Query 040238
Match_columns 549
No_of_seqs 362 out of 4225
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-53 4.7E-58 475.0 35.9 453 1-470 120-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.1E-51 9E-56 456.7 35.0 456 1-470 95-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.8E-41 1.5E-45 319.9 8.2 392 26-446 55-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.1E-40 6.6E-45 315.4 5.4 387 3-417 56-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.8E-38 4E-43 290.5 -18.0 431 2-464 71-539 (565)
6 KOG0444 Cytoskeletal regulator 100.0 1.1E-34 2.5E-39 279.5 -5.2 363 23-441 7-373 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 2.1E-35 4.6E-40 270.5 -11.0 443 2-477 48-529 (565)
8 KOG0618 Serine/threonine phosp 100.0 5.3E-33 1.1E-37 279.7 -3.5 397 1-443 47-465 (1081)
9 KOG0618 Serine/threonine phosp 100.0 4.3E-32 9.3E-37 273.2 -6.7 414 3-458 2-457 (1081)
10 KOG0444 Cytoskeletal regulator 100.0 7.6E-31 1.6E-35 253.2 -4.4 357 2-438 35-394 (1255)
11 PLN03210 Resistant to P. syrin 99.9 5.7E-23 1.2E-27 230.5 27.7 346 16-418 551-905 (1153)
12 KOG4237 Extracellular matrix p 99.9 8E-27 1.7E-31 214.1 -7.1 390 25-440 69-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 4.3E-22 9.3E-27 223.5 26.1 336 41-441 552-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 1.7E-21 3.7E-26 203.2 18.0 260 100-447 203-462 (788)
15 KOG4237 Extracellular matrix p 99.9 2.7E-23 5.9E-28 191.0 2.7 236 194-447 66-363 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 3.6E-21 7.8E-26 200.8 17.8 191 3-232 205-395 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 9.9E-19 2.2E-23 183.8 14.1 246 24-315 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.7E-18 3.6E-23 182.1 13.4 138 99-257 179-317 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.8E-19 1.5E-23 172.2 -0.5 283 3-313 2-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 8E-19 1.7E-23 171.7 -0.4 61 382-442 250-319 (319)
21 KOG0617 Ras suppressor protein 99.6 3.1E-18 6.7E-23 140.1 -4.5 179 217-443 31-212 (264)
22 KOG0617 Ras suppressor protein 99.6 7E-18 1.5E-22 138.0 -5.3 156 2-165 36-191 (264)
23 PLN03150 hypothetical protein; 99.6 2.3E-15 5E-20 158.0 11.5 117 360-476 420-538 (623)
24 KOG3207 Beta-tubulin folding c 99.3 2.1E-13 4.5E-18 128.2 -0.2 143 20-164 118-263 (505)
25 PLN03150 hypothetical protein; 99.2 2.7E-11 5.9E-16 127.5 10.5 113 329-447 419-532 (623)
26 KOG0532 Leucine-rich repeat (L 99.2 2.5E-13 5.4E-18 131.7 -4.8 192 75-313 77-271 (722)
27 PF14580 LRR_9: Leucine-rich r 99.2 1.6E-11 3.4E-16 105.7 3.2 128 18-155 14-148 (175)
28 KOG1909 Ran GTPase-activating 99.1 2.4E-12 5.3E-17 117.9 -3.7 141 18-161 25-199 (382)
29 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3E-15 116.8 7.2 183 215-447 112-294 (394)
30 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 115.7 0.2 89 96-187 119-210 (505)
31 KOG0532 Leucine-rich repeat (L 99.1 3.6E-12 7.8E-17 123.8 -5.2 197 20-254 72-270 (722)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.8E-10 3.8E-15 99.3 5.3 87 71-162 17-103 (175)
33 KOG1259 Nischarin, modulator o 99.0 3.9E-11 8.5E-16 107.6 0.1 110 215-341 303-412 (490)
34 KOG1909 Ran GTPase-activating 99.0 1.1E-11 2.5E-16 113.6 -3.5 242 176-443 32-311 (382)
35 COG4886 Leucine-rich repeat (L 99.0 1.1E-09 2.5E-14 110.2 10.0 111 217-345 184-294 (394)
36 PF13855 LRR_8: Leucine rich r 99.0 2.7E-10 5.8E-15 80.6 3.4 61 382-442 1-61 (61)
37 KOG1259 Nischarin, modulator o 99.0 8.6E-11 1.9E-15 105.5 1.0 131 278-446 284-415 (490)
38 PF13855 LRR_8: Leucine rich r 98.9 8.6E-10 1.9E-14 78.0 2.8 59 24-84 2-60 (61)
39 KOG0531 Protein phosphatase 1, 98.8 9.6E-10 2.1E-14 110.8 -0.1 153 21-188 70-222 (414)
40 KOG0531 Protein phosphatase 1, 98.7 2.2E-09 4.7E-14 108.3 0.9 124 176-316 74-200 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 7.9E-09 1.7E-13 111.5 5.1 293 23-337 523-828 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.7 2.1E-08 4.6E-13 108.2 5.0 312 2-338 526-856 (889)
43 KOG2982 Uncharacterized conser 98.6 8.9E-09 1.9E-13 92.7 -0.5 190 210-438 88-287 (418)
44 KOG2120 SCF ubiquitin ligase, 98.5 2.7E-09 5.8E-14 96.0 -6.0 178 24-208 186-376 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 2.2E-09 4.8E-14 96.5 -6.6 85 75-160 187-273 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 7E-09 1.5E-13 104.1 -5.1 128 97-232 163-292 (1096)
47 KOG2982 Uncharacterized conser 98.4 2.6E-08 5.6E-13 89.8 -1.3 111 23-134 45-159 (418)
48 KOG1859 Leucine-rich repeat pr 98.3 7.8E-09 1.7E-13 103.8 -8.4 122 4-134 169-292 (1096)
49 KOG4579 Leucine-rich repeat (L 98.2 4E-08 8.7E-13 78.2 -4.0 81 361-443 56-136 (177)
50 KOG1644 U2-associated snRNP A' 98.1 5.6E-06 1.2E-10 70.9 5.7 123 25-156 21-149 (233)
51 KOG4341 F-box protein containi 98.0 1.1E-07 2.3E-12 89.9 -6.2 104 24-130 139-251 (483)
52 KOG4579 Leucine-rich repeat (L 98.0 1.9E-07 4.2E-12 74.4 -3.8 127 3-134 31-159 (177)
53 PF12799 LRR_4: Leucine Rich r 98.0 4.3E-06 9.2E-11 53.9 2.8 36 383-419 2-37 (44)
54 COG5238 RNA1 Ran GTPase-activa 98.0 7E-07 1.5E-11 79.7 -1.2 226 216-445 27-287 (388)
55 COG5238 RNA1 Ran GTPase-activa 98.0 2.5E-06 5.5E-11 76.2 1.6 210 21-232 28-285 (388)
56 PRK15386 type III secretion pr 98.0 4E-05 8.6E-10 74.7 9.8 54 71-131 50-104 (426)
57 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 69.1 5.1 125 3-133 23-152 (233)
58 PRK15386 type III secretion pr 97.9 5.3E-05 1.2E-09 73.8 9.7 76 215-314 48-124 (426)
59 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 51.6 3.7 36 24-60 2-37 (44)
60 KOG4341 F-box protein containi 97.8 5.3E-07 1.2E-11 85.3 -5.3 116 217-340 292-413 (483)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.4E-05 3.1E-10 84.4 2.5 135 23-161 122-264 (699)
62 KOG3665 ZYG-1-like serine/thre 97.7 6.8E-06 1.5E-10 86.8 -0.3 35 96-131 171-205 (699)
63 KOG2739 Leucine-rich acidic nu 97.6 4.6E-05 1E-09 68.3 2.7 86 45-134 41-129 (260)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00061 1.3E-08 56.4 6.9 123 16-149 5-128 (129)
65 PF13306 LRR_5: Leucine rich r 97.3 0.00062 1.3E-08 56.4 6.0 60 274-337 8-67 (129)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00019 4.1E-09 64.5 1.0 113 15-131 35-153 (260)
67 KOG2123 Uncharacterized conser 96.9 4.7E-05 1E-09 68.6 -4.2 101 46-153 18-123 (388)
68 KOG2123 Uncharacterized conser 96.7 5.1E-05 1.1E-09 68.3 -5.6 100 22-127 18-123 (388)
69 PF00560 LRR_1: Leucine Rich R 95.6 0.0042 9.2E-08 33.1 0.6 20 1-21 2-21 (22)
70 KOG1947 Leucine rich repeat pr 95.4 0.0026 5.5E-08 66.1 -1.6 113 21-133 186-307 (482)
71 KOG1947 Leucine rich repeat pr 95.3 0.0018 3.9E-08 67.2 -3.0 38 218-255 242-280 (482)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0073 1.6E-07 32.2 0.6 11 385-395 3-13 (22)
73 PF13504 LRR_7: Leucine rich r 93.8 0.042 9E-07 27.1 1.4 12 100-111 3-14 (17)
74 KOG4308 LRR-containing protein 93.7 0.00037 8.1E-09 70.6 -12.0 88 221-314 89-184 (478)
75 KOG4308 LRR-containing protein 93.7 0.00067 1.5E-08 68.8 -10.3 176 213-420 109-304 (478)
76 smart00370 LRR Leucine-rich re 90.9 0.2 4.2E-06 27.8 1.9 14 382-395 2-15 (26)
77 smart00369 LRR_TYP Leucine-ric 90.9 0.2 4.2E-06 27.8 1.9 14 382-395 2-15 (26)
78 KOG4242 Predicted myosin-I-bin 90.8 0.94 2E-05 44.8 7.5 68 121-192 165-232 (553)
79 smart00369 LRR_TYP Leucine-ric 90.7 0.18 4E-06 27.9 1.6 17 405-421 1-17 (26)
80 smart00370 LRR Leucine-rich re 90.7 0.18 4E-06 27.9 1.6 17 405-421 1-17 (26)
81 KOG0473 Leucine-rich repeat pr 90.1 0.01 2.2E-07 52.5 -5.7 80 361-443 45-124 (326)
82 KOG0473 Leucine-rich repeat pr 87.9 0.011 2.4E-07 52.3 -7.0 101 4-110 23-123 (326)
83 KOG3864 Uncharacterized conser 86.0 0.13 2.9E-06 44.7 -1.4 61 279-339 102-162 (221)
84 PF13516 LRR_6: Leucine Rich r 84.3 0.26 5.7E-06 26.7 -0.3 14 23-36 2-15 (24)
85 PF08374 Protocadherin: Protoc 83.8 1.3 2.8E-05 38.9 3.5 23 500-522 35-57 (221)
86 KOG3864 Uncharacterized conser 83.6 0.15 3.2E-06 44.5 -2.2 79 48-130 102-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 80.4 1.8 3.9E-05 24.1 2.1 15 74-88 3-17 (26)
88 TIGR00864 PCC polycystin catio 76.3 1.7 3.7E-05 52.7 2.5 37 412-448 1-37 (2740)
89 KOG4242 Predicted myosin-I-bin 76.0 7.6 0.00016 38.8 6.3 62 195-257 413-481 (553)
90 smart00364 LRR_BAC Leucine-ric 75.8 2 4.3E-05 23.8 1.4 18 98-115 2-19 (26)
91 KOG3763 mRNA export factor TAP 75.7 1.5 3.3E-05 44.4 1.6 68 69-136 214-285 (585)
92 PF02439 Adeno_E3_CR2: Adenovi 74.3 4.6 9.9E-05 24.6 2.7 15 507-521 7-21 (38)
93 PF15050 SCIMP: SCIMP protein 73.3 3.3 7.2E-05 32.4 2.5 27 514-541 19-45 (133)
94 COG3216 Uncharacterized protei 72.4 4.2 9.2E-05 34.5 3.2 42 500-541 134-175 (184)
95 PF01102 Glycophorin_A: Glycop 70.2 5.5 0.00012 32.0 3.3 16 506-521 67-82 (122)
96 PF06305 DUF1049: Protein of u 70.0 7.8 0.00017 27.4 3.8 10 511-520 27-36 (68)
97 KOG3763 mRNA export factor TAP 68.8 2.4 5.1E-05 43.1 1.2 15 431-445 271-285 (585)
98 PF02439 Adeno_E3_CR2: Adenovi 65.9 6.7 0.00015 23.9 2.2 22 510-531 6-27 (38)
99 smart00368 LRR_RI Leucine rich 65.8 5 0.00011 22.7 1.7 14 406-419 2-15 (28)
100 PF06305 DUF1049: Protein of u 62.7 17 0.00036 25.7 4.4 13 510-522 22-34 (68)
101 PF01708 Gemini_mov: Geminivir 59.0 5.5 0.00012 29.5 1.2 25 522-546 50-74 (91)
102 PF05393 Hum_adeno_E3A: Human 58.3 11 0.00023 27.8 2.6 10 532-541 53-62 (94)
103 PF01102 Glycophorin_A: Glycop 57.1 7.1 0.00015 31.4 1.7 26 506-531 63-88 (122)
104 PF04478 Mid2: Mid2 like cell 54.1 12 0.00025 31.2 2.5 16 503-518 49-64 (154)
105 PF05795 Plasmodium_Vir: Plasm 50.9 16 0.00034 36.0 3.5 8 534-541 304-311 (354)
106 TIGR00985 3a0801s04tom mitocho 49.3 14 0.00029 30.9 2.2 18 507-524 10-27 (148)
107 PF03302 VSP: Giardia variant- 48.9 11 0.00023 37.8 1.9 23 500-522 366-388 (397)
108 PF07219 HemY_N: HemY protein 48.0 24 0.00053 27.8 3.5 10 537-546 47-56 (108)
109 PF12259 DUF3609: Protein of u 45.9 16 0.00034 36.0 2.4 14 528-541 317-330 (361)
110 PF13260 DUF4051: Protein of u 44.2 73 0.0016 20.5 4.3 25 514-538 9-33 (54)
111 PF06072 Herpes_US9: Alphaherp 44.0 18 0.00039 24.5 1.7 15 530-544 14-28 (60)
112 PF04971 Lysis_S: Lysis protei 44.0 21 0.00047 25.0 2.2 13 505-517 35-47 (68)
113 PF15179 Myc_target_1: Myc tar 42.3 14 0.00029 31.6 1.2 32 500-532 17-48 (197)
114 smart00367 LRR_CC Leucine-rich 40.1 21 0.00045 19.5 1.4 12 406-417 2-13 (26)
115 PF01034 Syndecan: Syndecan do 40.0 9.5 0.00021 26.4 -0.0 12 506-517 12-23 (64)
116 PRK09459 pspG phage shock prot 38.6 24 0.00052 25.3 1.8 11 527-537 57-67 (76)
117 COG1862 YajC Preprotein transl 37.5 49 0.0011 25.4 3.5 13 534-546 26-38 (97)
118 PF05399 EVI2A: Ectropic viral 37.4 38 0.00083 29.8 3.2 26 514-539 141-166 (227)
119 COG3071 HemY Uncharacterized e 36.9 49 0.0011 32.4 4.2 7 535-541 73-79 (400)
120 PF02480 Herpes_gE: Alphaherpe 36.1 12 0.00026 37.9 0.0 9 529-537 373-381 (439)
121 PRK00523 hypothetical protein; 34.8 41 0.00089 24.0 2.5 15 521-535 21-35 (72)
122 PRK01844 hypothetical protein; 33.6 46 0.001 23.7 2.6 15 522-536 21-35 (72)
123 COG1380 Putative effector of m 33.4 65 0.0014 26.3 3.8 30 518-547 98-127 (128)
124 PF04478 Mid2: Mid2 like cell 33.3 7 0.00015 32.5 -1.7 25 500-524 50-74 (154)
125 PF02064 MAS20: MAS20 protein 32.9 14 0.00031 29.7 0.0 11 514-524 7-17 (121)
126 PF08374 Protocadherin: Protoc 32.4 47 0.001 29.5 3.0 24 500-523 38-61 (221)
127 PF14017 DUF4233: Protein of u 31.8 67 0.0014 25.3 3.5 20 525-544 87-106 (107)
128 PF15179 Myc_target_1: Myc tar 31.4 19 0.00041 30.8 0.5 40 505-544 26-65 (197)
129 KOG4752 Ribosomal protein L41 28.8 72 0.0016 16.9 2.1 8 529-536 5-12 (26)
130 COG3898 Uncharacterized membra 28.1 62 0.0013 31.8 3.3 12 519-530 54-65 (531)
131 PF03672 UPF0154: Uncharacteri 27.6 83 0.0018 22.0 2.9 10 526-535 18-27 (64)
132 TIGR00739 yajC preprotein tran 27.0 87 0.0019 23.4 3.3 7 537-543 23-29 (84)
133 PF04689 S1FA: DNA binding pro 26.9 89 0.0019 21.6 2.9 9 502-510 14-22 (69)
134 PF06697 DUF1191: Protein of u 26.7 82 0.0018 29.5 3.7 12 504-515 215-226 (278)
135 PF04277 OAD_gamma: Oxaloaceta 26.4 52 0.0011 24.0 2.0 23 508-530 10-32 (79)
136 PF07204 Orthoreo_P10: Orthore 26.1 72 0.0016 24.1 2.6 24 500-525 41-64 (98)
137 TIGR00864 PCC polycystin catio 25.4 45 0.00098 41.5 2.2 32 364-395 1-32 (2740)
138 PF12297 EVC2_like: Ellis van 24.7 42 0.00092 33.1 1.6 26 500-525 62-87 (429)
139 PF10873 DUF2668: Protein of u 24.5 60 0.0013 26.7 2.1 13 504-516 62-74 (155)
140 COG3216 Uncharacterized protei 24.5 1.3E+02 0.0028 25.9 4.1 37 508-544 138-174 (184)
141 PF11980 DUF3481: Domain of un 23.8 46 0.00099 24.5 1.2 19 500-518 15-33 (87)
142 TIGR00540 hemY_coli hemY prote 23.6 84 0.0018 31.7 3.6 11 535-545 70-80 (409)
143 PF10954 DUF2755: Protein of u 23.2 1.5E+02 0.0032 22.1 3.7 14 504-517 65-78 (100)
144 TIGR03546 conserved hypothetic 22.8 1.4E+02 0.0031 25.2 4.2 35 508-543 110-144 (154)
145 COG3105 Uncharacterized protei 22.7 23 0.00049 28.4 -0.5 17 500-516 7-23 (138)
146 COG3114 CcmD Heme exporter pro 22.6 2.2E+02 0.0048 19.8 4.2 12 525-536 39-50 (67)
147 PRK11677 hypothetical protein; 22.2 26 0.00056 28.8 -0.3 17 501-517 3-19 (134)
148 PTZ00046 rifin; Provisional 22.1 95 0.0021 30.3 3.3 8 529-536 335-342 (358)
149 PF09435 DUF2015: Fungal prote 22.1 99 0.0021 25.0 2.9 24 513-536 10-33 (128)
150 PF07950 DUF1691: Protein of u 22.0 1.5E+02 0.0033 23.4 4.0 15 530-544 61-75 (110)
151 PF06667 PspB: Phage shock pro 21.8 99 0.0021 22.5 2.6 13 526-538 18-30 (75)
152 TIGR01477 RIFIN variant surfac 21.6 99 0.0022 30.0 3.3 8 529-536 330-337 (353)
153 PRK13415 flagella biosynthesis 21.5 1.5E+02 0.0033 26.6 4.2 27 510-536 69-95 (219)
154 PRK10747 putative protoheme IX 21.0 98 0.0021 31.1 3.5 7 537-543 72-78 (398)
155 PF07213 DAP10: DAP10 membrane 20.8 1.1E+02 0.0025 22.3 2.7 19 506-524 33-51 (79)
156 KOG3607 Meltrins, fertilins an 20.5 1.5E+02 0.0033 32.2 4.9 19 464-482 635-653 (716)
157 PRK09458 pspB phage shock prot 20.3 96 0.0021 22.5 2.2 17 524-540 16-32 (75)
158 PF01708 Gemini_mov: Geminivir 20.2 1.2E+02 0.0027 22.7 2.8 39 500-539 33-71 (91)
159 TIGR02976 phageshock_pspB phag 20.2 1.1E+02 0.0025 22.2 2.6 14 526-539 18-31 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-53 Score=475.01 Aligned_cols=453 Identities=33% Similarity=0.501 Sum_probs=295.2
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
||+|+|++|.+++.+|. ..+++|++|+|++|.+.+..|..++++++|++|++++|.+.+..|.. +.++++|++|++
T Consensus 120 L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L 195 (968)
T PLN00113 120 LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS--LTNLTSLEFLTL 195 (968)
T ss_pred CCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh--hhhCcCCCeeec
Confidence 56677777766665553 34566666666666666666666666666666666666666666655 566666666666
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++|.+........ ..+.+|++|++++|.+ ..+|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus 196 ~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l 272 (968)
T PLN00113 196 ASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKL 272 (968)
T ss_pred cCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCee
Confidence 6664432211111 1456666666666666 35566666666666666666666666666665 666666666666665
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 236 (549)
.+..+.. ..... +|+.|++++|.+.+.+|.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 273 ~~~~p~~-l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 273 SGPIPPS-IFSLQ--KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred eccCchh-Hhhcc--CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 5443331 11122 2666666666655555432 4555556666665555555555555566666666555555555
Q ss_pred cchhcCCCCCCeeecCCCccCCcCCCcccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCC
Q 040238 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP 302 (549)
Q Consensus 237 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 302 (549)
..+.... +|+.|++++|.+++..|..+.. .+.+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 350 ~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 350 KNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred hHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 5444433 4555555555555544443322 122344445555555555555555554554455555
Q ss_pred CCCEEEccCcccccccCCCC---------------------CccCCCCCceeeCCCCccccccChhhhhccccccccccc
Q 040238 303 NLNVLILRSNIFYGIIKEPR---------------------TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTT 361 (549)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~~---------------------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~ 361 (549)
+|+.|++++|.+.+..+... .....++|+.|++++|++.+.+|. .+..++.+ +
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L-----~ 502 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR-KLGSLSEL-----M 502 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh-hhhhhhcc-----C
Confidence 55555555554444332211 001335666677777766666553 35555555 8
Q ss_pred eEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCc
Q 040238 362 GIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNH 441 (549)
Q Consensus 362 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 441 (549)
.|++++|.+.+.+|+.+..+++|++|++++|.+++.+|..|..+++|+.|++++|++++.+|..+.++++|+.|++++|+
T Consensus 503 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 442 LTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 442 l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+.+.+|...++..+....+.||+.+|+.+
T Consensus 583 l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 583 LHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999888999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-51 Score=456.65 Aligned_cols=456 Identities=30% Similarity=0.406 Sum_probs=390.6
Q ss_pred CcEEECCCCCCCCccccccc-CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEe
Q 040238 1 LQFLYLRLNNFSGDLLGSIG-NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLA 79 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~ 79 (549)
|++|+|++|.+++.+|..+. ++++|++|+|++|++.+..|. +.+++|++|++++|.+.+..|.. +.++++|++|+
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~ 170 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLD 170 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH--HhcCCCCCEEE
Confidence 68999999999988887654 999999999999999887764 56899999999999999888888 89999999999
Q ss_pred ccCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc
Q 040238 80 LSLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158 (549)
Q Consensus 80 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 158 (549)
+++|.+........ .++++|++|++++|.+ ..+|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 171 L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~ 247 (968)
T PLN00113 171 LGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNN 247 (968)
T ss_pred CccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCce
Confidence 99997653322222 2689999999999998 57899999999999999999999999999998 99999999999999
Q ss_pred CCCCCCccccccCCCCCccEEEccCCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcC
Q 040238 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 235 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 235 (549)
+.+..+.. ..... +|+.|++++|.+.+..|.. +++|++|++++|.+.+.+|.++..+++|++|++++|.+.+..
T Consensus 248 l~~~~p~~-l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 248 LTGPIPSS-LGNLK--NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred eccccChh-HhCCC--CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 88766552 33333 4999999999999888765 789999999999999999999999999999999999999888
Q ss_pred CcchhcCCCCCCeeecCCCccCCcCCCcccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCcccCCC
Q 040238 236 PQCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL 301 (549)
Q Consensus 236 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 301 (549)
|..+..+. +|+.|++++|.+++..|..+.. .+.+|.++..+++|+.|++++|.+.+..|..+..+
T Consensus 325 ~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 325 PVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred ChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 88887665 8999999999999888876643 23456777778889999999999988889899999
Q ss_pred CCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccc------------------ccceE
Q 040238 302 PNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIV------------------NTTGI 363 (549)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~------------------~l~~L 363 (549)
++|+.|++++|.+.+..+..+ ..+++|+.|++++|++.+.+|.. +..+++|+.+ +++.|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L 480 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL 480 (968)
T ss_pred CCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEE
Confidence 999999999999998876655 78889999999999888776643 3334433322 35789
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
++++|++++..|..|..+++|++|++++|.+.+.+|+.+..+++|+.|+|++|.+++.+|..|..+++|+.|++++|+++
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-CCCCccCCCccCCCCCCCCCC
Q 040238 444 GLIPPG-KQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 444 ~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+.+|.. ..+..+..+.+.+|+..+.-|
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCC
Confidence 988864 345566667777776655333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-41 Score=319.86 Aligned_cols=392 Identities=22% Similarity=0.187 Sum_probs=175.8
Q ss_pred CEEEccCCcCCccccccccCCC--CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 26 EAIHIAKCNVSGQITSSLRNLS--QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 26 ~~L~Ls~n~~~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
+.|+.+++.+..+....+.+.- .-+.||+++|.+....+.. |.++++|+.+++.+|.++.++..... ..+|++|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~--f~nl~nLq~v~l~~N~Lt~IP~f~~~--sghl~~L 130 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEF--FYNLPNLQEVNLNKNELTRIPRFGHE--SGHLEKL 130 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHH--HhcCCcceeeeeccchhhhccccccc--ccceeEE
Confidence 4455555555443333333321 2233555555555333322 55555555555555555555443322 2345555
Q ss_pred EccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEcc
Q 040238 104 GLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLS 182 (549)
Q Consensus 104 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~ 182 (549)
+|.+|.|.++.. .+..++.|+.|||+.|.++......|. .-.++++|+|++|+|+.+....|.. .+. |..|.|+
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~-lns--L~tlkLs 205 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDS-LNS--LLTLKLS 205 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC--CCCCceEEeeccccccccccccccc-cch--heeeecc
Confidence 555555544442 455555555555555555533333333 3345555555555555544442221 111 3333443
Q ss_pred CCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 183 SNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 183 ~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
+|+++...+.. +++|+.|++..|.+...--..|.++++|+.|.|..|.+. .+.+..+..+.++++|+|+.|+++..
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhh
Confidence 33333111000 122222222222222221233445555555555555554 22333222333455555555555433
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
-.+ |+-+++.|+.|++++|.|...-++.....++|++|+|+.|+++...+..+ ..+..|+.|.+++|.
T Consensus 285 n~g----------~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 285 NEG----------WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--RVLSQLEELNLSHNS 352 (873)
T ss_pred hcc----------cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH--HHHHHhhhhcccccc
Confidence 222 22344555555555555544444444444555555555555544443333 444455555555554
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccC---chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCC
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI---PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 416 (549)
+. .+...+|.++++| +.|||++|.+...+ ...|.++++|+.|++.+|++..+...+|.++++||+|||.+|
T Consensus 353 i~-~l~e~af~~lssL-----~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 353 ID-HLAEGAFVGLSSL-----HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hH-HHHhhHHHHhhhh-----hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 33 3344444444444 44444444443322 223444555555555555554333344555555555555555
Q ss_pred cccccCCcCccCCCCCcEEecccCcCcccC
Q 040238 417 KFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446 (549)
Q Consensus 417 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 446 (549)
.|..+.|+.|..+ .|++|-+..-.|.|.|
T Consensus 427 aiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 427 AIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred cceeecccccccc-hhhhhhhcccceEEec
Confidence 5554445555554 4544444444443333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-40 Score=315.41 Aligned_cols=387 Identities=20% Similarity=0.200 Sum_probs=317.2
Q ss_pred EEECCCCCCCCcccccccCC--CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 3 FLYLRLNNFSGDLLGSIGNL--RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
.||.+++.+..+--..+..+ +.-++|++++|.+....+..|.++++|+.+++.+|.++ .+|.- .....+|+.|+|
T Consensus 56 lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f--~~~sghl~~L~L 132 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF--GHESGHLEKLDL 132 (873)
T ss_pred eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc--cccccceeEEee
Confidence 57777777654322223222 23566899999888888888888999999999888887 66654 455566888999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
.+|.|+.+...... .++.|+.|||+.|.++++|. .|..-.++++|+|++|.++......|. .+.+|..|.|++|++
T Consensus 133 ~~N~I~sv~se~L~-~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 133 RHNLISSVTSEELS-ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRI 209 (873)
T ss_pred eccccccccHHHHH-hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc--ccchheeeecccCcc
Confidence 99888887776554 57888889999988888875 566667889999999998887788887 788888899999998
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCC---CCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGP---LPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 236 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 236 (549)
+..+...| ..... |+.|+|..|++.-. ....+++|+.+.+..|.+...-...|.+|.++++|+|+.|++...-.
T Consensus 210 ttLp~r~F-k~L~~--L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 210 TTLPQRSF-KRLPK--LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cccCHHHh-hhcch--hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 88877643 22333 88889998887643 34458889999999999988777889999999999999999997777
Q ss_pred cchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccc
Q 040238 237 QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYG 316 (549)
Q Consensus 237 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 316 (549)
.+++++. .|+.|++++|.|....+++ +.-+++|++|+|++|+++...++.|..+..|++|+|++|++..
T Consensus 287 g~lfgLt-~L~~L~lS~NaI~rih~d~----------WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 287 GWLFGLT-SLEQLDLSYNAIQRIHIDS----------WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred ccccccc-hhhhhccchhhhheeecch----------hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 7777766 8999999999998766544 3678999999999999998888999999999999999999998
Q ss_pred ccCCCCCccCCCCCceeeCCCCccccccCh--hhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCcc
Q 040238 317 IIKEPRTDCGFSKLRIIDLSNNIFIGTLPL--KSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSL 394 (549)
Q Consensus 317 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~--~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 394 (549)
+....+ ..+++|+.||+++|.++..+.. ..|.++++| +.|++.+|++..+.-.+|.++.+|++|||.+|.|
T Consensus 356 l~e~af--~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L-----rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 356 LAEGAF--VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL-----RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred HHhhHH--HHhhhhhhhcCcCCeEEEEEecchhhhccchhh-----hheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 866655 8899999999999999876663 457778888 9999999999988888999999999999999999
Q ss_pred ccCCCcccCCCCCCCEeeCCCCc
Q 040238 395 QGHIPSCLGNLPNLESLDLSNNK 417 (549)
Q Consensus 395 ~~~~~~~~~~l~~L~~L~l~~n~ 417 (549)
..+-|++|..+ .|++|.+..-.
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred eeecccccccc-hhhhhhhcccc
Confidence 98999999998 99999775433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-38 Score=290.55 Aligned_cols=431 Identities=24% Similarity=0.323 Sum_probs=235.4
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
.+|++++|+++ ..|++++.+..++.|+.++|+++ ..|+.+..+..|.++++++|.+. ..+.+ ++.+..|+.++..
T Consensus 71 ~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~--i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 71 TVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDS--IGRLLDLEDLDAT 145 (565)
T ss_pred eEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCch--HHHHhhhhhhhcc
Confidence 45555555555 44445556666666666666555 34555666666666666666665 45555 5566666666666
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|+++..+...+ .+.+|..+++.+|++.++|+...+++.|++||...|-+. .+|..++ .+.+|.-|++..|++..
T Consensus 146 ~N~i~slp~~~~--~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg--~l~~L~~LyL~~Nki~~ 220 (565)
T KOG0472|consen 146 NNQISSLPEDMV--NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELG--GLESLELLYLRRNKIRF 220 (565)
T ss_pred ccccccCchHHH--HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhc--chhhhHHHHhhhccccc
Confidence 666665555433 345566666666666666655555666666666666654 5566665 66666666666666665
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCCC----CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCc
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLPV----PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 237 (549)
.+. +..+.. |+++.++.|++.- +|. .++++..||+..|++. +.|+.+.-+.+|++||+|+|.++ .+|.
T Consensus 221 lPe---f~gcs~--L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 221 LPE---FPGCSL--LKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred CCC---CCccHH--HHHHHhcccHHHh-hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCc
Confidence 542 122333 6666666666542 222 2677788888888887 67888888888999999999888 6777
Q ss_pred chhcCCCCCCeeecCCCccCCcCCCcccc---------------------------cCCCCc----cccCCCCCcEEEcc
Q 040238 238 CLGNSSDELSVLDLQGNNFFGTIPNTFIK---------------------------ERRIPR----SLINCSKLEFLGLG 286 (549)
Q Consensus 238 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---------------------------~~~l~~----~l~~~~~L~~L~l~ 286 (549)
.++.+ .|+.|.+.||.+.+.-.+.+.. ....|. ....+.+.+.|+++
T Consensus 293 sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 293 SLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred ccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 77776 5888888888765321111110 001111 11224466778888
Q ss_pred CCcCCCCcCcccCCCC--CCCEEEccCcccccccCCCCCccCCCCC-ceeeCCCCccccccChhhhhccccccccccceE
Q 040238 287 NNQISDTFPSWLGTLP--NLNVLILRSNIFYGIIKEPRTDCGFSKL-RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGI 363 (549)
Q Consensus 287 ~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~l~~L-~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L 363 (549)
+-+++....+.|..-. -.+..+++.|++...+... ..+..+ ..+++++|.+ .+++..+..++.+ ..|
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L---~~lkelvT~l~lsnn~i--sfv~~~l~~l~kL-----t~L 440 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL---VELKELVTDLVLSNNKI--SFVPLELSQLQKL-----TFL 440 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh---HHHHHHHHHHHhhcCcc--ccchHHHHhhhcc-----eee
Confidence 8777754444333211 2567778887775543221 112222 1233333332 1222334444444 555
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
+|++|-+. .+|..++.+..|++|+++.|++. .+|.++..+..++.+-.++|++....|+.+.++.+|.+||+.+|.+.
T Consensus 441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 55544443 34444555555555555555554 44444444444444444444444333344444444444444444444
Q ss_pred ccCCCCCCCCccCCCccCCCC
Q 040238 444 GLIPPGKQFATFDNTSFDSNS 464 (549)
Q Consensus 444 ~~~p~~~~~~~~~~~~~~~n~ 464 (549)
...|..+....+..+.+.|||
T Consensus 519 ~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hCChhhccccceeEEEecCCc
Confidence 333333334444444444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-34 Score=279.49 Aligned_cols=363 Identities=26% Similarity=0.377 Sum_probs=206.7
Q ss_pred CCCCEEEccCCcCC-ccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCC
Q 040238 23 RSLEAIHIAKCNVS-GQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLK 101 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 101 (549)
+-.|-.|+++|.++ +..|..+..++.++.|.|...++. .+|.. ++.+.+|++|.+++|++..+..... .++.|+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE--L~~lqkLEHLs~~HN~L~~vhGELs--~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE--LSRLQKLEHLSMAHNQLISVHGELS--DLPRLR 81 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH--HHHHhhhhhhhhhhhhhHhhhhhhc--cchhhH
Confidence 34444555555554 334555555555555555555444 44444 4555555555555554333322211 245555
Q ss_pred EEEccCCCC--CCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 102 YIGLRSCNL--TKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 102 ~L~l~~n~l--~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
.+.+++|++ ..+|..+..+..|+.|||++|++. ..|..+. .-.++-.|+|++|+|.+++...++ .... |-.|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE--~AKn~iVLNLS~N~IetIPn~lfi-nLtD--LLfL 155 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE--YAKNSIVLNLSYNNIETIPNSLFI-NLTD--LLFL 155 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh--hhcCcEEEEcccCccccCCchHHH-hhHh--Hhhh
Confidence 555555555 456666666666666666666665 5555554 455566666666666665555332 2222 5555
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
||++|.+. .+|..+..+..|++|+|++|.+.-..-..+..+. +|+.|++++.+-+-
T Consensus 156 DLS~NrLe----------------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt-sL~vLhms~TqRTl- 211 (1255)
T KOG0444|consen 156 DLSNNRLE----------------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT-SLSVLHMSNTQRTL- 211 (1255)
T ss_pred ccccchhh----------------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch-hhhhhhcccccchh-
Confidence 66655554 5666777888888888888876522112222222 67888888765432
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
..+|..+..+.+|..+|+|.|.+. ..|+.+..+++|+.|+|++|.++...... ..-.+|++|++|.|+
T Consensus 212 --------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~---~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 212 --------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE---GEWENLETLNLSRNQ 279 (1255)
T ss_pred --------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH---HHHhhhhhhccccch
Confidence 245677788889999999999887 67888888899999999999887653221 234466666666666
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcc-cCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS-VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 418 (549)
++ .+| +++..++.| +.|.+.+|.++- -+|..++.+..|+.+..++|.+. ..|+.+..+++|+.|.|+.|++
T Consensus 280 Lt-~LP-~avcKL~kL-----~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 280 LT-VLP-DAVCKLTKL-----TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hc-cch-HHHhhhHHH-----HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 54 233 223444444 444444444421 24444555555555555555554 5555555555555555555555
Q ss_pred cccCCcCccCCCCCcEEecccCc
Q 040238 419 SGQIPQQLVELTFLEFFNVSDNH 441 (549)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~N~ 441 (549)
. .+|+.+.-++.|+.||+..|+
T Consensus 352 i-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 352 I-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred e-echhhhhhcCCcceeeccCCc
Confidence 4 445555555555555555553
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.1e-35 Score=270.54 Aligned_cols=443 Identities=24% Similarity=0.305 Sum_probs=255.5
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.|++++|.++ .+.+.+.++..|.+|++++|++.. .|.+++.+..++.++.++|++. .+|.. +..+..|+.++++
T Consensus 48 ~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~--i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 48 QKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQ--IGSLISLVKLDCS 122 (565)
T ss_pred hhhhhccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHH--Hhhhhhhhhhhcc
Confidence 45666777665 444456677777777777777663 4556677777777777777776 66666 6677777777777
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.+..+++..+ .+..|+.++..+|+++++|+.+..+.++..+++.+|.+....|. .. +++.|++|+...|.+..
T Consensus 123 ~n~~~el~~~i~--~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i--~m~~L~~ld~~~N~L~t 197 (565)
T KOG0472|consen 123 SNELKELPDSIG--RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPEN-HI--AMKRLKHLDCNSNLLET 197 (565)
T ss_pred ccceeecCchHH--HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHH-HH--HHHHHHhcccchhhhhc
Confidence 775555544332 35567777777777777777777777777777777777633333 33 56777777777777766
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCC-CCCCCcceeecccCCCCCcCchhhh-cCCCCCeEeCcCCcCCCcCCcch
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLP-VPPPGTIHYLASNNSLTGEIPSWIC-NLNILESLVLSHNNLSGLLPQCL 239 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~ 239 (549)
+++... .... |..|++..|.+..... ..++.|++++++.|.+. .+|.... .++.+..||+..|+++ +.|+.+
T Consensus 198 lP~~lg--~l~~--L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 198 LPPELG--GLES--LELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred CChhhc--chhh--hHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence 666522 2222 5666666666552211 12445555555555554 2233322 4555555555555555 445544
Q ss_pred hcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCC--CCCCEEEc--cCccc-
Q 040238 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL--PNLNVLIL--RSNIF- 314 (549)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L--~~n~l- 314 (549)
.-+. +|++||+++|.+++ +|-.++++ .|+.|-+.+|.+...-.+.++.- .-|++|.= ..-.+
T Consensus 272 clLr-sL~rLDlSNN~is~-----------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 272 CLLR-SLERLDLSNNDISS-----------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred HHhh-hhhhhcccCCcccc-----------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCC
Confidence 4332 45555555555542 23334455 55555555554432100000000 00000000 00000
Q ss_pred --ccc-------cCCCC-CccCCCCCceeeCCCCccccccChhhhhcccc--ccccc-------------------cceE
Q 040238 315 --YGI-------IKEPR-TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA--MKIVN-------------------TTGI 363 (549)
Q Consensus 315 --~~~-------~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~--l~~~~-------------------l~~L 363 (549)
.+. .+..+ ......+.+.|++++-+++ .+|.+.|..-.. ....+ .+.+
T Consensus 339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l 417 (565)
T KOG0472|consen 339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL 417 (565)
T ss_pred CCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence 000 00000 0113345566666666654 566666544321 10000 0334
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
.+++|.+. -+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|++. .+|.....+..++.+-.++|++.
T Consensus 418 ~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 418 VLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred HhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 44444443 56777889999999999999998 88888999999999999999998 88888888888898889999998
Q ss_pred ccCCCC-CCCCccCCCccCCCCCCCCCCCCCCCCC
Q 040238 444 GLIPPG-KQFATFDNTSFDSNSGLCGRPLSKGCES 477 (549)
Q Consensus 444 ~~~p~~-~~~~~~~~~~~~~n~~lc~~~~~~~c~~ 477 (549)
..-|++ .....+..+....|....-+|.-..|..
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTN 529 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChhhccccc
Confidence 766652 3344555556666654444454445543
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.3e-33 Score=279.73 Aligned_cols=397 Identities=26% Similarity=0.337 Sum_probs=210.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|+.||+++|.+. .+|..+..+++|+.|.++.|.|.. .|....++.+|++|.|.+|.++ ..|.. +..+++|++||+
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~--~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPAS--ISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchh--HHhhhccccccc
Confidence 345566666554 455555555666666666655542 3345555556666666665555 55555 555666666666
Q ss_pred cCCccceeeccCCCcCCCCC-------------------CEEEccCCCC-CCCChhhcCCCCccEEEeecCcCCCCCCcc
Q 040238 81 SLNRLSVLTKATSNTTSQKL-------------------KYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQGKVPKW 140 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L-------------------~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~ 140 (549)
+.|++..++..... +..+ +++++..|.+ ..++..+..+++ .|++++|.+. . -.
T Consensus 122 S~N~f~~~Pl~i~~--lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~d 194 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEV--LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LD 194 (1081)
T ss_pred chhccCCCchhHHh--hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hh
Confidence 66555444333211 2222 2222222222 222222222222 2444444432 1 01
Q ss_pred cccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCC-CCCcceeecccCCCCCcCchhhhcCC
Q 040238 141 LLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP-PPGTIHYLASNNSLTGEIPSWICNLN 219 (549)
Q Consensus 141 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~ 219 (549)
.. .+++|+.+....|++.... ...++++.|+.+.|.+....+.. +.++++++++.|++.+ +|+|+..+.
T Consensus 195 ls--~~~~l~~l~c~rn~ls~l~-------~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~ 264 (1081)
T KOG0618|consen 195 LS--NLANLEVLHCERNQLSELE-------ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACA 264 (1081)
T ss_pred hh--hccchhhhhhhhcccceEE-------ecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcc
Confidence 11 3334444444444433221 11123777777888777555544 7789999999999985 459999999
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
+|+.++..+|.+. .+|..++... +|+.|.+..|.+. .+|......+.|++|++..|++....+..+.
T Consensus 265 nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~-----------yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 265 NLEALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELE-----------YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred cceEecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhh-----------hCCCcccccceeeeeeehhccccccchHHHh
Confidence 9999999999996 7888777766 7999999999885 3455567788999999999998754333332
Q ss_pred CCC-CCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhh
Q 040238 300 TLP-NLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI 378 (549)
Q Consensus 300 ~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~ 378 (549)
... +|+.|+.+.|.+.... ......++.|+.|.+.+|.+++..-+ .+.+...| +.|+|++|++.......+
T Consensus 332 v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hL-----KVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDSCFP-VLVNFKHL-----KVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred hhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCcccccchh-hhccccce-----eeeeecccccccCCHHHH
Confidence 222 2444444444443332 11113334444444444444322211 12222333 444444444444434444
Q ss_pred cCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 379 ANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 379 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
.++..|++|+||+|+++ .+|+.+..++.|++|...+|++. ..| .+.+++.|+.+|++.|+++
T Consensus 404 ~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 44444444444444444 34444444444444444444444 333 3444444444444444444
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-32 Score=273.19 Aligned_cols=414 Identities=24% Similarity=0.297 Sum_probs=305.8
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
++|++.+.++ .+|..+..-..++.|+++.|.+-...-+++.+.-+|+.||+++|++. ..|.. +..+.+|+.|+++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~--it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQ--ITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCch--hhhHHHHhhcccch
Confidence 4678888886 66777766667999999988776555566666777999999999887 77777 78889999999999
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc-CCC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF-LTG 161 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-~~~ 161 (549)
|.|...+.. ..++.+|+++.|.+|.++.+|..+..+.+|+.|+++.|.+. ..|..+. .+..+..+..++|. +..
T Consensus 78 n~i~~vp~s--~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~--~lt~~~~~~~s~N~~~~~ 152 (1081)
T KOG0618|consen 78 NYIRSVPSS--CSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIE--VLTAEEELAASNNEKIQR 152 (1081)
T ss_pred hhHhhCchh--hhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHH--hhhHHHHHhhhcchhhhh
Confidence 988877732 22688899999999999999999999999999999999886 6777666 77777777777772 221
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcce-eecccCCCCCcCchhhhcC--------------------CC
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIH-YLASNNSLTGEIPSWICNL--------------------NI 220 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~-L~l~~n~~~~~~~~~l~~l--------------------~~ 220 (549)
.... .++++++..|.+.+.++.....+++ +++..|.+... .+..+ ++
T Consensus 153 lg~~---------~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~ 220 (1081)
T KOG0618|consen 153 LGQT---------SIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPS 220 (1081)
T ss_pred hccc---------cchhhhhhhhhcccchhcchhhhheeeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcc
Confidence 1111 1556666666666655555444544 56666655411 11222 45
Q ss_pred CCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC
Q 040238 221 LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT 300 (549)
Q Consensus 221 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 300 (549)
|+.|+.++|.+....+.. .+.+|++++++.|+++ .+|+|+..+.+|+.++..+|.++ .+|..+..
T Consensus 221 l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~-----------~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~ 285 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLS-----------NLPEWIGACANLEALNANHNRLV-ALPLRISR 285 (1081)
T ss_pred hheeeeccCcceeecccc---ccccceeeecchhhhh-----------cchHHHHhcccceEecccchhHH-hhHHHHhh
Confidence 566666666665222211 2236777777777775 46788888999999999999985 67777778
Q ss_pred CCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccc-cccc-------------------cc
Q 040238 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA-MKIV-------------------NT 360 (549)
Q Consensus 301 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~-l~~~-------------------~l 360 (549)
..+|+.|....|.+..+.+.. .++..|++||+..|++. .+|...|..... +..+ .+
T Consensus 286 ~~~L~~l~~~~nel~yip~~l---e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELEYIPPFL---EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL 361 (1081)
T ss_pred hhhHHHHHhhhhhhhhCCCcc---cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH
Confidence 888899999888887764432 56889999999999975 566554433322 1111 23
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++.+|.++...-+.+.++++|+.|+|++|++.......+.+++.|++|+||+|+++ .+|..+..++.|++|...+|
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCC
Confidence 78999999999998889999999999999999999666667899999999999999999 88899999999999999999
Q ss_pred cCcccCCCCCCCCccCCC
Q 040238 441 HLTGLIPPGKQFATFDNT 458 (549)
Q Consensus 441 ~l~~~~p~~~~~~~~~~~ 458 (549)
++.+. |+..++..++.+
T Consensus 441 ~l~~f-Pe~~~l~qL~~l 457 (1081)
T KOG0618|consen 441 QLLSF-PELAQLPQLKVL 457 (1081)
T ss_pred ceeec-hhhhhcCcceEE
Confidence 99854 554444444433
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=7.6e-31 Score=253.21 Aligned_cols=357 Identities=26% Similarity=0.362 Sum_probs=269.7
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccc-cCchhhcCCCCCCCeEec
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGT-IKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~L 80 (549)
+-|-|...++. .+|+.++.+.+|++|.+++|++.... ..+..++.|+.+.+..|++... +|.+ +..+..|.+|||
T Consensus 35 ~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~d--iF~l~dLt~lDL 110 (1255)
T KOG0444|consen 35 TWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTD--IFRLKDLTILDL 110 (1255)
T ss_pred eEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCch--hcccccceeeec
Confidence 34566666776 67889999999999999999987543 5678899999999999988643 5666 678999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
|+|++...+.... .-.++-.|+|++|+|.+||. -+.+++.|-.|||++|++. .+|.-.. .+..|++|.|++|.+
T Consensus 111 ShNqL~EvP~~LE--~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R--RL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 111 SHNQLREVPTNLE--YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR--RLSMLQTLKLSNNPL 185 (1255)
T ss_pred chhhhhhcchhhh--hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHH--HHhhhhhhhcCCChh
Confidence 9998887766533 35678899999999999997 5678899999999999987 6676666 788999999999876
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCC-CcCchhhhcCCCCCeEeCcCCcCCCcCCcc
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLT-GEIPSWICNLNILESLVLSHNNLSGLLPQC 238 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 238 (549)
...... .| .++.+|+.|.+++.+-+ ..+|..+.++.+|..+|+|.|.+. .+|.+
T Consensus 186 ~hfQLr------------QL------------PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 186 NHFQLR------------QL------------PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hHHHHh------------cC------------ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 532211 00 01233444444443322 367888999999999999999998 88999
Q ss_pred hhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccccc
Q 040238 239 LGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGII 318 (549)
Q Consensus 239 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 318 (549)
+..+. +|+.|+|++|.++... .....-.+|++|++|.|+++ .+|.++..++.|+.|.+.+|.+.-.
T Consensus 241 ly~l~-~LrrLNLS~N~iteL~-----------~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~Fe- 306 (1255)
T KOG0444|consen 241 LYKLR-NLRRLNLSGNKITELN-----------MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFE- 306 (1255)
T ss_pred Hhhhh-hhheeccCcCceeeee-----------ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccccc-
Confidence 88876 8999999999997432 22344568999999999998 7888899999999999999886422
Q ss_pred CCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCC
Q 040238 319 KEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHI 398 (549)
Q Consensus 319 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 398 (549)
..+.+.+.+.+|+.+..++|.+ +..|+.+..+..|+.|.|+.|++. .+
T Consensus 307 GiPSGIGKL~~Levf~aanN~L-------------------------------ElVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKL-------------------------------ELVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred CCccchhhhhhhHHHHhhcccc-------------------------------ccCchhhhhhHHHHHhccccccee-ec
Confidence 1122336666777666666654 267888899999999999999998 78
Q ss_pred CcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecc
Q 040238 399 PSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438 (549)
Q Consensus 399 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 438 (549)
|+++.-++.|+.||+.+|.-.-..|..-..-.+|+.-+++
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 9999999999999999997663333322222455555544
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=5.7e-23 Score=230.52 Aligned_cols=346 Identities=20% Similarity=0.202 Sum_probs=197.2
Q ss_pred cccccCCCCCCEEEccCCcC------CccccccccCCC-CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCcccee
Q 040238 16 LGSIGNLRSLEAIHIAKCNV------SGQITSSLRNLS-QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVL 88 (549)
Q Consensus 16 ~~~~~~l~~L~~L~Ls~n~~------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 88 (549)
+.+|.++++|+.|.+..+.. ....|+.|..++ +|+.|++.++.+. .+|.. | ...+|+.|++++|.+..+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~--f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN--F-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCc--C-CccCCcEEECcCcccccc
Confidence 34466666666666654321 122344454443 4666666666655 55544 3 345666666666655554
Q ss_pred eccCCCcCCCCCCEEEccCCC-CCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc-CCCCCCcc
Q 040238 89 TKATSNTTSQKLKYIGLRSCN-LTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF-LTGFDQHL 166 (549)
Q Consensus 89 ~~~~~~~~~~~L~~L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~ 166 (549)
.... ..+++|+.|+++++. +..+|. +..+++|++|++++|.....+|..+. .+++|+.|++++|. +..++...
T Consensus 627 ~~~~--~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 627 WDGV--HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cccc--ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcC
Confidence 3322 245666666666653 355553 55566666666666654445566555 66666666666543 22222211
Q ss_pred ccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCC
Q 040238 167 VVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDEL 246 (549)
Q Consensus 167 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 246 (549)
. .++|+.|++++|.....+|... ++|++|++++|.+. .+|..+ . .++|
T Consensus 702 ---~--l~sL~~L~Lsgc~~L~~~p~~~------------------------~nL~~L~L~~n~i~-~lP~~~-~-l~~L 749 (1153)
T PLN03210 702 ---N--LKSLYRLNLSGCSRLKSFPDIS------------------------TNISWLDLDETAIE-EFPSNL-R-LENL 749 (1153)
T ss_pred ---C--CCCCCEEeCCCCCCcccccccc------------------------CCcCeeecCCCccc-cccccc-c-cccc
Confidence 1 1225555555554333333333 34555555555554 344332 1 2245
Q ss_pred CeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccC
Q 040238 247 SVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCG 326 (549)
Q Consensus 247 ~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 326 (549)
++|++.++....... .+. ...+.....+++|+.|++++|.....+|..++.+++|+.|++++|...+..|... .
T Consensus 750 ~~L~l~~~~~~~l~~-~~~--~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~ 823 (1153)
T PLN03210 750 DELILCEMKSEKLWE-RVQ--PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---N 823 (1153)
T ss_pred ccccccccchhhccc-ccc--ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---C
Confidence 555555432211000 000 0001112234678888888887666778788888888888888875444333322 5
Q ss_pred CCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCC
Q 040238 327 FSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP 406 (549)
Q Consensus 327 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 406 (549)
+++|+.|++++|.....+|.. .. +++.|++++|.++ .+|..+..+++|++|++++|+-...+|..+..++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~----~~-----nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI----ST-----NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred ccccCEEECCCCCcccccccc----cc-----ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 778888888887655444421 12 3378888888887 4677788888999999988654446777778888
Q ss_pred CCCEeeCCCCcc
Q 040238 407 NLESLDLSNNKF 418 (549)
Q Consensus 407 ~L~~L~l~~n~l 418 (549)
+|+.+++++|.-
T Consensus 894 ~L~~L~l~~C~~ 905 (1153)
T PLN03210 894 HLETVDFSDCGA 905 (1153)
T ss_pred CCCeeecCCCcc
Confidence 888899888853
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=8e-27 Score=214.12 Aligned_cols=390 Identities=22% Similarity=0.194 Sum_probs=205.7
Q ss_pred CCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC-CccceeeccCCCcCCCCCCEE
Q 040238 25 LEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL-NRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 25 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L 103 (549)
-..+.|..|.|+.+.+.+|+.+++|+.|||++|.|+...|.. |..++.|..|-+-+ |+|+.++...+. .+..|+.|
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A--F~GL~~l~~Lvlyg~NkI~~l~k~~F~-gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA--FKGLASLLSLVLYGNNKITDLPKGAFG-GLSSLQRL 145 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh--hhhhHhhhHHHhhcCCchhhhhhhHhh-hHHHHHHH
Confidence 445555555555555555555555555555555555444444 55555544433332 555555554443 35555555
Q ss_pred EccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCcccc-----------ccC
Q 040238 104 GLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVV-----------LPA 171 (549)
Q Consensus 104 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----------~~~ 171 (549)
.+.-|++.-++. .|..++++..|.+.+|.+....-..|. .+.+++.+.+..|.+...-.-.+. ...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~--~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQ--GLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhcccccc--chhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 555555544332 455555555555555555432233444 455555555555442211000000 000
Q ss_pred CCCCccEEEccCCcCCCCCCCC-CCCccee---ecccCCCCCcCc-hhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCC
Q 040238 172 NKGDLLTFDLSSNNLQGPLPVP-PPGTIHY---LASNNSLTGEIP-SWICNLNILESLVLSHNNLSGLLPQCLGNSSDEL 246 (549)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~-~~~L~~L---~l~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 246 (549)
.. .....+.+.++....+.. ..+++.+ ..+.+.+.++-| ..|.++++|++|++++|.+++.-+.+|.... .+
T Consensus 224 rc--~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l 300 (498)
T KOG4237|consen 224 RC--VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-EL 300 (498)
T ss_pred ee--cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh-hh
Confidence 00 001111111111111111 1111111 222333333333 4578899999999999999866666665555 79
Q ss_pred CeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccC-------
Q 040238 247 SVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK------- 319 (549)
Q Consensus 247 ~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------- 319 (549)
++|.|..|++....... |.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++--...
T Consensus 301 ~eL~L~~N~l~~v~~~~----------f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGM----------FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred hhhhcCcchHHHHHHHh----------hhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH
Confidence 99999999886544333 4778888999999999998888888888899999988876632110
Q ss_pred ------CCCCc-cCCCCCceeeCCCCcccc---ccChhhhhcccccccc----cc-ceEEccCCcCcccCchhhcCCCCC
Q 040238 320 ------EPRTD-CGFSKLRIIDLSNNIFIG---TLPLKSFLCWNAMKIV----NT-TGIILSNNSFDSVIPASIANLKGL 384 (549)
Q Consensus 320 ------~~~~~-~~l~~L~~L~ls~n~l~~---~~~~~~~~~l~~l~~~----~l-~~L~l~~n~l~~~~~~~~~~l~~L 384 (549)
..... .....++.+++++..+.. ..|.+ ....+.-..+ -+ +....|+..++ .+|..+ ...-
T Consensus 371 lr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee-~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i--P~d~ 446 (498)
T KOG4237|consen 371 LRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE-LGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI--PVDV 446 (498)
T ss_pred HhhCCCCCCCCCCCCchhccccchhccccccccCCccc-cCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC--Cchh
Confidence 00000 122345555555544321 11111 0000000000 00 22233333333 222211 1345
Q ss_pred CEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 385 QVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 385 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
.+|++.+|.+. .+|+. .+.+| .+|+++|+++..--..|.++++|.+|-+++|
T Consensus 447 telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 447 TELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 67888899888 66665 56677 8899999988666678888888888888876
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.3e-22 Score=223.47 Aligned_cols=336 Identities=21% Similarity=0.231 Sum_probs=212.9
Q ss_pred ccccCCCCCCEEeCCCCcC------ccccCchhhcCCC-CCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCC
Q 040238 41 SSLRNLSQLFFLDLAKNSY------RGTIKLDVLLTSW-KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF 113 (549)
Q Consensus 41 ~~~~~l~~L~~L~Ls~n~i------~~~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l 113 (549)
.+|.++++|+.|.+..+.. ...+|.. +..+ .+|+.|++.++.+..++... .+.+|++|++++|.+..+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~--~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG--FDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcc--hhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccccc
Confidence 4455555555555543321 1122222 2222 23555555554443333321 234455555555555444
Q ss_pred ChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCC
Q 040238 114 PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP 193 (549)
Q Consensus 114 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 193 (549)
+..+..+++|+.|+++++.....+|. +. .+++|+ .|++++|.....+|..
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--~l~~Le---------------------------~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LS--MATNLE---------------------------TLKLSDCSSLVELPSS 676 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cc--cCCccc---------------------------EEEecCCCCccccchh
Confidence 44444455555555554432223332 22 344444 4444444433333332
Q ss_pred ---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCC
Q 040238 194 ---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270 (549)
Q Consensus 194 ---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l 270 (549)
+++|+.|++++|.....+|..+ .+++|+.|++++|...+.+|.. ..+|++|++++|.+.. +
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-----------l 740 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-----------F 740 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-----------c
Confidence 4556666666655444566544 6889999999999766566643 3479999999998753 2
Q ss_pred CccccCCCCCcEEEccCCcCC-------CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccc
Q 040238 271 PRSLINCSKLEFLGLGNNQIS-------DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGT 343 (549)
Q Consensus 271 ~~~l~~~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 343 (549)
|..+ .+++|++|++.++... ...+..+...++|+.|++++|...+..|..+ .++++|+.|++++|...+.
T Consensus 741 P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 741 PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLET 817 (1153)
T ss_pred cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCe
Confidence 3333 4678888888874322 1112223345789999999998766666554 7899999999999877777
Q ss_pred cChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCC
Q 040238 344 LPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIP 423 (549)
Q Consensus 344 ~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 423 (549)
+|... .+++| +.|++++|......|.. .++|+.|++++|.+. .+|..+..+++|+.|++++|.-...+|
T Consensus 818 LP~~~--~L~sL-----~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 818 LPTGI--NLESL-----ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred eCCCC--Ccccc-----CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccC
Confidence 77543 34444 99999998765555543 468999999999998 788899999999999999975555688
Q ss_pred cCccCCCCCcEEecccCc
Q 040238 424 QQLVELTFLEFFNVSDNH 441 (549)
Q Consensus 424 ~~~~~l~~L~~L~l~~N~ 441 (549)
..+..+++|+.+++++|.
T Consensus 887 ~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 887 LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccccCCCeeecCCCc
Confidence 888899999999999994
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.7e-21 Score=203.17 Aligned_cols=260 Identities=27% Similarity=0.352 Sum_probs=125.4
Q ss_pred CCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 100 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
-..|+++++.++++|..+. .+|+.|++.+|+++ .+|. .+++|++|++++|+++.++.. . ++|+.|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~-----lp~~Lk~LdLs~N~LtsLP~l-----p--~sL~~L 267 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPVL-----P--PGLLEL 267 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC-----CCCCCcEEEecCCccCcccCc-----c--ccccee
Confidence 4456666666666665443 35666666666665 3332 235566666666666554321 0 125566
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
+++.|.+.. +|..+.+|+.|++++|.+.. +|. ..++|+.|++++|.+.+ +|.. +..|+.|++++|.+++.
T Consensus 268 ~Ls~N~L~~-Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 268 SIFSNPLTH-LPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTSL 337 (788)
T ss_pred eccCCchhh-hhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC----cccccccccccCccccc
Confidence 666555542 22223344444444444432 222 12345555555555442 2321 12344455555544321
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
|. ...+|+.|++++|+++. +|.. .++|+.|++++|.+..+.. ...+|
T Consensus 338 -----------P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~------l~~~L--------- 384 (788)
T PRK15387 338 -----------PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA------LPSGL--------- 384 (788)
T ss_pred -----------cc---cccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc------ccccc---------
Confidence 10 01244455555555442 2211 1234444444444443211 11233
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++
T Consensus 385 ---------------------~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 385 ---------------------KELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred ---------------------ceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc
Confidence 445555555543 2221 245666666666666 34432 235666666766666
Q ss_pred ccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 420 GQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
.+|..+.++++|+.|++++|+|++..|
T Consensus 436 -~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 436 -RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -ccChHHhhccCCCeEECCCCCCCchHH
Confidence 556666666667777777776665544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.7e-23 Score=191.03 Aligned_cols=236 Identities=25% Similarity=0.268 Sum_probs=126.9
Q ss_pred CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeee-cCCCccCCcCCCcccccCCCCc
Q 040238 194 PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLD-LQGNNFFGTIPNTFIKERRIPR 272 (549)
Q Consensus 194 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~-L~~n~l~~~~~~~~~~~~~l~~ 272 (549)
++....+++..|.|+...+.+|..+++|+.||||+|.|+...|.+|.++. ++..|. +++|+|+......|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F-------- 136 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAF-------- 136 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHh--------
Confidence 44555555666666655556666666666666666666655555554444 333333 33356654444443
Q ss_pred cccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc-------------
Q 040238 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI------------- 339 (549)
Q Consensus 273 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~------------- 339 (549)
.++.+++.|.+.-|++.....+.|+.+++|..|.+.+|.+..+....+ ..+.+++.+.+..|.
T Consensus 137 --~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf--~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 137 --GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF--QGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred --hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccc--cchhccchHhhhcCccccccccchhhhH
Confidence 334444444444444444334444444444444444444433332222 333333333333332
Q ss_pred ------------------------------------------------cccccChhhhhccccccccccceEEccCCcCc
Q 040238 340 ------------------------------------------------FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD 371 (549)
Q Consensus 340 ------------------------------------------------l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~ 371 (549)
..+..|..+|..+++| +.|+|++|.++
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L-----~~lnlsnN~i~ 287 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL-----RKLNLSNNKIT 287 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc-----eEeccCCCccc
Confidence 2334455555555555 66666666666
Q ss_pred ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 372 SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 372 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
++.+.+|.++.++++|.|..|++...-..+|.++..|+.|+|.+|+|+..-|..|..+.+|.+|++-.|+|.|.+-
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 6666666666666666666666664445566666666666666666666666666666666666666666665543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=3.6e-21 Score=200.78 Aligned_cols=191 Identities=24% Similarity=0.277 Sum_probs=104.4
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
.||++++.++ .+|..+. ++|+.|++++|+++.+ |. ..++|++|++++|+++ .+|.. .++|+.|++++
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l-----p~sL~~L~Ls~ 271 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL-----PPGLLELSIFS 271 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc-----ccccceeeccC
Confidence 5677777776 4555554 3677777777776643 32 2466777777777766 33421 24666777777
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGF 162 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 162 (549)
|.++.++.. ..+|+.|++++|+++.+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+..+
T Consensus 272 N~L~~Lp~l-----p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l-----p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 272 NPLTHLPAL-----PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL-----PSELCKLWAYNNQLTSL 337 (788)
T ss_pred Cchhhhhhc-----hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC-----cccccccccccCccccc
Confidence 766655442 24566677777766666642 3456677777776653 3332 23456666666666554
Q ss_pred CCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCC
Q 040238 163 DQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 232 (549)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 232 (549)
+.. . .+|+.|++++|.++. +|..+++|+.|++++|.+.. +|.. ..+|+.|++++|.+.
T Consensus 338 P~l-----p--~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 338 PTL-----P--SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred ccc-----c--cccceEecCCCccCC-CCCCCcccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence 321 0 126666666666653 33334444555555554442 2221 123444555554444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=9.9e-19 Score=183.83 Aligned_cols=246 Identities=24% Similarity=0.375 Sum_probs=135.4
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
+...|++++++++.. |..+. ++|+.|++++|.++ .+|.. +. .+|++|++++|.++.++... ..+|+.|
T Consensus 179 ~~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lt-sLP~~--l~--~nL~~L~Ls~N~LtsLP~~l----~~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACIP--EQITTLILDNNELK-SLPEN--LQ--GNIKTLYANSNQLTSIPATL----PDTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCC-cCChh--hc--cCCCEEECCCCccccCChhh----hccccEE
Confidence 345566666555532 33221 35666666666665 44433 11 35666666666555443321 2356666
Q ss_pred EccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccC
Q 040238 104 GLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSS 183 (549)
Q Consensus 104 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~ 183 (549)
++++|.+..+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++.++... + ..|+.|++++
T Consensus 247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~----~sL~~L~Ls~N~Lt~LP~~l---p---~sL~~L~Ls~ 313 (754)
T PRK15370 247 ELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP----EELRYLSVYDNSIRTLPAHL---P---SGITHLNVQS 313 (754)
T ss_pred ECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC----CCCcEEECCCCccccCcccc---h---hhHHHHHhcC
Confidence 666666666665443 35666666666665 3444331 35666666666666544321 0 1266666666
Q ss_pred CcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCc
Q 040238 184 NNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNT 263 (549)
Q Consensus 184 n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 263 (549)
|.+....+..+++|+.|++++|.+++ +|..+. ++|+.|++++|.+. .+|..+. ++|++|++++|.++..
T Consensus 314 N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt~L---- 382 (754)
T PRK15370 314 NSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALTNL---- 382 (754)
T ss_pred CccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCCCC----
Confidence 66654322234566666666666654 444332 56777777777776 4555432 3677777777776532
Q ss_pred ccccCCCCccccCCCCCcEEEccCCcCCCCcCc----ccCCCCCCCEEEccCcccc
Q 040238 264 FIKERRIPRSLINCSKLEFLGLGNNQISDTFPS----WLGTLPNLNVLILRSNIFY 315 (549)
Q Consensus 264 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~ 315 (549)
|..+. ..|+.|++++|++.. +|. .+..++.+..+++.+|++.
T Consensus 383 -------P~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 -------PENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -------CHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 22221 256777777777763 333 2334566777777777664
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.7e-18 Score=182.12 Aligned_cols=138 Identities=23% Similarity=0.346 Sum_probs=63.7
Q ss_pred CCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccE
Q 040238 99 KLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLT 178 (549)
Q Consensus 99 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~ 178 (549)
+...|++++++++.+|..+. ++++.|++++|.++ .+|..+ .++|+.|++++|++..++... .. .|+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l----~~nL~~L~Ls~N~LtsLP~~l----~~--~L~~ 245 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENL----QGNIKTLYANSNQLTSIPATL----PD--TIQE 245 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhh----ccCCCEEECCCCccccCChhh----hc--cccE
Confidence 34556666666655555432 35666666666665 344432 235666666666555443221 01 2555
Q ss_pred EEccCCcCCCCCCCC-CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccC
Q 040238 179 FDLSSNNLQGPLPVP-PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFF 257 (549)
Q Consensus 179 L~L~~n~l~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 257 (549)
|++++|.+.. +|.. ..+|+.|++++|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++
T Consensus 246 L~Ls~N~L~~-LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 246 MELSINRITE-LPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT 317 (754)
T ss_pred EECcCCccCc-CChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc
Confidence 5555555542 2211 233444444444443 2233221 24555555555544 2333221 23555555555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=6.8e-19 Score=172.20 Aligned_cols=283 Identities=22% Similarity=0.190 Sum_probs=173.3
Q ss_pred EEECCCCCCC-CcccccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCcc------ccCchhhcCC
Q 040238 3 FLYLRLNNFS-GDLLGSIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRG------TIKLDVLLTS 71 (549)
Q Consensus 3 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~~~ 71 (549)
.|+|.++.++ +.....|..+++|++|+++++.++.. ++..+...+.+++++++++.+.+ .++. .+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~--~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ--GLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH--HHHh
Confidence 5889999887 34556677888899999999998543 45667788889999999988762 1122 3677
Q ss_pred CCCCCeEeccCCccceeeccCCCcCC---CCCCEEEccCCCCCC-----CChhhcCC-CCccEEEeecCcCCCCC----C
Q 040238 72 WKNLEFLALSLNRLSVLTKATSNTTS---QKLKYIGLRSCNLTK-----FPNFLQNQ-YHLLVLDLSDNRIQGKV----P 138 (549)
Q Consensus 72 l~~L~~L~Ls~n~i~~~~~~~~~~~~---~~L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~l~~n~l~~~~----~ 138 (549)
+++|++|++++|.+......... .+ ++|++|++++|.++. +...+..+ ++|+.|++++|.+++.. +
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 89999999999977632222111 22 459999999998852 33355666 89999999999988432 3
Q ss_pred cccccccCCCCcEEEccCCcCCCCCCcccc-ccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhc
Q 040238 139 KWLLDPNMQNLNALNISHNFLTGFDQHLVV-LPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICN 217 (549)
Q Consensus 139 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 217 (549)
..+. .+++|++|++++|.+.+....... .....++|+.|++++|.+.+... ..+...+..
T Consensus 159 ~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----------------~~l~~~~~~ 219 (319)
T cd00116 159 KALR--ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----------------SALAETLAS 219 (319)
T ss_pred HHHH--hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----------------HHHHHHhcc
Confidence 3444 678999999999988752211000 00111236666666655431100 112334455
Q ss_pred CCCCCeEeCcCCcCCCcCCcchhcC----CCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCC
Q 040238 218 LNILESLVLSHNNLSGLLPQCLGNS----SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT 293 (549)
Q Consensus 218 l~~L~~L~Ls~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~ 293 (549)
+++|++|++++|.+.+.....+... .+.|++|++++|.++..... .+...+..+++|+++++++|.+...
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~------~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK------DLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH------HHHHHHhcCCCccEEECCCCCCcHH
Confidence 6777777777777664333222222 13577777777766522111 1123334456677777777766643
Q ss_pred ----cCcccCCC-CCCCEEEccCcc
Q 040238 294 ----FPSWLGTL-PNLNVLILRSNI 313 (549)
Q Consensus 294 ----~~~~~~~l-~~L~~L~L~~n~ 313 (549)
....+... +.|+.+++.+|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 294 GAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHhhcCCchhhcccCCCC
Confidence 22222223 455555555553
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=8e-19 Score=171.69 Aligned_cols=61 Identities=30% Similarity=0.418 Sum_probs=35.1
Q ss_pred CCCCEEEccCCcccc----CCCcccCCCCCCCEeeCCCCccccc----CCcCccCC-CCCcEEecccCcC
Q 040238 382 KGLQVLNLQNNSLQG----HIPSCLGNLPNLESLDLSNNKFSGQ----IPQQLVEL-TFLEFFNVSDNHL 442 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~N~l 442 (549)
+.|++|++++|.++. .+...+..+++|+.+++++|.++.. ....+... +.|+.+++.+|+|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 567777777776651 2233445556777777777777643 22223333 5667777766654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3.1e-18 Score=140.07 Aligned_cols=179 Identities=28% Similarity=0.544 Sum_probs=105.8
Q ss_pred cCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCc
Q 040238 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~ 296 (549)
++..++.|.+|+|+++ .+|..+..+. +|+.|++.+|++. ++|.+++.+++|+.|+++-|++. ..|.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~-nlevln~~nnqie-----------~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELK-NLEVLNLSNNQIE-----------ELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhh-hhhhhhcccchhh-----------hcChhhhhchhhhheecchhhhh-cCcc
Confidence 4555666666676666 5555555544 5666666666663 34555556666666666666554 4555
Q ss_pred ccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCch
Q 040238 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPA 376 (549)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~ 376 (549)
.|+.+|.|+.|++..|.+ ....-++-|..++.+ +.|+|++|.+. .+|.
T Consensus 97 gfgs~p~levldltynnl--------------------------~e~~lpgnff~m~tl-----ralyl~dndfe-~lp~ 144 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNL--------------------------NENSLPGNFFYMTTL-----RALYLGDNDFE-ILPP 144 (264)
T ss_pred ccCCCchhhhhhcccccc--------------------------ccccCCcchhHHHHH-----HHHHhcCCCcc-cCCh
Confidence 555555555555555544 221112224444444 55566666665 5566
Q ss_pred hhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC---CCcEEecccCcCc
Q 040238 377 SIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT---FLEFFNVSDNHLT 443 (549)
Q Consensus 377 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~N~l~ 443 (549)
.++.+++|+.|.+..|.+. .+|..++.+++|++|++.+|+++ .+|..++++. +=+.+.+.+|+|.
T Consensus 145 dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred hhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 6777888888888888777 67777778888888888888877 5555444432 2233444455544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=7e-18 Score=137.99 Aligned_cols=156 Identities=22% Similarity=0.317 Sum_probs=127.2
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.|.||+|.++ .+|.-+..+.+|+.|++++|.+. ..|..+..+++|++|+++-|++. ..|.. |+.++.|++||++
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg--fgs~p~levldlt 110 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG--FGSFPALEVLDLT 110 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc--cCCCchhhhhhcc
Confidence 45778888887 55667888899999999998887 45678888999999999888887 77877 8899999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.+..-.-.-.++.+..|+.|++++|.++-+|..++++++|+.|.++.|.+- .+|..+. .++.|++|.+.+|+++.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig--~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG--DLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHH--HHHHHHHHhcccceeee
Confidence 88765433222223677888889999999888988999999999999988876 7788887 88889999999998888
Q ss_pred CCCc
Q 040238 162 FDQH 165 (549)
Q Consensus 162 ~~~~ 165 (549)
.++.
T Consensus 188 lppe 191 (264)
T KOG0617|consen 188 LPPE 191 (264)
T ss_pred cChh
Confidence 7777
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=2.3e-15 Score=158.03 Aligned_cols=117 Identities=39% Similarity=0.700 Sum_probs=103.2
Q ss_pred cceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 360 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCCCCC--CCccCCCccCCCCCCCCCCCCCCCC
Q 040238 440 NHLTGLIPPGKQ--FATFDNTSFDSNSGLCGRPLSKGCE 476 (549)
Q Consensus 440 N~l~~~~p~~~~--~~~~~~~~~~~n~~lc~~~~~~~c~ 476 (549)
|+++|.+|.... ........+.+|+.+|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999996521 2233456788999999877555563
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.1e-13 Score=128.22 Aligned_cols=143 Identities=29% Similarity=0.292 Sum_probs=94.7
Q ss_pred cCCCCCCEEEccCCcCCcccc-ccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCC
Q 040238 20 GNLRSLEAIHIAKCNVSGQIT-SSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQ 98 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 98 (549)
+++++|+...|.++.+..... +-...|++++.|||++|-+..-.+...+...+++|+.|+++.|++...........++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467888888888887663221 3566788888888888887755555556778888888888888766554444333677
Q ss_pred CCCEEEccCCCCC--CCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCC
Q 040238 99 KLKYIGLRSCNLT--KFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQ 164 (549)
Q Consensus 99 ~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 164 (549)
+|+.|.++.|.++ .+-..+..+++|+.|++.+|.....-..... .+..|+.|+|++|.+...+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~--i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK--ILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh--hhhHHhhccccCCccccccc
Confidence 7888888888773 2333455667777777777742212222222 55667777777776665543
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.24 E-value=2.7e-11 Score=127.48 Aligned_cols=113 Identities=34% Similarity=0.471 Sum_probs=102.6
Q ss_pred CCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
.++.|++++|.+.+.+|.. +..+++| +.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.++.+++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L-----~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHL-----QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCC-----CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 4788999999999999865 7777777 999999999999999999999999999999999999999999999999
Q ss_pred CEeeCCCCcccccCCcCccCC-CCCcEEecccCcCcccCC
Q 040238 409 ESLDLSNNKFSGQIPQQLVEL-TFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 409 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p 447 (549)
+.|+|++|++++.+|..+... .++..+++++|+..|..|
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999999999988764 567899999998877665
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2.5e-13 Score=131.69 Aligned_cols=192 Identities=27% Similarity=0.333 Sum_probs=124.5
Q ss_pred CCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEc
Q 040238 75 LEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNI 154 (549)
Q Consensus 75 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L 154 (549)
-...|++.|++..++..... +..|+.+.+..|.+..+|..+.++..|+.||++.|+++ ..|..++ .+ -|+.|.+
T Consensus 77 t~~aDlsrNR~~elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~l-pLkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DL-PLKVLIV 150 (722)
T ss_pred hhhhhccccccccCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhh--cC-cceeEEE
Confidence 34556666666555554332 34566666666666666666666666666666666665 5555443 23 3666666
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCc
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 234 (549)
++|+++..+.... .... |..||.+.|.+. .+|..+.++..|+.|.+..|.+. .
T Consensus 151 sNNkl~~lp~~ig--~~~t--l~~ld~s~nei~----------------------slpsql~~l~slr~l~vrRn~l~-~ 203 (722)
T KOG0532|consen 151 SNNKLTSLPEEIG--LLPT--LAHLDVSKNEIQ----------------------SLPSQLGYLTSLRDLNVRRNHLE-D 203 (722)
T ss_pred ecCccccCCcccc--cchh--HHHhhhhhhhhh----------------------hchHHhhhHHHHHHHHHhhhhhh-h
Confidence 6666666555422 1211 555555555554 67788888999999999999888 6
Q ss_pred CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC---CCCCCEEEccC
Q 040238 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT---LPNLNVLILRS 311 (549)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~ 311 (549)
+|..+..++ |..||++.|+++ .+|..|.+|+.|++|-|.+|.++. .|..+.. ..=.++|+...
T Consensus 204 lp~El~~Lp--Li~lDfScNkis-----------~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 204 LPEELCSLP--LIRLDFSCNKIS-----------YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred CCHHHhCCc--eeeeecccCcee-----------ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchh
Confidence 777777544 899999999986 456777889999999999999873 4443332 22235667766
Q ss_pred cc
Q 040238 312 NI 313 (549)
Q Consensus 312 n~ 313 (549)
|.
T Consensus 270 ~q 271 (722)
T KOG0532|consen 270 CQ 271 (722)
T ss_pred cc
Confidence 63
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=1.6e-11 Score=105.73 Aligned_cols=128 Identities=23% Similarity=0.295 Sum_probs=52.2
Q ss_pred cccCCCCCCEEEccCCcCCcccccccc-CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcC
Q 040238 18 SIGNLRSLEAIHIAKCNVSGQITSSLR-NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTT 96 (549)
Q Consensus 18 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 96 (549)
.+.+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+. +. . +..+++|++|++++|+|+.++.... ..
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~--l~~L~~L~~L~L~~N~I~~i~~~l~-~~ 86 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-G--LPGLPRLKTLDLSNNRISSISEGLD-KN 86 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T------TT--EEE--SS---S-CHHHH-HH
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-C--ccChhhhhhcccCCCCCCccccchH-Hh
Confidence 356677899999999999865 3465 58899999999999984 32 2 6789999999999999998864211 14
Q ss_pred CCCCCEEEccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCCc----ccccccCCCCcEEEcc
Q 040238 97 SQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPK----WLLDPNMQNLNALNIS 155 (549)
Q Consensus 97 ~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~l~~L~~L~L~ 155 (549)
+++|++|++++|++..+.+ .+..+++|++|++.+|+++.. +. .+. .+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~--~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIY--KLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHH--H-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHH--HcChhheeCCE
Confidence 7899999999999966553 677899999999999998743 32 233 78999999864
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=2.4e-12 Score=117.90 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=84.0
Q ss_pred cccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCccc----cCch-----hhcCCCCCCCeEeccCCc
Q 040238 18 SIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGT----IKLD-----VLLTSWKNLEFLALSLNR 84 (549)
Q Consensus 18 ~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~-----~~~~~l~~L~~L~Ls~n~ 84 (549)
.+..+..+++++|++|.+... +...+.+.++|+..+++.- ++|. +|.. ..+..+++|++||||+|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 345567777888888777532 3344556667777777653 2222 2211 124556678888888875
Q ss_pred cceeeccCCCc---CCCCCCEEEccCCCCCCCCh--------------hhcCCCCccEEEeecCcCCCCCC----ccccc
Q 040238 85 LSVLTKATSNT---TSQKLKYIGLRSCNLTKFPN--------------FLQNQYHLLVLDLSDNRIQGKVP----KWLLD 143 (549)
Q Consensus 85 i~~~~~~~~~~---~~~~L~~L~l~~n~l~~l~~--------------~l~~l~~L~~L~l~~n~l~~~~~----~~~~~ 143 (549)
+..-+...+.. .+..|++|.|.+|.++.... -...-+.|+++....|++...-. ..|.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~- 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ- 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH-
Confidence 54433322211 56778888888887743221 12344678888888888753322 2333
Q ss_pred ccCCCCcEEEccCCcCCC
Q 040238 144 PNMQNLNALNISHNFLTG 161 (549)
Q Consensus 144 ~~l~~L~~L~L~~n~~~~ 161 (549)
..+.|+.+.+..|.+..
T Consensus 183 -~~~~leevr~~qN~I~~ 199 (382)
T KOG1909|consen 183 -SHPTLEEVRLSQNGIRP 199 (382)
T ss_pred -hccccceEEEecccccC
Confidence 45788888888887653
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.4e-10 Score=116.79 Aligned_cols=183 Identities=39% Similarity=0.512 Sum_probs=99.9
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
+..++.++.|++.+|.++ .++.......++|+.|++++|.+.. +|..+..+++|+.|++++|++.. +
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-----------l~~~~~~l~~L~~L~l~~N~l~~-l 178 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-----------LPSPLRNLPNLKNLDLSFNDLSD-L 178 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-----------hhhhhhccccccccccCCchhhh-h
Confidence 334455666666666666 3333332210146666666666642 22334566666666666666663 3
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~ 374 (549)
+...+..++|+.|++++|.+..+.+.. .....|+++++++|++ . ..
T Consensus 179 ~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~------------------------------~-~~ 224 (394)
T COG4886 179 PKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSI------------------------------I-EL 224 (394)
T ss_pred hhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcc------------------------------e-ec
Confidence 333335566666666666665543221 1233355555555531 1 23
Q ss_pred chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+..+..+..+..|.+.+|++. ..+..++.++.++.|++++|+++...+ +..+.+++.|++++|.+....|
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 334555666666666666665 334556666667777777776663332 6666667777777766665444
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.6e-11 Score=115.67 Aligned_cols=89 Identities=25% Similarity=0.261 Sum_probs=48.0
Q ss_pred CCCCCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCCc-ccccccCCCCcEEEccCCcCCCCCCccccccCC
Q 040238 96 TSQKLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVPK-WLLDPNMQNLNALNISHNFLTGFDQHLVVLPAN 172 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 172 (549)
++.+|+.+.|.++.+...+ .....+++++.|||++|-+....+- .++ ..+|+|+.|+++.|++............
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~-eqLp~Le~LNls~Nrl~~~~~s~~~~~l- 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIA-EQLPSLENLNLSSNRLSNFISSNTTLLL- 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHH-HhcccchhcccccccccCCccccchhhh-
Confidence 5566777777776664444 2455667777777777655422111 111 2567777777777766544333211111
Q ss_pred CCCccEEEccCCcCC
Q 040238 173 KGDLLTFDLSSNNLQ 187 (549)
Q Consensus 173 ~~~L~~L~L~~n~l~ 187 (549)
.+|+.|.++.|.++
T Consensus 197 -~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 197 -SHLKQLVLNSCGLS 210 (505)
T ss_pred -hhhheEEeccCCCC
Confidence 22556666655554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=3.6e-12 Score=123.78 Aligned_cols=197 Identities=26% Similarity=0.314 Sum_probs=152.4
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCC
Q 040238 20 GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQK 99 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 99 (549)
..+..-...||+.|++. ..|..+..+..|+.+.+..|.+. .+|.. +.++..|.+||++.|+++.++...+. --
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~--i~~L~~lt~l~ls~NqlS~lp~~lC~---lp 144 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEA--ICNLEALTFLDLSSNQLSHLPDGLCD---LP 144 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchh--hhhhhHHHHhhhccchhhcCChhhhc---Cc
Confidence 35566677888999887 56778888888999999999888 77877 88999999999999988888876544 35
Q ss_pred CCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 100 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
|+.|-+++|+++.+|+.++.+..|..||.+.|.+. .+|.-+. .+.+|+.|.+..|++...+...... . |..|
T Consensus 145 Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~--~l~slr~l~vrRn~l~~lp~El~~L---p--Li~l 216 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG--YLTSLRDLNVRRNHLEDLPEELCSL---P--LIRL 216 (722)
T ss_pred ceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhh--hHHHHHHHHHhhhhhhhCCHHHhCC---c--eeee
Confidence 88999999999999998888889999999999987 6676676 8889999999999988887764311 1 7788
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCC--CCCCeeecCCC
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSS--DELSVLDLQGN 254 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~L~~n 254 (549)
|++.|++. .+|-.|..|..|++|-|.+|.+. .-|..+...- .=.++|+..-+
T Consensus 217 DfScNkis----------------------~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFSCNKIS----------------------YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecccCcee----------------------ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88887776 67778888888888888888876 4444443221 01345555555
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.8e-10 Score=99.25 Aligned_cols=87 Identities=31% Similarity=0.361 Sum_probs=17.1
Q ss_pred CCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCc
Q 040238 71 SWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLN 150 (549)
Q Consensus 71 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 150 (549)
+..+++.|+|++|.|+.+..... .+.+|+.|++++|.++.++ .+..++.|++|++++|+++. +...+. ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~--~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~-~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGA--TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS-ISEGLD-KNLPNLQ 91 (175)
T ss_dssp -------------------S--T--T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S--CHHHH-HH-TT--
T ss_pred cccccccccccccccccccchhh--hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc-cccchH-HhCCcCC
Confidence 33344555555555444433221 2344555555555554443 34445555555555555542 222221 0345555
Q ss_pred EEEccCCcCCCC
Q 040238 151 ALNISHNFLTGF 162 (549)
Q Consensus 151 ~L~L~~n~~~~~ 162 (549)
+|++++|++...
T Consensus 92 ~L~L~~N~I~~l 103 (175)
T PF14580_consen 92 ELYLSNNKISDL 103 (175)
T ss_dssp EEE-TTS---SC
T ss_pred EEECcCCcCCCh
Confidence 555555555443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=3.9e-11 Score=107.62 Aligned_cols=110 Identities=25% Similarity=0.240 Sum_probs=50.3
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
+.-.|.++.|++|+|.+... .. +..+. +|++|||++|.++.. ..|-..+-++++|.++.|.+...
T Consensus 303 vKL~Pkir~L~lS~N~i~~v-~n-La~L~-~L~~LDLS~N~Ls~~-----------~Gwh~KLGNIKtL~La~N~iE~L- 367 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTV-QN-LAELP-QLQLLDLSGNLLAEC-----------VGWHLKLGNIKTLKLAQNKIETL- 367 (490)
T ss_pred hhhccceeEEeccccceeee-hh-hhhcc-cceEeecccchhHhh-----------hhhHhhhcCEeeeehhhhhHhhh-
Confidence 33345555555555555421 11 22222 455555555554321 11223344555555555555421
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccc
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFI 341 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 341 (549)
..+..+-+|..|++++|++..... ....++++-|+.+.+.+|++.
T Consensus 368 -SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 368 -SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred -hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCcc
Confidence 234444455555555555544321 112255555666666666554
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.1e-11 Score=113.57 Aligned_cols=242 Identities=21% Similarity=0.201 Sum_probs=128.2
Q ss_pred ccEEEccCCcCCCCCC-------CCCCCcceeecccC---CCCCcCchh-------hhcCCCCCeEeCcCCcCCCcCCcc
Q 040238 176 LLTFDLSSNNLQGPLP-------VPPPGTIHYLASNN---SLTGEIPSW-------ICNLNILESLVLSHNNLSGLLPQC 238 (549)
Q Consensus 176 L~~L~L~~n~l~~~~~-------~~~~~L~~L~l~~n---~~~~~~~~~-------l~~l~~L~~L~Ls~n~l~~~~~~~ 238 (549)
+++++|++|.+..... ...+.|+..++++- +...++|.. +.+++.|++++||.|.+.-..+..
T Consensus 32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~ 111 (382)
T KOG1909|consen 32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG 111 (382)
T ss_pred eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence 7888888887753211 11345555555432 222344433 345567777777777766444443
Q ss_pred hhcC---CCCCCeeecCCCccCCcCCCcccc---cCCCCccccCCCCCcEEEccCCcCCCCc----CcccCCCCCCCEEE
Q 040238 239 LGNS---SDELSVLDLQGNNFFGTIPNTFIK---ERRIPRSLINCSKLEFLGLGNNQISDTF----PSWLGTLPNLNVLI 308 (549)
Q Consensus 239 ~~~~---~~~L~~L~L~~n~l~~~~~~~~~~---~~~l~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ 308 (549)
+..+ ...|++|.|.+|.+...-...+.+ .-...+....-+.|+++..+.|++.... ...|...+.|+.+.
T Consensus 112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr 191 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR 191 (382)
T ss_pred HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE
Confidence 3322 225777777777664322111100 0001112233456667766666665321 23345556666666
Q ss_pred ccCcccccccC--CCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCE
Q 040238 309 LRSNIFYGIIK--EPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQV 386 (549)
Q Consensus 309 L~~n~l~~~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 386 (549)
++.|.+..... ....+.+++.|+.||+.+|-++..-.. .+...+..+++|+.
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--------------------------~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--------------------------ALAKALSSWPHLRE 245 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH--------------------------HHHHHhcccchhee
Confidence 66665532211 111234555555555555554321111 13345566777777
Q ss_pred EEccCCccccCCCccc-----CCCCCCCEeeCCCCccccc----CCcCccCCCCCcEEecccCcCc
Q 040238 387 LNLQNNSLQGHIPSCL-----GNLPNLESLDLSNNKFSGQ----IPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 387 L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
|++++|.+...-..+| ...|+|+.|.+.+|.++.. +...+...+.|..|++++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 7777777764332222 3457888888888877632 2233455778888888888873
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=1.1e-09 Score=110.17 Aligned_cols=111 Identities=37% Similarity=0.465 Sum_probs=62.8
Q ss_pred cCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCc
Q 040238 217 NLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS 296 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~ 296 (549)
..+.|+.|++++|.+. .+|..... +..|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+.
T Consensus 184 ~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-----------~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 184 NLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-----------ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-----------ecchhhhhcccccccccCCceeee-ccc
Confidence 4556666666666665 44443211 214666666666422 123334556666666666666653 244
Q ss_pred ccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccC
Q 040238 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP 345 (549)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 345 (549)
.++.+++++.|++++|.+..+.. +..+.+++.|++++|.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccccc----ccccCccCEEeccCccccccch
Confidence 55666667777777776666543 2556667777777766654444
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=2.7e-10 Score=80.60 Aligned_cols=61 Identities=41% Similarity=0.671 Sum_probs=44.6
Q ss_pred CCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcC
Q 040238 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 442 (549)
++|++|++++|+++...++.|.++++|+.|++++|+++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777755556777777777777777777766677777777777777777764
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=8.6e-11 Score=105.46 Aligned_cols=131 Identities=27% Similarity=0.343 Sum_probs=90.7
Q ss_pred CCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccc
Q 040238 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 278 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
..|+++|+++|.|+ .+.++..-.|.++.|++++|++..+.. ...+++|+.||+|+|.++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~Ls---------------- 342 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNLLA---------------- 342 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccchhH----------------
Confidence 46778888888777 455566667778888888887766532 245677777777777653
Q ss_pred cccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccC-CcCccCCCCCcEEe
Q 040238 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQI-PQQLVELTFLEFFN 436 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 436 (549)
.+.++=..+.+.++|.|++|.+... ..++.+-+|..||+++|+|.... -..++++|-|+.+.
T Consensus 343 ---------------~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 343 ---------------ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ---------------hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 2233444566788888888877632 44677778888888888886432 24678888888888
Q ss_pred cccCcCcccC
Q 040238 437 VSDNHLTGLI 446 (549)
Q Consensus 437 l~~N~l~~~~ 446 (549)
+.+|++.+.+
T Consensus 406 L~~NPl~~~v 415 (490)
T KOG1259|consen 406 LTGNPLAGSV 415 (490)
T ss_pred hcCCCccccc
Confidence 8888887553
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=8.6e-10 Score=77.98 Aligned_cols=59 Identities=27% Similarity=0.367 Sum_probs=30.6
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCc
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNR 84 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~ 84 (549)
+|++|++++|++..+.++.|.++++|++|++++|.++...+.. |..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA--FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT--TTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH--HcCCCCCCEEeCcCCc
Confidence 4555555555555554455555555555555555555333333 5555555555555553
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=9.6e-10 Score=110.85 Aligned_cols=153 Identities=27% Similarity=0.311 Sum_probs=103.4
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.+..++.+.+..|.+.. ....+..+.+|+.|++..|.|..... . +..+++|++|++++|.|+.+.... .+..|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~--l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-L--LSSLVNLQVLDLSFNKITKLEGLS---TLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhccc-c--hhhhhcchheeccccccccccchh---hccch
Confidence 45667777777777764 22446778888888888888873332 1 467788888888888887776665 34568
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
+.|++++|.+..+. .+..+..|+.+++++|.+....+.... .+.+++.+++.+|.+..+...... .. +..++
T Consensus 143 ~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~--~~~~l~~l~l~~n~i~~i~~~~~~---~~--l~~~~ 214 (414)
T KOG0531|consen 143 KELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELS--ELISLEELDLGGNSIREIEGLDLL---KK--LVLLS 214 (414)
T ss_pred hhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhh--hccchHHHhccCCchhcccchHHH---HH--HHHhh
Confidence 88888888887765 355578888888888888754441023 678888888888887765443111 11 44446
Q ss_pred ccCCcCCC
Q 040238 181 LSSNNLQG 188 (549)
Q Consensus 181 L~~n~l~~ 188 (549)
+..|.+..
T Consensus 215 l~~n~i~~ 222 (414)
T KOG0531|consen 215 LLDNKISK 222 (414)
T ss_pred ccccccee
Confidence 66666553
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=2.2e-09 Score=108.27 Aligned_cols=124 Identities=24% Similarity=0.186 Sum_probs=58.2
Q ss_pred ccEEEccCCcCCCCCC--CCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCC
Q 040238 176 LLTFDLSSNNLQGPLP--VPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQG 253 (549)
Q Consensus 176 L~~L~L~~n~l~~~~~--~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 253 (549)
++.+.+..|.+..... ..+.+++.+++.+|.+..... .+..+++|++|++++|.|+...+- ..+. .|+.|++++
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l--~~l~-~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGL--STLT-LLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccch--hhcc-chhhheecc
Confidence 5566666666654222 235555555555555553221 134455555555555555533221 1111 355555555
Q ss_pred CccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC-cccCCCCCCCEEEccCccccc
Q 040238 254 NNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSNIFYG 316 (549)
Q Consensus 254 n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 316 (549)
|.++... .+..++.|+.+++++|+++...+ . ...+.+++.+.+.+|.+..
T Consensus 150 N~i~~~~------------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 150 NLISDIS------------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred Ccchhcc------------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 5554321 12234555555555555543322 1 2344455555555554433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=7.9e-09 Score=111.45 Aligned_cols=293 Identities=22% Similarity=0.189 Sum_probs=146.5
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCc--CccccCchhhcCCCCCCCeEeccCCccceeeccCCCc-CCCC
Q 040238 23 RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS--YRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT-TSQK 99 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~~ 99 (549)
...|...+-+|.+.... .. ..++.|++|-+..|. +. .++.. +|..++.|++|||++| ......|... .+.+
T Consensus 523 ~~~rr~s~~~~~~~~~~-~~-~~~~~L~tLll~~n~~~l~-~is~~-ff~~m~~LrVLDLs~~--~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA-GS-SENPKLRTLLLQRNSDWLL-EISGE-FFRSLPLLRVLDLSGN--SSLSKLPSSIGELVH 596 (889)
T ss_pred hheeEEEEeccchhhcc-CC-CCCCccceEEEeecchhhh-hcCHH-HHhhCcceEEEECCCC--CccCcCChHHhhhhh
Confidence 55677777776665322 22 133367777777775 33 33433 5677777777777776 5544444443 4677
Q ss_pred CCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 100 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
||+|+++++.+..+|..+.++..|.+|++..+.-....|.... .+++|++|.+............. .....++|+.+
T Consensus 597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~--~L~~Lr~L~l~~s~~~~~~~~l~-el~~Le~L~~l 673 (889)
T KOG4658|consen 597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL--ELQSLRVLRLPRSALSNDKLLLK-ELENLEHLENL 673 (889)
T ss_pred hhcccccCCCccccchHHHHHHhhheeccccccccccccchhh--hcccccEEEeeccccccchhhHH-hhhcccchhhh
Confidence 7777777777777777777777777777777665445555554 57777777776554211111000 00111113333
Q ss_pred EccCCcCCCCC-CCCCCCc----ceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcC-----CCCCCee
Q 040238 180 DLSSNNLQGPL-PVPPPGT----IHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNS-----SDELSVL 249 (549)
Q Consensus 180 ~L~~n~l~~~~-~~~~~~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-----~~~L~~L 249 (549)
........... ......| +.+.+.++.. ...+..+..+.+|+.|.+.++.+........... .+++..+
T Consensus 674 s~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 674 SITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred eeecchhHhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 32221110000 0011111 1222222211 2334456677888888888887753222111110 0012222
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (549)
.+.++... .-+.+..-.++|+.|++..+.....+......+..+..+.+..+.+.+.. .......+++
T Consensus 753 ~~~~~~~~-----------r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~-~~~~l~~l~~ 820 (889)
T KOG4658|consen 753 SILNCHML-----------RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLR-MLCSLGGLPQ 820 (889)
T ss_pred Hhhccccc-----------cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccce-eeecCCCCce
Confidence 22222111 11233344678888888887766555544455555555555555554441 0111134455
Q ss_pred CceeeCCC
Q 040238 330 LRIIDLSN 337 (549)
Q Consensus 330 L~~L~ls~ 337 (549)
+..+.+++
T Consensus 821 i~~~~l~~ 828 (889)
T KOG4658|consen 821 LYWLPLSF 828 (889)
T ss_pred eEecccCc
Confidence 55444443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.65 E-value=2.1e-08 Score=108.18 Aligned_cols=312 Identities=18% Similarity=0.161 Sum_probs=160.4
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCc--CCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEe
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCN--VSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLA 79 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~ 79 (549)
|...+.+|.+. .++.. ..+++|++|-+..|. +.....++|..++.|+.||+++|.--+.+|.. ++.+-+|++|+
T Consensus 526 rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~ 601 (889)
T KOG4658|consen 526 RRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLD 601 (889)
T ss_pred eEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH--Hhhhhhhhccc
Confidence 34445555554 22222 234578888888875 55555566788888888888877665677777 78888888888
Q ss_pred ccCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCcCC--CCCCcccccccCCCCcEEEccC
Q 040238 80 LSLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQ--GKVPKWLLDPNMQNLNALNISH 156 (549)
Q Consensus 80 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~l~~L~~L~L~~ 156 (549)
+++..++.+|.... ++..|.+|++..+.. ..+|.....+.+|++|.+...... ......+. .+.+|+.+....
T Consensus 602 L~~t~I~~LP~~l~--~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 602 LSDTGISHLPSGLG--NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITI 677 (889)
T ss_pred ccCCCccccchHHH--HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeec
Confidence 88887776655432 567888888887754 445555666888888888766422 11122222 334444443322
Q ss_pred CcCCCCCCccccccCCCCCc----cEEEccCCcCCCCCC--CCCCCcceeecccCCCCCcCchhhhc------CCCCCeE
Q 040238 157 NFLTGFDQHLVVLPANKGDL----LTFDLSSNNLQGPLP--VPPPGTIHYLASNNSLTGEIPSWICN------LNILESL 224 (549)
Q Consensus 157 n~~~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~~~~--~~~~~L~~L~l~~n~~~~~~~~~l~~------l~~L~~L 224 (549)
... ..... ....++| +.+.+.++....... ..+.+|+.|.+.++.+......+... ++++..+
T Consensus 678 ~s~-~~~e~----l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 678 SSV-LLLED----LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred chh-HhHhh----hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 211 00000 0000001 122222222221111 12677888888888776443333221 2334444
Q ss_pred eCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCC-cCcccCCCCC
Q 040238 225 VLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT-FPSWLGTLPN 303 (549)
Q Consensus 225 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~ 303 (549)
.+.++..... +.. ....++|+.|.+..+.....+.+. ...+..+..+.+..+.+.+. .-...+++++
T Consensus 753 ~~~~~~~~r~-l~~-~~f~~~L~~l~l~~~~~~e~~i~~----------~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 753 SILNCHMLRD-LTW-LLFAPHLTSLSLVSCRLLEDIIPK----------LKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred Hhhccccccc-cch-hhccCcccEEEEecccccccCCCH----------HHHhhhcccEEecccccccceeeecCCCCce
Confidence 4444433211 111 123457889988887665443322 23344444444455444433 2233444444
Q ss_pred CCEEEccCcccccccCCC-CCccCCCCCceeeCCCC
Q 040238 304 LNVLILRSNIFYGIIKEP-RTDCGFSKLRIIDLSNN 338 (549)
Q Consensus 304 L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~ls~n 338 (549)
+..+.+..=.+....... .....+|.+..+.+.+|
T Consensus 821 i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 821 LYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred eEecccCccchhheehhcCcccccCccccccceecc
Confidence 444444443322221111 11134566666666654
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=8.9e-09 Score=92.67 Aligned_cols=190 Identities=20% Similarity=0.177 Sum_probs=100.3
Q ss_pred cCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCc
Q 040238 210 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQ 289 (549)
Q Consensus 210 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~ 289 (549)
++...+..+|.|+.|+++.|.+...+..--... .+|+.|.|.|..+.-...+++ +..+|.+++|+++.|.
T Consensus 88 eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~-~nl~~lVLNgT~L~w~~~~s~---------l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 88 EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL-KNLRVLVLNGTGLSWTQSTSS---------LDDLPKVTELHMSDNS 157 (418)
T ss_pred HHHHHHhcCccceEeeccCCcCCCccccCcccc-cceEEEEEcCCCCChhhhhhh---------hhcchhhhhhhhccch
Confidence 344456789999999999998874432211122 278899998887754333322 5677888888888885
Q ss_pred CCCCcC--ccc-CCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEcc
Q 040238 290 ISDTFP--SWL-GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILS 366 (549)
Q Consensus 290 l~~~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~ 366 (549)
+..... +.. ..-+.+++++...|...-.....-...-++++..+-+..|++...-..
T Consensus 158 ~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-------------------- 217 (418)
T KOG2982|consen 158 LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-------------------- 217 (418)
T ss_pred hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc--------------------
Confidence 432111 111 122345555555554322111111112344555555554443221111
Q ss_pred CCcCcccCchhhcCCCCCCEEEccCCccccC-CCcccCCCCCCCEeeCCCCcccccCCc------CccCCCCCcEEecc
Q 040238 367 NNSFDSVIPASIANLKGLQVLNLQNNSLQGH-IPSCLGNLPNLESLDLSNNKFSGQIPQ------QLVELTFLEFFNVS 438 (549)
Q Consensus 367 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~ 438 (549)
..+..++.+--|+|+.|+|.+- .-+++..+++|..|.+++|++...... .++.+++++.|+=+
T Consensus 218 ---------k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 218 ---------KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ---------ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 2234445555666666666531 124456667777777777766543322 23455666666543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.7e-09 Score=96.00 Aligned_cols=178 Identities=21% Similarity=0.164 Sum_probs=100.6
Q ss_pred CCCEEEccCCcCCc-cccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCC---cCCCC
Q 040238 24 SLEAIHIAKCNVSG-QITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSN---TTSQK 99 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---~~~~~ 99 (549)
+|++||||+..++. ..-..+..|.+|+.|++.++++...+-.. +.+-.+|+.|+++.+ +-+...... ..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~--iAkN~~L~~lnlsm~--sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT--IAKNSNLVRLNLSMC--SGFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH--Hhccccceeeccccc--cccchhHHHHHHHhhhh
Confidence 57777777776652 22344566777777777777776555444 667777788887776 333333222 26777
Q ss_pred CCEEEccCCCC-CC-CChhhcC-CCCccEEEeecCc--CCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCC
Q 040238 100 LKYIGLRSCNL-TK-FPNFLQN-QYHLLVLDLSDNR--IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKG 174 (549)
Q Consensus 100 L~~L~l~~n~l-~~-l~~~l~~-l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~ 174 (549)
|..|+++.|.+ +. +...+.. -++|+.|+++|+. +.......+. ..+++|.+|||+.|..-...-...+...+.
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~-~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~- 339 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFKFNY- 339 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH-HhCCceeeeccccccccCchHHHHHHhcch-
Confidence 77777777765 22 2112222 2467777777764 1111111221 267778888887765433221112222333
Q ss_pred CccEEEccCCcCCCC----CCCCCCCcceeecccCCCC
Q 040238 175 DLLTFDLSSNNLQGP----LPVPPPGTIHYLASNNSLT 208 (549)
Q Consensus 175 ~L~~L~L~~n~l~~~----~~~~~~~L~~L~l~~n~~~ 208 (549)
|++|.++.|..... .....|++.+|++.++--.
T Consensus 340 -L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 340 -LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred -heeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 77888877754321 1123678888887776443
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.2e-09 Score=96.49 Aligned_cols=85 Identities=28% Similarity=0.318 Sum_probs=36.3
Q ss_pred CCeEeccCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCc-CCCCCCcccccccCCCCcEE
Q 040238 75 LEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNR-IQGKVPKWLLDPNMQNLNAL 152 (549)
Q Consensus 75 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L 152 (549)
|++||||...|+.-.-......|.+|+.|++.++++ ..+-..+..-.+|+.|+++.+. ++......+. ..+..|+.|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~-~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL-SSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHH-HhhhhHhhc
Confidence 455555544333222221112445555555555554 3333344444555555555432 2211111111 145555555
Q ss_pred EccCCcCC
Q 040238 153 NISHNFLT 160 (549)
Q Consensus 153 ~L~~n~~~ 160 (549)
++++|...
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.44 E-value=7e-09 Score=104.10 Aligned_cols=128 Identities=23% Similarity=0.140 Sum_probs=87.7
Q ss_pred CCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCc
Q 040238 97 SQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL 176 (549)
Q Consensus 97 ~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L 176 (549)
...|...+.+.|.+..+...+.-++.++.|+|++|+++... .+. .+++|++|||++|.+..++.... ..+ .|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l~~-~gc---~L 234 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQLSM-VGC---KL 234 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHH--hcccccccccccchhccccccch-hhh---hh
Confidence 34677888888888888888888889999999999987433 555 78999999999998887765421 111 28
Q ss_pred cEEEccCCcCCCCCCC-CCCCcceeecccCCCCCcC-chhhhcCCCCCeEeCcCCcCC
Q 040238 177 LTFDLSSNNLQGPLPV-PPPGTIHYLASNNSLTGEI-PSWICNLNILESLVLSHNNLS 232 (549)
Q Consensus 177 ~~L~L~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~ 232 (549)
..|.+++|.++..... .+.+|+.||++.|-+.+.- -..+..+..|+.|+|.+|.+.
T Consensus 235 ~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888877643222 2566666677766665421 122344556666777777664
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=2.6e-08 Score=89.78 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCCCEEEccCCcCCccc-ccccc-CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 23 RSLEAIHIAKCNVSGQI-TSSLR-NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~-~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
..++-|.+.++.|...- -+.|+ .+++++.+||.+|.|+.-.....++.++|.|++|+++.|.+........ ....+|
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl 123 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNL 123 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccce
Confidence 34456666666665321 12233 4678888888888887443333356788888888888886554332221 245678
Q ss_pred CEEEccCCCC--CCCChhhcCCCCccEEEeecCcCC
Q 040238 101 KYIGLRSCNL--TKFPNFLQNQYHLLVLDLSDNRIQ 134 (549)
Q Consensus 101 ~~L~l~~n~l--~~l~~~l~~l~~L~~L~l~~n~l~ 134 (549)
+.|-|.+..+ +.....+..++.++.|.++.|.+.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 8888888766 445556677778888888877543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=7.8e-09 Score=103.77 Aligned_cols=122 Identities=25% Similarity=0.270 Sum_probs=72.8
Q ss_pred EECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCC
Q 040238 4 LYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLN 83 (549)
Q Consensus 4 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n 83 (549)
.+.++|.+. .+-+++.-++.|+.|+|++|++.... .+..+++|++|||++|.+...-... ...++ |+.|.+++|
T Consensus 169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLS--MVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccc--hhhhh-heeeeeccc
Confidence 345566654 44455666677777777777776543 5667777777777777766333223 33333 777777777
Q ss_pred ccceeeccCCCcCCCCCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCC
Q 040238 84 RLSVLTKATSNTTSQKLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQ 134 (549)
Q Consensus 84 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~ 134 (549)
.++.+.... ++.+|+.||+++|-+.... ..+..+..|+.|.|.||++.
T Consensus 243 ~l~tL~gie---~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTLRGIE---NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhhhhHH---hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 555554433 5666777777777653322 13455566677777777654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=4e-08 Score=78.21 Aligned_cols=81 Identities=28% Similarity=0.428 Sum_probs=45.9
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+..+|++|.+....+..-..++.+++|++++|.++ .+|+.+..++.|+.|+++.|++. ..|..+..+.+|-.|+..+|
T Consensus 56 ~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 56 TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 33444444444333222233445666666666666 55555666666666666666666 45555555666666666666
Q ss_pred cCc
Q 040238 441 HLT 443 (549)
Q Consensus 441 ~l~ 443 (549)
.+.
T Consensus 134 a~~ 136 (177)
T KOG4579|consen 134 ARA 136 (177)
T ss_pred ccc
Confidence 554
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.10 E-value=5.6e-06 Score=70.86 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=68.9
Q ss_pred CCEEEccCCcCCcccccccc-CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 25 LEAIHIAKCNVSGQITSSLR-NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 25 L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
=+.++|.+.++..... ++ -..+...+||+.|.+. ..+ .|..++.|.+|.+++|+|+.+...... .+++|+.|
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~-~l~---~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L 93 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR-KLD---NLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTL 93 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchh-hcc---cCCCccccceEEecCCcceeeccchhh-hccccceE
Confidence 3555555554432211 22 2334566677776665 111 256666677777777766666555433 35667777
Q ss_pred EccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCC---cccccccCCCCcEEEccC
Q 040238 104 GLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVP---KWLLDPNMQNLNALNISH 156 (549)
Q Consensus 104 ~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~L~~ 156 (549)
.+.+|.+..+.+ .+..++.|++|.+-+|+++..-- -.+. .+|+|+.||+..
T Consensus 94 ~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~--klp~l~~LDF~k 149 (233)
T KOG1644|consen 94 ILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY--KLPSLRTLDFQK 149 (233)
T ss_pred EecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE--ecCcceEeehhh
Confidence 777776644432 45566677777777776652211 1223 567777777754
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.04 E-value=1.1e-07 Score=89.93 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=44.0
Q ss_pred CCCEEEccCCcCCccc--cccccCCCCCCEEeCCCCcC-ccccCchhhcCCCCCCCeEeccCCccceeeccCCC---cCC
Q 040238 24 SLEAIHIAKCNVSGQI--TSSLRNLSQLFFLDLAKNSY-RGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSN---TTS 97 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~--~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---~~~ 97 (549)
.|+.|.+.++.-.+.- -..-.+++++++|++.++.. +...-.+ +-..+++|++|++..| ..+...... ..+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c--~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSC--SSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhccc--chhHHHHHHHHHHhh
Confidence 4556666555332211 12223556666665555432 1111111 2244556666666554 222222111 145
Q ss_pred CCCCEEEccCCCC---CCCChhhcCCCCccEEEeec
Q 040238 98 QKLKYIGLRSCNL---TKFPNFLQNQYHLLVLDLSD 130 (549)
Q Consensus 98 ~~L~~L~l~~n~l---~~l~~~l~~l~~L~~L~l~~ 130 (549)
++|++++++.|.- ..+.....++..++.+.+.|
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence 5555555555532 12223334444444444444
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=1.9e-07 Score=74.41 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=67.9
Q ss_pred EEECCCCCCCCc--ccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 3 FLYLRLNNFSGD--LLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 3 ~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
.+||+.|++-.+ .+..+.+..+|+..+|++|.+.+..+..-...+.++.|++++|.|. .+|.. +..++.|+.|++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE--~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEE--LAAMPALRSLNL 107 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHH--HhhhHHhhhccc
Confidence 355666654311 2233445556666666666666444333344556666666666666 66666 666666666666
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQ 134 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~ 134 (549)
+.|.+...+.... .+.++-.|+..+|....+|..+..-+..-..++.++++.
T Consensus 108 ~~N~l~~~p~vi~--~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 108 RFNPLNAEPRVIA--PLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred ccCccccchHHHH--HHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccc
Confidence 6665555444322 245556666666666555544333333333333444443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=4.3e-06 Score=53.93 Aligned_cols=36 Identities=53% Similarity=0.821 Sum_probs=19.0
Q ss_pred CCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 383 GLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 383 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555555
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=7e-07 Score=79.68 Aligned_cols=226 Identities=19% Similarity=0.172 Sum_probs=121.0
Q ss_pred hcCCCCCeEeCcCCcCCCcCCcchhcCCC---CCCeeecCCCccCCcCCCcccc-cCCCCccccCCCCCcEEEccCCcCC
Q 040238 216 CNLNILESLVLSHNNLSGLLPQCLGNSSD---ELSVLDLQGNNFFGTIPNTFIK-ERRIPRSLINCSKLEFLGLGNNQIS 291 (549)
Q Consensus 216 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~-~~~l~~~l~~~~~L~~L~l~~n~l~ 291 (549)
..+..+.+++||+|.+......++..... +|+..+++.- ++|...+.+.. ..-+.+.+-.||+|++.++|+|-+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34566777777777766544444433222 4444444432 22211111100 0112234567888888888888776
Q ss_pred CCcCc----ccCCCCCCCEEEccCcccccccCCCCC-----------ccCCCCCceeeCCCCccccccChh-hhhccccc
Q 040238 292 DTFPS----WLGTLPNLNVLILRSNIFYGIIKEPRT-----------DCGFSKLRIIDLSNNIFIGTLPLK-SFLCWNAM 355 (549)
Q Consensus 292 ~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------~~~l~~L~~L~ls~n~l~~~~~~~-~~~~l~~l 355 (549)
...|. .++.-..|++|.+++|.+..+....+. ...-+.|+..+...|++.. .|.. +...+.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~s- 183 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLES- 183 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHh-
Confidence 54443 345567788888888876443222211 1245678888888877632 1111 1111111
Q ss_pred cccccceEEccCCcCcccC-----chhhcCCCCCCEEEccCCccccC----CCcccCCCCCCCEeeCCCCcccccCCcC-
Q 040238 356 KIVNTTGIILSNNSFDSVI-----PASIANLKGLQVLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSGQIPQQ- 425 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~- 425 (549)
.-+++.+.+..|.|.-.- -..+..+.+|+.|||..|-++.. +..++...+.|++|.+.+|-++..-...
T Consensus 184 -h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 184 -HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred -hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 123367777777765331 11234567788888888877622 2234455566788888888776432222
Q ss_pred ---cc--CCCCCcEEecccCcCccc
Q 040238 426 ---LV--ELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 426 ---~~--~l~~L~~L~l~~N~l~~~ 445 (549)
|. ..++|..|-..+|...+.
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCc
Confidence 22 246677777777755543
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.98 E-value=2.5e-06 Score=76.21 Aligned_cols=210 Identities=15% Similarity=0.080 Sum_probs=100.1
Q ss_pred CCCCCCEEEccCCcCCcccc----ccccCCCCCCEEeCCCCcCcccc----Cch-----hhcCCCCCCCeEeccCCccce
Q 040238 21 NLRSLEAIHIAKCNVSGQIT----SSLRNLSQLFFLDLAKNSYRGTI----KLD-----VLLTSWKNLEFLALSLNRLSV 87 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~----~~~-----~~~~~l~~L~~L~Ls~n~i~~ 87 (549)
-+..+..++||+|.|...-. ..+.+-.+|+..+++.- ++|.. +.. .++-+|++|+..+||+|-+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 35566666677666654322 22334455666665542 11111 110 124556667777777664433
Q ss_pred eeccCCC---cCCCCCCEEEccCCCCCCCCh-----h---------hcCCCCccEEEeecCcCCCCCCcccccc---cCC
Q 040238 88 LTKATSN---TTSQKLKYIGLRSCNLTKFPN-----F---------LQNQYHLLVLDLSDNRIQGKVPKWLLDP---NMQ 147 (549)
Q Consensus 88 ~~~~~~~---~~~~~L~~L~l~~n~l~~l~~-----~---------l~~l~~L~~L~l~~n~l~~~~~~~~~~~---~l~ 147 (549)
....+.. ..-..|.+|.+++|.++.+.. . ..+-+.|++.....|++. ..+...+.. .-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhc
Confidence 2211110 134566777777776644321 1 123466777777777764 222221100 114
Q ss_pred CCcEEEccCCcCCCC--CCccccccCCCCCccEEEccCCcCCCCCC-------CCCCCcceeecccCCCCCcCchhhh--
Q 040238 148 NLNALNISHNFLTGF--DQHLVVLPANKGDLLTFDLSSNNLQGPLP-------VPPPGTIHYLASNNSLTGEIPSWIC-- 216 (549)
Q Consensus 148 ~L~~L~L~~n~~~~~--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~~~L~~L~l~~n~~~~~~~~~l~-- 216 (549)
+|+.+.+..|.|... ..-.+.......+|+.||+..|.++..-. ..++.|+.|.+..|-++......+.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 677777777766532 11112222333347777777776653211 1133355555555554433222211
Q ss_pred ----cCCCCCeEeCcCCcCC
Q 040238 217 ----NLNILESLVLSHNNLS 232 (549)
Q Consensus 217 ----~l~~L~~L~Ls~n~l~ 232 (549)
..|+|..|-..+|.+.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhhcCCCccccccchhhhc
Confidence 1345555555555443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=4e-05 Score=74.65 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=27.0
Q ss_pred CCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCC-CCCCCChhhcCCCCccEEEeecC
Q 040238 71 SWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSC-NLTKFPNFLQNQYHLLVLDLSDN 131 (549)
Q Consensus 71 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n 131 (549)
.+.+++.|++++|.++.++.. ..+|++|.+++| .++.+|..+ ..+|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL-----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC-----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 345666666666655555422 234666666554 224444332 134555555544
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=1.1e-05 Score=69.12 Aligned_cols=125 Identities=23% Similarity=0.168 Sum_probs=94.9
Q ss_pred EEECCCCCCCCccccccc-CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 3 FLYLRLNNFSGDLLGSIG-NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
.+||.+.++..+.. ++ -......+||++|++... +.|..++.|..|.+++|+|+...|.- -..+++|+.|.|+
T Consensus 23 e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 23 ELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccch--hhhccccceEEec
Confidence 45555555542211 22 235688999999998743 45788999999999999999555543 4567889999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCCh----hhcCCCCccEEEeecCcC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN----FLQNQYHLLVLDLSDNRI 133 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~~n~l 133 (549)
+|+|..+++......|++|++|.+-+|.++.-+. .+..+++|++||+.+-..
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999999888777789999999999998855543 366789999999987553
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=5.3e-05 Score=73.79 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=49.4
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCC-cCCCC
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN-QISDT 293 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~ 293 (549)
+..+.+++.|++++|.++ .+| ..+++|++|.++++.--...|. .+ .++|++|++++| .+. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~----------~L--P~nLe~L~Ls~Cs~L~-s 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPG----------SI--PEGLEKLTVCHCPEIS-G 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCc----------hh--hhhhhheEccCccccc-c
Confidence 455788899999998777 566 2455799999987544333332 22 257888888887 443 3
Q ss_pred cCcccCCCCCCCEEEccCccc
Q 040238 294 FPSWLGTLPNLNVLILRSNIF 314 (549)
Q Consensus 294 ~~~~~~~l~~L~~L~L~~n~l 314 (549)
+| ++|+.|+++.+..
T Consensus 110 LP------~sLe~L~L~~n~~ 124 (426)
T PRK15386 110 LP------ESVRSLEIKGSAT 124 (426)
T ss_pred cc------cccceEEeCCCCC
Confidence 33 3577777766544
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.3e-05 Score=51.62 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=18.2
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCc
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR 60 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~ 60 (549)
+|++|++++|+++.. |..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCC
Confidence 455555555555533 233555555555555555554
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.85 E-value=5.3e-07 Score=85.31 Aligned_cols=116 Identities=24% Similarity=0.278 Sum_probs=61.7
Q ss_pred cCCCCCeEeCcCCcC-CCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCC--C
Q 040238 217 NLNILESLVLSHNNL-SGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD--T 293 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~--~ 293 (549)
.+..|+.|+.+++.- +...-..++...++|+.+.+.+++--+.... -..-.+++.|+.+++..+.... .
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f--------t~l~rn~~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF--------TMLGRNCPHLERLDLEECGLITDGT 363 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh--------hhhhcCChhhhhhcccccceehhhh
Confidence 466777887777543 3333334555556788888877753211110 0011456777888777765431 1
Q ss_pred cCcccCCCCCCCEEEccCccccccc---CCCCCccCCCCCceeeCCCCcc
Q 040238 294 FPSWLGTLPNLNVLILRSNIFYGII---KEPRTDCGFSKLRIIDLSNNIF 340 (549)
Q Consensus 294 ~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~l~~L~~L~ls~n~l 340 (549)
+.+.-.+++.|+.+.+++|...... ......+++..|+.+.+++++.
T Consensus 364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 2222235677777777777543321 0111124455666666666654
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.4e-05 Score=84.43 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=70.6
Q ss_pred CCCCEEEccCCcCC-cccccccc-CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 23 RSLEAIHIAKCNVS-GQITSSLR-NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~-~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.+|++|++++.... ...|..++ -+|.|+.|.+++-.+.... ......++++|..||+|+..++.+.... .+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl~GIS---~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNLSGIS---RLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCcHHHh---ccccH
Confidence 45666666664332 12222333 4566776666665553211 1123556666777777766665553322 45666
Q ss_pred CEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCC--Cccc--ccccCCCCcEEEccCCcCCC
Q 040238 101 KYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKV--PKWL--LDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 101 ~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~--~~~~l~~L~~L~L~~n~~~~ 161 (549)
+.|.+.+=.+..-. ..+.++++|++||+|........ ..-+ .+..+|+|+.||.+++.+..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 66666665554332 24566677777777665433111 1111 01146777777777665554
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=6.8e-06 Score=86.83 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=16.1
Q ss_pred CCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecC
Q 040238 96 TSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDN 131 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n 131 (549)
++++|..||+++++++.+ .++.++++|++|.+.+=
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL 205 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCC
Confidence 344444444444444444 34444444444444443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=4.6e-05 Score=68.30 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=40.2
Q ss_pred CCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc-CCCCCCEEEccCCCCCCCC--hhhcCCC
Q 040238 45 NLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT-TSQKLKYIGLRSCNLTKFP--NFLQNQY 121 (549)
Q Consensus 45 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~~L~~L~l~~n~l~~l~--~~l~~l~ 121 (549)
.+..|+.|++.+..++.... |-.+++|+.|+++.|............ .+++|+++++++|++..+. ..+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 34444555554444442111 344555566666555333332222222 3456666666666553211 1344455
Q ss_pred CccEEEeecCcCC
Q 040238 122 HLLVLDLSDNRIQ 134 (549)
Q Consensus 122 ~L~~L~l~~n~l~ 134 (549)
+|..|++..|..+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 5666666666554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.34 E-value=0.00061 Score=56.37 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=61.8
Q ss_pred cccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc
Q 040238 16 LGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT 95 (549)
Q Consensus 16 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 95 (549)
...|.++++|+.+.+.. .+..+...+|.++++|+.+.+..+ +. .++.. .|.++++|+.+.+.+ .+..++...+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~-~F~~~~~l~~i~~~~-~~~~i~~~~F~- 78 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDN-AFSNCKSLESITFPN-NLKSIGDNAFS- 78 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TT-TTTT-TT-EEEEETS-TT-EE-TTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-cccee-eeecccccccccccc-ccccccccccc-
Confidence 45677888888888875 566677778888888888888774 55 33332 478887888888865 45556554433
Q ss_pred CCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCC
Q 040238 96 TSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL 149 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 149 (549)
.+.+|+.+.+..+ +..++. .+.+. +++.+.+.. .+.......|. ++++|
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~--~~~~l 128 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFK--NCTKL 128 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-------
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccc--ccccC
Confidence 5778888887654 544443 44554 777777665 33334445555 55554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.27 E-value=0.00062 Score=56.36 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=28.7
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCC
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 337 (549)
+.++++|+.+.+.. .+.......|..+++|+.+.+.++ +..+....+ .++++++.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F--~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF--SNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT--TT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee--ecccccccccccc
Confidence 45667777777764 455455566777767777777664 444433332 5555566666543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00019 Score=64.48 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=86.4
Q ss_pred ccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCC--cCccccCchhhcCCCCCCCeEeccCCccceeeccC
Q 040238 15 LLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKN--SYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKAT 92 (549)
Q Consensus 15 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 92 (549)
+....-.+..|+.|++.+..+++. ..|-.+++|++|.++.| ++.+..+.. ..++++|++|++++|+|..+....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCCccccccccc
Confidence 444455677888888888877754 35677899999999999 555555544 577799999999999999877766
Q ss_pred CCcCCCCCCEEEccCCCCCCCCh----hhcCCCCccEEEeecC
Q 040238 93 SNTTSQKLKYIGLRSCNLTKFPN----FLQNQYHLLVLDLSDN 131 (549)
Q Consensus 93 ~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~~n 131 (549)
....+.+|..|++.+|..+.+.. .|.-+++|++||-...
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 66688899999999998765542 4566788888875543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=4.7e-05 Score=68.56 Aligned_cols=101 Identities=25% Similarity=0.271 Sum_probs=58.7
Q ss_pred CCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh--hhcCCCCc
Q 040238 46 LSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN--FLQNQYHL 123 (549)
Q Consensus 46 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L 123 (549)
+.+.+.|++-++.+. .+. +..+++.|++|.||-|+|+.+.... .|.+|++|+|..|.|.++.+ .+.++++|
T Consensus 18 l~~vkKLNcwg~~L~-DIs---ic~kMp~lEVLsLSvNkIssL~pl~---rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS---ICEKMPLLEVLSLSVNKISSLAPLQ---RCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCcc-HHH---HHHhcccceeEEeeccccccchhHH---HHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 345556666666555 222 3456666666666666665554432 45666777777766655553 56677777
Q ss_pred cEEEeecCcCCCCCCccccc---ccCCCCcEEE
Q 040238 124 LVLDLSDNRIQGKVPKWLLD---PNMQNLNALN 153 (549)
Q Consensus 124 ~~L~l~~n~l~~~~~~~~~~---~~l~~L~~L~ 153 (549)
+.|.|..|+-.+..+..... ..+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777777655544432210 1456776665
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=5.1e-05 Score=68.32 Aligned_cols=100 Identities=19% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCC
Q 040238 22 LRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLK 101 (549)
Q Consensus 22 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 101 (549)
+.+.+.|++-+|.+.++ .....++.|+.|.|+-|.|+...| +..|++|+.|.|..|.|..+.......++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 45677888888888765 345678888888888888874444 677888888888888888887776666888888
Q ss_pred EEEccCCCC-CCCC-----hhhcCCCCccEEE
Q 040238 102 YIGLRSCNL-TKFP-----NFLQNQYHLLVLD 127 (549)
Q Consensus 102 ~L~l~~n~l-~~l~-----~~l~~l~~L~~L~ 127 (549)
.|.|..|.- +.-+ .-++.+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888865 2222 1366788888876
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0042 Score=33.12 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=12.1
Q ss_pred CcEEECCCCCCCCcccccccC
Q 040238 1 LQFLYLRLNNFSGDLLGSIGN 21 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~ 21 (549)
||+|||++|+++ .+|+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 466777777666 45554544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.38 E-value=0.0026 Score=66.05 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=59.7
Q ss_pred CCCCCCEEEccCCcCCcc--ccccccCCCCCCEEeCCCC-cCccccC--chhhcCCCCCCCeEeccCCc-cceeeccCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQ--ITSSLRNLSQLFFLDLAKN-SYRGTIK--LDVLLTSWKNLEFLALSLNR-LSVLTKATSN 94 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~L~~L~Ls~n-~i~~~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~ 94 (549)
.++.|+.|.+.++.-... .-.....+++|+.|+++++ ......+ .......+++|+.|+++++. ++..+-....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 357777777776633222 2234456777777777652 1111111 01123455777777777764 3333222222
Q ss_pred cCCCCCCEEEccCCC-CC--CCChhhcCCCCccEEEeecCcC
Q 040238 95 TTSQKLKYIGLRSCN-LT--KFPNFLQNQYHLLVLDLSDNRI 133 (549)
Q Consensus 95 ~~~~~L~~L~l~~n~-l~--~l~~~l~~l~~L~~L~l~~n~l 133 (549)
..+++|++|.+.+|. ++ .+-.....+++|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 246677777766665 32 2223344566677777776653
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.33 E-value=0.0018 Score=67.22 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=17.2
Q ss_pred CCCCCeEeCcCCc-CCCcCCcchhcCCCCCCeeecCCCc
Q 040238 218 LNILESLVLSHNN-LSGLLPQCLGNSSDELSVLDLQGNN 255 (549)
Q Consensus 218 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~ 255 (549)
+++|+.|+++++. +++..-..+....++|++|.+.++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 4555555555554 3333333333333355555544443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.20 E-value=0.0073 Score=32.18 Aligned_cols=11 Identities=36% Similarity=0.609 Sum_probs=4.5
Q ss_pred CEEEccCCccc
Q 040238 385 QVLNLQNNSLQ 395 (549)
Q Consensus 385 ~~L~l~~n~l~ 395 (549)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.80 E-value=0.042 Score=27.09 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=3.7
Q ss_pred CCEEEccCCCCC
Q 040238 100 LKYIGLRSCNLT 111 (549)
Q Consensus 100 L~~L~l~~n~l~ 111 (549)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.73 E-value=0.00037 Score=70.64 Aligned_cols=88 Identities=25% Similarity=0.189 Sum_probs=41.9
Q ss_pred CCeEeCcCCcCCCcCCcchhcC---CCCCCeeecCCCccCCcCCCcccccCCCCccccCC-CCCcEEEccCCcCCCC---
Q 040238 221 LESLVLSHNNLSGLLPQCLGNS---SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC-SKLEFLGLGNNQISDT--- 293 (549)
Q Consensus 221 L~~L~Ls~n~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~--- 293 (549)
+..+.|.+|.+.......+... .+.|+.|++++|.+.+..... +...+... ..++.|++..|.++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~------l~~~l~~~~~~l~~L~l~~c~l~~~g~~ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARL------LCEGLRLPQCLLQTLELVSCSLTSEGAA 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHH------HHhhcccchHHHHHHHhhcccccccchH
Confidence 5666777776664433333222 125666667666665221111 11112222 3455566666655533
Q ss_pred -cCcccCCCCCCCEEEccCccc
Q 040238 294 -FPSWLGTLPNLNVLILRSNIF 314 (549)
Q Consensus 294 -~~~~~~~l~~L~~L~L~~n~l 314 (549)
+...+.....++.++++.|.+
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhcccchhHHHHHhccc
Confidence 223333455566666666654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.67 E-value=0.00067 Score=68.80 Aligned_cols=176 Identities=24% Similarity=0.196 Sum_probs=95.7
Q ss_pred hhhhcCCCCCeEeCcCCcCCCcCCcchhcCC----CCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCC
Q 040238 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSS----DELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN 288 (549)
Q Consensus 213 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n 288 (549)
..+...+.|+.|++++|.+.+..-..+.... ..++.|++..|.++..... .+.+.+.....++.++++.|
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~------~l~~~L~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA------PLAAVLEKNEHLTELDLSLN 182 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH------HHHHHHhcccchhHHHHHhc
Confidence 3455678888888888888744322222221 2466788888777654332 23455666788999999999
Q ss_pred cCCCC----cCcccC----CCCCCCEEEccCcccccccCCC--CCccCCCC-CceeeCCCCccccccChhhhhccccccc
Q 040238 289 QISDT----FPSWLG----TLPNLNVLILRSNIFYGIIKEP--RTDCGFSK-LRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 289 ~l~~~----~~~~~~----~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
.+... ++..+. ...++++|++.+|.++...... ......+. +..+++..|++.+. ++.
T Consensus 183 ~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~---g~~-------- 251 (478)
T KOG4308|consen 183 GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV---GVE-------- 251 (478)
T ss_pred ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH---HHH--------
Confidence 87421 222222 3556777777777665321110 11122233 44455555554322 000
Q ss_pred cccceEEccCCcCcccCchhhcCC-CCCCEEEccCCccccC----CCcccCCCCCCCEeeCCCCcccc
Q 040238 358 VNTTGIILSNNSFDSVIPASIANL-KGLQVLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSG 420 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 420 (549)
.....+..+ ..+++++++.|.+... +.+.+..++.++.|.+++|++..
T Consensus 252 ---------------~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 252 ---------------KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ---------------HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 111223333 4556666666666532 22344555667777777776653
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.91 E-value=0.2 Score=27.83 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=6.8
Q ss_pred CCCCEEEccCCccc
Q 040238 382 KGLQVLNLQNNSLQ 395 (549)
Q Consensus 382 ~~L~~L~l~~n~l~ 395 (549)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555554
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.91 E-value=0.2 Score=27.83 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=6.8
Q ss_pred CCCCEEEccCCccc
Q 040238 382 KGLQVLNLQNNSLQ 395 (549)
Q Consensus 382 ~~L~~L~l~~n~l~ 395 (549)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555554
No 78
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=90.77 E-value=0.94 Score=44.81 Aligned_cols=68 Identities=26% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC
Q 040238 121 YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192 (549)
Q Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 192 (549)
+.+++++++.|.+....|..+.+...+ +.++.|..+.-.-...........+.+++++.|.....+|.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 456777777777766666655432333 44444444321111011111222366677777766655553
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.65 E-value=0.18 Score=27.94 Aligned_cols=17 Identities=65% Similarity=0.921 Sum_probs=10.8
Q ss_pred CCCCCEeeCCCCccccc
Q 040238 405 LPNLESLDLSNNKFSGQ 421 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~ 421 (549)
+++|+.|+|++|+++..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35667777777776633
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.65 E-value=0.18 Score=27.94 Aligned_cols=17 Identities=65% Similarity=0.921 Sum_probs=10.8
Q ss_pred CCCCCEeeCCCCccccc
Q 040238 405 LPNLESLDLSNNKFSGQ 421 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~ 421 (549)
+++|+.|+|++|+++..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35667777777776633
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.07 E-value=0.01 Score=52.50 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=54.4
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.||++.|++.. ....|.-++.|..|+++.|.+. ..|..++.+..+..+++.+|..+ ..|.++...+.++++++-+|
T Consensus 45 tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 45 TVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence 445555555442 2334566677777777777776 66677777777777777777776 66777777777777777777
Q ss_pred cCc
Q 040238 441 HLT 443 (549)
Q Consensus 441 ~l~ 443 (549)
++.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.86 E-value=0.011 Score=52.30 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=76.3
Q ss_pred EECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCC
Q 040238 4 LYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLN 83 (549)
Q Consensus 4 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n 83 (549)
.|++-..++.+....+......+.||++.|.+... -..|.-++.|..|+++.|.+. -.|.+ ++....++.+++..|
T Consensus 23 c~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d--~~q~~e~~~~~~~~n 98 (326)
T KOG0473|consen 23 CDLSLSELSEIPVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKD--AKQQRETVNAASHKN 98 (326)
T ss_pred cCCCHHHhcccchhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhh--HHHHHHHHHHHhhcc
Confidence 34444455555556677888999999999987632 345667778889999999987 77888 888888999999998
Q ss_pred ccceeeccCCCcCCCCCCEEEccCCCC
Q 040238 84 RLSVLTKATSNTTSQKLKYIGLRSCNL 110 (549)
Q Consensus 84 ~i~~~~~~~~~~~~~~L~~L~l~~n~l 110 (549)
..+..+.... ..++++++++.++.+
T Consensus 99 ~~~~~p~s~~--k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 99 NHSQQPKSQK--KEPHPKKNEQKKTEF 123 (326)
T ss_pred chhhCCcccc--ccCCcchhhhccCcc
Confidence 7766655432 578899999888865
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.05 E-value=0.13 Score=44.74 Aligned_cols=61 Identities=20% Similarity=0.116 Sum_probs=30.5
Q ss_pred CCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 279 KLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 279 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
.++.+|-++..|..+..+.+..++.++.|.+.+|.-.+.-.....-.-.++|+.|++++|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 4455666666555555555555666666666655432221111111234566666666655
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.26 E-value=0.26 Score=26.70 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=6.1
Q ss_pred CCCCEEEccCCcCC
Q 040238 23 RSLEAIHIAKCNVS 36 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~ 36 (549)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555544
No 85
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=83.82 E-value=1.3 Score=38.86 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=12.7
Q ss_pred CceeeeehhhhhhhhhhHHHHHH
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNF 522 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~ 522 (549)
.+..|++|+++|++.+++|++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~ 57 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIV 57 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHH
Confidence 45566666666655544444443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.58 E-value=0.15 Score=44.51 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=39.2
Q ss_pred CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc---CCCCCCEEEccCC-CCCCCC-hhhcCCCC
Q 040238 48 QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT---TSQKLKYIGLRSC-NLTKFP-NFLQNQYH 122 (549)
Q Consensus 48 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~---~~~~L~~L~l~~n-~l~~l~-~~l~~l~~ 122 (549)
.++.+|-++..|...--.. +..++.++.|.+.+| ..+.+..... -.++|+.|++++| .|++-- ..+..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~--L~~l~~i~~l~l~~c--k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH--LRDLRSIKSLSLANC--KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHH--Hhccchhhhheeccc--cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 3555665555554322222 455555555556555 3332221110 3456666666666 333221 35566666
Q ss_pred ccEEEeec
Q 040238 123 LLVLDLSD 130 (549)
Q Consensus 123 L~~L~l~~ 130 (549)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66666654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.39 E-value=1.8 Score=24.06 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=7.0
Q ss_pred CCCeEeccCCcccee
Q 040238 74 NLEFLALSLNRLSVL 88 (549)
Q Consensus 74 ~L~~L~Ls~n~i~~~ 88 (549)
+|+.|+++.|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 444444444444443
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.34 E-value=1.7 Score=52.66 Aligned_cols=37 Identities=27% Similarity=0.144 Sum_probs=28.6
Q ss_pred eCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 412 DLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 412 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
||++|+|+...+..|..+++|+.|+|++|+|.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 5778888866666777788888888888888888764
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.03 E-value=7.6 Score=38.77 Aligned_cols=62 Identities=21% Similarity=0.104 Sum_probs=34.6
Q ss_pred CCcceeecccCCCCCcCchhh---hcCCCCCeEeCcCCcCCCc----CCcchhcCCCCCCeeecCCCccC
Q 040238 195 PGTIHYLASNNSLTGEIPSWI---CNLNILESLVLSHNNLSGL----LPQCLGNSSDELSVLDLQGNNFF 257 (549)
Q Consensus 195 ~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~ 257 (549)
.-+..+.++.+.......+.+ ..-+.+.+|++++|..... +|....... +++.+..+.|...
T Consensus 413 g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~-rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 413 GVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNC-RLRPIPDSLNLPE 481 (553)
T ss_pred ccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCC-ccCCCCCCCCCcc
Confidence 344555556565554433333 3457788999999876532 233322222 5666777766554
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.76 E-value=2 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=12.6
Q ss_pred CCCCEEEccCCCCCCCCh
Q 040238 98 QKLKYIGLRSCNLTKFPN 115 (549)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~ 115 (549)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777765
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.72 E-value=1.5 Score=44.36 Aligned_cols=68 Identities=24% Similarity=0.170 Sum_probs=42.9
Q ss_pred cCCCCCCCeEeccCCccceeeccCCCc-CCCCCCEEEccCC--CCCCCCh-hhcCCCCccEEEeecCcCCCC
Q 040238 69 LTSWKNLEFLALSLNRLSVLTKATSNT-TSQKLKYIGLRSC--NLTKFPN-FLQNQYHLLVLDLSDNRIQGK 136 (549)
Q Consensus 69 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~~L~~L~l~~n--~l~~l~~-~l~~l~~L~~L~l~~n~l~~~ 136 (549)
-.+.+.+..+.|++|++..+....... ..++|+.|+|++| .+..-++ .=.....|++|.+.||++...
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 356677777788888777666654333 5677888888888 3332221 111234678888888887643
No 92
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=74.29 E-value=4.6 Score=24.56 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=6.6
Q ss_pred hhhhhhhhhhHHHHH
Q 040238 507 GYAGGLVAGLVVGFN 521 (549)
Q Consensus 507 ~~~~~~~~~~~~~~~ 521 (549)
++.+++++++++.++
T Consensus 7 aIIv~V~vg~~iiii 21 (38)
T PF02439_consen 7 AIIVAVVVGMAIIII 21 (38)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444333
No 93
>PF15050 SCIMP: SCIMP protein
Probab=73.31 E-value=3.3 Score=32.35 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=14.2
Q ss_pred hhhHHHHHHhhhHHHHHHHhhhhhhHHH
Q 040238 514 AGLVVGFNFSTGIIGWILEKLGTQQKAT 541 (549)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (549)
|.+++++++| ...+|..|.-++|--++
T Consensus 19 vS~~lglIly-CvcR~~lRqGkkweiak 45 (133)
T PF15050_consen 19 VSVVLGLILY-CVCRWQLRQGKKWEIAK 45 (133)
T ss_pred HHHHHHHHHH-HHHHHHHHccccceecc
Confidence 3344444443 34568877666654444
No 94
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.45 E-value=4.2 Score=34.45 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=25.9
Q ss_pred CceeeeehhhhhhhhhhHHHHHHhhhHHHHHHHhhhhhhHHH
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKAT 541 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (549)
.|.-++.+..+|.++..+++.+.+|...+|.+..+++|++++
T Consensus 134 lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~~rR~~~ 175 (184)
T COG3216 134 LWGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFRERRRRS 175 (184)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777776666677776666566665555444433
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=70.20 E-value=5.5 Score=32.00 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=7.7
Q ss_pred ehhhhhhhhhhHHHHH
Q 040238 506 IGYAGGLVAGLVVGFN 521 (549)
Q Consensus 506 ~~~~~~~~~~~~~~~~ 521 (549)
+++++|+++|++.+++
T Consensus 67 ~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHH
Confidence 4455555555544333
No 96
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.97 E-value=7.8 Score=27.43 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=3.9
Q ss_pred hhhhhhHHHH
Q 040238 511 GLVAGLVVGF 520 (549)
Q Consensus 511 ~~~~~~~~~~ 520 (549)
++++|++++.
T Consensus 27 ~f~~G~llg~ 36 (68)
T PF06305_consen 27 AFLLGALLGW 36 (68)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.77 E-value=2.4 Score=43.06 Aligned_cols=15 Identities=27% Similarity=0.127 Sum_probs=8.0
Q ss_pred CCcEEecccCcCccc
Q 040238 431 FLEFFNVSDNHLTGL 445 (549)
Q Consensus 431 ~L~~L~l~~N~l~~~ 445 (549)
.|++|.+.||+++..
T Consensus 271 ~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTT 285 (585)
T ss_pred CHHHeeecCCccccc
Confidence 355555555555533
No 98
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=65.94 E-value=6.7 Score=23.87 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=10.7
Q ss_pred hhhhhhhHHHHHHhhhHHHHHH
Q 040238 510 GGLVAGLVVGFNFSTGIIGWIL 531 (549)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~ 531 (549)
.+.++++++++.+......+|.
T Consensus 6 IaIIv~V~vg~~iiii~~~~Ya 27 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYA 27 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444443433
No 99
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.75 E-value=5 Score=22.65 Aligned_cols=14 Identities=64% Similarity=0.980 Sum_probs=8.1
Q ss_pred CCCCEeeCCCCccc
Q 040238 406 PNLESLDLSNNKFS 419 (549)
Q Consensus 406 ~~L~~L~l~~n~l~ 419 (549)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666554
No 100
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.68 E-value=17 Score=25.69 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=5.1
Q ss_pred hhhhhhhHHHHHH
Q 040238 510 GGLVAGLVVGFNF 522 (549)
Q Consensus 510 ~~~~~~~~~~~~~ 522 (549)
..+++.+++++++
T Consensus 22 l~il~~f~~G~ll 34 (68)
T PF06305_consen 22 LLILIAFLLGALL 34 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 101
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=58.96 E-value=5.5 Score=29.52 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=16.9
Q ss_pred HhhhHHHHHHHhhhhhhHHHHhhhh
Q 040238 522 FSTGIIGWILEKLGTQQKATRRRRR 546 (549)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~r~~~ 546 (549)
++|....|+.|-+-...|+||-|..
T Consensus 50 ~~YL~y~~fLkDlIlv~KAkrqrsT 74 (91)
T PF01708_consen 50 CLYLAYTWFLKDLILVLKAKRQRST 74 (91)
T ss_pred HHHHHHHHHHHHHhheeeeccCCce
Confidence 3444567888888777777766654
No 102
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=58.29 E-value=11 Score=27.82 Aligned_cols=10 Identities=0% Similarity=-0.017 Sum_probs=3.9
Q ss_pred HhhhhhhHHH
Q 040238 532 EKLGTQQKAT 541 (549)
Q Consensus 532 ~~~~~~~~~~ 541 (549)
+++.+|.|+|
T Consensus 53 vCC~kRkrsR 62 (94)
T PF05393_consen 53 VCCKKRKRSR 62 (94)
T ss_pred HHHHHhhhcc
Confidence 3444443333
No 103
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=57.12 E-value=7.1 Score=31.38 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=16.0
Q ss_pred ehhhhhhhhhhHHHHHHhhhHHHHHH
Q 040238 506 IGYAGGLVAGLVVGFNFSTGIIGWIL 531 (549)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (549)
.+...++++|++.+++..+....|+.
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777665444444
No 104
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=54.07 E-value=12 Score=31.20 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=7.3
Q ss_pred eeeehhhhhhhhhhHH
Q 040238 503 IILIGYAGGLVAGLVV 518 (549)
Q Consensus 503 ~~~~~~~~~~~~~~~~ 518 (549)
-++||+++|+++.+++
T Consensus 49 nIVIGvVVGVGg~ill 64 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILL 64 (154)
T ss_pred cEEEEEEecccHHHHH
Confidence 3445555554444333
No 105
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=50.87 E-value=16 Score=35.97 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.0
Q ss_pred hhhhhHHH
Q 040238 534 LGTQQKAT 541 (549)
Q Consensus 534 ~~~~~~~~ 541 (549)
++.|.+++
T Consensus 304 ~g~~~~~~ 311 (354)
T PF05795_consen 304 FGSWFNRR 311 (354)
T ss_pred cchhhccc
Confidence 33333333
No 106
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=49.35 E-value=14 Score=30.94 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=7.8
Q ss_pred hhhhhhhhhhHHHHHHhh
Q 040238 507 GYAGGLVAGLVVGFNFST 524 (549)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~ 524 (549)
++++|++.+.+++.++++
T Consensus 10 ~~~ag~a~~~flgYciYF 27 (148)
T TIGR00985 10 VIAAGIAAAAFLGYAIYF 27 (148)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444444444
No 107
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=48.89 E-value=11 Score=37.80 Aligned_cols=23 Identities=35% Similarity=0.234 Sum_probs=14.9
Q ss_pred CceeeeehhhhhhhhhhHHHHHH
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNF 522 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~ 522 (549)
...++.|+|++.+||+.+|+++.
T Consensus 366 tgaIaGIsvavvvvVgglvGfLc 388 (397)
T PF03302_consen 366 TGAIAGISVAVVVVVGGLVGFLC 388 (397)
T ss_pred ccceeeeeehhHHHHHHHHHHHh
Confidence 44556666666666777766666
No 108
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.96 E-value=24 Score=27.76 Aligned_cols=10 Identities=50% Similarity=0.747 Sum_probs=4.2
Q ss_pred hhHHHHhhhh
Q 040238 537 QQKATRRRRR 546 (549)
Q Consensus 537 ~~~~~~r~~~ 546 (549)
..+++++||+
T Consensus 47 ~~~~~~~rr~ 56 (108)
T PF07219_consen 47 VRRWRRRRRR 56 (108)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 109
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=45.87 E-value=16 Score=35.96 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=8.3
Q ss_pred HHHHHhhhhhhHHH
Q 040238 528 GWILEKLGTQQKAT 541 (549)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (549)
.|++|++++|+.++
T Consensus 317 ~~~~~~~~~~~~~~ 330 (361)
T PF12259_consen 317 AWLYRTFRRRQLRS 330 (361)
T ss_pred HhheeehHHHHhhh
Confidence 37777766655444
No 110
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=44.22 E-value=73 Score=20.46 Aligned_cols=25 Identities=4% Similarity=-0.186 Sum_probs=16.1
Q ss_pred hhhHHHHHHhhhHHHHHHHhhhhhh
Q 040238 514 AGLVVGFNFSTGIIGWILEKLGTQQ 538 (549)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (549)
|.+++++..++.+...|++.+++-+
T Consensus 9 vli~lv~~gy~~hmkrycrafrqdr 33 (54)
T PF13260_consen 9 VLIVLVVVGYFCHMKRYCRAFRQDR 33 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4444455555667778888887744
No 111
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=43.99 E-value=18 Score=24.52 Aligned_cols=15 Identities=53% Similarity=0.895 Sum_probs=7.6
Q ss_pred HHHhhhhhhHHHHhh
Q 040238 530 ILEKLGTQQKATRRR 544 (549)
Q Consensus 530 ~~~~~~~~~~~~~r~ 544 (549)
|.+..+++|-++|||
T Consensus 14 FL~RvGr~q~~~r~R 28 (60)
T PF06072_consen 14 FLRRVGRQQHASRRR 28 (60)
T ss_pred HHHHHhHHHHHHHHH
Confidence 455666666333333
No 112
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=43.98 E-value=21 Score=25.03 Aligned_cols=13 Identities=46% Similarity=0.864 Sum_probs=5.6
Q ss_pred eehhhhhhhhhhH
Q 040238 505 LIGYAGGLVAGLV 517 (549)
Q Consensus 505 ~~~~~~~~~~~~~ 517 (549)
.||++++++++++
T Consensus 35 aIGvi~gi~~~~l 47 (68)
T PF04971_consen 35 AIGVIGGIFFGLL 47 (68)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444433
No 113
>PF15179 Myc_target_1: Myc target protein 1
Probab=42.26 E-value=14 Score=31.62 Aligned_cols=32 Identities=22% Similarity=0.618 Sum_probs=19.9
Q ss_pred CceeeeehhhhhhhhhhHHHHHHhhhHHHHHHH
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNFSTGIIGWILE 532 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (549)
.|.-+++++.+.+++|++++.++++. ..|+-|
T Consensus 17 ~~~~lIlaF~vSm~iGLviG~li~~L-ltwlSR 48 (197)
T PF15179_consen 17 DWEDLILAFCVSMAIGLVIGALIWAL-LTWLSR 48 (197)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 35566777777777777766665443 345443
No 114
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.13 E-value=21 Score=19.53 Aligned_cols=12 Identities=58% Similarity=0.822 Sum_probs=7.0
Q ss_pred CCCCEeeCCCCc
Q 040238 406 PNLESLDLSNNK 417 (549)
Q Consensus 406 ~~L~~L~l~~n~ 417 (549)
++|+.|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666653
No 115
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=39.96 E-value=9.5 Score=26.40 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=0.0
Q ss_pred ehhhhhhhhhhH
Q 040238 506 IGYAGGLVAGLV 517 (549)
Q Consensus 506 ~~~~~~~~~~~~ 517 (549)
+++++|.+++++
T Consensus 12 aavIaG~Vvgll 23 (64)
T PF01034_consen 12 AAVIAGGVVGLL 23 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334444333333
No 116
>PRK09459 pspG phage shock protein G; Reviewed
Probab=38.64 E-value=24 Score=25.28 Aligned_cols=11 Identities=9% Similarity=0.667 Sum_probs=5.1
Q ss_pred HHHHHHhhhhh
Q 040238 527 IGWILEKLGTQ 537 (549)
Q Consensus 527 ~~~~~~~~~~~ 537 (549)
..|++|...+.
T Consensus 57 ~vW~~r~~~~~ 67 (76)
T PRK09459 57 VVWVIRAIKAP 67 (76)
T ss_pred HHHHHHHhhcc
Confidence 44555544433
No 117
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=37.46 E-value=49 Score=25.43 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=7.2
Q ss_pred hhhhhHHHHhhhh
Q 040238 534 LGTQQKATRRRRR 546 (549)
Q Consensus 534 ~~~~~~~~~r~~~ 546 (549)
.+|+||+|++.++
T Consensus 26 i~RPQrKr~K~~~ 38 (97)
T COG1862 26 IIRPQRKRMKEHQ 38 (97)
T ss_pred hcCHHHHHHHHHH
Confidence 4555666655554
No 118
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=37.41 E-value=38 Score=29.80 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=12.3
Q ss_pred hhhHHHHHHhhhHHHHHHHhhhhhhH
Q 040238 514 AGLVVGFNFSTGIIGWILEKLGTQQK 539 (549)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (549)
|.++..+++.-+..+=.+-++++-++
T Consensus 141 fLICT~LfLSTVVLANKVS~LKrskQ 166 (227)
T PF05399_consen 141 FLICTLLFLSTVVLANKVSSLKRSKQ 166 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445555566666555
No 119
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=36.87 E-value=49 Score=32.40 Aligned_cols=7 Identities=0% Similarity=-0.382 Sum_probs=2.8
Q ss_pred hhhhHHH
Q 040238 535 GTQQKAT 541 (549)
Q Consensus 535 ~~~~~~~ 541 (549)
+.|.++|
T Consensus 73 ~~w~~~r 79 (400)
T COG3071 73 RGWFSRR 79 (400)
T ss_pred HHHHHHH
Confidence 3344433
No 120
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.14 E-value=12 Score=37.91 Aligned_cols=9 Identities=11% Similarity=0.538 Sum_probs=0.0
Q ss_pred HHHHhhhhh
Q 040238 529 WILEKLGTQ 537 (549)
Q Consensus 529 ~~~~~~~~~ 537 (549)
|.+.+.+++
T Consensus 373 ~vc~~~rrr 381 (439)
T PF02480_consen 373 WVCLRCRRR 381 (439)
T ss_dssp ---------
T ss_pred heeeeehhc
Confidence 444333333
No 121
>PRK00523 hypothetical protein; Provisional
Probab=34.81 E-value=41 Score=24.01 Aligned_cols=15 Identities=0% Similarity=-0.396 Sum_probs=8.2
Q ss_pred HHhhhHHHHHHHhhh
Q 040238 521 NFSTGIIGWILEKLG 535 (549)
Q Consensus 521 ~~~~~~~~~~~~~~~ 535 (549)
..|+.-++|+.++++
T Consensus 21 ~Gffiark~~~k~l~ 35 (72)
T PRK00523 21 IGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445566666655
No 122
>PRK01844 hypothetical protein; Provisional
Probab=33.61 E-value=46 Score=23.75 Aligned_cols=15 Identities=7% Similarity=-0.168 Sum_probs=8.3
Q ss_pred HhhhHHHHHHHhhhh
Q 040238 522 FSTGIIGWILEKLGT 536 (549)
Q Consensus 522 ~~~~~~~~~~~~~~~ 536 (549)
.|+.-++|+.++++.
T Consensus 21 Gff~ark~~~k~lk~ 35 (72)
T PRK01844 21 GFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455666666554
No 123
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=33.45 E-value=65 Score=26.26 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=20.2
Q ss_pred HHHHHhhhHHHHHHHhhhhhhHHHHhhhhh
Q 040238 518 VGFNFSTGIIGWILEKLGTQQKATRRRRRR 547 (549)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 547 (549)
+..++......|...+..++++++.+|+++
T Consensus 98 iST~lv~~vtg~~~~~l~~~~~~~~~~~~~ 127 (128)
T COG1380 98 ISTLLVLLVTGWVVQLLIRWQSKRHGRKKE 127 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 334444466778888888888777777654
No 124
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=33.27 E-value=7 Score=32.46 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=18.3
Q ss_pred CceeeeehhhhhhhhhhHHHHHHhh
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNFST 524 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (549)
....+++|+++++++++++++++++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFC 74 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEE
Confidence 5778888988888877776665443
No 125
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=32.90 E-value=14 Score=29.66 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=0.0
Q ss_pred hhhHHHHHHhh
Q 040238 514 AGLVVGFNFST 524 (549)
Q Consensus 514 ~~~~~~~~~~~ 524 (549)
++.+++.++++
T Consensus 7 ~~~~lgYciYF 17 (121)
T PF02064_consen 7 AAAFLGYCIYF 17 (121)
T ss_dssp -----------
T ss_pred HHHHHHHHhhc
Confidence 33344444444
No 126
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=32.45 E-value=47 Score=29.48 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=11.2
Q ss_pred CceeeeehhhhhhhhhhHHHHHHh
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNFS 523 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~ 523 (549)
...+.+++-++++++++++++++.
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHH
Confidence 344444444444444445555553
No 127
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=31.80 E-value=67 Score=25.27 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=12.2
Q ss_pred hHHHHHHHhhhhhhHHHHhh
Q 040238 525 GIIGWILEKLGTQQKATRRR 544 (549)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~r~ 544 (549)
...+||..+.+++..++++|
T Consensus 87 ~~~W~~~l~lg~~i~~~~~~ 106 (107)
T PF14017_consen 87 AAVWWYALYLGRRIDRRMAR 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34456666667766666554
No 128
>PF15179 Myc_target_1: Myc target protein 1
Probab=31.37 E-value=19 Score=30.77 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=17.5
Q ss_pred eehhhhhhhhhhHHHHHHhhhHHHHHHHhhhhhhHHHHhh
Q 040238 505 LIGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKATRRR 544 (549)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 544 (549)
-+++++|+++|.+|-+++.+.-++-.-..+-+|...++|+
T Consensus 26 ~vSm~iGLviG~li~~LltwlSRRRASa~Isr~s~~~~~~ 65 (197)
T PF15179_consen 26 CVSMAIGLVIGALIWALLTWLSRRRASARISRWSSSRSRR 65 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccCcccccc
Confidence 3444555555554444444422222333444444444444
No 129
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=28.84 E-value=72 Score=16.87 Aligned_cols=8 Identities=13% Similarity=0.634 Sum_probs=3.3
Q ss_pred HHHHhhhh
Q 040238 529 WILEKLGT 536 (549)
Q Consensus 529 ~~~~~~~~ 536 (549)
|.....++
T Consensus 5 wrkkrmrr 12 (26)
T KOG4752|consen 5 WRKKRMRR 12 (26)
T ss_pred HHHHHHHH
Confidence 44444333
No 130
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=28.11 E-value=62 Score=31.80 Aligned_cols=12 Identities=8% Similarity=-0.119 Sum_probs=4.7
Q ss_pred HHHHhhhHHHHH
Q 040238 519 GFNFSTGIIGWI 530 (549)
Q Consensus 519 ~~~~~~~~~~~~ 530 (549)
.+.+++|..+|.
T Consensus 54 av~llwwlv~~i 65 (531)
T COG3898 54 AVLLLWWLVRSI 65 (531)
T ss_pred HHHHHHHHHHHH
Confidence 333333444443
No 131
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.57 E-value=83 Score=22.02 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=4.6
Q ss_pred HHHHHHHhhh
Q 040238 526 IIGWILEKLG 535 (549)
Q Consensus 526 ~~~~~~~~~~ 535 (549)
-++|+.++++
T Consensus 18 ar~~~~k~l~ 27 (64)
T PF03672_consen 18 ARKYMEKQLK 27 (64)
T ss_pred HHHHHHHHHH
Confidence 4444544443
No 132
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=27.01 E-value=87 Score=23.38 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=2.6
Q ss_pred hhHHHHh
Q 040238 537 QQKATRR 543 (549)
Q Consensus 537 ~~~~~~r 543 (549)
.||++++
T Consensus 23 pqkK~~k 29 (84)
T TIGR00739 23 PQRKRRK 29 (84)
T ss_pred hHHHHHH
Confidence 3333333
No 133
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.87 E-value=89 Score=21.59 Aligned_cols=9 Identities=44% Similarity=0.608 Sum_probs=3.3
Q ss_pred eeeeehhhh
Q 040238 502 KIILIGYAG 510 (549)
Q Consensus 502 ~~~~~~~~~ 510 (549)
.++++.++.
T Consensus 14 lIVLlvV~g 22 (69)
T PF04689_consen 14 LIVLLVVAG 22 (69)
T ss_pred eEEeehHHH
Confidence 333333333
No 134
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=26.69 E-value=82 Score=29.51 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=5.6
Q ss_pred eeehhhhhhhhh
Q 040238 504 ILIGYAGGLVAG 515 (549)
Q Consensus 504 ~~~~~~~~~~~~ 515 (549)
+++++++|++++
T Consensus 215 iv~g~~~G~~~L 226 (278)
T PF06697_consen 215 IVVGVVGGVVLL 226 (278)
T ss_pred EEEEehHHHHHH
Confidence 344545554443
No 135
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=26.40 E-value=52 Score=24.04 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=9.1
Q ss_pred hhhhhhhhhHHHHHHhhhHHHHH
Q 040238 508 YAGGLVAGLVVGFNFSTGIIGWI 530 (549)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~ 530 (549)
++.++|+.+++++.+++....|+
T Consensus 10 ~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 10 IGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444343333333344
No 136
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=26.14 E-value=72 Score=24.06 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=11.2
Q ss_pred CceeeeehhhhhhhhhhHHHHHHhhh
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNFSTG 525 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (549)
.|.+++.| +|+++.++++.++++.
T Consensus 41 yWpyLA~G--GG~iLilIii~Lv~CC 64 (98)
T PF07204_consen 41 YWPYLAAG--GGLILILIIIALVCCC 64 (98)
T ss_pred hhHHhhcc--chhhhHHHHHHHHHHh
Confidence 46665544 4444444443333333
No 137
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.40 E-value=45 Score=41.47 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=22.1
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccc
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ 395 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 395 (549)
||++|+|+.+.++.|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35666666666667777777777777777654
No 138
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=24.68 E-value=42 Score=33.13 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=15.7
Q ss_pred CceeeeehhhhhhhhhhHHHHHHhhh
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNFSTG 525 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (549)
...+.+.|++++++|++|++.+++++
T Consensus 62 NHGlhaagFfvaflvslVL~~l~~f~ 87 (429)
T PF12297_consen 62 NHGLHAAGFFVAFLVSLVLTWLCFFL 87 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677776666666655443
No 139
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=24.51 E-value=60 Score=26.71 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=5.2
Q ss_pred eeehhhhhhhhhh
Q 040238 504 ILIGYAGGLVAGL 516 (549)
Q Consensus 504 ~~~~~~~~~~~~~ 516 (549)
++.|+++|+|+++
T Consensus 62 AIaGIVfgiVfim 74 (155)
T PF10873_consen 62 AIAGIVFGIVFIM 74 (155)
T ss_pred eeeeeehhhHHHH
Confidence 3334444444333
No 140
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.49 E-value=1.3e+02 Score=25.91 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=15.8
Q ss_pred hhhhhhhhhHHHHHHhhhHHHHHHHhhhhhhHHHHhh
Q 040238 508 YAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKATRRR 544 (549)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 544 (549)
+.-+.+++.++..++.+....-+.++.-.+.+.|||+
T Consensus 138 ~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~~rR~~ 174 (184)
T COG3216 138 VLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFRERRRR 174 (184)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444333333333333333333
No 141
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=23.79 E-value=46 Score=24.45 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=9.4
Q ss_pred CceeeeehhhhhhhhhhHH
Q 040238 500 DWKIILIGYAGGLVAGLVV 518 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~ 518 (549)
.|.+|+++-+.+++++.+.
T Consensus 15 ~~yyiiA~gga~llL~~v~ 33 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVC 33 (87)
T ss_pred eeeHHHhhccHHHHHHHHH
Confidence 4555555544444444444
No 142
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.62 E-value=84 Score=31.72 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=4.4
Q ss_pred hhhhHHHHhhh
Q 040238 535 GTQQKATRRRR 545 (549)
Q Consensus 535 ~~~~~~~~r~~ 545 (549)
....+++++||
T Consensus 70 ~~~~~~~~~r~ 80 (409)
T TIGR00540 70 AHSRGWFSGRK 80 (409)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 143
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=23.19 E-value=1.5e+02 Score=22.09 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=6.4
Q ss_pred eeehhhhhhhhhhH
Q 040238 504 ILIGYAGGLVAGLV 517 (549)
Q Consensus 504 ~~~~~~~~~~~~~~ 517 (549)
+-|+++++.+++++
T Consensus 65 veigl~VgTlFgLi 78 (100)
T PF10954_consen 65 VEIGLGVGTLFGLI 78 (100)
T ss_pred eEEeehhHHHHHHH
Confidence 33444555444443
No 144
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=22.81 E-value=1.4e+02 Score=25.24 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=18.8
Q ss_pred hhhhhhhhhHHHHHHhhhHHHHHHHhhhhhhHHHHh
Q 040238 508 YAGGLVAGLVVGFNFSTGIIGWILEKLGTQQKATRR 543 (549)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 543 (549)
+.++++++++..+ ..|+...|..+.+++++.++-.
T Consensus 110 ~~Gg~l~Gli~~~-~~Y~ls~~lI~~Yr~~~~~~~~ 144 (154)
T TIGR03546 110 VMGSFVVGLILLP-PAFAISKVIIAKYRKRIVAWVN 144 (154)
T ss_pred HHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444 4445556666666666555533
No 145
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.74 E-value=23 Score=28.40 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=8.7
Q ss_pred Cceeeeehhhhhhhhhh
Q 040238 500 DWKIILIGYAGGLVAGL 516 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~ 516 (549)
.|.++++|+++|+++|.
T Consensus 7 ~W~~a~igLvvGi~IG~ 23 (138)
T COG3105 7 TWEYALIGLVVGIIIGA 23 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555544444
No 146
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=22.57 E-value=2.2e+02 Score=19.83 Aligned_cols=12 Identities=17% Similarity=-0.105 Sum_probs=4.7
Q ss_pred hHHHHHHHhhhh
Q 040238 525 GIIGWILEKLGT 536 (549)
Q Consensus 525 ~~~~~~~~~~~~ 536 (549)
..++-+.+-..+
T Consensus 39 ~qrr~iL~~v~r 50 (67)
T COG3114 39 LQRRAILRGVAR 50 (67)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 147
>PRK11677 hypothetical protein; Provisional
Probab=22.17 E-value=26 Score=28.78 Aligned_cols=17 Identities=41% Similarity=0.898 Sum_probs=7.4
Q ss_pred ceeeeehhhhhhhhhhH
Q 040238 501 WKIILIGYAGGLVAGLV 517 (549)
Q Consensus 501 ~~~~~~~~~~~~~~~~~ 517 (549)
|.++++++++|+++|++
T Consensus 3 W~~a~i~livG~iiG~~ 19 (134)
T PRK11677 3 WEYALIGLVVGIIIGAV 19 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 148
>PTZ00046 rifin; Provisional
Probab=22.12 E-value=95 Score=30.27 Aligned_cols=8 Identities=0% Similarity=0.351 Sum_probs=3.1
Q ss_pred HHHHhhhh
Q 040238 529 WILEKLGT 536 (549)
Q Consensus 529 ~~~~~~~~ 536 (549)
|+.-+|||
T Consensus 335 YLILRYRR 342 (358)
T PTZ00046 335 YLILRYRR 342 (358)
T ss_pred HHHHHhhh
Confidence 44433333
No 149
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=22.10 E-value=99 Score=25.04 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=13.9
Q ss_pred hhhhHHHHHHhhhHHHHHHHhhhh
Q 040238 513 VAGLVVGFNFSTGIIGWILEKLGT 536 (549)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~ 536 (549)
+++++++.++++++.+|....-..
T Consensus 10 ~~~~i~~t~lf~~R~r~~~~~~~~ 33 (128)
T PF09435_consen 10 FFVLIIGTLLFFTRHRWLPLLPRY 33 (128)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhh
Confidence 344455556666777787754443
No 150
>PF07950 DUF1691: Protein of unknown function (DUF1691); InterPro: IPR012472 This family of fungal proteins is uncharacterised. Each protein contains two copies of this region.
Probab=22.00 E-value=1.5e+02 Score=23.37 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=5.7
Q ss_pred HHHhhhhhhHHHHhh
Q 040238 530 ILEKLGTQQKATRRR 544 (549)
Q Consensus 530 ~~~~~~~~~~~~~r~ 544 (549)
..+..++++++|||+
T Consensus 61 a~~~~~~~~~~rr~~ 75 (110)
T PF07950_consen 61 ALRLGRRSRRRRRRG 75 (110)
T ss_pred HHHHHHHHHhhhhhh
Confidence 333333333333333
No 151
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.81 E-value=99 Score=22.50 Aligned_cols=13 Identities=8% Similarity=0.233 Sum_probs=7.3
Q ss_pred HHHHHHHhhhhhh
Q 040238 526 IIGWILEKLGTQQ 538 (549)
Q Consensus 526 ~~~~~~~~~~~~~ 538 (549)
.-.|.+-+|+.+.
T Consensus 18 ap~WL~lHY~sk~ 30 (75)
T PF06667_consen 18 APIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHhc
Confidence 3456666665543
No 152
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=21.62 E-value=99 Score=30.03 Aligned_cols=8 Identities=0% Similarity=0.351 Sum_probs=3.1
Q ss_pred HHHHhhhh
Q 040238 529 WILEKLGT 536 (549)
Q Consensus 529 ~~~~~~~~ 536 (549)
|+.-+|||
T Consensus 330 YLILRYRR 337 (353)
T TIGR01477 330 YLILRYRR 337 (353)
T ss_pred HHHHHhhh
Confidence 44433333
No 153
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=21.49 E-value=1.5e+02 Score=26.59 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=15.2
Q ss_pred hhhhhhhHHHHHHhhhHHHHHHHhhhh
Q 040238 510 GGLVAGLVVGFNFSTGIIGWILEKLGT 536 (549)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (549)
+-++++++++++++|+..+|+.++.+.
T Consensus 69 ~qmi~aL~~VI~Liy~l~rwL~rR~~~ 95 (219)
T PRK13415 69 VKLIGATLFVIFLIYALVKWLNKRNRL 95 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444455555555656688876543
No 154
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=21.00 E-value=98 Score=31.09 Aligned_cols=7 Identities=0% Similarity=-0.396 Sum_probs=2.7
Q ss_pred hhHHHHh
Q 040238 537 QQKATRR 543 (549)
Q Consensus 537 ~~~~~~r 543 (549)
.++++++
T Consensus 72 ~~~~~~~ 78 (398)
T PRK10747 72 TRGWFVG 78 (398)
T ss_pred hhHHHHH
Confidence 3344333
No 155
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=20.80 E-value=1.1e+02 Score=22.29 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=8.6
Q ss_pred ehhhhhhhhhhHHHHHHhh
Q 040238 506 IGYAGGLVAGLVVGFNFST 524 (549)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~ 524 (549)
.++.+|++++=+++.++++
T Consensus 33 ~g~LaGiV~~D~vlTLLIv 51 (79)
T PF07213_consen 33 PGLLAGIVAADAVLTLLIV 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555544444444433
No 156
>KOG3607 consensus Meltrins, fertilins and related Zn-dependent metalloproteinases of the ADAMs family [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=1.5e+02 Score=32.23 Aligned_cols=19 Identities=37% Similarity=0.770 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 040238 464 SGLCGRPLSKGCESDVAPA 482 (549)
Q Consensus 464 ~~lc~~~~~~~c~~~~~~~ 482 (549)
.+.|++...|-|...|++.
T Consensus 635 ~GVCnn~~~ChC~~gwapp 653 (716)
T KOG3607|consen 635 HGVCNNELNCHCEPGWAPP 653 (716)
T ss_pred CcccCCCcceeeCCCCCCC
Confidence 4567777888888888763
No 157
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.31 E-value=96 Score=22.46 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=9.9
Q ss_pred hhHHHHHHHhhhhhhHH
Q 040238 524 TGIIGWILEKLGTQQKA 540 (549)
Q Consensus 524 ~~~~~~~~~~~~~~~~~ 540 (549)
+..-.|.+-+|+.++|.
T Consensus 16 fVaPiWL~LHY~sk~~~ 32 (75)
T PRK09458 16 FVAPIWLWLHYRSKRQG 32 (75)
T ss_pred HHHHHHHHHhhcccccC
Confidence 34456777777665443
No 158
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=20.25 E-value=1.2e+02 Score=22.66 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=16.7
Q ss_pred CceeeeehhhhhhhhhhHHHHHHhhhHHHHHHHhhhhhhH
Q 040238 500 DWKIILIGYAGGLVAGLVVGFNFSTGIIGWILEKLGTQQK 539 (549)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (549)
.|.-++.++++.+ |++.++.+++.+..+-..-.++.+++
T Consensus 33 ~ws~vv~v~i~~l-vaVg~~YL~y~~fLkDlIlv~KAkrq 71 (91)
T PF01708_consen 33 PWSRVVEVAIFTL-VAVGCLYLAYTWFLKDLILVLKAKRQ 71 (91)
T ss_pred cceeEeeeeehHH-HHHHHHHHHHHHHHHHHhheeeeccC
Confidence 3444444433333 34444455544444444444444333
No 159
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.19 E-value=1.1e+02 Score=22.19 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=7.7
Q ss_pred HHHHHHHhhhhhhH
Q 040238 526 IIGWILEKLGTQQK 539 (549)
Q Consensus 526 ~~~~~~~~~~~~~~ 539 (549)
.-.|.+.+|+.+.+
T Consensus 18 ap~wl~lHY~~k~~ 31 (75)
T TIGR02976 18 APLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHhhhc
Confidence 34576666654433
Done!