BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040238
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 146/475 (30%), Positives = 210/475 (44%), Gaps = 62/475 (13%)
Query: 34 NVSGQI-TSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLS--VLTK 90
N SG++ +L + L LDL+ N + G + + L +L L LS N S +L
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 91 ATSNTTSQKLKYIGLRSCNLT-KFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL 149
N L+ + L++ T K P L N L+ L LS N + G +P L ++ L
Sbjct: 385 LCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKL 441
Query: 150 NALNISHNFLTG-FDQHLVVLPANKGDLLTFDLSSNNLQGPLP--VPPPGTIHYLA-SNN 205
L + N L G Q L+ + L T L N+L G +P + +++++ SNN
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKT----LETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 206 SLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFI 265
LTGEIP WI L L L LS+N+ SG +P LG+ L LDL N F GTIP
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMF 556
Query: 266 KER-RIPRSLI----------NCSKLEFLGLGN-NQISDTFPSWLGTLPNLNVLILRSNI 313
K+ +I + I + K E G GN + L L N + S +
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV 373
YG P D S + +D+S N+ G +P K + I+N L +N
Sbjct: 617 -YGGHTSPTFDNNGS-MMFLDMSYNMLSGYIP-KEIGSMPYLFILN-----LGHNDISGS 668
Query: 374 IPASIANLKGXXXXXXXXXXXXGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433
IP + +L+G L LDLS+NK G+IPQ + LT L
Sbjct: 669 IPDEVGDLRG------------------------LNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 434 FFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGCESDVAPANEDHTK 488
++S+N+L+G IP QF TF F +N GLCG PL + C+ A H +
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQR 758
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 123/433 (28%), Positives = 198/433 (45%), Gaps = 55/433 (12%)
Query: 24 SLEAIHIAKCNVSGQITS--SLRNLSQLFFLDLAKNS--YRGTIKLDVLLTSWKNLEFLA 79
SL ++ +++ ++SG +T+ SL + S L FL+++ N+ + G + + L S + L+ A
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 80 LSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPK 139
S++ +V+ S+ + LK++ + ++ + + +L LD+S N +P
Sbjct: 158 NSISGANVVGWVLSDGCGE-LKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIP- 214
Query: 140 WLLDPNMQNLNALNISHNFLTG-FDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTI 198
+L D L L+IS N L+G F + + +L ++SSN GP+P P ++
Sbjct: 215 FLGD--CSALQHLDISGNKLSGDFSRAISTCT----ELKLLNISSNQFVGPIPPLPLKSL 268
Query: 199 HYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFF 257
YL+ + N TGEIP + L + D L+ LDL GN+F+
Sbjct: 269 QYLSLAENKFTGEIPDF------------------------LSGACDTLTGLDLSGNHFY 304
Query: 258 GTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSNIFYG 316
G +P F + ++ +N S P L + L VL L N F G
Sbjct: 305 GAVPPFFGSCSLLESLALS----------SNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 317 IIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPA 376
+ E T+ S L +DLS+N F G P+ LC N + + L NN F IP
Sbjct: 355 ELPESLTNLSAS-LLTLDLSSNNFSG--PILPNLCQNPKNTLQE--LYLQNNGFTGKIPP 409
Query: 377 SIANLKGXXXXXXXXXXXXGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFN 436
+++N G IPS LG+L L L L N G+IPQ+L+ + LE
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 437 VSDNHLTGLIPPG 449
+ N LTG IP G
Sbjct: 470 LDFNDLTGEIPSG 482
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 109/387 (28%), Positives = 174/387 (44%), Gaps = 66/387 (17%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ LYL+ N F+G + ++ N L ++H++ +SG I SSL +LS+L L L N
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
G I +++ K LE L L N L+ + P+ L N
Sbjct: 453 GEIPQELMYV--KTLETLILDFNDLT------------------------GEIPSGLSNC 486
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGD---LL 177
+L + LS+NR+ G++PKW+ ++NL L +S+N +G +PA GD L+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSG------NIPAELGDCRSLI 538
Query: 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237
DL++N G +P +A+ N + G+ +I N + + H +G L +
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAA-NFIAGKRYVYIKNDGMKKE---CHG--AGNLLE 592
Query: 238 CLGNSSDELSVL------DLQGNNFFGTIPNTF--------------IKERRIPRSLINC 277
G S++L+ L ++ + G TF + IP+ + +
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
L L LG+N IS + P +G L LN+L L SN G I P+ + L IDLSN
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSN 710
Query: 338 NIFIGTLP-LKSFLCWNAMKIVNTTGI 363
N G +P + F + K +N G+
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLNNPGL 737
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 145/472 (30%), Positives = 211/472 (44%), Gaps = 66/472 (13%)
Query: 34 NVSGQI-TSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLS--VLTK 90
N SG++ +L + L LDL+ N + G + + L +L L LS N S +L
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 91 ATSNTTSQKLKYIGLRSCNLT-KFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL 149
N L+ + L++ T K P L N L+ L LS N + G +P L ++ L
Sbjct: 388 LCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKL 444
Query: 150 NALNISHNFLTG-FDQHLVVLPANKGDLLTFDLSSNNLQGPLP--VPPPGTIHYLA-SNN 205
L + N L G Q L+ + L T L N+L G +P + +++++ SNN
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKT----LETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 206 SLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFI 265
LTGEIP WI L L L LS+N+ SG +P LG+ L LDL N F GTIP
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMF 559
Query: 266 KER-RIPRSLINCSKLEFL----------GLGN-NQISDTFPSWLGTLPNLNVLILRSNI 313
K+ +I + I + ++ G GN + L L N + S +
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV 373
YG P D S + +D+S N+ G +P K + I+N L +N
Sbjct: 620 -YGGHTSPTFDNNGS-MMFLDMSYNMLSGYIP-KEIGSMPYLFILN-----LGHNDISGS 671
Query: 374 IPASIANLKGXXXXXXXXXXXXGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433
IP + +L+G L LDLS+NK G+IPQ + LT L
Sbjct: 672 IPDEVGDLRG------------------------LNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 434 FFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGCESDVAPANED 485
++S+N+L+G IP QF TF F +N GLCG PL + C+ P+N D
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 124/442 (28%), Positives = 201/442 (45%), Gaps = 56/442 (12%)
Query: 17 GSIGNLR---SLEAIHIAKCNVSGQITS--SLRNLSQLFFLDLAKNS--YRGTIKLDVLL 69
GS+ + SL ++ +++ ++SG +T+ SL + S L FL+++ N+ + G + + L
Sbjct: 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150
Query: 70 TSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLS 129
S + L+ A S++ +V+ S+ + LK++ + ++ + + +L LD+S
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGE-LKHLAISGNKISGDVD-VSRCVNLEFLDVS 208
Query: 130 DNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGP 189
N +P +L D L L+IS N L+G + + +L ++SSN GP
Sbjct: 209 SNNFSTGIP-FLGD--CSALQHLDISGNKLSGDFSRAI---STCTELKLLNISSNQFVGP 262
Query: 190 LPVPPPGTIHYLA-SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSV 248
+P P ++ YL+ + N TGEIP + L + D L+
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDF------------------------LSGACDTLTG 298
Query: 249 LDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVL 307
LDL GN+F+G +P F + ++ +N S P L + L VL
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALS----------SNNFSGELPMDTLLKMRGLKVL 348
Query: 308 ILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSN 367
L N F G + E T+ S L +DLS+N F G P+ LC N + + L N
Sbjct: 349 DLSFNEFSGELPESLTNLSAS-LLTLDLSSNNFSG--PILPNLCQNPKNTLQE--LYLQN 403
Query: 368 NSFDSVIPASIANLKGXXXXXXXXXXXXGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLV 427
N F IP +++N G IPS LG+L L L L N G+IPQ+L+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 428 ELTFLEFFNVSDNHLTGLIPPG 449
+ LE + N LTG IP G
Sbjct: 464 YVKTLETLILDFNDLTGEIPSG 485
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 109/387 (28%), Positives = 174/387 (44%), Gaps = 66/387 (17%)
Query: 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60
LQ LYL+ N F+G + ++ N L ++H++ +SG I SSL +LS+L L L N
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 61 GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQ 120
G I +++ K LE L L N L+ + P+ L N
Sbjct: 456 GEIPQELMYV--KTLETLILDFNDLT------------------------GEIPSGLSNC 489
Query: 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGD---LL 177
+L + LS+NR+ G++PKW+ ++NL L +S+N +G +PA GD L+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSG------NIPAELGDCRSLI 541
Query: 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237
DL++N G +P +A+ N + G+ +I N + + H +G L +
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAA-NFIAGKRYVYIKNDGMKKE---CHG--AGNLLE 595
Query: 238 CLGNSSDELSVL------DLQGNNFFGTIPNTF--------------IKERRIPRSLINC 277
G S++L+ L ++ + G TF + IP+ + +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
L L LG+N IS + P +G L LN+L L SN G I P+ + L IDLSN
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSN 713
Query: 338 NIFIGTLP-LKSFLCWNAMKIVNTTGI 363
N G +P + F + K +N G+
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLNNPGL 740
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 128/302 (42%), Gaps = 56/302 (18%)
Query: 179 FDLSSNNLQGPLPVP------PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 232
DLS NL P P+P P Y+ N+L G IP I L L L ++H N+S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 233 GLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
G +P L + L LD N GT+P + SL N + F G N+IS
Sbjct: 115 GAIPDFL-SQIKTLVTLDFSYNALSGTLPPSI-------SSLPNLVGITFDG---NRISG 163
Query: 293 TFPSWLGTLPNL-NVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLC 351
P G+ L + + N G K P T + L +DLS N+ G + +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANLN-LAFVDLSRNMLEG----DASVL 216
Query: 352 WNAMKIVNTTGIILSNNS--FDSVIPASIANLKGXXXXXXXXXXXXGHIPSCLGNLPNLE 409
+ + K NT I L+ NS FD G + G NL
Sbjct: 217 FGSDK--NTQKIHLAKNSLAFD-----------------------LGKV----GLSKNLN 247
Query: 410 SLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGR 469
LDL NN+ G +PQ L +L FL NVS N+L G IP G FD +++ +N LCG
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307
Query: 470 PL 471
PL
Sbjct: 308 PL 309
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 99/250 (39%), Gaps = 54/250 (21%)
Query: 1 LQFLYLR-LNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSY 59
L FLY+ +NN G + +I L L ++I NVSG I L + L LD + N+
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 60 RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQN 119
GT+ + +S NL + NR+S + + S+
Sbjct: 138 SGTLPPSI--SSLPNLVGITFDGNRISGAIPDSYGSFSKLFT------------------ 177
Query: 120 QYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNA--LNISHNFLTGFDQHLVVLPANKGDL- 176
+ +S NR+ GK+P P NLN +++S N L G L N +
Sbjct: 178 -----SMTISRNRLTGKIP-----PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 177 -----LTFDLS----SNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLS 227
L FDL S NL G NN + G +P + L L SL +S
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNG-----------LDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 228 HNNLSGLLPQ 237
NNL G +PQ
Sbjct: 277 FNNLCGEIPQ 286
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NNQ+++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVL---DLS 129
K+ L LS N L + AT + +L + L C LTK LQ L VL DLS
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRCELTK----LQVDGTLPVLGTLDLS 85
Query: 130 DNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGP 189
N++Q +P LL + L L++S N LT + G+L L N L+
Sbjct: 86 HNQLQS-LP--LLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTL 139
Query: 190 LP---VPPPGTIHYLASNNSLTGEIPSWICN-LNILESLVLSHNNL 231
P P P +NN LT E+P+ + N L L++L+L N+L
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NNQ+++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVL---DLS 129
K+ L LS N L + AT + +L + L C LTK LQ L VL DLS
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRCELTK----LQVDGTLPVLGTLDLS 85
Query: 130 DNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGP 189
N++Q +P LL + L L++S N LT + G+L L N L+
Sbjct: 86 HNQLQS-LP--LLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTL 139
Query: 190 LP---VPPPGTIHYLASNNSLTGEIPSWICN-LNILESLVLSHNNL 231
P P P +NN LT E+P+ + N L L++L+L N+L
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NNQ+++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVL---DLS 129
K+ L LS N L + AT + +L + L C LTK LQ L VL DLS
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRCELTK----LQVDGTLPVLGTLDLS 85
Query: 130 DNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGP 189
N++Q +P LL + L L++S N LT + G+L L N L+
Sbjct: 86 HNQLQS-LP--LLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTL 139
Query: 190 LP---VPPPGTIHYLASNNSLTGEIPSWICN-LNILESLVLSHNNL 231
P P P +NN LT E+P+ + N L L++L+L N+L
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NNQ+++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVL---DLS 129
K+ L LS N L + AT + +L + L C LTK LQ L VL DLS
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRCELTK----LQVDGTLPVLGTLDLS 85
Query: 130 DNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGP 189
N++Q +P LL + L L++S N LT + G+L L N L+
Sbjct: 86 HNQLQS-LP--LLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTL 139
Query: 190 LP---VPPPGTIHYLASNNSLTGEIPSWICN-LNILESLVLSHNNL 231
P P P +NN LT E+P+ + N L L++L+L N+L
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 87/224 (38%), Gaps = 43/224 (19%)
Query: 249 LDLQGNNFFGTIPNTFIKERRIPRSLINCSKLE----FLGLGNNQISDTFPSWLGTLPNL 304
L+ GN+ G P FI +I +SL L F GL N+ + WLGT +
Sbjct: 183 LNFNGNDIKGIEPGAFIS--KIFQSLKFGGSLNLFIIFKGLQNSTLQSL---WLGTFEDT 237
Query: 305 NVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTG-- 362
+ L S F G+ K R DLS++ +F C+ ++ ++ T
Sbjct: 238 DDQYLTSATFEGLCDMSVESINLQKHRFSDLSSS---------TFRCFTRVQELDLTAAH 288
Query: 363 ----------------IILSNNSFDSVI---PASIANLKGXXXXXXXXXXXXGHIPSCLG 403
++L+ NSFD + AS +L+ G CL
Sbjct: 289 LNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLG--TRCLE 346
Query: 404 NLPNLESLDLSNNKFSGQ--IPQQLVELTFLEFFNVSDNHLTGL 445
L NL+ LDLS++ QL L L++ N+S N GL
Sbjct: 347 KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGL 390
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NN +++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 19/166 (11%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVL---DLS 129
K+ L LS N L + AT + +L + L C LTK LQ L VL DLS
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRCELTK----LQVDGTLPVLGTLDLS 85
Query: 130 DNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGP 189
N++Q +P LL + L L++S N LT + G+L L N L+
Sbjct: 86 HNQLQS-LP--LLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTL 139
Query: 190 LP---VPPPGTIHYLASNNSLTGEIPSWICN-LNILESLVLSHNNL 231
P P P +NN LT E+P+ + N L L++L+L N+L
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NN +++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 77 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NN +++ L L NL+ L+L+ N Y I K
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 190
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVL---DLS 129
K+ L LS N L + AT + +L + L C LTK LQ L VL DLS
Sbjct: 32 KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRCELTK----LQVDGTLPVLGTLDLS 86
Query: 130 DNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGP 189
N++Q +P LL + L L++S N LT + G+L L N L+
Sbjct: 87 HNQLQS-LP--LLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTL 140
Query: 190 LP---VPPPGTIHYLASNNSLTGEIPSWICN-LNILESLVLSHNNL 231
P P P +NN+LT E+P+ + N L L++L+L N+L
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NN +++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NN +++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----------FGTIPNTFIKE 267
L +L +L LSHN L L LG + L+VLD+ N G + ++K
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 268 RRI----PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319
+ P L KLE L L NN +++ L L NL+ L+L+ N Y I K
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVL---DLS 129
K+ L LS N L + AT + +L + L C LTK LQ L VL DLS
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRCELTK----LQVDGTLPVLGTLDLS 85
Query: 130 DNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGP 189
N++Q +P LL + L L++S N LT + G+L L N L+
Sbjct: 86 HNQLQS-LP--LLGQTLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELKTL 139
Query: 190 LP---VPPPGTIHYLASNNSLTGEIPSWICN-LNILESLVLSHNNL 231
P P P +NN+LT E+P+ + N L L++L+L N+L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 289 QISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKS 348
Q S T WLGT +++ + S + G+ + + R D+S+ F L+
Sbjct: 220 QNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQE 279
Query: 349 FLCW--------NAMKIVNT-TGIILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGHI- 398
+ MK +N ++LS N FD + S AN H+
Sbjct: 280 LDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLG 339
Query: 399 PSCLGNLPNLESLDLSNNKFSGQ--IPQQLVELTFLEFFNVSDNHLTGL 445
CL L NL++LDLS+N QL L+ L+ N+S N GL
Sbjct: 340 VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 9/180 (5%)
Query: 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLN 83
S+E++++ + S +++ + +QL LDL +G L + L+ L LS+N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG---LPSGMKGLNLLKKLVLSVN 308
Query: 84 RLSVLTK-ATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLL 142
L + + +N S YI L L+ +L LDLS N I+ L
Sbjct: 309 HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQ 368
Query: 143 DPNMQNLNALNISHNFLTGFD-QHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL 201
N+ +L LN+SHN G Q P L DL+ L P P +H+L
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECP----QLELLDLAFTRLHINAPQSPFQNLHFL 424
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 205 NSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTF 264
NSLT E+P+ I NL+ L L LSHN L+ LP LG S L+ FF + T
Sbjct: 257 NSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG------SCFQLKYFYFFDNMVTT- 307
Query: 265 IKERRIPRSLINCSKLEFLGLGNNQISDTF 294
+P N L+FLG+ N + F
Sbjct: 308 -----LPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 398 IPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDN 457
+P+ + NL NL LDLS+N+ + +P +L L++F DN +T L +F N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTL---PWEFGNLCN 317
Query: 458 TSFDSNSGLCGRPLSK 473
F G+ G PL K
Sbjct: 318 LQF---LGVEGNPLEK 330
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 19/112 (16%)
Query: 190 LPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL--LP---QCLGNSSD 244
LP PP +AS NSLT E+P +L +SL++ +NNL L LP + LG S++
Sbjct: 86 LPELPPHLESLVASCNSLT-ELPELPQSL---KSLLVDNNNLKALSDLPPLLEYLGVSNN 141
Query: 245 ELSVL-DLQGNNFFGTIP---NTFIKERRIPRSLINCSKLEFLGLGNNQISD 292
+L L +LQ ++F I N+ K +P SL EF+ GNNQ+ +
Sbjct: 142 QLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL------EFIAAGNNQLEE 187
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 68/276 (24%)
Query: 217 NLNILESLVLSHNNLSGL-LPQCLGNSSDELSVLDLQ----------------------- 252
N LESL L N++S + LP+ G +++L VLD Q
Sbjct: 127 NQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184
Query: 253 ---GNNFFGTIPNTFIKERRIPRSL----INCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
GN+ G P F + + +SL + F GL N+ I WLGT +++
Sbjct: 185 NLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL---WLGTFEDMD 239
Query: 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTG--- 362
+ +F G+ + K ++S+N +F C++ ++ ++ T
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSN---------TFHCFSGLQELDLTATHL 290
Query: 363 ---------------IILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGHIPS-CLGNLP 406
++LS N F+++ S +N + + CL NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 407 NLESLDLSNNKF--SGQIPQQLVELTFLEFFNVSDN 440
NL LDLS++ S QL L+ L+ N+S N
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 66/167 (39%), Gaps = 33/167 (19%)
Query: 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIG 342
L NN ++DT G L L LIL+ N + K L+ +D+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVS 387
Query: 343 TLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGHIPSCL 402
K W T +LS N +++ +I CL
Sbjct: 388 YDEKKGDCSW--------TKSLLSLNMSSNILTDTIFR--------------------CL 419
Query: 403 GNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
P ++ LDL +NK IP+Q+V+L L+ NV+ N L +P G
Sbjct: 420 P--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDG 462
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 163 DQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTG--EIPSWICNLNI 220
D +L LPA +L T ++S N L LPV PPG + +N LT +PS +C L I
Sbjct: 70 DNNLTSLPALPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWI 128
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 22/213 (10%)
Query: 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNV-----LILRSNIFYGIIKEPRTDC 325
P + KLE L L NQ+ + TL L V +R ++F G+ + +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 326 GFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT--------TGIILSNNSFDSVIPAS 377
G + L+ + N F G L S++ I T + L N V AS
Sbjct: 153 GTNPLKSSGIENGAFQGMKKL-SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 211
Query: 378 IANLKGXXXXXXXXXXXXGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437
+ L L N P+L L L+NNK ++P L + +++ +
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270
Query: 438 SDNHLTGL-----IPPG--KQFATFDNTSFDSN 463
+N+++ + PPG + A++ S SN
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 23/156 (14%)
Query: 142 LDP--NMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIH 199
+DP N+ NLN L +S N ++ + L + SSN + P+ T+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISAL-----SGLTSLQQLNFSSNQVTDLKPLANLTTLE 176
Query: 200 YLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259
L +++ +I S + L LESL+ ++N +S + P + + DELS L GN
Sbjct: 177 RLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELS---LNGNQ---- 228
Query: 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
+K+ SL N + L+ L NNQIS+ P
Sbjct: 229 -----LKDIGTLASLTNLTDLD---LANNQISNLAP 256
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 22/213 (10%)
Query: 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNV-----LILRSNIFYGIIKEPRTDC 325
P + KLE L L NQ+ + TL L V +R ++F G+ + +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152
Query: 326 GFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT--------TGIILSNNSFDSVIPAS 377
G + L+ + N F G L S++ I T + L N V AS
Sbjct: 153 GTNPLKSSGIENGAFQGMKKL-SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAAS 211
Query: 378 IANLKGXXXXXXXXXXXXGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437
+ L L N P+L L L+NNK ++P L + +++ +
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270
Query: 438 SDNHLTGL-----IPPG--KQFATFDNTSFDSN 463
+N+++ + PPG + A++ S SN
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 142 LDP--NMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIH 199
+DP N+ NLN L +S N ++ + L SSN + P+ T+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISAL-----SGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 200 YLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259
L +++ +I S + L LESL+ ++N +S + P + + DELS L GN
Sbjct: 177 RLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELS---LNGNQ---- 228
Query: 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
+K+ SL N + L+ L NNQIS+ P
Sbjct: 229 -----LKDIGTLASLTNLTDLD---LANNQISNLAP 256
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 83/201 (41%), Gaps = 20/201 (9%)
Query: 109 NLTKFPNFLQNQYHLLVLDLSDNR-IQGKVPK--W--LLD-PNMQNLNALNISHNFLTGF 162
NLTK P FL+ +++++ NR I G+ K W L D P + + + I +N L F
Sbjct: 261 NLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320
Query: 163 DQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLAS----NNSLTGEIPSWICNL 218
+ K L + N L+G LP G+ LAS N +T EIP+ C
Sbjct: 321 PVETSLQKXKK--LGXLECLYNQLEGKLPA--FGSEIKLASLNLAYNQIT-EIPANFCGF 375
Query: 219 -NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC 277
+E+L +HN L + S S +D N F P IN
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435
Query: 278 SKLEFLGLGNNQISDTFPSWL 298
S + L NNQIS FP L
Sbjct: 436 SS---INLSNNQIS-KFPKEL 452
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 23/156 (14%)
Query: 142 LDP--NMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIH 199
+DP N+ NLN L +S N ++ + L SSN + P+ T+
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISAL-----SGLTSLQQLSFSSNQVTDLKPLANLTTLE 176
Query: 200 YLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259
L +++ +I S + L LESL+ ++N +S + P + + DELS L GN
Sbjct: 177 RLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELS---LNGNQ---- 228
Query: 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295
+K+ SL N + L+ L NNQIS+ P
Sbjct: 229 -----LKDIGTLASLTNLTDLD---LANNQISNLAP 256
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 221 LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK-------ERRIPRS 273
L+ L LSHN +S L P +ELSV + N G IP+ + E R S
Sbjct: 65 LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG-IPSACLSRLFLDNNELRDTDS 123
Query: 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSN 312
LI+ LE L + NN++ LG L L VL L N
Sbjct: 124 LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 221 LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKL 280
L+++V N +LP+ + EL L GN F +P+ L N L
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPRDVTELY---LDGNQF-----------TLVPKELSNYKHL 56
Query: 281 EFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIF 340
+ L NN+IS + L LIL N I PRT G LR++ L N
Sbjct: 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI--PPRTFDGLKSLRLLSLHGND- 113
Query: 341 IGTLPLKSF 349
I +P +F
Sbjct: 114 ISVVPEGAF 122
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 48 QLFFLDLAKNSYR--GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGL 105
+L LDL N++ G+ L + L SW NL L L+ LS A KL+ IGL
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276
Query: 106 RSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFD 163
++ L QY+ + LD + K ++D M +L L ++ N + D
Sbjct: 277 QTLRL---------QYNEIELDAV------RTLKTVIDEKMPDLLFLELNGNRFSEED 319
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 48 QLFFLDLAKNSYR--GTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGL 105
+L LDL N++ G+ L + L SW NL L L+ LS A KL+ IGL
Sbjct: 216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 275
Query: 106 RSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFD 163
++ L QY+ + LD + K ++D M +L L ++ N + D
Sbjct: 276 QTLRL---------QYNEIELDAV------RTLKTVIDEKMPDLLFLELNGNRFSEED 318
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 24/102 (23%)
Query: 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPK- 139
L RLS +++ S L+Y+ L CNL + PN L L LDLS N + P
Sbjct: 169 ELKRLSYISEGAFEGLSN-LRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGS 226
Query: 140 ----------WLLDP-----------NMQNLNALNISHNFLT 160
W++ N+Q+L +N++HN LT
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 19/163 (11%)
Query: 113 FPNFLQNQY------------HLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160
F NF QN + L L L N ++ L+ NM +L L++S N L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 161 --GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNL 218
+D+ A +L +LSSN L G + P + L +N+ IP + +L
Sbjct: 417 SHAYDRTC----AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHL 472
Query: 219 NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIP 261
L+ L ++ N L +P + + L + L N + T P
Sbjct: 473 QALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 61/172 (35%), Gaps = 33/172 (19%)
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337
S FL N +D+ TL L LIL+ N K S L +D+S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 338 NIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGXXXXXXXXXXXXGH 397
N L+++++D + A + G
Sbjct: 413 N-------------------------SLNSHAYDR----TCAWAESILVLNLSSNMLTGS 443
Query: 398 IPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449
+ CL P ++ LDL NN+ IP+ + L L+ NV+ N L +P G
Sbjct: 444 VFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDG 491
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 148 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 113/266 (42%), Gaps = 48/266 (18%)
Query: 244 DELSVLDLQGN-----NFFGTIPNTFI---KERRIPRSLINCSKLEFLGLGNNQISD-TF 294
++L LDL+ N +F +IP+ F+ K +P+ IN + + L N++ +
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK--INLTA-NLIHLSENRLENLDI 418
Query: 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354
+L +P+L +LIL N F + +T L + L N+ L ++ LCW+
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQLFLGENML--QLAWETELCWDV 475
Query: 355 MKIVNTTGII-LSNNSFDSVIPASIANLKGXX--XXXXXXXXXXGHIPSCLGNLP-NLES 410
+ ++ ++ L++N +S+ P ++L H +LP NLE
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH-----NDLPANLEI 530
Query: 411 LDLSNNKFSGQIPQQLVEL-----------------TFLEFFNVSDNHLTGLIPPGKQFA 453
LD+S N+ P V L TF+ + N ++ + G PP +
Sbjct: 531 LDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAG--PPADIYC 588
Query: 454 TFDNTSFDSNSGLCGRPLS-KGCESD 478
+ DS SG+ LS +GC+ +
Sbjct: 589 VYP----DSFSGVSLFSLSTEGCDEE 610
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 148 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 148 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDL 335
+KL+ L L +NQISD P L L L L L N I + R CG L +++L
Sbjct: 151 TKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN----HISDLRALCGLKNLDVLEL 202
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 125 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP 168
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 125 LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|2X2Z|A Chain A, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|B Chain B, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|D Chain D, Crystal Structure Ama1 From Toxoplasma Gondii
pdb|2X2Z|E Chain E, Crystal Structure Ama1 From Toxoplasma Gondii
Length = 456
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 419 SGQIPQQLVEL-TFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLC 467
SG Q VE+ TF+E FN++ +H +G+ Q D T + +GLC
Sbjct: 5 SGNPFQANVEMKTFMERFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGLC 54
>pdb|2Y8T|A Chain A, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
pdb|2Y8T|D Chain D, Co-Structure Of Ama1 With A Surface Exposed Region Of Ron2
From Toxoplasma Gondii
Length = 432
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 419 SGQIPQQLVEL-TFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLC 467
SG Q VE+ TF+E FN++ +H +G+ Q D T + +GLC
Sbjct: 10 SGNPFQANVEMKTFMERFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGLC 59
>pdb|2Y8R|A Chain A, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|B Chain B, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|D Chain D, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|E Chain E, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8S|A Chain A, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
pdb|2Y8S|D Chain D, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
Length = 432
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 419 SGQIPQQLVEL-TFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLC 467
SG Q VE+ TF+E FN++ +H +G+ Q D T + +GLC
Sbjct: 10 SGNPFQANVEMKTFMERFNLTHHHQSGIYVDLGQDKEVDGTLYREPAGLC 59
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 150 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP 193
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272
S + L LESL+ ++N +S + P + + DELS L GN +K+
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELS---LNGNQ---------LKDIGTLA 240
Query: 273 SLINCSKLEFLGLGNNQISDTFP 295
SL N + L+ L NNQIS+ P
Sbjct: 241 SLTNLTDLD---LANNQISNLAP 260
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 128 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP 171
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447
L +LP LESL L NNK + L LT L+ ++ DN ++ ++P
Sbjct: 130 LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP 173
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272
S + L LESL+ ++N +S + P + + DELS L GN +K+
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILTNLDELS---LNGNQ---------LKDIGTLA 235
Query: 273 SLINCSKLEFLGLGNNQISDTFP 295
SL N + L+ L NNQIS+ P
Sbjct: 236 SLTNLTDLD---LANNQISNLAP 255
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272
S + L LESL+ ++N +S + P + + DELS L GN +K+
Sbjct: 192 SVLAKLTNLESLIATNNQISDITPLGILTNLDELS---LNGNQ---------LKDIGTLA 239
Query: 273 SLINCSKLEFLGLGNNQISDTFP 295
SL N + L+ L NNQIS+ P
Sbjct: 240 SLTNLTDLD---LANNQISNLAP 259
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 15/83 (18%)
Query: 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272
S + L LESL+ ++N +S + P + + DELS L GN +K+
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILTNLDELS---LNGNQ---------LKDIGTLA 235
Query: 273 SLINCSKLEFLGLGNNQISDTFP 295
SL N + L+ L NNQIS+ P
Sbjct: 236 SLTNLTDLD---LANNQISNLAP 255
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 32/130 (24%)
Query: 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305
L VL + GN+F +E +P L FL L Q+ P+ +L +L
Sbjct: 152 LEVLKMAGNSF---------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 306 VLILRSNIFYG---------------------IIKEPRTDCGF--SKLRIIDLSNNIFIG 342
VL + N F+ I+ + + S L ++L+ N F
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262
Query: 343 TLPLKSFLCW 352
T +SFL W
Sbjct: 263 TCEHQSFLQW 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,046,544
Number of Sequences: 62578
Number of extensions: 600974
Number of successful extensions: 1745
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1279
Number of HSP's gapped (non-prelim): 292
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)