------EEC-C
T ss_pred cCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc---------ccc-c
Confidence 35566666666666653 455677777777777777777766666665 67777888887777753 222 2
Q ss_pred hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
..+++|++|++++|.+++ +|..+..+++|+.|++++|++++
T Consensus 188 ~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE
T ss_pred ccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcc
Confidence 357888999999998876 66668888999999999998763
No 109
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.3e-12 Score=97.58 Aligned_cols=105 Identities=25% Similarity=0.250 Sum_probs=90.6
Q ss_pred CCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCC
Q 040237 101 ILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLT 180 (219)
Q Consensus 101 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~ 180 (219)
.+++++++|.++ .+|..+. +++++|++++|.+++..|..+..+++|++|++++|++++ ..+..+..++
T Consensus 11 ~~~l~~s~n~l~--~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGKSLA--SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--------LPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--------CCTTTTTTCT
T ss_pred CCEEEeCCCCcC--ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--------cChhhccCCC
Confidence 467999999998 4787664 899999999999997778889999999999999999964 2334568899
Q ss_pred CCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 181 NLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 181 ~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+|++|++++|++++ ..+..+..+++|++|++++|+++
T Consensus 79 ~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 79 QLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEECCCCccCE-eCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999999999987 44557999999999999999886
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.36 E-value=4.9e-12 Score=105.57 Aligned_cols=109 Identities=23% Similarity=0.364 Sum_probs=85.0
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+.. ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ + +
T Consensus 217 ~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~---------~-~ 281 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITD--LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD---------I-S 281 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC---------C-G
T ss_pred hhcCCcCCEEEccCCccCC--Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC---------C-h
Confidence 5667777778887777774 444 7777888888888887773 3 357777888888888887743 2 3
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSCCC
T ss_pred hhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCcccc
Confidence 47788999999999999987 677889999999999999998864
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=6.3e-12 Score=113.12 Aligned_cols=107 Identities=24% Similarity=0.342 Sum_probs=76.4
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|+.|+|++|.+.+ +| .+..+++|++|++++|.+.+ + +.+..+++|+.|++++|.+++ + .
T Consensus 83 l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~---------l-~ 147 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD---------I-T 147 (605)
T ss_dssp GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC---------C-G
T ss_pred hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCC---------c-h
Confidence 6666777777777777663 33 56677777777777777763 3 346677777777777777643 2 4
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+..+++|+.|+|++|.+.+ ..| +..+++|++|++++|+|++
T Consensus 148 ~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 148 VLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCB
T ss_pred hhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCC
Confidence 57788888888888888877 434 7888888888888888763
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=7.5e-12 Score=112.62 Aligned_cols=109 Identities=25% Similarity=0.280 Sum_probs=77.3
Q ss_pred ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237 92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS 171 (219)
Q Consensus 92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~ 171 (219)
++.+..+++|++|++++|.+.. + +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++ .
T Consensus 102 l~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~--------~ 168 (605)
T 1m9s_A 102 LSSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--------I 168 (605)
T ss_dssp CTTSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC--------C
T ss_pred ChhhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC--------c
Confidence 3446777778888888887773 3 3477777888888888877743 467777788888888887753 2
Q ss_pred ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.| +..+++|+.|+|++|.+++ +| .+..+++|+.|++++|+++
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEECCSEEEE
T ss_pred hh--hccCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEccCCcCc
Confidence 22 6777778888888887765 33 4777778888888777764
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=2.2e-13 Score=113.15 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=77.7
Q ss_pred ccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccC-CCCCC-CchhhhcCCCCcEEEccCC-CCCCCcccc
Q 040237 92 LAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDS-FFTGQ-IPSEILELSNLVSLDLSGN-GYSGGFLEL 167 (219)
Q Consensus 92 lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~~L~~L~Ls~N-~l~g~~~~~ 167 (219)
++. +..+++|++|++++|.+.+. .+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~----- 183 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE----- 183 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-----
T ss_pred HHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-----
Confidence 444 66677777777777766653 5666667777777777777 55542 5555666777777777777 6632
Q ss_pred CCccccHHHhcCC-CCCEEeccCc--cCCCCCcChhhcCCCCCCEeeccccc
Q 040237 168 GKTSLTNLVQKLT-NLETLNLGRV--LIFNTPIPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 168 ~~~~~p~~l~~l~-~L~~L~l~~N--~l~~~~~p~~l~~l~~L~~L~ls~N~ 216 (219)
..++..+..++ +|++|++++| .+++..+|..+.++++|++|++++|.
T Consensus 184 --~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 184 --KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp --HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred --HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 12566677777 7888888777 45421466666777788888887776
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=4.8e-12 Score=110.22 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=83.3
Q ss_pred CccccccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccc
Q 040237 87 KVPSTLAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLE 166 (219)
Q Consensus 87 ~l~g~lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~ 166 (219)
.+++ +|.+..+++|++|++++|.+++ +| +..+++|++|++++|.+++ +| ++.+++|++|++++|.+++
T Consensus 53 ~l~~-~~~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~---- 120 (457)
T 3bz5_A 53 SITD-MTGIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK---- 120 (457)
T ss_dssp CCCC-CTTGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC----
T ss_pred Cccc-ChhhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe----
Confidence 3444 3557788888888888888885 44 7788888888888888885 44 7788888888888888753
Q ss_pred cCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccc
Q 040237 167 LGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 167 ~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~ 216 (219)
++ ++.+++|++|++++|.+++ ++ ++++++|++|++++|+
T Consensus 121 -----l~--~~~l~~L~~L~l~~N~l~~--l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 121 -----LD--VSQNPLLTYLNCARNTLTE--ID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp -----CC--CTTCTTCCEEECTTSCCSC--CC--CTTCTTCCEEECTTCS
T ss_pred -----ec--CCCCCcCCEEECCCCccce--ec--cccCCcCCEEECCCCC
Confidence 33 6778888889998888877 43 7788888888888884
No 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.32 E-value=1.5e-12 Score=107.92 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=78.1
Q ss_pred CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhh-hcCCCCcEEEccCCCCCCCccccCCccccHHH
Q 040237 98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI-LELSNLVSLDLSGNGYSGGFLELGKTSLTNLV 176 (219)
Q Consensus 98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~-~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l 176 (219)
+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++ ++. .
T Consensus 119 ~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~-~ 187 (317)
T 3o53_A 119 GQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------VKG-Q 187 (317)
T ss_dssp CSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------EEC-C
T ss_pred cCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc---------ccc-c
Confidence 45566667777776643 34466777788888888888776555555 367788888888887743 222 2
Q ss_pred hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 177 QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 177 ~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+++|++|++++|.+++ +|..+..+++|++|++++|+++
T Consensus 188 ~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC
T ss_pred cccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCccc
Confidence 347889999999999866 6777888999999999999875
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=1.4e-11 Score=107.23 Aligned_cols=115 Identities=25% Similarity=0.284 Sum_probs=63.1
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC------
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG------ 168 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~------ 168 (219)
+..+++|++|++++|.+.+ ++. +..+++|++|++++|++.+. +. +..+++|+.|++++|.+++..+-..
T Consensus 261 ~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 335 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISN--ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 335 (466)
T ss_dssp GTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCE
T ss_pred hhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchhhccCccCCE
Confidence 5566666666666666663 333 55666666666666666632 22 5556666666666666544211000
Q ss_pred -------CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 169 -------KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 169 -------~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
...+ ..+..+++|++|++++|.+++ ..| +..+++|++|++++|+++
T Consensus 336 L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 336 LFFYNNKVSDV-SSLANLTNINWLSAGHNQISD-LTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp EECCSSCCCCC-GGGTTCTTCCEEECCSSCCCB-CGG--GTTCTTCCEEECCCEEEE
T ss_pred eECCCCccCCc-hhhccCCCCCEEeCCCCccCc-cch--hhcCCCCCEEeccCCccc
Confidence 0011 235556666666666666655 333 556666666666666554
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=1e-12 Score=109.21 Aligned_cols=122 Identities=27% Similarity=0.376 Sum_probs=94.6
Q ss_pred Cccccccc-cccCCCCCEeecCCC-CCCCCCCchhhcCCCCCCEEEcccC-CCCCC-CchhhhcCC-CCcEEEccCC--C
Q 040237 87 KVPSTLAA-AFSILSILSGNLAGN-DFRYPEIPPEIANLSRLSYLNLSDS-FFTGQ-IPSEILELS-NLVSLDLSGN--G 159 (219)
Q Consensus 87 ~l~g~lp~-l~~l~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~-~L~~L~Ls~N--~ 159 (219)
.+++..+. +..+++|++|++++| .+++..++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 34555565 788999999999999 6764225667888999999999999 88754 577788888 9999999998 4
Q ss_pred CCCCccccCCccccHHHhcCCCCCEEeccCcc-CCCCCcChhhcCCCCCCEeeccccc
Q 040237 160 YSGGFLELGKTSLTNLVQKLTNLETLNLGRVL-IFNTPIPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 160 l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~-l~~~~~p~~l~~l~~L~~L~ls~N~ 216 (219)
++ ...++..+.++++|++|++++|. +++ ..+..+.++++|++|++++|.
T Consensus 209 ~~-------~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 209 LQ-------KSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SC-------HHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCT
T ss_pred CC-------HHHHHHHHhhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCCC
Confidence 43 23567777888888888888888 666 566778888888888888873
No 118
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.4e-11 Score=93.61 Aligned_cols=101 Identities=17% Similarity=0.082 Sum_probs=82.2
Q ss_pred CCCCCC-ccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC
Q 040237 82 GEAASK-VPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG 159 (219)
Q Consensus 82 ~~~c~~-l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~ 159 (219)
..+|.+ .-+.+|. +. ++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345532 3456776 53 8999999999999975 67789999999999999999995444456899999999999999
Q ss_pred CCCCccccCCcccc-HHHhcCCCCCEEeccCccCCC
Q 040237 160 YSGGFLELGKTSLT-NLVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 160 l~g~~~~~~~~~~p-~~l~~l~~L~~L~l~~N~l~~ 194 (219)
+++ +| ..+..+++|++|++++|.+..
T Consensus 93 l~~---------l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKS---------IPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCC---------CCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cce---------eCHHHhccccCCCEEEeCCCCccc
Confidence 853 34 348889999999999999976
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=3.7e-11 Score=104.53 Aligned_cols=109 Identities=25% Similarity=0.325 Sum_probs=78.7
Q ss_pred ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcc
Q 040237 92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTS 171 (219)
Q Consensus 92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~ 171 (219)
++.+..+++|++|++++|.+.+ +++ +..+++|++|++++|.+++ +|. +..+++|+.|++++|++++..
T Consensus 236 ~~~l~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~------- 303 (466)
T 1o6v_A 236 IGTLASLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDIS------- 303 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCG-------
T ss_pred chhhhcCCCCCEEECCCCcccc--chh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCch-------
Confidence 4458889999999999999985 444 8999999999999999995 444 889999999999999987531
Q ss_pred ccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
. +..+++|++|++++|.+++ ..| +..+++|++|++++|+++
T Consensus 304 --~-~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 304 --P-ISNLKNLTYLTLYFNNISD-ISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp --G-GGGCTTCSEEECCSSCCSC-CGG--GGGCTTCCEEECCSSCCC
T ss_pred --h-hcCCCCCCEEECcCCcCCC-chh--hccCccCCEeECCCCccC
Confidence 1 4555566666666666555 222 444455555555555443
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=2.7e-12 Score=108.22 Aligned_cols=114 Identities=22% Similarity=0.333 Sum_probs=48.5
Q ss_pred CCCEeecCCCCCCCCCCchhhcCC-----CCCCEEEcccCCCCCCCchhhhc----C-CCCcEEEccCCCCCCCccccCC
Q 040237 100 SILSGNLAGNDFRYPEIPPEIANL-----SRLSYLNLSDSFFTGQIPSEILE----L-SNLVSLDLSGNGYSGGFLELGK 169 (219)
Q Consensus 100 ~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~g~lp~~~~~----l-~~L~~L~Ls~N~l~g~~~~~~~ 169 (219)
+|++|++++|.+... .+..+..+ ++|++|++++|.+++..+..+.. + ++|++|++++|.+++.. .
T Consensus 52 ~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~----~ 126 (362)
T 3goz_A 52 SVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS----S 126 (362)
T ss_dssp TCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC----H
T ss_pred ceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH----H
Confidence 455555555544432 33333332 44555555555544333332222 2 44555555555442210 0
Q ss_pred ccccHHHhcC-CCCCEEeccCccCCCC---CcChhhcCCC-CCCEeeccccccc
Q 040237 170 TSLTNLVQKL-TNLETLNLGRVLIFNT---PIPHNLGNLS-SLRFLSLQNCLVQ 218 (219)
Q Consensus 170 ~~~p~~l~~l-~~L~~L~l~~N~l~~~---~~p~~l~~l~-~L~~L~ls~N~l~ 218 (219)
..+...+..+ ++|++|++++|.+++. .++..+..++ +|++|++++|+++
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 0111222232 3566666666655430 1222333443 5666666666553
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=7.1e-12 Score=112.00 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=30.7
Q ss_pred CEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 183 ETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 183 ~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
+.|++++|.++. +|..+..+++|++|++++|+++|
T Consensus 210 ~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 210 IFFRCRENRITH--IPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred eEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence 899999999865 88888889999999999999864
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=5.8e-14 Score=108.76 Aligned_cols=110 Identities=23% Similarity=0.250 Sum_probs=91.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCch------hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccC
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPP------EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELG 168 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~------~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~ 168 (219)
+.....++.++++.+.+.+. +|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~-~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~------- 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK------- 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBC-CTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-------
T ss_pred HHhcccccCcchheeEeccc-cCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-------
Confidence 44455666667777766664 554 89999999999999999995 78 8899999999999999984
Q ss_pred CccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 169 KTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 169 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
.+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++
T Consensus 84 --~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 84 --KIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp --SCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCC
T ss_pred --cccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCc
Confidence 467777778999999999999977 56 68889999999999999863
No 123
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=2e-11 Score=102.07 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=88.1
Q ss_pred CEeecCCC-CCCCCCCchhhcCCCCCCEEEccc-CCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcC
Q 040237 102 LSGNLAGN-DFRYPEIPPEIANLSRLSYLNLSD-SFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKL 179 (219)
Q Consensus 102 ~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l 179 (219)
..++++++ +++ .+|. +..+++|++|+|++ |.+++..|..|..+++|+.|+|++|++++ ..|..+.++
T Consensus 11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~l 79 (347)
T 2ifg_A 11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--------VAPDAFHFT 79 (347)
T ss_dssp SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--------ECTTGGGSC
T ss_pred CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--------eCHHHhcCC
Confidence 35688888 888 4899 99999999999996 99997666789999999999999999954 456678999
Q ss_pred CCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 180 TNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 180 ~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
++|++|+|++|++++ ..+..+..++ |+.|++.+|++.
T Consensus 80 ~~L~~L~l~~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 80 PRLSRLNLSFNALES-LSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCEEECCSSCCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred cCCCEEeCCCCccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence 999999999999987 3344455554 999999999875
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=2.4e-12 Score=109.28 Aligned_cols=120 Identities=22% Similarity=0.210 Sum_probs=71.8
Q ss_pred cccCCCCCEeecCCCCCCCCC----CchhhcCCCCCCEEEcccCCCC----CCCchhhhcCCCCcEEEccCCCCCCCccc
Q 040237 95 AFSILSILSGNLAGNDFRYPE----IPPEIANLSRLSYLNLSDSFFT----GQIPSEILELSNLVSLDLSGNGYSGGFLE 166 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~----~p~~l~~l~~L~~L~Ls~n~l~----g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~ 166 (219)
+..+++|++|++++|.+.... +|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~--- 259 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR--- 259 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH---
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh---
Confidence 445566666666666655110 2225556666777777777664 35566666667777777777766321
Q ss_pred cCCccccHHHhc--CCCCCEEeccCccCCCCC----cChhh-cCCCCCCEeecccccccC
Q 040237 167 LGKTSLTNLVQK--LTNLETLNLGRVLIFNTP----IPHNL-GNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 167 ~~~~~~p~~l~~--l~~L~~L~l~~N~l~~~~----~p~~l-~~l~~L~~L~ls~N~l~G 219 (219)
+...++..+.. +++|++|++++|.+++ . +|..+ .++++|++|++++|++++
T Consensus 260 -~~~~l~~~l~~~~~~~L~~L~L~~n~i~~-~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 260 -GAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp -HHHHHHHHHHTCSSCCCCEEECCSSCCBH-HHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred -hHHHHHHHHhhccCCCeEEEECcCCcCCH-HHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 00124555533 6777777777777754 2 55555 456777777777777654
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=4.7e-11 Score=103.97 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=81.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccH
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTN 174 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~ 174 (219)
+..+++|++|++++|.+++ +| +..+++|++|++++|++++ +| ++.+++|++|++++|++++ ++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~---------l~- 143 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE---------ID- 143 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC---------CC-
T ss_pred cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce---------ec-
Confidence 7778888888888888885 43 7788888888888888885 55 7788888888888888854 22
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
++++++|++|++++|...+ .+ .+..+++|++|++++|++++
T Consensus 144 -l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 144 -VSHNTQLTELDCHLNKKIT-KL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp -CTTCTTCCEEECTTCSCCC-CC--CCTTCTTCCEEECCSSCCCC
T ss_pred -cccCCcCCEEECCCCCccc-cc--ccccCCcCCEEECCCCccce
Confidence 6678888888888886555 45 36778888888888888764
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=1.2e-11 Score=110.50 Aligned_cols=104 Identities=23% Similarity=0.283 Sum_probs=62.5
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCc
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGF 164 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~ 164 (219)
+++++ +|. +. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++++|.+++
T Consensus 69 n~L~~-lp~~l~--~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-- 134 (571)
T 3cvr_A 69 LNLSS-LPDNLP--PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-- 134 (571)
T ss_dssp SCCSC-CCSCCC--TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC--
T ss_pred CCCCc-cCHhHc--CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC--
Confidence 34444 665 42 67888888888887 367 456788888888888875 666 543 77777777777754
Q ss_pred cccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 165 LELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 165 ~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+|. .+++|++|++++|.+++ +|. .+++|++|++++|+++
T Consensus 135 -------lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 135 -------LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp -------CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCS
T ss_pred -------CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCC
Confidence 222 34445555555555543 333 2344444444444443
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.23 E-value=4.4e-12 Score=107.66 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=63.5
Q ss_pred ccCCCCCEeecCCCCCCCC---CCchhhcCCCCCCEEEcccCCCCCCCchh----hhcC---------CCCcEEEccCCC
Q 040237 96 FSILSILSGNLAGNDFRYP---EIPPEIANLSRLSYLNLSDSFFTGQIPSE----ILEL---------SNLVSLDLSGNG 159 (219)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~----~~~l---------~~L~~L~Ls~N~ 159 (219)
..+++|++|++++|.+... .+|..+..+++|++|++++|.+++..+.. +..+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 4667777777777776641 04555666666666666666664322222 2222 566666666666
Q ss_pred CCC-Cccc----------cC---------C--c---cccHHHhcCCCCCEEeccCccCC----CCCcChhhcCCCCCCEe
Q 040237 160 YSG-GFLE----------LG---------K--T---SLTNLVQKLTNLETLNLGRVLIF----NTPIPHNLGNLSSLRFL 210 (219)
Q Consensus 160 l~g-~~~~----------~~---------~--~---~~p~~l~~l~~L~~L~l~~N~l~----~~~~p~~l~~l~~L~~L 210 (219)
++. .++. +. . + ..+..+..+++|++|++++|.++ + .+|..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEE
Confidence 541 1110 00 0 0 01114445555666666655553 2 345555556666666
Q ss_pred eccccccc
Q 040237 211 SLQNCLVQ 218 (219)
Q Consensus 211 ~ls~N~l~ 218 (219)
++++|+++
T Consensus 250 ~L~~n~i~ 257 (386)
T 2ca6_A 250 GLNDCLLS 257 (386)
T ss_dssp ECTTCCCC
T ss_pred ECCCCCCc
Confidence 66666554
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.20 E-value=1e-10 Score=101.81 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=39.4
Q ss_pred ccccccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCC
Q 040237 92 LAAAFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG 162 (219)
Q Consensus 92 lp~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g 162 (219)
+|.+..+++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CcccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 4445666666666666666653 44322 366666666666663 45 46677777777777777654
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.13 E-value=2.3e-10 Score=103.22 Aligned_cols=78 Identities=29% Similarity=0.297 Sum_probs=56.2
Q ss_pred CCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcC
Q 040237 124 SRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGN 203 (219)
Q Consensus 124 ~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~ 203 (219)
++|++|++++|.++ .+| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++. +|..+.+
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~---------~lp~---~~~~L~~L~Ls~N~L~~--lp~~l~~ 282 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT---------SLPM---LPSGLLSLSVYRNQLTR--LPESLIH 282 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS---------CCCC---CCTTCCEEECCSSCCCS--CCGGGGG
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC---------cCCc---ccccCcEEeCCCCCCCc--CCHHHhh
Confidence 45555566666555 244 33456666666666653 3444 56789999999999965 8999999
Q ss_pred CCCCCEeecccccccC
Q 040237 204 LSSLRFLSLQNCLVQG 219 (219)
Q Consensus 204 l~~L~~L~ls~N~l~G 219 (219)
+++|+.|++++|+++|
T Consensus 283 l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 283 LSSETTVNLEGNPLSE 298 (622)
T ss_dssp SCTTCEEECCSCCCCH
T ss_pred ccccCEEEecCCCCCC
Confidence 9999999999999864
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.11 E-value=3e-10 Score=98.82 Aligned_cols=98 Identities=24% Similarity=0.323 Sum_probs=55.3
Q ss_pred CCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhc
Q 040237 99 LSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQK 178 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~ 178 (219)
++|++|++++|.+.+ +|.. .++|++|++++|.+++ +| .++.+++|++|++++|.+++ +|..
T Consensus 111 ~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~---------lp~~--- 171 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK---------LPDL--- 171 (454)
T ss_dssp TTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC---------CCCC---
T ss_pred CCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc---------cCCC---
Confidence 566666666666653 3321 1567777777777763 66 46677777777777777653 1111
Q ss_pred CCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 179 LTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 179 l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+|++|++++|.+++ +| .++++++|++|++++|+++
T Consensus 172 ~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 172 PPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCS
T ss_pred cccccEEECcCCcCCc--Cc-cccCCCCCCEEECCCCcCC
Confidence 1245555555555544 34 3455555555555555543
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.09 E-value=3e-10 Score=102.50 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=45.4
Q ss_pred cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCC
Q 040237 91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSG 162 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g 162 (219)
.+|. +. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+++
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred ccChhhC--CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence 5565 43 68888888888887 3666 5678888888888887 5665 56778888888887754
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.08 E-value=9.7e-11 Score=98.66 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=98.9
Q ss_pred CCccccccc-cccCCCCCEeecCCCCCCCCCCc----hhhcCCC-CCCEEEcccCCCCCCCchhhhcC-----CCCcEEE
Q 040237 86 SKVPSTLAA-AFSILSILSGNLAGNDFRYPEIP----PEIANLS-RLSYLNLSDSFFTGQIPSEILEL-----SNLVSLD 154 (219)
Q Consensus 86 ~~l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p----~~l~~l~-~L~~L~Ls~n~l~g~lp~~~~~l-----~~L~~L~ 154 (219)
++++|.+|. +...++|++|++++|.++.. .+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 467788888 56666799999999999864 44 6678888 99999999999998878777775 9999999
Q ss_pred ccCCCCCCCccccCCccccHHHhcC-CCCCEEeccCccCCCCCcChhh----cC-CCCCCEeeccccccc
Q 040237 155 LSGNGYSGGFLELGKTSLTNLVQKL-TNLETLNLGRVLIFNTPIPHNL----GN-LSSLRFLSLQNCLVQ 218 (219)
Q Consensus 155 Ls~N~l~g~~~~~~~~~~p~~l~~l-~~L~~L~l~~N~l~~~~~p~~l----~~-l~~L~~L~ls~N~l~ 218 (219)
+++|.+++..+ ..+...+..+ ++|++|++++|.+++ ..+..+ .. .++|++|++++|+++
T Consensus 87 Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 87 LSGNFLSYKSS----DELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CCSSCGGGSCH----HHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CcCCcCChHHH----HHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 99999854211 1222345555 899999999999987 444443 34 369999999999986
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.04 E-value=3.6e-11 Score=103.85 Aligned_cols=115 Identities=21% Similarity=0.135 Sum_probs=63.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhc-----CCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCCCCCcc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIA-----NLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGYSGGFL 165 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~-----~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~ 165 (219)
+..+++|++|++++|.+... .+..+. ..++|++|++++|.+++. +|..+..+++|++|++++|.+++
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--- 355 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED--- 355 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH---
T ss_pred HhhCCCcceEECCCCCCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc---
Confidence 44455555555555554321 111121 124555566665555533 34445556667777777666532
Q ss_pred ccCCccccHHHh----c-CCCCCEEeccCccCCC---CCcChhhcCCCCCCEeeccccccc
Q 040237 166 ELGKTSLTNLVQ----K-LTNLETLNLGRVLIFN---TPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 166 ~~~~~~~p~~l~----~-l~~L~~L~l~~N~l~~---~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..+..+. . .++|++|++++|.+++ ..+|..+..+++|++|++++|+++
T Consensus 356 -----~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 356 -----AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp -----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred -----ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 2222222 2 5677788888777752 035666777788888888888765
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.99 E-value=2.7e-10 Score=95.58 Aligned_cols=106 Identities=15% Similarity=0.062 Sum_probs=75.9
Q ss_pred CcccccCCCCCCC--ccccccc-cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCch-hhhcCCC
Q 040237 75 KVASWKQGEAASK--VPSTLAA-AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPS-EILELSN 149 (219)
Q Consensus 75 ~~~~W~~~~~c~~--l~g~lp~-l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~ 149 (219)
+.|+|. .+.|.+ ++ .+|. + .+++++|++++|+++ .+|+ .+.++++|++|++++|++.+.+|. .|.++++
T Consensus 7 C~C~~~-~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 7 CHCSNR-VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp SEEETT-EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred cEeeCC-EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 446665 567732 33 4555 4 257889999999998 3665 588999999999999998766665 4677877
Q ss_pred CcE-EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCC
Q 040237 150 LVS-LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFN 194 (219)
Q Consensus 150 L~~-L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~ 194 (219)
+++ +.++.|+++. ..|..+..+++|++|++++|.+..
T Consensus 81 l~~~l~~~~N~l~~--------l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 81 LHEIRIEKANNLLY--------INPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp CCEEEEEEETTCCE--------ECTTSBCCCTTCCEEEEEEECCSS
T ss_pred hhhhhcccCCcccc--------cCchhhhhcccccccccccccccc
Confidence 765 5566677742 235567788888888888888765
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.97 E-value=2e-10 Score=99.16 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=28.5
Q ss_pred ccHHHhcCCCCCEEeccCccCCCCCcChhhcC-----CCCCCEeeccccccc
Q 040237 172 LTNLVQKLTNLETLNLGRVLIFNTPIPHNLGN-----LSSLRFLSLQNCLVQ 218 (219)
Q Consensus 172 ~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~-----l~~L~~L~ls~N~l~ 218 (219)
++..+..+++|++|++++|.+++ ..+..+.. .++|++|++++|+++
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 45556666777777777777655 33333322 557777777777664
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.95 E-value=8.2e-10 Score=92.62 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=84.5
Q ss_pred CEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCcccc-HHHhcC
Q 040237 102 LSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSLT-NLVQKL 179 (219)
Q Consensus 102 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p-~~l~~l 179 (219)
++++.++++++ ++|..+ .+++++|++++|+++ .+|. .|.++++|++|++++|++.+ .+| ..+.++
T Consensus 12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~--------~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE--------VIEADVFSNL 78 (350)
T ss_dssp TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCC--------EECTTSBCSC
T ss_pred CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCC--------ccChhHhhcc
Confidence 57889999998 588876 378999999999999 6665 68999999999999999844 344 346788
Q ss_pred CCCCE-EeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 180 TNLET-LNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 180 ~~L~~-L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+++++ +.+.+|++.. ..|..+..+++|++|++++|+++
T Consensus 79 ~~l~~~l~~~~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTCCEEEEEEETTCCE-ECTTSBCCCTTCCEEEEEEECCS
T ss_pred hhhhhhhcccCCcccc-cCchhhhhccccccccccccccc
Confidence 88765 6666788977 45678899999999999999875
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.89 E-value=2.7e-10 Score=101.35 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=81.8
Q ss_pred CCccccccc-ccc-CCCCCEeecC----CCCCCCCC----CchhhcCCCCCCEEEcccC--CCCCCCchhhhc-CCCCcE
Q 040237 86 SKVPSTLAA-AFS-ILSILSGNLA----GNDFRYPE----IPPEIANLSRLSYLNLSDS--FFTGQIPSEILE-LSNLVS 152 (219)
Q Consensus 86 ~~l~g~lp~-l~~-l~~L~~L~L~----~n~l~~~~----~p~~l~~l~~L~~L~Ls~n--~l~g~lp~~~~~-l~~L~~ 152 (219)
+.+++..+. +.. +++|++|+++ .|.+++.. ++..+..+++|++|+++.+ .+++..+..+.. +++|++
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 344443333 333 6667777774 45555310 2223555777777777643 355444444443 778888
Q ss_pred EEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccccC
Q 040237 153 LDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQG 219 (219)
Q Consensus 153 L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~G 219 (219)
|++++|.+++ ..++..+..+++|++|++++|.+++..++..+..+++|++|++++|++++
T Consensus 468 L~L~~n~l~~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 468 MLLGYVGESD-------EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp EEECSCCSSH-------HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred eeccCCCCCH-------HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 8888887742 24566678889999999999988762355556678899999999998763
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=4.6e-10 Score=95.25 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=75.9
Q ss_pred cCCCCCEeecCCCCCCCCCCchhh-----cCCCCCCEEEcccCCCCC----CCchhhhcCCCCcEEEccCCCCCCCcccc
Q 040237 97 SILSILSGNLAGNDFRYPEIPPEI-----ANLSRLSYLNLSDSFFTG----QIPSEILELSNLVSLDLSGNGYSGGFLEL 167 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~~p~~l-----~~l~~L~~L~Ls~n~l~g----~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~ 167 (219)
.+.+|++|++++|.++.. -...+ ...++|++|++++|.++. .++..+..+++|++|++++|.++..
T Consensus 124 ~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~---- 198 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE---- 198 (372)
T ss_dssp HHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH----
T ss_pred HHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH----
Confidence 455677777777776532 11222 245778888888887763 2344456677888888888877420
Q ss_pred CCccccHHHhcCCCCCEEeccCccCCCC---CcChhhcCCCCCCEeeccccccc
Q 040237 168 GKTSLTNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 168 ~~~~~p~~l~~l~~L~~L~l~~N~l~~~---~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+...+...+...++|++|++++|.+++. .++..+...++|++|++++|.|+
T Consensus 199 g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 0113455667777888888888888651 13344556688888888888875
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=6.7e-10 Score=94.26 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=84.9
Q ss_pred CCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhh-----hcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 98 ILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEI-----LELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 98 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~-----~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
..+|++|++++|.+....+......+++|++|++++|.++......+ ...++|+.|++++|.++.. +...+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~----~~~~l 175 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA----GVAVL 175 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH----HHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH----HHHHH
Confidence 36899999999988642122223346788999999999875433333 2467899999999988421 01235
Q ss_pred cHHHhcCCCCCEEeccCccCCCC---CcChhhcCCCCCCEeeccccccc
Q 040237 173 TNLVQKLTNLETLNLGRVLIFNT---PIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 173 p~~l~~l~~L~~L~l~~N~l~~~---~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+..+...++|++|++++|.+++. .++..+...++|++|++++|.++
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 66678889999999999998651 13556777889999999999885
No 140
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=3.5e-09 Score=81.07 Aligned_cols=124 Identities=17% Similarity=0.122 Sum_probs=93.1
Q ss_pred ccccc-cccCCCCCEeecCCC-CCCCC---CCchhhcCCCCCCEEEcccCCCCCC----CchhhhcCCCCcEEEccCCCC
Q 040237 90 STLAA-AFSILSILSGNLAGN-DFRYP---EIPPEIANLSRLSYLNLSDSFFTGQ----IPSEILELSNLVSLDLSGNGY 160 (219)
Q Consensus 90 g~lp~-l~~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g~----lp~~~~~l~~L~~L~Ls~N~l 160 (219)
..+.. +...+.|++|++++| .+... .+...+...++|++|++++|.+... +...+...+.|++|++++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 33444 677899999999999 88631 1345677789999999999999742 344566678999999999998
Q ss_pred CCCccccCCccccHHHhcCCCCCEEec--cCccCCCCC----cChhhcCCCCCCEeeccccccc
Q 040237 161 SGGFLELGKTSLTNLVQKLTNLETLNL--GRVLIFNTP----IPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 161 ~g~~~~~~~~~~p~~l~~l~~L~~L~l--~~N~l~~~~----~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
+.. +...+...+...++|++|++ ++|.+.. . +...+...++|++|++++|.+.
T Consensus 106 ~~~----g~~~l~~~L~~n~~L~~L~L~~~~N~i~~-~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGS----GILALVEALQSNTSLIELRIDNQSQPLGN-NVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHH----HHHHHHHGGGGCSSCCEEECCCCSSCCCH-HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHH----HHHHHHHHHHhCCCceEEEecCCCCCCCH-HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 421 11124566778889999999 8899875 3 3455666789999999999873
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.70 E-value=4.1e-09 Score=93.72 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=78.0
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcC-CCCCCEEEcc----cCCCCCC-----CchhhhcCCCCcEEEccCCC--CCC
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIAN-LSRLSYLNLS----DSFFTGQ-----IPSEILELSNLVSLDLSGNG--YSG 162 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls----~n~l~g~-----lp~~~~~l~~L~~L~Ls~N~--l~g 162 (219)
...+++|++|+++.+.+++. .+..+.. +++|++|+++ .|.+++. ++..+..+++|+.|+++.+. ++
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~- 451 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNE-SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT- 451 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHH-HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC-
T ss_pred HhhCccCeEEEeecCCccHH-HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc-
Confidence 44567777777776766653 4444544 7777777775 5566642 33345667788888886432 42
Q ss_pred CccccCCccccHHH-hcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 163 GFLELGKTSLTNLV-QKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 163 ~~~~~~~~~~p~~l-~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
...+..+ ..+++|++|++++|.+++..++..+..+++|++|++++|+++
T Consensus 452 -------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 452 -------DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp -------HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred -------HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 2233333 458899999999999876345666788999999999999875
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.54 E-value=9.3e-09 Score=91.34 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=77.1
Q ss_pred cCCCCCEeecC--C----CCCCCCC----CchhhcCCCCCCEEEcccCCCCCCCchhhhc-CCCCcEEEccCCCCCCCcc
Q 040237 97 SILSILSGNLA--G----NDFRYPE----IPPEIANLSRLSYLNLSDSFFTGQIPSEILE-LSNLVSLDLSGNGYSGGFL 165 (219)
Q Consensus 97 ~l~~L~~L~L~--~----n~l~~~~----~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~-l~~L~~L~Ls~N~l~g~~~ 165 (219)
.+++|++|+++ + +.++... ++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~--- 470 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD--- 470 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH---
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH---
Confidence 57788888888 3 4444210 122255678888888876 565554555555 7889999999998743
Q ss_pred ccCCccccHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeeccccccc
Q 040237 166 ELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 166 ~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
..++.....+++|++|++++|.+++..+......+++|++|++++|+++
T Consensus 471 ----~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 471 ----LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp ----HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred ----HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 1233333678999999999999865122234556889999999998764
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=1.3e-07 Score=76.48 Aligned_cols=82 Identities=27% Similarity=0.309 Sum_probs=60.2
Q ss_pred cCCCCCCEEEcccCCCCC--CCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCCCCCcC
Q 040237 121 ANLSRLSYLNLSDSFFTG--QIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIFNTPIP 198 (219)
Q Consensus 121 ~~l~~L~~L~Ls~n~l~g--~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~p 198 (219)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+++. ..+ ..+..+ +|++|++++|.+.+ .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~------~~l-~~l~~l-~L~~L~L~~Npl~~-~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE------REL-DKIKGL-KLEELWLDGNSLCD-TFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG------GGG-GGGTTS-CCSEEECTTSTTGG-GCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc------hhh-hhcccC-CcceEEccCCcCcc-ccC
Confidence 357889999999999886 4556777889999999999988641 111 223333 88999999999877 665
Q ss_pred h-------hhcCCCCCCEee
Q 040237 199 H-------NLGNLSSLRFLS 211 (219)
Q Consensus 199 ~-------~l~~l~~L~~L~ 211 (219)
. .+..+++|+.||
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 2 366788888876
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=3.4e-07 Score=74.07 Aligned_cols=89 Identities=24% Similarity=0.309 Sum_probs=66.4
Q ss_pred ccCCCCCEeecCCCCCCCC-CCchhhcCCCCCCEEEcccCCCCCCCchhhhcCC--CCcEEEccCCCCCCCccccCCccc
Q 040237 96 FSILSILSGNLAGNDFRYP-EIPPEIANLSRLSYLNLSDSFFTGQIPSEILELS--NLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 96 ~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~--~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
.++++|+.|+|++|.+.+. .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|.+++.+|... ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~-~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQS-TYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHH-HHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcch-hHH
Confidence 4688999999999999962 0446677899999999999999954 3444444 99999999999965433110 112
Q ss_pred cHHHhcCCCCCEEec
Q 040237 173 TNLVQKLTNLETLNL 187 (219)
Q Consensus 173 p~~l~~l~~L~~L~l 187 (219)
...+..+++|+.||=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 345788999999863
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.27 E-value=4e-07 Score=80.78 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=59.2
Q ss_pred cCCCCCEeecCCCCCCCCCCchhhc-CCCCCCEEEcccC-CCCCC-CchhhhcCCCCcEEEccCCCCCCCccccCCcccc
Q 040237 97 SILSILSGNLAGNDFRYPEIPPEIA-NLSRLSYLNLSDS-FFTGQ-IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT 173 (219)
Q Consensus 97 ~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n-~l~g~-lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p 173 (219)
.+++|++|++++|.+.+. .+..+. .+++|++|++++| .++.. ++.....+++|++|++++|.+++.. ...++
T Consensus 103 ~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~----~~~l~ 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS----GHWLS 177 (594)
T ss_dssp HCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC----GGGGG
T ss_pred hCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc----hHHHH
Confidence 455666666666665543 333443 4666666666666 33321 3333445666777777666654310 01122
Q ss_pred HHHhcCCCCCEEeccCcc--CCCCCcChhhcCCCCCCEeecccc
Q 040237 174 NLVQKLTNLETLNLGRVL--IFNTPIPHNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~--l~~~~~p~~l~~l~~L~~L~ls~N 215 (219)
.....+++|++|++++|. ++...++..+.++++|++|++++|
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 223345567777776665 211012222344567777777666
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=1.7e-06 Score=71.53 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=81.0
Q ss_pred CCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCc-EEEccCCCCCCCccccCCccc-cH
Q 040237 98 ILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLV-SLDLSGNGYSGGFLELGKTSL-TN 174 (219)
Q Consensus 98 l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~-~L~Ls~N~l~g~~~~~~~~~~-p~ 174 (219)
+++|+++++++|+++ .+|+ .|.++++|+.++++.| +...-+..|..+.+|+ .+++.+ .++ .+ +.
T Consensus 225 ~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~---------~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT---------AIEFG 291 (329)
T ss_dssp CTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC---------EECTT
T ss_pred cCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce---------EEchh
Confidence 789999999999988 3665 6889999999999998 6633344688999999 999988 442 34 46
Q ss_pred HHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeec
Q 040237 175 LVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSL 212 (219)
Q Consensus 175 ~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~l 212 (219)
.|.++++|+.+++++|.+.. --+..|.++++|+.+..
T Consensus 292 aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred hhhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence 78899999999999999866 33457889999998863
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=5.3e-07 Score=68.80 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=74.5
Q ss_pred chhhcCCCCCCEEEcccC-CCCCC----CchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCcc
Q 040237 117 PPEIANLSRLSYLNLSDS-FFTGQ----IPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVL 191 (219)
Q Consensus 117 p~~l~~l~~L~~L~Ls~n-~l~g~----lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~ 191 (219)
...+...+.|++|++++| .+... +...+...++|++|+|++|.+... +...+...+...++|++|++++|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~----g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP----VAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH----HHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH----HHHHHHHHHHhCCCcCEEECcCCc
Confidence 345677899999999999 88742 344566778999999999998421 112345667777899999999999
Q ss_pred CCCC---CcChhhcCCCCCCEeec--cccccc
Q 040237 192 IFNT---PIPHNLGNLSSLRFLSL--QNCLVQ 218 (219)
Q Consensus 192 l~~~---~~p~~l~~l~~L~~L~l--s~N~l~ 218 (219)
+.+. .+...+...++|++|++ ++|.++
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 9761 14566777889999999 889875
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=3.4e-06 Score=69.78 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCCCCCccccCCccc-cHHHhcCCCCC-EEeccCccCCCCCcCh
Q 040237 123 LSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGYSGGFLELGKTSL-TNLVQKLTNLE-TLNLGRVLIFNTPIPH 199 (219)
Q Consensus 123 l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~-p~~l~~l~~L~-~L~l~~N~l~~~~~p~ 199 (219)
+++|+++++++|+++ .+|+ .|..+.+|+.+++.+| ++ .+ +..|.++.+|+ .+++.+ .++. --+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~---------~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK---------TIGQRVFSNCGRLAGTLELPA-SVTA-IEFG 291 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC---------EECTTTTTTCTTCCEEEEECT-TCCE-ECTT
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc---------eehHHHhhCChhccEEEEEcc-cceE-Echh
Confidence 567777777777777 4444 5677777888877776 42 23 34577788888 888877 5543 2246
Q ss_pred hhcCCCCCCEeeccccccc
Q 040237 200 NLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 200 ~l~~l~~L~~L~ls~N~l~ 218 (219)
.|.++++|+.+++++|+++
T Consensus 292 aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTTCTTEEEEEECSSCCC
T ss_pred hhhCCccCCEEEeCCCccC
Confidence 7888888888888777653
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=9.3e-07 Score=74.63 Aligned_cols=64 Identities=14% Similarity=0.317 Sum_probs=40.7
Q ss_pred cCCCCcEEEccCCCCCCCccccCCccccHHHh---cCCCCCEEeccCccCCCCC----cChhhcCCCCCCEeeccccccc
Q 040237 146 ELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQ---KLTNLETLNLGRVLIFNTP----IPHNLGNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 146 ~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~---~l~~L~~L~l~~N~l~~~~----~p~~l~~l~~L~~L~ls~N~l~ 218 (219)
.+++|+.|++++|.+.. ..+..+. .+++|++|+++.|.+.+ . ++..+.++++|+.|++++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~--------~~~~~la~a~~~~~L~~LdLs~n~L~d-~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQN--------VVVEMFLESDILPQLETMDISAGVLTD-EGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHH--------HHHHHHHHCSSGGGCSEEECCSSCCBH-HHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCch--------HHHHHHHhCccCCCCCEEECCCCCCCh-HHHHHHHhhcccCCcceEEECCCCcCC
Confidence 35667777777666521 1222232 46778888888888765 2 3334456688888888888765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.11 E-value=1.4e-06 Score=73.50 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=76.0
Q ss_pred cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhh--cCCCCcEEEccC--CCCCCCcc
Q 040237 91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEIL--ELSNLVSLDLSG--NGYSGGFL 165 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~--~l~~L~~L~Ls~--N~l~g~~~ 165 (219)
.+.+ +..+++|+.|++++|.-. .++. + .+++|++|++..+.+.......+. .+++|+.|+|+. |...|...
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 3445 667788999998887311 2444 3 378899999988877643333443 689999999864 22211100
Q ss_pred ccCCccccHHH--hcCCCCCEEeccCccCCCCCcChhh---cCCCCCCEeeccccccc
Q 040237 166 ELGKTSLTNLV--QKLTNLETLNLGRVLIFNTPIPHNL---GNLSSLRFLSLQNCLVQ 218 (219)
Q Consensus 166 ~~~~~~~p~~l--~~l~~L~~L~l~~N~l~~~~~p~~l---~~l~~L~~L~ls~N~l~ 218 (219)
...+...+ ..+++|++|++.+|.+.+ ..+..+ ..+++|++|+++.|.++
T Consensus 239 ---~~~l~~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 239 ---MNVFRPLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp ---GGGTGGGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred ---HHHHHHHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCC
Confidence 00111222 347899999999998865 333333 35789999999999875
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=3.7e-06 Score=63.70 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=65.9
Q ss_pred cccc-cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCC-CCCCCchhhhcC----CCCcEEEccCCC-CCCC
Q 040237 91 TLAA-AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSF-FTGQIPSEILEL----SNLVSLDLSGNG-YSGG 163 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~g~lp~~~~~l----~~L~~L~Ls~N~-l~g~ 163 (219)
.+|. ...--.|++||++++.++.. --..+..+++|++|+|+++. ++..--..+..+ ++|++|++++|. +|.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD- 129 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD- 129 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH-
T ss_pred cCCcccCCCceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH-
Confidence 4454 32335799999999987743 22457889999999999985 664433445554 379999999985 531
Q ss_pred ccccCCccccHHHhcCCCCCEEeccCcc-CCC
Q 040237 164 FLELGKTSLTNLVQKLTNLETLNLGRVL-IFN 194 (219)
Q Consensus 164 ~~~~~~~~~p~~l~~l~~L~~L~l~~N~-l~~ 194 (219)
.--..+.++++|++|+++++. +++
T Consensus 130 -------~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 -------KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -------HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred -------HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 223456788999999999875 544
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=2.2e-05 Score=59.42 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=63.7
Q ss_pred CCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCC-CCCCccccCCccccHHHhcC----CCCCEEeccCcc-CCCCC
Q 040237 123 LSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNG-YSGGFLELGKTSLTNLVQKL----TNLETLNLGRVL-IFNTP 196 (219)
Q Consensus 123 l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~-l~g~~~~~~~~~~p~~l~~l----~~L~~L~l~~N~-l~~~~ 196 (219)
-..|+.||++++.++..--..+..+++|+.|+|++|. ++ ..--..++.+ ++|++|++++|. +++ .
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It--------D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD-~ 130 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE--------DGCLERLSQLENLQKSMLEMEIISCGNVTD-K 130 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC--------HHHHHHHHTCHHHHHHCCEEEEESCTTCCH-H
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC--------HHHHHHHHhcccccCCCCEEEcCCCCcCCH-H
Confidence 3579999999999876555567889999999999985 53 2222345554 379999999975 776 3
Q ss_pred cChhhcCCCCCCEeeccccc
Q 040237 197 IPHNLGNLSSLRFLSLQNCL 216 (219)
Q Consensus 197 ~p~~l~~l~~L~~L~ls~N~ 216 (219)
--..+.++++|++|+++++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 33557789999999999875
No 153
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.34 E-value=0.0001 Score=56.76 Aligned_cols=123 Identities=9% Similarity=0.021 Sum_probs=84.4
Q ss_pred cccc-cccCCCCCEeecCCC-CCCCC---CCchhhcCCCCCCEEEcccCCCCC----CCchhhhcCCCCcEEEccCCCCC
Q 040237 91 TLAA-AFSILSILSGNLAGN-DFRYP---EIPPEIANLSRLSYLNLSDSFFTG----QIPSEILELSNLVSLDLSGNGYS 161 (219)
Q Consensus 91 ~lp~-l~~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~g----~lp~~~~~l~~L~~L~Ls~N~l~ 161 (219)
.+.. +.+-+.|++|+|++| .+... .+-+.+..-+.|+.|+|++|.+.. .+...+..-..|+.|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3444 566788999999986 66521 134567778899999999999974 33445666789999999999985
Q ss_pred CCccccCCccccHHHhcCCCCCEEeccCc---cCCC---CCcChhhcCCCCCCEeecccccc
Q 040237 162 GGFLELGKTSLTNLVQKLTNLETLNLGRV---LIFN---TPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 162 g~~~~~~~~~~p~~l~~l~~L~~L~l~~N---~l~~---~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
.. +...+-+.+..-+.|++|++++| .+.. +.+...+..-+.|+.|+++.|.+
T Consensus 112 ~~----Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 112 PE----LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HH----HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HH----HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 31 11123445666678999999865 3332 01334556667899999988754
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.23 E-value=0.00084 Score=57.16 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=64.8
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCcc-------cc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFL-------EL 167 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~-------~~ 167 (219)
+.++.+|+.+++++|+++ .++.......+|+.+.+..+ +...-...|..+.+|+.+++..|- +. +. .+
T Consensus 176 F~~c~~L~~l~l~~n~l~--~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l-~~-I~~~aF~~~~L 250 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKIT--KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-ST-IGQEAFRESGI 250 (401)
T ss_dssp TTTCTTCCEEECTTSCCS--EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTC-CE-ECTTTTTTCCC
T ss_pred hhCcccCCeeecCCCcce--EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCc-cC-ccccccccCCc
Confidence 667777888888777766 34543333466666666633 442223346666677777765541 00 00 00
Q ss_pred C-------Cccc-cHHHhcCCCCCEEeccCccCCC---CCc-ChhhcCCCCCCEeeccc
Q 040237 168 G-------KTSL-TNLVQKLTNLETLNLGRVLIFN---TPI-PHNLGNLSSLRFLSLQN 214 (219)
Q Consensus 168 ~-------~~~~-p~~l~~l~~L~~L~l~~N~l~~---~~~-p~~l~~l~~L~~L~ls~ 214 (219)
. ...+ ...|.++++|+.+++.+|.+.. ..+ +..|..+++|+.+++..
T Consensus 251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 251 TTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp SEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred cEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 0 0112 3446677788888887776541 013 35677778888887764
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.14 E-value=0.00094 Score=56.85 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=24.6
Q ss_pred CCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCC-----CCCchhhhcCCCCcEEEcc
Q 040237 99 LSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFT-----GQIPSEILELSNLVSLDLS 156 (219)
Q Consensus 99 ~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~-----g~lp~~~~~l~~L~~L~Ls 156 (219)
.+|+.+.+. ++++. ++ ..+.++++|+.+++.+|.+. ..-+..|..+.+|+.+++.
T Consensus 248 ~~L~~i~lp-~~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 248 SGITTVKLP-NGVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CCCSEEEEE-TTCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred CCccEEEeC-CCccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 455555552 22331 22 24555555555555554432 0112234455555555554
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0028 Score=45.16 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=35.8
Q ss_pred EeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCch-hhhcCCCCcEEEccCCCC
Q 040237 103 SGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPS-EILELSNLVSLDLSGNGY 160 (219)
Q Consensus 103 ~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~-~~~~l~~L~~L~Ls~N~l 160 (219)
.++.++++++-..+|..+. +++++|+|++|+++ .+|. .|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 5666777665111554432 45777888888887 4444 466777888888888865
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.002 Score=45.93 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=25.9
Q ss_pred EEEcccCCCC-CCCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccC
Q 040237 128 YLNLSDSFFT-GQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLI 192 (219)
Q Consensus 128 ~L~Ls~n~l~-g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l 192 (219)
.++-+++.++ ..+|..+. .+++.|+|++|+++. --+..+..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~--------l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA--------LPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS--------CCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc--------cChhhhhhccccCEEEecCCCe
Confidence 4555555554 23443221 245566666665531 1122344555555666655544
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.68 E-value=0.0013 Score=50.57 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=67.3
Q ss_pred hhcCCCCCCEEEcccC-CCCC----CCchhhhcCCCCcEEEccCCCCCCCccccCCccccHHHhcCCCCCEEeccCccCC
Q 040237 119 EIANLSRLSYLNLSDS-FFTG----QIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLTNLVQKLTNLETLNLGRVLIF 193 (219)
Q Consensus 119 ~l~~l~~L~~L~Ls~n-~l~g----~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~ 193 (219)
.+.+-+.|++|+|++| .+.. .+...+..-..|+.|+|++|.+.. .+...+.+.+..-+.|++|+|+.|.|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd----~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD----SEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH----HHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh----HHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3456689999999986 7653 234456667899999999999842 112345566777789999999999997
Q ss_pred CC---CcChhhcCCCCCCEeecccc
Q 040237 194 NT---PIPHNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 194 ~~---~~p~~l~~l~~L~~L~ls~N 215 (219)
+. .+-..+..-+.|++|++++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 51 13345566678999999865
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.66 E-value=0.055 Score=45.38 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=57.4
Q ss_pred cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCc-hhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIP-SEILELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp-~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
+.++..|+.+.+..+-.. +. ..+.+++.|+.+.+.. .+. .++ ..|..+.+|+.+++..+ ++ .+
T Consensus 261 F~~c~~L~~i~lp~~~~~---I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~---------~I 325 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS---IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-IT---------QI 325 (394)
T ss_dssp TTTCSSCCEEECCTTCCE---ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CC---------EE
T ss_pred eeecccccEEecccccce---ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-cc---------Ee
Confidence 555667777776554332 22 3455666777776653 333 233 24566677777776554 21 22
Q ss_pred -cHHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeecccc
Q 040237 173 -TNLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 173 -p~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~N 215 (219)
...|.++.+|+.+.+..+ ++. +. ..|.++.+|+.+++.++
T Consensus 326 ~~~aF~~C~~L~~i~ip~s-v~~--I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSS-VTK--IPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCB--CCGGGGTTCTTCCEEEESSC
T ss_pred hHhHhhCCCCCCEEEECcc-cCE--EhHhHhhCCCCCCEEEECCc
Confidence 234666677777776543 322 33 45666677777766654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.97 E-value=0.067 Score=44.42 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=53.9
Q ss_pred cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCCc-hhhhcCCCCcEEEccCCCCCCCccccCCccc
Q 040237 95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQIP-SEILELSNLVSLDLSGNGYSGGFLELGKTSL 172 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~lp-~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~ 172 (219)
+.++..|+.+.+..+ ++ .+. ..+.+...|+.+.+..+ +. .++ ..|..+.+|+.+.+.++.++ .+
T Consensus 236 f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~---------~I 301 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIE---------TL 301 (379)
T ss_dssp TTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCC---------EE
T ss_pred ccCCccceEEEcCCC-cc--EeCccccceeehhcccccccc-ce-eccccccccccccccccccccccc---------ee
Confidence 344555666555443 22 122 23445566666666433 32 222 24566677777777665542 22
Q ss_pred -cHHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeeccc
Q 040237 173 -TNLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQN 214 (219)
Q Consensus 173 -p~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~ 214 (219)
...+.++.+|+.+.+..+ +. .+. ..|.++.+|+.+.+..
T Consensus 302 ~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA-LK--TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCCCCCCT
T ss_pred hhhhhcCCCCCCEEEcCcc-cc--EEHHHHhhCCCCCCEEEECC
Confidence 234666777777777543 32 233 3466666666666543
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.93 E-value=0.052 Score=45.51 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=69.0
Q ss_pred cccCCCCCEeecCCCCCCCCCCch-hhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc-
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPP-EIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL- 172 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~- 172 (219)
+.++..|+.+.+.. .++ .+++ .+.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++ .+
T Consensus 284 F~~c~~L~~i~l~~-~i~--~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~---------~I~ 349 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RIT--ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT---------KIP 349 (394)
T ss_dssp TTTCTTCCEEECCT-TCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC---------BCC
T ss_pred cccccccccccCCC-ccc--ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC---------EEh
Confidence 67789999999864 444 2544 5888999999999865 44222346889999999999765 32 33
Q ss_pred cHHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccccc
Q 040237 173 TNLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNCLV 217 (219)
Q Consensus 173 p~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N~l 217 (219)
...|.++.+|+.+++.++... + ..+.....|+.+.+..|.+
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~---~-~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQ---W-NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHH---H-HTCBCCCCC----------
T ss_pred HhHhhCCCCCCEEEECCceee---h-hhhhccCCCCEEEeCCCCE
Confidence 456889999999999887542 1 3456677888888877654
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.45 E-value=0.052 Score=45.50 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=56.3
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCccc-c
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSL-T 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~-p 173 (219)
+..+..++.+....+.+. ...+..+.+|+.+.+..+ +...-...|..+.+|+.+++..+ ++ .+ .
T Consensus 272 F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~---------~I~~ 336 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE---------EIGK 336 (394)
T ss_dssp TTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC---------EECT
T ss_pred cccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc---------EEhH
Confidence 455566666655443221 123556667777776544 33122234666777777776543 21 23 2
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcC-hhhcCCCCCCEeecccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIP-HNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p-~~l~~l~~L~~L~ls~N 215 (219)
..|.++.+|+.+++..+ +.. ++ ..|.++++|+.+++..+
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRK--IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCE--ECTTTBTTCTTCCEEEEEGG
T ss_pred HhccCCCCCCEEEECcc-ccE--ehHHHhhCCCCCCEEEECCC
Confidence 34666777777777654 322 32 45666777777766543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.04 E-value=0.13 Score=43.14 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=27.5
Q ss_pred cccCCCCCEeecCCCCCCCCCCc-hhhcCCCCCCEEEcccCCCCCCC-chhhhcCCCCcEEEccCC
Q 040237 95 AFSILSILSGNLAGNDFRYPEIP-PEIANLSRLSYLNLSDSFFTGQI-PSEILELSNLVSLDLSGN 158 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~g~l-p~~~~~l~~L~~L~Ls~N 158 (219)
+..+.+|+.+.+.++ ++ .++ ..+.++++|+.+++..+ ++ .+ ...|.++.+|+.+.+..+
T Consensus 293 F~~~~~L~~i~l~~~-i~--~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VK--FIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECTT-CC--EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc-cc--eechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 444555555555433 22 122 23455555555555432 33 22 224555555555555443
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.48 E-value=0.51 Score=38.99 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=68.2
Q ss_pred cccCCCCCEeecCCCCCCCCCCchhhcCCCCCCEEEcccCCCCCCCchhhhcCCCCcEEEccCCCCCCCccccCCcccc-
Q 040237 95 AFSILSILSGNLAGNDFRYPEIPPEIANLSRLSYLNLSDSFFTGQIPSEILELSNLVSLDLSGNGYSGGFLELGKTSLT- 173 (219)
Q Consensus 95 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~g~lp~~~~~l~~L~~L~Ls~N~l~g~~~~~~~~~~p- 173 (219)
+.....++.+.+..+ +... -...+.....|+.+.+..+ ++..-...+..+.+|+.+.+..+ + ..++
T Consensus 213 f~~~~~l~~i~~~~~-~~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i---------~~i~~ 279 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V---------KTVPY 279 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C---------SEECT
T ss_pred cccccccceeeeccc-eeEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c---------eeccc
Confidence 344555666666443 2210 1234667778888887665 33122335677788888888654 2 1233
Q ss_pred HHHhcCCCCCEEeccCccCCCCCcChhhcCCCCCCEeecccc
Q 040237 174 NLVQKLTNLETLNLGRVLIFNTPIPHNLGNLSSLRFLSLQNC 215 (219)
Q Consensus 174 ~~l~~l~~L~~L~l~~N~l~~~~~p~~l~~l~~L~~L~ls~N 215 (219)
..+..+.+|+.+.+.++.+.. --...|.++.+|+.+.+..+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCTT
T ss_pred cccccccccccccccccccce-ehhhhhcCCCCCCEEEcCcc
Confidence 357788999999998887754 22367888999999998654
Done!