Query 040238
Match_columns 549
No_of_seqs 362 out of 4225
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.9E-58 1.3E-62 499.4 36.2 467 1-480 202-753 (768)
2 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-52 1.2E-56 457.3 32.2 447 1-471 26-565 (844)
3 3rgz_A Protein brassinosteroid 100.0 1.9E-51 6.5E-56 446.9 32.4 442 2-464 181-715 (768)
4 3t6q_A CD180 antigen; protein- 100.0 5E-50 1.7E-54 426.3 37.5 455 1-470 35-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 9.5E-48 3.2E-52 414.2 37.8 462 1-471 27-627 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.9E-48 1E-52 412.6 33.2 441 1-471 34-563 (606)
7 3t6q_A CD180 antigen; protein- 100.0 8.6E-48 3E-52 409.0 34.9 433 1-448 59-565 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 3.1E-47 1.1E-51 402.0 32.2 436 1-471 30-536 (570)
9 3vq2_A TLR4, TOLL-like recepto 100.0 9.6E-46 3.3E-50 393.3 34.6 416 1-449 58-564 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 5.9E-45 2E-49 392.4 41.1 425 2-443 7-517 (680)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-45 6E-50 404.1 37.3 449 3-478 8-566 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 4.8E-45 1.6E-49 383.4 25.9 414 1-447 28-514 (549)
13 4eco_A Uncharacterized protein 100.0 6E-45 2.1E-49 386.9 25.4 423 2-446 84-603 (636)
14 2z7x_B TOLL-like receptor 1, v 100.0 4E-44 1.4E-48 373.6 29.6 419 2-447 3-485 (520)
15 2z63_A TOLL-like receptor 4, v 100.0 4.7E-44 1.6E-48 377.7 29.2 420 1-452 54-540 (570)
16 4ecn_A Leucine-rich repeat pro 100.0 7.5E-44 2.6E-48 384.5 26.3 419 2-447 326-844 (876)
17 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-42 1.1E-46 368.6 35.6 423 1-447 54-584 (635)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-42 5.2E-47 364.6 28.7 409 2-448 34-515 (562)
19 4eco_A Uncharacterized protein 100.0 7.4E-43 2.5E-47 370.9 23.2 419 23-468 81-602 (636)
20 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-42 4E-47 365.2 20.6 441 3-470 9-514 (549)
21 3v47_A TOLL-like receptor 5B a 100.0 4.2E-40 1.4E-44 337.5 35.4 396 2-451 13-416 (455)
22 4ecn_A Leucine-rich repeat pro 100.0 1.1E-40 3.7E-45 359.9 26.9 418 23-466 323-840 (876)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-40 4.3E-45 347.1 23.6 416 26-470 3-485 (520)
24 4g8a_A TOLL-like receptor 4; l 100.0 4.2E-39 1.4E-43 344.4 35.4 450 4-471 36-585 (635)
25 1jl5_A Outer protein YOPM; leu 100.0 7.7E-39 2.6E-43 325.4 26.9 371 1-447 13-415 (454)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.7E-38 1.6E-42 330.5 28.6 423 21-471 29-515 (562)
27 3v47_A TOLL-like receptor 5B a 100.0 7.9E-38 2.7E-42 320.5 28.1 382 25-470 12-412 (455)
28 1o6v_A Internalin A; bacterial 100.0 4E-36 1.4E-40 308.2 34.3 347 21-445 44-390 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 5.5E-37 1.9E-41 311.8 26.0 368 1-447 36-433 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 7.2E-36 2.5E-40 303.8 29.4 353 12-449 31-393 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 3.7E-36 1.3E-40 309.8 23.7 347 76-471 14-361 (477)
32 2id5_A Lingo-1, leucine rich r 100.0 5.1E-35 1.8E-39 301.3 26.7 320 2-420 14-334 (477)
33 3o6n_A APL1; leucine-rich repe 100.0 1.3E-34 4.5E-39 290.1 26.3 335 21-470 43-378 (390)
34 1o6v_A Internalin A; bacterial 100.0 1.1E-33 3.9E-38 289.9 33.6 345 1-424 48-392 (466)
35 3bz5_A Internalin-J, INLJ; leu 100.0 3.3E-33 1.1E-37 284.2 31.5 337 28-445 23-370 (457)
36 3oja_B Anopheles plasmodium-re 100.0 5.9E-34 2E-38 300.8 25.7 335 21-470 49-384 (597)
37 3o6n_A APL1; leucine-rich repe 100.0 1.2E-33 4.2E-38 283.1 24.8 308 1-344 47-355 (390)
38 4fmz_A Internalin; leucine ric 100.0 3.3E-32 1.1E-36 268.4 29.3 307 43-443 40-346 (347)
39 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-33 4.2E-38 273.6 18.7 259 195-475 50-312 (313)
40 4fmz_A Internalin; leucine ric 100.0 1.1E-31 3.9E-36 264.5 32.8 308 18-419 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 5.8E-33 2E-37 293.2 24.6 309 1-345 53-362 (597)
42 1xku_A Decorin; proteoglycan, 100.0 2.1E-30 7.1E-35 253.5 30.7 288 1-338 33-329 (330)
43 1xku_A Decorin; proteoglycan, 100.0 5.6E-30 1.9E-34 250.4 30.1 289 73-441 31-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 3.5E-30 1.2E-34 252.0 28.2 290 24-339 34-331 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 8.9E-35 3E-39 298.4 -7.2 366 1-419 5-411 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 8E-30 2.8E-34 249.4 27.9 289 1-313 35-331 (332)
47 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-31 1.1E-35 256.7 15.9 250 176-447 52-308 (313)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-33 3.7E-38 290.4 -4.4 370 1-423 30-444 (461)
49 2z66_A Variable lymphocyte rec 100.0 1.8E-28 6E-33 237.1 21.0 252 178-448 11-266 (306)
50 3zyi_A Leucine-rich repeat-con 100.0 1.2E-27 4E-32 244.3 25.8 252 176-448 56-308 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 2.1E-27 7.3E-32 241.4 25.2 250 177-447 46-296 (440)
52 2z80_A TOLL-like receptor 2, v 100.0 2.4E-28 8.4E-33 241.0 17.6 283 96-448 29-319 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 4.7E-28 1.6E-32 239.0 15.9 282 22-345 30-318 (353)
54 3ogk_B Coronatine-insensitive 100.0 2.3E-30 7.9E-35 274.2 -1.7 404 15-445 65-528 (592)
55 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-27 4.1E-32 228.8 16.9 229 177-448 14-243 (285)
56 3zyi_A Leucine-rich repeat-con 100.0 7.5E-27 2.6E-31 238.3 23.2 253 196-471 55-308 (452)
57 2z66_A Variable lymphocyte rec 99.9 3.4E-27 1.2E-31 228.1 19.0 279 101-448 10-292 (306)
58 3zyj_A Leucine-rich repeat-con 99.9 1E-26 3.5E-31 236.4 22.9 253 196-471 44-297 (440)
59 1wwl_A Monocyte differentiatio 99.9 3.2E-28 1.1E-32 235.6 6.7 227 197-444 65-310 (312)
60 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.2E-31 225.7 17.5 211 210-443 95-314 (328)
61 4fcg_A Uncharacterized protein 99.9 4.7E-26 1.6E-30 221.6 21.4 59 361-419 256-314 (328)
62 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-25 1.2E-29 231.5 29.3 259 2-345 43-301 (622)
63 3o53_A Protein LRIM1, AGAP0063 99.9 7.7E-28 2.6E-32 233.5 5.8 257 2-310 13-270 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.9 7E-25 2.4E-29 229.4 28.5 261 74-447 41-301 (622)
65 1ozn_A Reticulon 4 receptor; N 99.9 6.2E-26 2.1E-30 216.8 17.6 253 101-449 14-267 (285)
66 3ogk_B Coronatine-insensitive 99.9 1.5E-28 5E-33 260.4 -0.8 422 1-441 75-549 (592)
67 3o53_A Protein LRIM1, AGAP0063 99.9 5.6E-26 1.9E-30 220.4 12.3 219 194-444 33-251 (317)
68 2o6q_A Variable lymphocyte rec 99.9 4.8E-24 1.7E-28 201.8 22.9 207 220-448 17-223 (270)
69 3oja_A Leucine-rich immune mol 99.9 7.3E-26 2.5E-30 232.2 10.6 234 122-438 35-270 (487)
70 2z62_A TOLL-like receptor 4, v 99.9 2.4E-24 8.4E-29 204.7 20.2 211 220-450 29-244 (276)
71 1wwl_A Monocyte differentiatio 99.9 6.7E-26 2.3E-30 219.3 8.7 246 195-465 43-308 (312)
72 3oja_A Leucine-rich immune mol 99.9 1.5E-25 5E-30 229.9 11.1 220 194-445 33-252 (487)
73 2p1m_B Transport inhibitor res 99.9 1.9E-28 6.4E-33 259.7 -11.2 403 17-443 60-519 (594)
74 2p1m_B Transport inhibitor res 99.9 7.9E-28 2.7E-32 254.9 -9.1 417 1-443 68-544 (594)
75 1p9a_G Platelet glycoprotein I 99.9 2.3E-23 7.9E-28 198.8 19.7 207 215-447 6-212 (290)
76 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.8E-27 192.4 21.7 205 245-470 17-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 6.9E-23 2.4E-27 195.4 19.7 204 243-470 9-212 (290)
78 2z62_A TOLL-like receptor 4, v 99.9 4.8E-23 1.6E-27 195.7 18.6 225 223-470 11-241 (276)
79 4glp_A Monocyte differentiatio 99.9 3.2E-23 1.1E-27 200.3 14.8 212 217-444 89-308 (310)
80 3rfs_A Internalin B, repeat mo 99.9 6.5E-23 2.2E-27 194.1 16.0 204 215-448 37-240 (272)
81 3m19_A Variable lymphocyte rec 99.9 1.9E-22 6.4E-27 188.6 16.9 212 220-478 15-232 (251)
82 3goz_A Leucine-rich repeat-con 99.9 6.8E-24 2.3E-28 209.7 5.9 84 3-88 2-95 (362)
83 3rfs_A Internalin B, repeat mo 99.9 6.9E-22 2.3E-26 187.1 18.8 205 220-449 20-224 (272)
84 4glp_A Monocyte differentiatio 99.9 3.9E-22 1.3E-26 192.7 13.9 226 2-233 67-308 (310)
85 2xwt_C Thyrotropin receptor; s 99.9 6.7E-22 2.3E-26 183.5 12.8 162 275-444 52-219 (239)
86 3goz_A Leucine-rich repeat-con 99.9 5.4E-23 1.8E-27 203.3 4.9 242 196-445 23-299 (362)
87 2xwt_C Thyrotropin receptor; s 99.9 3.6E-21 1.2E-25 178.6 16.0 196 196-440 32-236 (239)
88 1h6u_A Internalin H; cell adhe 99.9 5.2E-21 1.8E-25 184.3 17.5 196 215-445 37-232 (308)
89 3m19_A Variable lymphocyte rec 99.9 1.3E-20 4.3E-25 176.2 19.0 181 195-421 14-194 (251)
90 2ca6_A RAN GTPase-activating p 99.9 3.6E-23 1.2E-27 206.6 -0.5 241 196-447 33-320 (386)
91 2ca6_A RAN GTPase-activating p 99.8 5.7E-23 1.9E-27 205.2 0.1 138 278-423 159-320 (386)
92 1h6u_A Internalin H; cell adhe 99.8 6.6E-20 2.3E-24 176.6 19.2 205 7-258 27-231 (308)
93 2ast_B S-phase kinase-associat 99.8 2E-22 7E-27 197.3 1.4 84 361-448 225-311 (336)
94 2ast_B S-phase kinase-associat 99.8 1.4E-21 4.6E-26 191.5 5.1 252 2-300 50-315 (336)
95 4ay9_X Follicle-stimulating ho 99.8 1.6E-19 5.3E-24 177.4 18.4 240 178-440 13-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 3E-19 1E-23 175.4 19.7 82 3-88 13-95 (350)
97 3cvr_A Invasion plasmid antige 99.8 2.1E-19 7E-24 185.7 16.1 181 220-447 60-247 (571)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 7.4E-20 2.5E-24 167.0 11.3 138 279-448 33-171 (220)
99 2v9t_B SLIT homolog 2 protein 99.8 1.1E-19 3.7E-24 165.8 11.7 138 278-447 32-169 (220)
100 2o6s_A Variable lymphocyte rec 99.8 4.8E-19 1.7E-23 160.4 15.6 151 2-160 10-161 (208)
101 2o6s_A Variable lymphocyte rec 99.8 7.3E-19 2.5E-23 159.2 16.4 117 275-430 73-189 (208)
102 2xot_A Amphoterin-induced prot 99.8 3.2E-19 1.1E-23 175.9 12.7 180 222-447 21-206 (361)
103 3e6j_A Variable lymphocyte rec 99.8 1.6E-18 5.5E-23 159.2 16.0 138 278-448 40-177 (229)
104 3cvr_A Invasion plasmid antige 99.8 3.2E-18 1.1E-22 176.8 18.5 184 24-239 60-250 (571)
105 1h6t_A Internalin B; cell adhe 99.8 3E-18 1E-22 163.5 16.3 150 275-444 65-214 (291)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 3.4E-18 1.2E-22 155.9 13.6 136 331-471 35-171 (220)
107 3e6j_A Variable lymphocyte rec 99.8 1.4E-17 4.7E-22 153.0 17.1 154 2-163 22-175 (229)
108 2v9t_B SLIT homolog 2 protein 99.8 9.6E-18 3.3E-22 152.9 15.7 153 222-420 14-166 (220)
109 2xot_A Amphoterin-induced prot 99.7 6E-18 2.1E-22 166.8 13.4 178 197-395 20-202 (361)
110 1h6t_A Internalin B; cell adhe 99.7 1.9E-17 6.6E-22 157.8 16.1 171 20-209 43-214 (291)
111 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.8E-22 174.0 16.2 171 216-419 40-210 (605)
112 1m9s_A Internalin B; cell inva 99.7 2E-17 6.9E-22 172.8 16.9 191 220-445 22-212 (605)
113 1w8a_A SLIT protein; signaling 99.7 2.8E-18 9.6E-23 152.9 8.8 156 281-470 11-166 (192)
114 4ezg_A Putative uncharacterize 99.7 3.8E-17 1.3E-21 146.4 11.3 150 245-444 45-195 (197)
115 4ezg_A Putative uncharacterize 99.7 6.5E-17 2.2E-21 144.9 12.6 153 20-188 41-195 (197)
116 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.9E-22 156.1 8.0 165 3-189 23-187 (263)
117 1xeu_A Internalin C; cellular 99.7 3.8E-17 1.3E-21 153.3 10.5 170 218-445 18-187 (263)
118 2wfh_A SLIT homolog 2 protein 99.7 1.1E-16 3.8E-21 142.5 9.9 112 329-447 32-143 (193)
119 1dce_A Protein (RAB geranylger 99.7 6.1E-19 2.1E-23 183.2 -6.6 84 361-447 466-550 (567)
120 4b8c_D Glucose-repressible alc 99.7 7.9E-17 2.7E-21 172.6 8.6 224 147-419 173-404 (727)
121 2ell_A Acidic leucine-rich nuc 99.7 1.5E-16 5.1E-21 138.6 8.5 136 21-164 22-164 (168)
122 1dce_A Protein (RAB geranylger 99.7 2.1E-18 7.2E-23 179.2 -4.1 134 20-160 346-499 (567)
123 1w8a_A SLIT protein; signaling 99.6 5.9E-16 2E-20 137.8 11.4 157 246-448 10-167 (192)
124 4b8c_D Glucose-repressible alc 99.6 8.2E-17 2.8E-21 172.5 5.9 126 23-161 173-307 (727)
125 3sb4_A Hypothetical leucine ri 99.6 4.5E-16 1.5E-20 151.4 8.8 222 194-437 100-328 (329)
126 2je0_A Acidic leucine-rich nuc 99.6 4.1E-16 1.4E-20 132.9 7.1 126 22-155 16-148 (149)
127 2o6r_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 130.9 12.7 134 280-448 9-142 (177)
128 3sb4_A Hypothetical leucine ri 99.6 2.7E-15 9.1E-20 145.9 12.4 87 359-447 227-314 (329)
129 2ell_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 129.9 11.8 135 277-445 23-162 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 126.5 8.5 129 277-439 16-149 (149)
131 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.9E-18 137.3 19.2 210 208-443 169-383 (401)
132 4fs7_A Uncharacterized protein 99.6 3.1E-13 1.1E-17 134.8 21.8 174 213-415 202-375 (394)
133 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.9E-19 127.6 8.3 136 17-161 13-154 (176)
134 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 8E-19 125.6 9.0 135 42-187 14-153 (176)
135 4fdw_A Leucine rich hypothetic 99.5 1.5E-12 5E-17 129.3 22.8 265 22-339 112-381 (401)
136 2wfh_A SLIT homolog 2 protein 99.5 2.4E-13 8.4E-18 120.8 15.1 110 220-343 32-141 (193)
137 3g39_A Variable lymphocyte rec 99.5 5.5E-14 1.9E-18 122.2 10.2 89 361-449 33-121 (170)
138 2o6r_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 118.0 15.1 114 219-345 28-141 (177)
139 4fs7_A Uncharacterized protein 99.5 2E-12 6.7E-17 128.9 22.1 199 212-440 178-376 (394)
140 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6.2E-18 119.4 10.3 88 361-448 36-123 (174)
141 1ds9_A Outer arm dynein; leuci 99.4 5.8E-16 2E-20 138.7 -7.7 141 3-153 22-180 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.2E-20 135.5 -5.4 156 245-443 19-185 (198)
143 2r9u_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 111.9 11.1 102 3-110 16-117 (174)
144 3g39_A Variable lymphocyte rec 99.4 4.6E-12 1.6E-16 110.0 12.3 83 2-89 12-94 (170)
145 4gt6_A Cell surface protein; l 99.3 3.9E-10 1.3E-14 112.2 24.6 332 38-442 54-390 (394)
146 4gt6_A Cell surface protein; l 99.3 1E-09 3.5E-14 109.2 25.5 335 11-419 51-391 (394)
147 3un9_A NLR family member X1; l 99.3 9.9E-14 3.4E-18 136.4 -5.2 133 2-134 75-224 (372)
148 2ifg_A High affinity nerve gro 99.3 1.3E-11 4.6E-16 120.7 9.8 86 361-447 34-120 (347)
149 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 132.7 -3.0 84 361-444 158-253 (372)
150 2ifg_A High affinity nerve gro 99.2 4.8E-11 1.6E-15 116.8 10.0 108 361-470 11-120 (347)
151 4h09_A Hypothetical leucine ri 99.1 9.1E-09 3.1E-13 101.8 23.2 83 18-108 41-123 (379)
152 4h09_A Hypothetical leucine ri 98.9 1.4E-07 4.9E-12 93.1 21.6 132 297-440 212-343 (379)
153 2ra8_A Uncharacterized protein 98.8 6.2E-09 2.1E-13 101.3 6.2 60 380-441 277-341 (362)
154 2ra8_A Uncharacterized protein 98.7 3.8E-09 1.3E-13 102.8 3.6 64 380-443 250-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 1.8E-08 6.2E-13 88.4 0.8 69 19-87 32-107 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 4.5E-08 1.5E-12 85.8 1.8 110 1-110 38-163 (185)
157 3rw6_A Nuclear RNA export fact 98.3 8.1E-08 2.8E-12 88.5 -0.2 67 379-447 167-237 (267)
158 3e4g_A ATP synthase subunit S, 98.2 4.3E-07 1.5E-11 77.5 2.2 91 16-109 54-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 1.3E-06 4.4E-11 80.5 5.4 100 4-105 148-258 (267)
160 3e4g_A ATP synthase subunit S, 98.0 1.1E-06 3.9E-11 74.8 1.0 81 361-441 64-150 (176)
161 3rfe_A Platelet glycoprotein I 97.6 0.00011 3.8E-09 59.6 6.4 60 386-447 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 6.4E-05 2.2E-09 65.3 2.3 63 69-131 66-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 7E-05 2.4E-09 65.1 2.5 117 17-133 35-169 (197)
164 3rfe_A Platelet glycoprotein I 96.9 0.0015 5.1E-08 52.8 6.0 57 361-419 11-68 (130)
165 2l2t_A Receptor tyrosine-prote 76.2 1.5 5.1E-05 27.0 2.0 9 504-512 12-20 (44)
166 2lz0_A Uncharacterized protein 72.9 8.4 0.00029 28.8 6.0 46 369-415 7-52 (100)
167 2lz0_A Uncharacterized protein 70.0 5.3 0.00018 29.9 4.3 47 9-56 6-52 (100)
168 2ks1_B Epidermal growth factor 69.3 2.2 7.5E-05 26.3 1.6 24 503-526 12-35 (44)
169 2k1k_A Ephrin type-A receptor 57.6 8.3 0.00028 22.9 2.5 8 510-517 14-21 (38)
170 2l8s_A Integrin alpha-1; trans 49.4 4.8 0.00016 25.9 0.6 6 529-534 31-36 (54)
171 2knc_B Integrin beta-3; transm 47.2 20 0.0007 25.3 3.7 16 507-522 12-27 (79)
172 2lx0_A Membrane fusion protein 42.1 33 0.0011 18.2 3.0 15 521-535 16-30 (32)
173 2knc_A Integrin alpha-IIB; tra 41.3 7.4 0.00025 25.1 0.6 6 529-534 34-39 (54)
174 2klu_A T-cell surface glycopro 32.7 24 0.00083 23.6 2.0 15 512-526 12-26 (70)
175 2rdd_B UPF0092 membrane protei 30.4 71 0.0024 18.6 3.6 11 536-546 22-32 (37)
176 3izc_q 60S ribosomal protein R 27.1 49 0.0017 17.0 2.1 17 529-545 5-21 (25)
177 3iz5_q 60S ribosomal protein L 26.9 48 0.0016 17.1 2.0 17 529-545 5-21 (25)
178 2k1a_A Integrin alpha-IIB; sin 25.8 16 0.00054 22.2 0.2 8 505-512 14-21 (42)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-58 Score=499.43 Aligned_cols=467 Identities=34% Similarity=0.526 Sum_probs=353.8
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|+|++|.+++.+|. +.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|. ..+++|++|++
T Consensus 202 L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~L 276 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKSLQYLSL 276 (768)
T ss_dssp CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----CCCTTCCEEEC
T ss_pred CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc----cccCCCCEEEC
Confidence 46666777766665555 66677777777777777666666677777777777777766654442 25666666666
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCcCCCCCCcc-cccccCCCCcEEEccCCc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNRIQGKVPKW-LLDPNMQNLNALNISHNF 158 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~ 158 (549)
++|.++..........+++|++|++++|.+ +.+|..+..+++|++|++++|.+++.+|.. +. .+++|++|++++|.
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~--~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL--KMRGLKVLDLSFNE 354 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT--TCTTCCEEECCSSE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh--cCCCCCEEeCcCCc
Confidence 666444211111111246777777777777 466677777777777777777776666654 55 67777777777777
Q ss_pred CCCCCCccccccCCCCCccEEEccCCcCCCCCCCC-----CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCC
Q 040238 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP-----PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 233 (549)
+.+..+.... ... ++|+.|++++|.+.+.+|.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 355 l~~~~p~~l~-~l~-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 355 FSGELPESLT-NLS-ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EEECCCTTHH-HHT-TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCccccHHHH-hhh-cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 6643333221 111 12777777777766555443 4567777777777777777777777777777777777777
Q ss_pred cCCcchhcCCCCCCeeecCCCccCCcCCCcccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
.+|..+..+. +|++|++++|.+++.+|..+.. .+.+|.++..+++|++|++++|++++..|.+++
T Consensus 433 ~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 433 TIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 7776666554 6777777777777776665543 235677789999999999999999999999999
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc------------------------
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM------------------------ 355 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l------------------------ 355 (549)
.+++|++|++++|.+.+..+..+ ..+++|+.|++++|++.|.+|...+......
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred cCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 99999999999999998877665 8899999999999999999997755421100
Q ss_pred ----------------------------------------cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccc
Q 040238 356 ----------------------------------------KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ 395 (549)
Q Consensus 356 ----------------------------------------~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 395 (549)
...+++.|++++|.+++.+|..|+.+++|+.|+|++|+++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 0124588999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCCCCCCC
Q 040238 396 GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGC 475 (549)
Q Consensus 396 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~c 475 (549)
+.+|+.|+.+++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|...++.++...++.|||++||.|+. .|
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C 748 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC 748 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CC
T ss_pred CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 78
Q ss_pred CCCCC
Q 040238 476 ESDVA 480 (549)
Q Consensus 476 ~~~~~ 480 (549)
....+
T Consensus 749 ~~~~~ 753 (768)
T 3rgz_A 749 DPSNA 753 (768)
T ss_dssp CSCC-
T ss_pred CCCcc
Confidence 75444
No 2
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-52 Score=457.32 Aligned_cols=447 Identities=20% Similarity=0.159 Sum_probs=328.5
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCc-cccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEe
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSG-QITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLA 79 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~ 79 (549)
|++|||++|.+++..+.+|.++++|++|+|++|...+ +.|+.|.++++|++|+|++|.+++..|.. |.++++|++|+
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~ 103 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA--FQGLFHLFELR 103 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS--SCSCSSCCCEE
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH--ccCCcccCEee
Confidence 6899999999999999999999999999999996554 44889999999999999999999777877 99999999999
Q ss_pred ccCCccceee-ccCCCcCCCCCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCCcccccccC--CCCcEEEc
Q 040238 80 LSLNRLSVLT-KATSNTTSQKLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNM--QNLNALNI 154 (549)
Q Consensus 80 Ls~n~i~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~L 154 (549)
+++|.++... .......+++|++|++++|.++.++ ..+.++++|++|++++|.+++..+..+. .+ ++|+.|++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~--~l~~~~L~~L~L 181 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE--PLQGKTLSFFSL 181 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH--HHHHCSSCCCEE
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc--cccCCccceEEC
Confidence 9999877532 2222337899999999999996653 5799999999999999999988888886 55 78888888
Q ss_pred cCCcCCCCCCccccc---cCCCCCccEEEccCCcCCCCCCCC--------------------------------------
Q 040238 155 SHNFLTGFDQHLVVL---PANKGDLLTFDLSSNNLQGPLPVP-------------------------------------- 193 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~-------------------------------------- 193 (549)
++|.+.+..+..+.. ......|+.|++++|.+.+..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 888877654432111 111223778888887655433211
Q ss_pred ---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCC
Q 040238 194 ---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270 (549)
Q Consensus 194 ---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l 270 (549)
.++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+. +|++|++++|.+++..+..
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~------- 333 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSN------- 333 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCS-------
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHH-------
Confidence 25677888888888777777778888888888888888766666655544 7888888888877655444
Q ss_pred CccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCC-----------------------------
Q 040238 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP----------------------------- 321 (549)
Q Consensus 271 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------------- 321 (549)
+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.++....
T Consensus 334 ---~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 334 ---FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp ---CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred ---hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 356777777777777777666666777777777777777665432100
Q ss_pred ---------CCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCc-----ccCchhhcCCCCCCEE
Q 040238 322 ---------RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD-----SVIPASIANLKGLQVL 387 (549)
Q Consensus 322 ---------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~-----~~~~~~~~~l~~L~~L 387 (549)
..+..+++|+.|++++|++.+..+...+..+++| +.|++++|.++ +..+..|.++++|++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-----~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-----EQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-----CBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-----ccccCCCCccccccccccchhhhcCcccccEE
Confidence 0011344555555555554433222222223333 66777777765 3344567788888888
Q ss_pred EccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCC
Q 040238 388 NLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLC 467 (549)
Q Consensus 388 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc 467 (549)
+|++|.+++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.. +..+..+.+.+||+.|
T Consensus 486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCC
T ss_pred ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccc
Confidence 8888888888888888888899999999888876666665 78888999999888887743 5567778889999999
Q ss_pred CCCC
Q 040238 468 GRPL 471 (549)
Q Consensus 468 ~~~~ 471 (549)
+|++
T Consensus 562 ~c~~ 565 (844)
T 3j0a_A 562 ECEL 565 (844)
T ss_dssp SSSC
T ss_pred cccc
Confidence 7764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-51 Score=446.88 Aligned_cols=442 Identities=31% Similarity=0.445 Sum_probs=360.2
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
++|++++|.+++..+ +.++++|++|++++|.+.+..|. ++++++|++|++++|.+++..+.. +..+++|++|+++
T Consensus 181 ~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA--ISTCTELKLLNIS 255 (768)
T ss_dssp CEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH--TTTCSSCCEEECC
T ss_pred CEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH--HhcCCCCCEEECC
Confidence 344444444443332 25677777777777777776665 888888888888888888777766 7888888888888
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCC-CCChhhcCC-CCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLT-KFPNFLQNQ-YHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
+|.+.. ..+.. .+++|++|++++|.++ .+|..+... ++|++|++++|.+++..|..+. .+++|++|++++|.+
T Consensus 256 ~n~l~~--~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 256 SNQFVG--PIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSNNF 330 (768)
T ss_dssp SSCCEE--SCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSSEE
T ss_pred CCcccC--ccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh--cCCCccEEECCCCcc
Confidence 886543 22222 6788999999999884 888877665 8999999999999888999998 899999999999988
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCC---C-CCcceeecccCCCCCcCchhhhc--CCCCCeEeCcCCcCCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---P-PGTIHYLASNNSLTGEIPSWICN--LNILESLVLSHNNLSG 233 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~-~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~Ls~n~l~~ 233 (549)
.+..+......... |++|++++|.+.+.+|.. . ++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+
T Consensus 331 ~~~ip~~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 331 SGELPMDTLLKMRG--LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEECCHHHHTTCTT--CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cCcCCHHHHhcCCC--CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 75444322333333 999999999999888876 3 38999999999999988888877 8899999999999998
Q ss_pred cCCcchhcCCCCCCeeecCCCccCCcCCCcccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
.+|..+..+. +|++|++++|.+++..|..+.. .+.+|..+..+++|++|++++|++++..|..+.
T Consensus 409 ~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 409 KIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp ECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred ccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 9998888766 8999999999999988887755 235677888889999999999999988888899
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhh-
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI- 378 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~- 378 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|++.+.+|.. +..+++| +.|++++|.+++.+|..+
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L-----~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSGNIPAE-LGDCRSL-----IWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEEECCGG-GGGCTTC-----CEEECCSSEEESBCCGGGG
T ss_pred cCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCCCcccCcCCHH-HcCCCCC-----CEEECCCCccCCcCChHHh
Confidence 99999999999999888776655 78899999999999998888854 6777777 889999998887766543
Q ss_pred ---------------------------------------------------------------------cCCCCCCEEEc
Q 040238 379 ---------------------------------------------------------------------ANLKGLQVLNL 389 (549)
Q Consensus 379 ---------------------------------------------------------------------~~l~~L~~L~l 389 (549)
..+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 34578999999
Q ss_pred cCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCC
Q 040238 390 QNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNS 464 (549)
Q Consensus 390 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~ 464 (549)
++|++++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.||+++|+++|.+|.. ..+..++.+.+..|.
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999999999999999999999999999999999999999999999999999999999865 344555666666554
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-50 Score=426.27 Aligned_cols=455 Identities=19% Similarity=0.185 Sum_probs=327.7
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++|||++|.+++..|.+|.++++|++|+|++|.+.+..|+.|.++++|++|++++|.+++..|.. |.++++|++|++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L 112 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA--LSGPKALKHLFF 112 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT--TSSCTTCCEEEC
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh--hcccccccEeec
Confidence 589999999999888999999999999999999999999999999999999999999999777777 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCccEEEeecCcCCCCCCcccccccCCCCc--EEEccCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLN--ALNISHN 157 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~--~L~L~~n 157 (549)
++|.++.++..++. .+++|++|++++|.++.++ ..+..+++|++|++++|.+++..+..+. .+++|+ .|++++|
T Consensus 113 ~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 113 IQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGN 189 (606)
T ss_dssp TTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTC
T ss_pred cccCcccCCcchhc-cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCC
Confidence 99998887666554 7899999999999997763 3445599999999999999877788887 889999 8899999
Q ss_pred cCCCCCCcccccc------------------------------------------------CCCCCccEEEccCCcCCCC
Q 040238 158 FLTGFDQHLVVLP------------------------------------------------ANKGDLLTFDLSSNNLQGP 189 (549)
Q Consensus 158 ~~~~~~~~~~~~~------------------------------------------------~~~~~L~~L~L~~n~l~~~ 189 (549)
.+.+..+..+... ....+++.|++++|.+.+.
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 8877665432110 0001366777777777665
Q ss_pred CCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCc-cc
Q 040238 190 LPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNT-FI 265 (549)
Q Consensus 190 ~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~ 265 (549)
.+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+.... +|++|++++|.+.+.++.. +.
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTT
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhh
Confidence 5432 667777777777776 5666677777777777777777755555555544 6777777777766544432 21
Q ss_pred cc-------------CC---CCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCC
Q 040238 266 KE-------------RR---IPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329 (549)
Q Consensus 266 ~~-------------~~---l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (549)
.. .. .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. .+..+++
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~ 426 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHL 426 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTT
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCccc
Confidence 10 00 0334455666666666666666555666666666666666666665543322 1255666
Q ss_pred CceeeCCCCccccccChhhhhccccccccccceEEccCCcCccc---CchhhcCCCCCCEEEccCCccccCCCcccCCCC
Q 040238 330 LRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV---IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP 406 (549)
Q Consensus 330 L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 406 (549)
|+.|++++|.+.+..| ..+..+++| +.|++++|.+++. .+..+..+++|++|++++|++++..|..|+.++
T Consensus 427 L~~L~l~~n~l~~~~~-~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSE-QLFDGLPAL-----QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500 (606)
T ss_dssp CCEEECTTCCCBTTCT-TTTTTCTTC-----CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCEEECCCCccCCcCH-HHHhCCCCC-----CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc
Confidence 6666666666654333 335555555 7777777777652 224577777777777777777777777777778
Q ss_pred CCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCC
Q 040238 407 NLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+|+.|++++|++++..|..+.+++.| .|++++|++++..|.. ..+..++.+.+.+||+.|+|+
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 88888888888777777777777777 7888888777665542 234555666777777777654
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.5e-48 Score=414.17 Aligned_cols=462 Identities=19% Similarity=0.164 Sum_probs=304.1
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++|+|++|.+++..+..|.++++|++|++++|.+.+..|+.|.++++|++|++++|.+++..+.. |.++++|++|++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~l~~L~~L~L 104 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNLTELHL 104 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT--TTTCTTCSEEEC
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh--hccCCCCCEEEC
Confidence 578999999998887888899999999999999988888888889999999999999888443334 788889999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCC-ChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++|.++.++...+. .+++|++|++++|.++.+ |..+..+++|++|++++|.+++..+..+....+++|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99887766554333 678888888888888544 4567788888888888888876666554322457788888888877
Q ss_pred CCCCCccccccC------------------------CCCCccEEEccCCcCCCCCCCCC-----CCcceeecccCCCCCc
Q 040238 160 TGFDQHLVVLPA------------------------NKGDLLTFDLSSNNLQGPLPVPP-----PGTIHYLASNNSLTGE 210 (549)
Q Consensus 160 ~~~~~~~~~~~~------------------------~~~~L~~L~L~~n~l~~~~~~~~-----~~L~~L~l~~n~~~~~ 210 (549)
.+..+..+.... ..++|+.|++++|.+.+..|..+ ++|+.|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 765543211000 00224444444444443333321 1244444444444443
Q ss_pred CchhhhcCCCCCeEeCcCCcCCCcCCcch--------------------------------hcCCCCCCeeecCCCccCC
Q 040238 211 IPSWICNLNILESLVLSHNNLSGLLPQCL--------------------------------GNSSDELSVLDLQGNNFFG 258 (549)
Q Consensus 211 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--------------------------------~~~~~~L~~L~L~~n~l~~ 258 (549)
.+.+|..+++|++|++++|.+.+..|..+ +...++|++|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 33444444444444444443332222111 1112244555555555444
Q ss_pred cCCCcccc------------------------------------------cCCCCccccCCCCCcEEEccCCcCCCCcC-
Q 040238 259 TIPNTFIK------------------------------------------ERRIPRSLINCSKLEFLGLGNNQISDTFP- 295 (549)
Q Consensus 259 ~~~~~~~~------------------------------------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~- 295 (549)
..+..|.. .+..|..+..+++|++|++++|.+.+.++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 43333221 00114456677788888888888775444
Q ss_pred cccCCCCCCCEEEccCcccccccCCC------------------------CCccCCCCCceeeCCCCccccccChhhhhc
Q 040238 296 SWLGTLPNLNVLILRSNIFYGIIKEP------------------------RTDCGFSKLRIIDLSNNIFIGTLPLKSFLC 351 (549)
Q Consensus 296 ~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 351 (549)
..+.++++|++|++++|.+.+..+.. ..+..+++|+.|++++|++. .++...|..
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~ 502 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEG 502 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhcc
Confidence 56777777777777777765543322 22356677777777777766 355556666
Q ss_pred cccccccccceEEccCCcCcccCc--------hhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCC
Q 040238 352 WNAMKIVNTTGIILSNNSFDSVIP--------ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIP 423 (549)
Q Consensus 352 l~~l~~~~l~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 423 (549)
+++| +.|++++|.+++..+ ..|.++++|++|++++|+++...++.|.++++|+.|++++|++++..+
T Consensus 503 l~~L-----~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 503 LEKL-----EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577 (680)
T ss_dssp CTTC-----CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccc-----CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH
Confidence 6666 888888888876422 236778888888888888885555678888889999999998887767
Q ss_pred cCccCCCCCcEEecccCcCcccCCCCC--CCCccCCCccCCCCCCCCCCC
Q 040238 424 QQLVELTFLEFFNVSDNHLTGLIPPGK--QFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 424 ~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~ 471 (549)
..|..+++|+.|++++|++++..|... .++.+..+.+.+||+.|+|+.
T Consensus 578 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 778888899999999998887655321 356677778888888888763
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.9e-48 Score=412.65 Aligned_cols=441 Identities=19% Similarity=0.138 Sum_probs=334.5
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|+|++|.+++..+..|.++++|++|++++|.+.+..|++|.++++|++|++++|.+++..|.. |.++++|++|++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~L 111 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS--FSGLTSLENLVA 111 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS--STTCTTCCEEEC
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh--cCCcccCCEEEc
Confidence 689999999999888889999999999999999999999999999999999999999999777777 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCC--CCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCc----EEEc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLT--KFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLN----ALNI 154 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~----~L~L 154 (549)
++|.++.++..... .+++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..+. .+.+|+ .|++
T Consensus 112 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 112 VETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ--FLRENPQVNLSLDM 188 (606)
T ss_dssp TTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH--HHHHCTTCCCEEEC
T ss_pred cCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh--hhhccccccceeec
Confidence 99988877765544 7899999999999995 5789999999999999999999987777776 555444 7888
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCCC----------------------------------------------
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG---------------------------------------------- 188 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---------------------------------------------- 188 (549)
++|.+...++..+... +|+.|++++|.+.+
T Consensus 189 ~~n~l~~~~~~~~~~~----~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGI----KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp TTCCCCEECTTTTTTC----EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred cCCCcceeCcccccCc----eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 8888877665532211 27777777665431
Q ss_pred ------------CCC--CCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCc-----------------
Q 040238 189 ------------PLP--VPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ----------------- 237 (549)
Q Consensus 189 ------------~~~--~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----------------- 237 (549)
..| ..+++|+.+++.+|.+.. +| .+..+++|++|++++|.+ +.+|.
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGS 341 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSC
T ss_pred heeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCc
Confidence 000 013444445555544432 22 344444555555555544 23442
Q ss_pred ---chhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccc
Q 040238 238 ---CLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314 (549)
Q Consensus 238 ---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 314 (549)
.+.. .++|++|++++|.+++.. ..|..+..+++|++|++++|.+.+ .|..+..+++|++|++++|.+
T Consensus 342 ~~~~~~~-l~~L~~L~ls~n~l~~~~--------~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 342 ISFKKVA-LPSLSYLDLSRNALSFSG--------CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp EECCCCC-CTTCCEEECCSSCEEEEE--------ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE
T ss_pred cchhhcc-CCCCCEEECcCCccCCCc--------chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc
Confidence 1112 225555555555554321 124456778888888888888775 457788888888888888888
Q ss_pred ccccC-CCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcc-cCchhhcCCCCCCEEEccCC
Q 040238 315 YGIIK-EPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS-VIPASIANLKGLQVLNLQNN 392 (549)
Q Consensus 315 ~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n 392 (549)
.+..+ ..+ ..+++|+.|++++|++.+..| ..+..+++| +.|++++|.+++ .+|..|..+++|++|++++|
T Consensus 412 ~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 412 KRVTEFSAF--LSLEKLLYLDISYTNTKIDFD-GIFLGLTSL-----NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp ESTTTTTTT--TTCTTCCEEECTTSCCEECCT-TTTTTCTTC-----CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCccChhhh--hccccCCEEECcCCCCCccch-hhhcCCCCC-----CEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 87755 233 678889999999988876555 446667666 899999999987 47888999999999999999
Q ss_pred ccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCC-ccCCCccCCCCCCCCCCC
Q 040238 393 SLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFA-TFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 393 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~n~~lc~~~~ 471 (549)
++++..|..|+.+++|++|++++|++++..|..|..+++|++|++++|+++...+....++ .++.+.+.+||+.|+++.
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9998888899999999999999999998889999999999999999999985433323333 367778888888887764
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.6e-48 Score=409.03 Aligned_cols=433 Identities=18% Similarity=0.185 Sum_probs=344.2
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..+.. +.++++|++|++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~--~~~l~~L~~L~L 136 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP--LHNQKTLESLYL 136 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC--CTTCTTCCEEEC
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcch--hccCCcccEEEC
Confidence 789999999999999999999999999999999999999999999999999999999999665666 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCcc--EEEeecCcCCCCCCcccccc-------------
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLL--VLDLSDNRIQGKVPKWLLDP------------- 144 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~~------------- 144 (549)
++|.++.++..... .+++|++|++++|.++.++ ..+..+++|+ .|++++|.+++..|..+...
T Consensus 137 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 137 GSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH
Confidence 99988876544443 4899999999999997774 5688888888 88888888876655544200
Q ss_pred ----------------------------------cC--CCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCC
Q 040238 145 ----------------------------------NM--QNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG 188 (549)
Q Consensus 145 ----------------------------------~l--~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 188 (549)
.+ .+|+.|++++|.+....+..+ .... +|++|++++|.++.
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~-~~l~--~L~~L~l~~n~l~~ 292 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFS--GLQELDLTATHLSE 292 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT-TTCT--TCSEEECTTSCCSC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh-cccc--CCCEEeccCCccCC
Confidence 00 145666666666666555422 2222 37777777777763
Q ss_pred CCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcC--CCc
Q 040238 189 PLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI--PNT 263 (549)
Q Consensus 189 ~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~ 263 (549)
+|.. +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++.......++|++|++++|.+++.. +..
T Consensus 293 -lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 293 -LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp -CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred -CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 3332 5677777777777776666677777777777777777665555543333446777777777666543 333
Q ss_pred ccc--------------cCCCCccccCCCCCcEEEccCCcCCCCcCc-ccCCCCCCCEEEccCcccccccCCCCCccCCC
Q 040238 264 FIK--------------ERRIPRSLINCSKLEFLGLGNNQISDTFPS-WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFS 328 (549)
Q Consensus 264 ~~~--------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 328 (549)
+.. .+..|..+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+ ..++
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~ 449 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLP 449 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCT
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCC
Confidence 322 112255678899999999999999877654 48899999999999999988876655 7899
Q ss_pred CCceeeCCCCccccc-cC-hhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCC
Q 040238 329 KLRIIDLSNNIFIGT-LP-LKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP 406 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~-~~-~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 406 (549)
+|++|++++|++.+. ++ ...+..+++| +.|++++|.+++..|..|..+++|++|++++|++++..|+.+..++
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRL-----EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred CCCEEECCCCCCCccccccchhhccCCCc-----cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 999999999999763 22 2457777777 9999999999999999999999999999999999999999999999
Q ss_pred CCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 407 NLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
.| .|++++|++++..|..+..+++|+.|++++|++.|.++.
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99 999999999988888899999999999999999998874
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-47 Score=402.02 Aligned_cols=436 Identities=19% Similarity=0.202 Sum_probs=340.8
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++||+++|.+++..+.+|.++++|++|++++|.+.+..++.|.++++|++|++++|.+++..+.. |..+++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh--hcCccccccccc
Confidence 578999999999888889999999999999999999988899999999999999999998666666 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCC--CChhhcCCCCccEEEeecCcCCCCCCcccccccCCCC----cEEEc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL----NALNI 154 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L----~~L~L 154 (549)
++|.++.++..+.. .+++|++|++++|.++. +|..+.++++|++|++++|.+++..+..+. .+++| +.|++
T Consensus 108 ~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~~~~~L~l 184 (570)
T 2z63_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDL 184 (570)
T ss_dssp TTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH--HHHTCTTCCCEEEC
T ss_pred cccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc--chhccchhhhhccc
Confidence 99988888775544 78999999999999964 788999999999999999999877777777 77788 89999
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCC-----------------------------------------------
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQ----------------------------------------------- 187 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~----------------------------------------------- 187 (549)
++|.+....+..+.. . +|+.|++++|...
T Consensus 185 ~~n~l~~~~~~~~~~--~--~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 185 SLNPMNFIQPGAFKE--I--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp TTCCCCEECTTTTTT--C--EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred CCCCceecCHHHhcc--C--cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 999988877653322 1 3888888776321
Q ss_pred -----------CCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCC
Q 040238 188 -----------GPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQG 253 (549)
Q Consensus 188 -----------~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 253 (549)
+..+.. +++|+++++++|.+. .+|.++..+ +|++|++++|.+. .+|.. ..++|++|++++
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~ 334 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEES
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcC
Confidence 111111 344555555555444 344444444 5555555555554 33331 122455555555
Q ss_pred CccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc--CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCc
Q 040238 254 NNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF--PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLR 331 (549)
Q Consensus 254 n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 331 (549)
|.+.+..+ ...+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+
T Consensus 335 n~~~~~~~------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~ 399 (570)
T 2z63_A 335 NKGGNAFS------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLE 399 (570)
T ss_dssp CBSCCBCC------------CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCC
T ss_pred Cccccccc------------cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc---ccccCCCC
Confidence 55443222 156889999999999988654 66788899999999999998877544 37889999
Q ss_pred eeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccc-cCCCcccCCCCCCCE
Q 040238 332 IIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ-GHIPSCLGNLPNLES 410 (549)
Q Consensus 332 ~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 410 (549)
.|++++|.+.+..+...+..++++ +.|++++|.+.+..|..|.++++|++|++++|.+. +.+|..+..+++|+.
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNL-----IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTC-----CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred EEEccCCccccccchhhhhcCCCC-----CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 999999998877776667777777 89999999999988999999999999999999997 568888999999999
Q ss_pred eeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040238 411 LDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 411 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
|++++|++++..|..|..+++|++|++++|++++..|.. ..++.++.+.+.+|++.|++|.
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999888999999999999999999999876643 4556677777888877776553
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.6e-46 Score=393.29 Aligned_cols=416 Identities=18% Similarity=0.121 Sum_probs=324.7
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|++++|.+++..|..|.++++|++|+|++|.+.+..|+.|+++++|++|++++|.+++..+.. +.++++|++|++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 135 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNV 135 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC--CTTCTTCCEEEC
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccc--cCCCCCCCEEeC
Confidence 688999999998888888899999999999999988888888999999999999999888555555 788888888888
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCC---------------------------CccEEEeecCc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQY---------------------------HLLVLDLSDNR 132 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~---------------------------~L~~L~l~~n~ 132 (549)
++|.+...........+++|++|++++|.++.++. .+..+. +|+.|++++|.
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 88877653322222367888888888887755432 233222 44455555443
Q ss_pred CC----------------------------------------------------------CCCCcccccccCCCCcEEEc
Q 040238 133 IQ----------------------------------------------------------GKVPKWLLDPNMQNLNALNI 154 (549)
Q Consensus 133 l~----------------------------------------------------------~~~~~~~~~~~l~~L~~L~L 154 (549)
++ +..|. +. .+++|+.|++
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l 292 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSL 292 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEE
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cc--cCCCCCEEEe
Confidence 32 00111 22 3455666666
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC-CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCC
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV-PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 233 (549)
++|.+..++ . .... ++|+.|++++|.+ +.+|. .+++|++|++++|...+.. .+..+++|++|++++|.+.+
T Consensus 293 ~~~~~~~l~-~--l~~~--~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 293 AGVSIKYLE-D--VPKH--FKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp ESCCCCCCC-C--CCTT--CCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred cCccchhhh-h--cccc--ccCCEEEcccccC-cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 666655444 1 1122 2388888888887 44443 4778888888888655443 56688999999999999885
Q ss_pred c--CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC-cccCCCCCCCEEEcc
Q 040238 234 L--LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILR 310 (549)
Q Consensus 234 ~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~ 310 (549)
. .+..+.... +|++|++++|.+++. |..+..+++|++|++++|++.+..+ ..+..+++|++|+++
T Consensus 365 ~~~~~~~~~~~~-~L~~L~L~~n~l~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 365 SGCCSYSDLGTN-SLRHLDLSFNGAIIM-----------SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEECCHHHHCCS-CCCEEECCSCSEEEE-----------CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred CcchhhhhccCC-cccEeECCCCccccc-----------hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 5 366666555 899999999998753 4456789999999999999998877 688999999999999
Q ss_pred CcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEcc
Q 040238 311 SNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQ 390 (549)
Q Consensus 311 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 390 (549)
+|.+.+..+..+ .++++|++|++++|++.+...+..+..+++| +.|++++|.+++..|..|..+++|++|+++
T Consensus 433 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 433 YTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNVFANTTNL-----TFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp TSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHhhccCCCC-----CEEECCCCcCCccChhhhcccccCCEEECC
Confidence 999998876655 8899999999999999875444567777777 999999999999999999999999999999
Q ss_pred CCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC-CCcEEecccCcCcccCCCC
Q 040238 391 NNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT-FLEFFNVSDNHLTGLIPPG 449 (549)
Q Consensus 391 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~~ 449 (549)
+|++++.+|..|..+++|+.|++++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 99999888999999999999999999999 6677788887 6999999999999998853
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.9e-45 Score=392.40 Aligned_cols=425 Identities=23% Similarity=0.220 Sum_probs=319.1
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.+|.++++++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+.. |.++++|++|+++
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--CQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH--HHHCTTCCEEECC
T ss_pred CeeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH--HhcccCcCEEECC
Confidence 46899999998 4566554 79999999999999988889999999999999999999777766 8999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~ 160 (549)
+|.++.++...+. .+++|++|++++|.++.++ ..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 82 ~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 82 HNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV--QLENLQELLLSNNKIQ 158 (680)
T ss_dssp SSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS--CCTTCCEEECCSSCCC
T ss_pred CCccCccChhhhc-cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc--ccccCCEEEccCCccc
Confidence 9998877765444 6899999999999998887 5789999999999999999988888887 8999999999999998
Q ss_pred CCCCccccccCCCCCccEEEccCCcCCCCCCCC------------------------------CCCcceeecccCCCCCc
Q 040238 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP------------------------------PPGTIHYLASNNSLTGE 210 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------------------------------~~~L~~L~l~~n~~~~~ 210 (549)
+..+..+. ....++|++|++++|.+.+..|.. .++|+.|++++|.+.+.
T Consensus 159 ~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 159 ALKSEELD-IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CBCHHHHG-GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred ccCHHHhh-ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 87655221 122234999999999998776642 26788999999999999
Q ss_pred CchhhhcCCC--CCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccC-------------------C
Q 040238 211 IPSWICNLNI--LESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKER-------------------R 269 (549)
Q Consensus 211 ~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-------------------~ 269 (549)
.|.++..++. |++|++++|.+.+..|..+..+. +|++|++++|.+++..+..|.... .
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccCcccccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 9999988755 99999999999977777776655 899999999999988877665411 2
Q ss_pred CCc----cccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc----------------------------cccc
Q 040238 270 IPR----SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI----------------------------FYGI 317 (549)
Q Consensus 270 l~~----~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----------------------------l~~~ 317 (549)
+|. .+..+++|++|++++|.+.+..+..|..+++|++|++++|. +.+.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 333 56788999999999999998888888888888888777664 3333
Q ss_pred cCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccc--
Q 040238 318 IKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQ-- 395 (549)
Q Consensus 318 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 395 (549)
.+.. +..+++|+.|++++|++.+.+|...|..++++ +.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 397 ~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 397 ESDA--FSWLGHLEVLDLGLNEIGQELTGQEWRGLENI-----FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp CTTT--TTTCTTCCEEECCSSCCEEECCSGGGTTCTTC-----CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred Chhh--hhCCCCCCEEeCCCCcCccccCcccccCcccc-----cEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 2322 36778888888888888877777777777766 66666666655544444444444444444444433
Q ss_pred cCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCc
Q 040238 396 GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 396 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
+.+|..|..+++|+.|++++|++++..+..|..+++|++|++++|+++
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 233444444444444444444444433344444444444444444444
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=404.10 Aligned_cols=449 Identities=22% Similarity=0.218 Sum_probs=347.2
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCcccc-CchhhcCCCCCCCeEecc
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTI-KLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~l~~L~~L~Ls 81 (549)
..|.++++++.+ |. -.+++++|+|++|.+.+..+..|.++++|++|++++|...+.+ +.. |.++++|++|+|+
T Consensus 8 ~~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~--f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA--FRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT--TSSCTTCCEEECT
T ss_pred EEEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH--hcCCCCCCEEECC
Confidence 578888999844 54 4579999999999999999999999999999999999766566 445 8999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCC-CChh--hcCCCCccEEEeecCcCCCCCC-cccccccCCCCcEEEccCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTK-FPNF--LQNQYHLLVLDLSDNRIQGKVP-KWLLDPNMQNLNALNISHN 157 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-l~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~L~~n 157 (549)
+|.++.+....+. .+++|++|++++|.++. +|.. +..+++|++|++++|.+++..+ ..+. .+++|++|++++|
T Consensus 82 ~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 82 SSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSN 158 (844)
T ss_dssp TCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEESS
T ss_pred CCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh--hCCCCCEEECCCC
Confidence 9998887655444 78999999999999954 5554 8999999999999999987655 5677 9999999999999
Q ss_pred cCCCCCCccccccCCCCCccEEEccCCcCCCCCCCC---CC------CcceeecccCCCCCcCchhhhc-----------
Q 040238 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---PP------GTIHYLASNNSLTGEIPSWICN----------- 217 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~------~L~~L~l~~n~~~~~~~~~l~~----------- 217 (549)
.+....+..+ .....++|+.|+++.|.+.+..|.. ++ .|+.|++++|.+.+..+..+..
T Consensus 159 ~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 159 QIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred cCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 9988766532 2221134999999999999877654 22 3899999999887666554432
Q ss_pred ---------------------------CCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCC
Q 040238 218 ---------------------------LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRI 270 (549)
Q Consensus 218 ---------------------------l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l 270 (549)
.++|+.|++++|.+.+..+..+..+. +|++|++++|.+++..+..
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~------- 309 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEA------- 309 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTT-------
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHH-------
Confidence 26799999999999876666665544 8999999999998766554
Q ss_pred CccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhh
Q 040238 271 PRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFL 350 (549)
Q Consensus 271 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 350 (549)
+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.+.-. +.
T Consensus 310 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i~~---~~ 381 (844)
T 3j0a_A 310 ---FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF--KFLEKLQTLDLRDNALTTIHF---IP 381 (844)
T ss_dssp ---TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS--CSCCCCCEEEEETCCSCCCSS---CC
T ss_pred ---hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh--cCCCCCCEEECCCCCCCcccC---CC
Confidence 4788999999999999998889999999999999999999988766555 788999999999998764211 00
Q ss_pred ccccc-------------------------------------cccccceEEccCCcCcccCch-hhcCCCCCCEEEccCC
Q 040238 351 CWNAM-------------------------------------KIVNTTGIILSNNSFDSVIPA-SIANLKGLQVLNLQNN 392 (549)
Q Consensus 351 ~l~~l-------------------------------------~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n 392 (549)
.+..+ ...+++.|++++|.+++..+. .+..+++|++|++++|
T Consensus 382 ~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp SCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred CcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 00000 112336677777776654333 3455677777777777
Q ss_pred ccc-----cCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCC---
Q 040238 393 SLQ-----GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNS--- 464 (549)
Q Consensus 393 ~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~--- 464 (549)
.++ +..++.|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..|.... ..++.+.+.+|.
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLA 540 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCC
T ss_pred ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCC
Confidence 775 33446688999999999999999988999999999999999999999977654332 344433332221
Q ss_pred ------------CCCCCCCCCCCCCC
Q 040238 465 ------------GLCGRPLSKGCESD 478 (549)
Q Consensus 465 ------------~lc~~~~~~~c~~~ 478 (549)
.+.++|+.|.|...
T Consensus 541 ~~~~~~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 541 PNPDVFVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCSCCCSSCCEEEEEEECCCCSSSCC
T ss_pred CChhHhCCcCEEEecCCCcccccccH
Confidence 23467888999753
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.8e-45 Score=383.36 Aligned_cols=414 Identities=17% Similarity=0.146 Sum_probs=255.1
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++||+++|.+++..|..|.++++|++|++++|.+.+..|+.|.++++|++|++++|.+++..+.. |.++++|++|++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L 105 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW--FGPLSSLKYLNL 105 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH--HTTCTTCCEEEC
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH--hccCCCCcEEEC
Confidence 689999999999888999999999999999999999999999999999999999999999666555 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCC-CCCCC-hhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCN-LTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF 158 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~-l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 158 (549)
++|.++.++.......+++|++|++++|. ++.+| ..+..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK--SIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEEEEEEEECSB
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh--ccccCceEecccCc
Confidence 99988866543334478999999999998 57777 4789999999999999999988888887 88888888888887
Q ss_pred CCCCCCccccccCCCCCccEEEccCCcCCCCC------CCCCCCcceeecccCCCCCcCchhh----hcCCC--------
Q 040238 159 LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPL------PVPPPGTIHYLASNNSLTGEIPSWI----CNLNI-------- 220 (549)
Q Consensus 159 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~~L~~L~l~~n~~~~~~~~~l----~~l~~-------- 220 (549)
+...+.. ..... ++|++|++++|.+.+.. ....++++.|++.+|.+.+..+..+ ..++.
T Consensus 184 ~~~~~~~-~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 184 SAFLLEI-FADIL--SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp STTHHHH-HHHST--TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred ccccchh-hHhhc--ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 6544332 11122 33888888888887632 1225666666666665554322222 22333
Q ss_pred ---------------------------------------------------CCeEeCcCCcCCCcCCcchhcCCCCCCee
Q 040238 221 ---------------------------------------------------LESLVLSHNNLSGLLPQCLGNSSDELSVL 249 (549)
Q Consensus 221 ---------------------------------------------------L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 249 (549)
|++|++++|.+. .+|..++...++|++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFL 339 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEE
Confidence 444444444443 3343333222245555
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC--cccCCCCCCCEEEccCcccccccCCCCCccCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP--SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGF 327 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 327 (549)
++++|.+++..+.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+..++ .. +..+
T Consensus 340 ~Ls~N~l~~~~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~--~~~~ 409 (549)
T 2z81_A 340 DLSENLMVEEYLKN-------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DS--CQWP 409 (549)
T ss_dssp ECCSSCCCHHHHHH-------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC-SC--CCCC
T ss_pred EccCCccccccccc-------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC-hh--hccc
Confidence 55555444322110 0112344455555555555543221 23444455555555555544321 11 1344
Q ss_pred CCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCC
Q 040238 328 SKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPN 407 (549)
Q Consensus 328 ~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 407 (549)
++|++|++++|++. .+|.... + +++.|++++|++++.. ..+++|++|++++|+++ .+|+ ...+++
T Consensus 410 ~~L~~L~Ls~N~l~-~l~~~~~---~-----~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~ 474 (549)
T 2z81_A 410 EKMRFLNLSSTGIR-VVKTCIP---Q-----TLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPV 474 (549)
T ss_dssp TTCCEEECTTSCCS-CCCTTSC---T-----TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTT
T ss_pred ccccEEECCCCCcc-cccchhc---C-----CceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCcc
Confidence 45555555555443 1221110 1 2255555555554432 24455555555555554 3333 234455
Q ss_pred CCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 408 LESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 408 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
|+.|++++|++++..|..+..+++|+.|++++|++.|.+|
T Consensus 475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 475 LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 5555555555554444445555555555555555555544
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6e-45 Score=386.94 Aligned_cols=423 Identities=21% Similarity=0.250 Sum_probs=333.2
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCC------c---------------------------ccccccc----
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVS------G---------------------------QITSSLR---- 44 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~------~---------------------------~~~~~~~---- 44 (549)
+.|+|++|.++|.+|++|+++++|++|+|++|.+. + ..+..+.
T Consensus 84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~ 163 (636)
T 4eco_A 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163 (636)
T ss_dssp EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHH
Confidence 57999999999999999999999999999999651 1 0011111
Q ss_pred ---------------CCCCCCEEeCC--CCcCccccCchhhcCCCCCCCeEeccCCccce------------------ee
Q 040238 45 ---------------NLSQLFFLDLA--KNSYRGTIKLDVLLTSWKNLEFLALSLNRLSV------------------LT 89 (549)
Q Consensus 45 ---------------~l~~L~~L~Ls--~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------~~ 89 (549)
....++.+.+. +|++++ +|.. +.++++|++|++++|.++. ++
T Consensus 164 ~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHhhcCccccccccccccchhhhhhccccCCCcc-CCHH--HhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 11223333332 577887 7877 8999999999999998776 44
Q ss_pred ccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCc-CCC-CCCcccccccC------CCCcEEEccCCcCC
Q 040238 90 KATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNR-IQG-KVPKWLLDPNM------QNLNALNISHNFLT 160 (549)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l------~~L~~L~L~~n~~~ 160 (549)
.......+++|++|++++|.+ +.+|..+.++++|++|++++|+ +++ .+|..+. .+ ++|++|++++|++.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~--~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ--ALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH--HHHHSGGGGTCCEEECCSSCCS
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH--hhhccccCCCCCEEECCCCcCC
Confidence 332211588999999999987 7889999999999999999998 887 7888776 55 89999999999998
Q ss_pred CCCCccccccCCCCCccEEEccCCcCCCCCCCC--CCCcceeecccCCCCCcCchhhhcCCC-CCeEeCcCCcCCCcCCc
Q 040238 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP--PPGTIHYLASNNSLTGEIPSWICNLNI-LESLVLSHNNLSGLLPQ 237 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~ 237 (549)
.++....+.... +|+.|++++|.+.+.+|.. +++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|.
T Consensus 319 ~ip~~~~l~~l~--~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 TFPVETSLQKMK--KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp SCCCHHHHTTCT--TCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred ccCchhhhccCC--CCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 655411123333 3999999999999888832 678999999999998 88888999999 999999999999 7887
Q ss_pred chhcC-CCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccc
Q 040238 238 CLGNS-SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYG 316 (549)
Q Consensus 238 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 316 (549)
.+... .++|++|++++|.+++..|..+.. .......+++|++|++++|.++...+..+..+++|++|++++|.+..
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~---~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDP---LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCT---TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcc---cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 66543 237999999999999887765520 01111256799999999999996555566779999999999999986
Q ss_pred ccCCCCC-----ccCCCCCceeeCCCCccccccChhhh-hccccccccccceEEccCCcCcccCchhhcCCCCCCEEEc-
Q 040238 317 IIKEPRT-----DCGFSKLRIIDLSNNIFIGTLPLKSF-LCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNL- 389 (549)
Q Consensus 317 ~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~-~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l- 389 (549)
+....+. ..++++|+.|++++|++. .+|...+ ..+++| +.|++++|.+++ +|..+..+++|++|++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-----~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-----VGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-----CEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc-----CEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 5444331 112339999999999998 6776544 367777 999999999998 7888999999999999
Q ss_pred -----cCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccC
Q 040238 390 -----QNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLI 446 (549)
Q Consensus 390 -----~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 446 (549)
++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|++++|++.+.-
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 56778889999999999999999999999 47887765 79999999999998654
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-44 Score=373.61 Aligned_cols=419 Identities=19% Similarity=0.160 Sum_probs=265.6
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
++||+++|.++ .+|..+. ++|++|++++|.+.+..|+.|.++++|++|++++|.+++..|.. |.++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV--FKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG--GTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH--hhcccCCCEEecC
Confidence 58999999999 5666665 89999999999999988899999999999999999999777777 8999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCC--CChhhcCCCCccEEEeecCcCCCCCCcccccccCCCC--cEEEccCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL--NALNISHN 157 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n 157 (549)
+|.++.++.. .+++|++|++++|.++. +|..+..+++|++|++++|.+++ ..+. .+++| +.|++++|
T Consensus 78 ~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~--~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 78 HNKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL--PIAHLNISKVLLVLG 148 (520)
T ss_dssp SSCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG--GGTTSCEEEEEEEEC
T ss_pred CCceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcc--ccccceeeEEEeecc
Confidence 9999987766 58999999999999965 67899999999999999999875 4455 77888 99999999
Q ss_pred cC--CCCCCccccccCCCCCccEEEccCCcCCCCCCCC----CCCcceeecccCC-------------------------
Q 040238 158 FL--TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP----PPGTIHYLASNNS------------------------- 206 (549)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~L~~L~l~~n~------------------------- 206 (549)
.+ .+..+..+. .... ....+++++|.+.+.++.. +++|+.+++++|.
T Consensus 149 ~l~~~~~~~~~l~-~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 149 ETYGEKEDPEGLQ-DFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp TTTTSSCCTTTTT-TCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred ccccccccccccc-cccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 88 444333211 1110 1224455555544433321 3344444444332
Q ss_pred -----CCCcCchhhh---cCCCCCeEeCcCCcCCCcCCcchh----cCCCCCCeeecCCCccCCcCC-Ccccc-------
Q 040238 207 -----LTGEIPSWIC---NLNILESLVLSHNNLSGLLPQCLG----NSSDELSVLDLQGNNFFGTIP-NTFIK------- 266 (549)
Q Consensus 207 -----~~~~~~~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~-~~~~~------- 266 (549)
+.+..+..+. .+++|++|++++|.+.+.+|..++ ...+.|+.+++++|.+ .+| ..+..
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCC
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCce
Confidence 2211111110 123566666666666666666552 1222555555555555 222 11000
Q ss_pred ------cCCC-Ccc-ccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCC
Q 040238 267 ------ERRI-PRS-LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNN 338 (549)
Q Consensus 267 ------~~~l-~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 338 (549)
...+ +.. ...+++|++|++++|++++..|..+..+++|++|++++|.+.++...+..+..+++|++|++++|
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 0000 000 13456666666666666665566666666666666666666543211112245666666666666
Q ss_pred ccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcc
Q 040238 339 IFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418 (549)
Q Consensus 339 ~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 418 (549)
++.+.+|...+..++.+ +.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 385 ~l~~~l~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSL-----LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp CCBCCGGGCSCCCCTTC-----CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred cCCcccccchhccCccC-----CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence 66655555545544444 6666666666655544432 56666666666666 5555555666666666666666
Q ss_pred cccCCc-CccCCCCCcEEecccCcCcccCC
Q 040238 419 SGQIPQ-QLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 419 ~~~~~~-~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+. +|. .+..+++|++|++++|+++|.++
T Consensus 457 ~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 457 KS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred Cc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 63 333 35666666666666666666554
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=377.66 Aligned_cols=420 Identities=18% Similarity=0.184 Sum_probs=346.9
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|++|||++|.+++..+..|.++++|++|++++|.+.+..++.|.++++|++|++++|.+++..+.. +.++++|++|++
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--~~~l~~L~~L~L 131 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNV 131 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS--CTTCTTCCEEEC
T ss_pred ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcc--ccccccccEEec
Confidence 689999999999888889999999999999999999998899999999999999999998555545 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCc----cEEEeecCcCCCCCCcccccccCCCCcEEEcc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHL----LVLDLSDNRIQGKVPKWLLDPNMQNLNALNIS 155 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~ 155 (549)
++|.++.+........+++|++|++++|.++.++ ..+..+++| +.|++++|.+++..+..+. .+ +|+.|+++
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~-~L~~L~l~ 208 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EI-RLHKLTLR 208 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TC-EEEEEEEE
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc--cC-cceeEecc
Confidence 9998876432222336899999999999997765 467777777 8999999999877777775 33 78888887
Q ss_pred CCcCC----------------------------------------------------------CCCCccccccCCCCCcc
Q 040238 156 HNFLT----------------------------------------------------------GFDQHLVVLPANKGDLL 177 (549)
Q Consensus 156 ~n~~~----------------------------------------------------------~~~~~~~~~~~~~~~L~ 177 (549)
+|... +..+. .... .++|+
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~--l~~L~ 285 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNC--LTNVS 285 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT-TTGG--GTTCS
T ss_pred cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh-hhcC--cCccc
Confidence 76221 11111 1111 23499
Q ss_pred EEEccCCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCC
Q 040238 178 TFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGN 254 (549)
Q Consensus 178 ~L~L~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n 254 (549)
.|++++|.+.+ +|.. . +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ...++|++|++++|
T Consensus 286 ~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n 357 (570)
T 2z63_A 286 SFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRN 357 (570)
T ss_dssp EEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSS
T ss_pred EEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCC
Confidence 99999998875 4432 5 9999999999998 4554 4789999999999998866665 33458999999999
Q ss_pred ccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceee
Q 040238 255 NFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 255 ~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (549)
.+++.. ..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+.. .+..+++|++|+
T Consensus 358 ~l~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~ 427 (570)
T 2z63_A 358 GLSFKG--------CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLD 427 (570)
T ss_dssp CCBEEE--------EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEE
T ss_pred ccCccc--------cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-hhhcCCCCCEEe
Confidence 987542 1134567899999999999999865554 899999999999999998775422 237899999999
Q ss_pred CCCCccccccChhhhhccccccccccceEEccCCcCc-ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD-SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDL 413 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 413 (549)
+++|.+.+..| ..+..+++| +.|++++|.++ +.+|..|..+++|++|++++|++++..|..|..+++|+.|++
T Consensus 428 l~~n~l~~~~~-~~~~~l~~L-----~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 428 ISHTHTRVAFN-GIFNGLSSL-----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CTTSCCEECCT-TTTTTCTTC-----CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCCcccccch-hhhhcCCcC-----cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 99999887655 557777777 99999999998 578899999999999999999999888999999999999999
Q ss_pred CCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCC
Q 040238 414 SNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQF 452 (549)
Q Consensus 414 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 452 (549)
++|++++..|..|..+++|+.|++++|+++|.+|....+
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999888888999999999999999999999865433
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.5e-44 Score=384.50 Aligned_cols=419 Identities=19% Similarity=0.217 Sum_probs=329.3
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEc-cCCcCCcccccc--------------------------------------
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHI-AKCNVSGQITSS-------------------------------------- 42 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~~~~~~~~~-------------------------------------- 42 (549)
+.|+|++|.++|.+|++|+++++|++|+| ++|.+.+..+-.
T Consensus 326 ~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp EEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence 57999999999999999999999999999 788765542111
Q ss_pred -------------ccCCCCCCEEeCCC--CcCccccCchhhcCCCCCCCeEeccCCccce------------------ee
Q 040238 43 -------------LRNLSQLFFLDLAK--NSYRGTIKLDVLLTSWKNLEFLALSLNRLSV------------------LT 89 (549)
Q Consensus 43 -------------~~~l~~L~~L~Ls~--n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------~~ 89 (549)
......++.+.+.. |.+++ +|.. +.++++|++|+|++|.++. ++
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~--l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHhhhCccccccccccccchhhceeccccCcccc-hhHH--HhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 01122344444443 77886 7877 8999999999999998876 33
Q ss_pred ccCCCcCCCCCCEEEccCCCC-CCCChhhcCCCCccEEEeecCc-CCC-CCCcccccccC-------CCCcEEEccCCcC
Q 040238 90 KATSNTTSQKLKYIGLRSCNL-TKFPNFLQNQYHLLVLDLSDNR-IQG-KVPKWLLDPNM-------QNLNALNISHNFL 159 (549)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~l-------~~L~~L~L~~n~~ 159 (549)
.......+++|++|++++|.+ +.+|..+.++++|++|++++|+ +++ .+|..+. .+ ++|+.|++++|.+
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~--~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT--RLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH--HHHHCTTTTTTCCEEECCSSCC
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH--hhhhcccccCCccEEEeeCCcC
Confidence 332212689999999999986 8899999999999999999998 887 6777665 44 4999999999999
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCC--CCCcceeecccCCCCCcCchhhhcCCC-CCeEeCcCCcCCCcCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP--PPGTIHYLASNNSLTGEIPSWICNLNI-LESLVLSHNNLSGLLP 236 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~ 236 (549)
..++....+.... +|+.|++++|.+. .+|.. +++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|
T Consensus 561 ~~ip~~~~l~~L~--~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 EEFPASASLQKMV--KLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp CBCCCHHHHTTCT--TCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred CccCChhhhhcCC--CCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 8555411122333 3999999999998 66632 788999999999999 88888999999 999999999998 778
Q ss_pred cchhcCC-CCCCeeecCCCccCCcCCCcccccCCCCcccc--CCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc
Q 040238 237 QCLGNSS-DELSVLDLQGNNFFGTIPNTFIKERRIPRSLI--NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI 313 (549)
Q Consensus 237 ~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 313 (549)
..+.... ++|+.|++++|.+++.+|.. +..+. .+++|++|++++|.++...+..+..+++|+.|++++|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l-------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNI-------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSC-------SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccc-------hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 7665443 24999999999998866532 22223 34589999999999995444445589999999999999
Q ss_pred cccccCCCCC-----ccCCCCCceeeCCCCccccccChhhh-hccccccccccceEEccCCcCcccCchhhcCCCCCCEE
Q 040238 314 FYGIIKEPRT-----DCGFSKLRIIDLSNNIFIGTLPLKSF-LCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVL 387 (549)
Q Consensus 314 l~~~~~~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~-~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L 387 (549)
+..+....+. ..++++|+.|++++|++. .+|...+ ..+++| +.|+|++|.+++ +|..+..+++|+.|
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-----~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-----SNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-----CEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-----CEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 9865444331 113349999999999988 6776543 366767 999999999998 68888999999999
Q ss_pred EccC------CccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 388 NLQN------NSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 388 ~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++...-+
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 9976 788889999999999999999999999 58888765 699999999999876543
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.2e-42 Score=368.59 Aligned_cols=423 Identities=21% Similarity=0.186 Sum_probs=270.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++|||++|.|+++.+.+|.++++|++|+|++|.+.++.+++|.++++|++|+|++|++++..+.. |.++++|++|++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~--f~~L~~L~~L~L 131 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--FSGLSSLQKLVA 131 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG--GTTCTTCCEEEC
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH--hcCCCCCCEEEC
Confidence 589999999999888889999999999999999999999999999999999999999998544444 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCC--CChhhcCCCCccEEEeecCcCCCCCCcccccccCCCC----cEEEc
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL----NALNI 154 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L----~~L~L 154 (549)
++|.++.++...+. .+++|++|++++|.++. +|..+..+++|++|++++|++++..+..+. .+.++ ..+++
T Consensus 132 s~N~l~~l~~~~~~-~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~--~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 132 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDL 208 (635)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH--HHHTCTTCCCEEEC
T ss_pred CCCcCCCCChhhhh-cCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc--chhhhhhhhhhhhc
Confidence 99998887765544 68999999999999954 577889999999999999999877777665 43332 34556
Q ss_pred cCCcCCCCCCccccccC---------------------------------------------------------------
Q 040238 155 SHNFLTGFDQHLVVLPA--------------------------------------------------------------- 171 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~--------------------------------------------------------------- 171 (549)
+.|.+..+.+..+....
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 66555433222110000
Q ss_pred ---------------CCCCccEEEccCCcCCCCCCC-CCCCcceeecccCCCCCcCch-------------------hhh
Q 040238 172 ---------------NKGDLLTFDLSSNNLQGPLPV-PPPGTIHYLASNNSLTGEIPS-------------------WIC 216 (549)
Q Consensus 172 ---------------~~~~L~~L~L~~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~-------------------~l~ 216 (549)
...+++.+++..+.+....+. ....++.|++.+|.+....+. ...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 000011111111111110000 133455555555544433221 112
Q ss_pred cCCCCCeEeCcCCcCCC--cCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 217 NLNILESLVLSHNNLSG--LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
.+++|+.|++++|.+.. ..+....... +|+++++..+..... +..+..+++|+.++++.+......
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~~~~~~~~~~-----------~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVITM-----------SSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCS-CCCEEECCSCSEEEE-----------CSCCTTCTTCCEEECTTSEEESTT
T ss_pred cccccccchhhccccccccccccchhhhh-hhhhhhccccccccc-----------cccccccccccchhhhhccccccc
Confidence 34444555555444431 1222222222 445555544443321 223345666666666666554333
Q ss_pred C-cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCccc
Q 040238 295 P-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV 373 (549)
Q Consensus 295 ~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~ 373 (549)
+ ..+..+++++.++++.|.+.+..+..+ ..++.++.|++++|++.+.++++.|..+++| +.|+|++|++++.
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-----~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNL-----TFLDLSQCQLEQL 509 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccc--ccchhhhhhhhhhcccccccCchhhhhcccc-----CEEECCCCccCCc
Confidence 2 345566667777777776666655444 5666777777777665544444555555555 6677777777766
Q ss_pred CchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCC-CCCcEEecccCcCcccCC
Q 040238 374 IPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVEL-TFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 374 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p 447 (549)
.|..|.++++|++|+|++|++++..+..|+++++|+.|+|++|++++..|..|..+ ++|++|++++|+|.|.|.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 66667777777777777777766666666777777777777777776666666666 467777777777776665
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-42 Score=364.61 Aligned_cols=409 Identities=19% Similarity=0.201 Sum_probs=302.9
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+++|+++|.+++ +|..+. ++|++|++++|.+.+..++.|.++++|++|++++|.+++..+.. |..+++|++|+++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV--FLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT--TTTCTTCCEEECT
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH--hCCCCCCCEEECC
Confidence 589999999995 565554 89999999999999998899999999999999999999777766 8999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCCcccccccCCCC--cEEEccCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNL--NALNISHN 157 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n 157 (549)
+|.++.++.. .+++|++|++++|.++.++ ..+.++++|++|++++|.+++. .+. .+++| +.|++++|
T Consensus 109 ~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~--~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 109 HNRLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLL--PVAHLHLSCILLDLV 179 (562)
T ss_dssp TSCCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTG--GGTTSCEEEEEEEES
T ss_pred CCcCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chh--hhhhceeeEEEeecc
Confidence 9999977665 5899999999999997654 7899999999999999999753 343 55666 99999999
Q ss_pred cC--CCCCCccccccCCCCCccEEEccCCcCCCCCCCC----CCCcceeecccC--------------------------
Q 040238 158 FL--TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP----PPGTIHYLASNN-------------------------- 205 (549)
Q Consensus 158 ~~--~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~L~~L~l~~n-------------------------- 205 (549)
.+ .+..+..+.. .... ...++++.|.+.+.++.. +++|+.+++++|
T Consensus 180 ~l~~~~~~~~~l~~-l~~~-~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 180 SYHIKGGETESLQI-PNTT-VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp SCCCCSSSCCEEEE-CCEE-EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccCcccccc-cCcc-eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 88 5544432211 1100 112334444433322211 222333333222
Q ss_pred --CCCCc----CchhhhcCCCCCeEeCcCCcCCCcCCcchh----------------------------cC--CCCCCee
Q 040238 206 --SLTGE----IPSWICNLNILESLVLSHNNLSGLLPQCLG----------------------------NS--SDELSVL 249 (549)
Q Consensus 206 --~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----------------------------~~--~~~L~~L 249 (549)
.+.+. .+.. ...++|++|++++|.+.+.+|..++ .. ..+|++|
T Consensus 258 ~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 258 HIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred CCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 11110 0000 1122455555555555544444331 11 1247777
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (549)
++++|.+..... ...+++|++|++++|.+++..|..+..+++|++|++++|.+.++...+..+..+++
T Consensus 337 ~l~~n~~~~~~~------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 337 SISDTPFIHMVC------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404 (562)
T ss_dssp EEESSCCCCCCC------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred EccCCCcccccC------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence 777777643210 15688999999999999988888999999999999999999875432333478999
Q ss_pred CceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCC
Q 040238 330 LRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLE 409 (549)
Q Consensus 330 L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 409 (549)
|++|++++|++.+.+|...+..++.+ +.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~ 476 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESI-----LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTC-----CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred CCEEECCCCcCCCccChhhhcCcccC-----CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence 99999999999887888778777777 9999999999877665543 79999999999998 6777677999999
Q ss_pred EeeCCCCcccccCCcC-ccCCCCCcEEecccCcCcccCCC
Q 040238 410 SLDLSNNKFSGQIPQQ-LVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 410 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
.|++++|+++ .+|.. +..+++|+.|++++|++.|.||.
T Consensus 477 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 477 ELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp EEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred EEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 9999999999 45554 88999999999999999998874
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.4e-43 Score=370.89 Aligned_cols=419 Identities=19% Similarity=0.202 Sum_probs=336.1
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCc------c------ccC---------------------chh--
Q 040238 23 RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYR------G------TIK---------------------LDV-- 67 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~---------------------~~~-- 67 (549)
.+++.|+|++|++.+.+|..|+++++|++|++++|.+. + .+| ...
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999762 1 000 000
Q ss_pred ---------------hcCCCCCCCeEecc--CCccceeeccCCCcCCCCCCEEEccCCCCCC------------------
Q 040238 68 ---------------LLTSWKNLEFLALS--LNRLSVLTKATSNTTSQKLKYIGLRSCNLTK------------------ 112 (549)
Q Consensus 68 ---------------~~~~l~~L~~L~Ls--~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------ 112 (549)
.......++.+.+. +|.++.++.. ...+++|++|++++|.++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH--HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 00111122223332 4555554332 2278999999999999977
Q ss_pred CChhhc--CCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc-CCC-CCCccccccC----CCCCccEEEccCC
Q 040238 113 FPNFLQ--NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF-LTG-FDQHLVVLPA----NKGDLLTFDLSSN 184 (549)
Q Consensus 113 l~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~~~~----~~~~L~~L~L~~n 184 (549)
+|..+. ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ ..+... ... ..++|++|++++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCC
Confidence 999988 999999999999999999999998 99999999999998 775 333211 111 1133999999999
Q ss_pred cCCCCCCC-----CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCC-CCeeecCCCccCC
Q 040238 185 NLQGPLPV-----PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDE-LSVLDLQGNNFFG 258 (549)
Q Consensus 185 ~l~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~ 258 (549)
.++ .+|. .+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+. + |++|++++|.++
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK- 390 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-
Confidence 999 6776 38899999999999998999 8999999999999999999 8888887776 6 999999999997
Q ss_pred cCCCcccccCCCCccccC--CCCCcEEEccCCcCCCCcCcccC-------CCCCCCEEEccCcccccccCCCCCccCCCC
Q 040238 259 TIPNTFIKERRIPRSLIN--CSKLEFLGLGNNQISDTFPSWLG-------TLPNLNVLILRSNIFYGIIKEPRTDCGFSK 329 (549)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~--~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (549)
.+|.. +.. +++|++|++++|.+.+..|..+. .+++|++|++++|.+..+....+ ..+++
T Consensus 391 ~lp~~----------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~l~~ 458 (636)
T 4eco_A 391 YIPNI----------FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF--STGSP 458 (636)
T ss_dssp SCCSC----------CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHH--HTTCC
T ss_pred ccchh----------hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHH--ccCCC
Confidence 44443 344 34899999999999998888888 78899999999999986543322 56899
Q ss_pred CceeeCCCCccccccChhhhhcccc-c-cccccceEEccCCcCcccCchhhc--CCCCCCEEEccCCccccCCCcccCCC
Q 040238 330 LRIIDLSNNIFIGTLPLKSFLCWNA-M-KIVNTTGIILSNNSFDSVIPASIA--NLKGLQVLNLQNNSLQGHIPSCLGNL 405 (549)
Q Consensus 330 L~~L~ls~n~l~~~~~~~~~~~l~~-l-~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l 405 (549)
|++|++++|++. .+|...+..... + ...+++.|++++|.++ .+|..+. .+++|++|++++|++++ +|..+..+
T Consensus 459 L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l 535 (636)
T 4eco_A 459 LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535 (636)
T ss_dssp CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred CCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC
Confidence 999999999998 788776654430 0 0013499999999999 5677776 99999999999999996 88899999
Q ss_pred CCCCEeeC------CCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCC
Q 040238 406 PNLESLDL------SNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCG 468 (549)
Q Consensus 406 ~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~ 468 (549)
++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|... .+.++.+.+.+|+..|-
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 99999999 56888889999999999999999999999 5777653 36777888888887764
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-42 Score=365.20 Aligned_cols=441 Identities=20% Similarity=0.209 Sum_probs=293.3
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
+.|.+++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..+.. |..+++|++|++++
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA--FYSLGSLEHLDLSD 83 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTT
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh--ccccccCCEEECCC
Confidence 5688889998 4555554 79999999999999998999999999999999999999776666 89999999999999
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCC--CChhhcCCCCccEEEeecCcCCCCCC-cccccccCCCCcEEEccCCcC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTK--FPNFLQNQYHLLVLDLSDNRIQGKVP-KWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~L~~n~~ 159 (549)
|.++..+...+. .+++|++|++++|.++. +|..+..+++|++|++++|.+.+.+| ..+. .+++|++|++++|.+
T Consensus 84 n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 84 NHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA--GLTSLNELEIKALSL 160 (549)
T ss_dssp SCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTC
T ss_pred CccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhh--cccccCeeeccCCcc
Confidence 988877654333 68999999999999964 56789999999999999998544554 5777 899999999999999
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCC---CCCCCcceeecccCCCCCcC--c-hhhhcCCCCCeEeCcCCcCCC
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLP---VPPPGTIHYLASNNSLTGEI--P-SWICNLNILESLVLSHNNLSG 233 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~--~-~~l~~l~~L~~L~Ls~n~l~~ 233 (549)
.+..+.. ..... +|++|++++|.+..... ..+++|++|++++|.+.+.. + .....+++|++|++++|.+.+
T Consensus 161 ~~~~~~~-l~~l~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 161 RNYQSQS-LKSIR--DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp CEECTTT-TTTCS--EEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccChhh-hhccc--cCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 8765552 23333 49999999998753221 13789999999999998742 2 223457899999999998775
Q ss_pred cCCcchh---cCCCCCCeeecCCCccCCcCCC---------cccc-----------------------------------
Q 040238 234 LLPQCLG---NSSDELSVLDLQGNNFFGTIPN---------TFIK----------------------------------- 266 (549)
Q Consensus 234 ~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~---------~~~~----------------------------------- 266 (549)
..+..+. ...++|+.+++++|.+.+...- .+..
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 4433322 1123567777777665542110 0000
Q ss_pred ----cCCCCccc-cCCCCCcEEEccCCcCCCCcC---cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCC
Q 040238 267 ----ERRIPRSL-INCSKLEFLGLGNNQISDTFP---SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNN 338 (549)
Q Consensus 267 ----~~~l~~~l-~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 338 (549)
...+|..+ ..+++|++|++++|++.+..| ..++.+++|++|++++|.+++..+....+..+++|++|++++|
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 00122222 234444444444444443322 1233444445555554444433210011234444555555555
Q ss_pred ccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcc
Q 040238 339 IFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKF 418 (549)
Q Consensus 339 ~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 418 (549)
++. .+|.. +..+++| +.|++++|.+++. |..+ .++|++|++++|++++. +..+++|++|++++|++
T Consensus 398 ~l~-~lp~~-~~~~~~L-----~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 398 TFH-PMPDS-CQWPEKM-----RFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKL 463 (549)
T ss_dssp CCC-CCCSC-CCCCTTC-----CEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCC
T ss_pred CCc-cCChh-hcccccc-----cEEECCCCCcccc-cchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCcc
Confidence 443 23321 2222222 4555555554432 1111 13555555555555532 24788999999999999
Q ss_pred cccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCC
Q 040238 419 SGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 419 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+ .+|. ...+++|++|++++|++++..|.. ..+..++.+.+.+|++.|++|
T Consensus 464 ~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 464 K-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp S-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred C-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8 6665 467899999999999999877753 456677778888888888765
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-40 Score=337.47 Aligned_cols=396 Identities=19% Similarity=0.180 Sum_probs=279.6
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.++.+++.++ .+|. + .++|++|+|++|.+.+..|..|.++++|++|++++|.+.+.++.. .|..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-TTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc-cccccccCCEEeCC
Confidence 35777888887 4454 3 278999999999999988999999999999999999997666543 48999999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCC-CChh--hcCCCCccEEEeecCcCCCCCCcc-cccccCCCCcEEEccCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTK-FPNF--LQNQYHLLVLDLSDNRIQGKVPKW-LLDPNMQNLNALNISHN 157 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-l~~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n 157 (549)
+|.++......+. .+++|++|++++|.++. ++.. +..+++|++|++++|.+++..|.. +. .+++|++|++++|
T Consensus 88 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~L~~n 164 (455)
T 3v47_A 88 YNQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL--NMRRFHVLDLTFN 164 (455)
T ss_dssp TCTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG--GCTTCCEEECTTC
T ss_pred CCccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC--CCCcccEEeCCCC
Confidence 9988777554443 68999999999999954 4443 888999999999999999877776 66 8999999999999
Q ss_pred cCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCc
Q 040238 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 237 (549)
.+.+..+..+ ......+++.|++++|.+.+..+.... ......+..+++|++|++++|.+.+..|.
T Consensus 165 ~l~~~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~-------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 165 KVKSICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLG-------------WEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp CBSCCCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTT-------------HHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred cccccChhhh-hccccccccccccccCcccccchhhcc-------------ccccccccccceeeeEecCCCcccccchh
Confidence 9988766532 223223488889988888754332110 00000112234444444444444444333
Q ss_pred chhcCC--CCCCeeecCCCccCCcCCCcccccCCCCccc--cCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc
Q 040238 238 CLGNSS--DELSVLDLQGNNFFGTIPNTFIKERRIPRSL--INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI 313 (549)
Q Consensus 238 ~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 313 (549)
.+.... ++|+.|++++|...+.......-....+..+ ...++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 310 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc
Confidence 333221 2445555554443321110000000000011 123577777887777777777777777777777777777
Q ss_pred cccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCc
Q 040238 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS 393 (549)
Q Consensus 314 l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 393 (549)
+.+..+..+ .++++|++|++++| .+++..+..|..+++|++|++++|+
T Consensus 311 l~~~~~~~~--~~l~~L~~L~Ls~N------------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 311 INKIDDNAF--WGLTHLLKLNLSQN------------------------------FLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp CCEECTTTT--TTCTTCCEEECCSS------------------------------CCCEECGGGGTTCTTCCEEECCSSC
T ss_pred ccccChhHh--cCcccCCEEECCCC------------------------------ccCCcChhHhcCcccCCEEECCCCc
Confidence 766654443 45555555555554 4555667788999999999999999
Q ss_pred cccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCC
Q 040238 394 LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQ 451 (549)
Q Consensus 394 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 451 (549)
+++..|..|..+++|+.|++++|++++..+..|..+++|++|++++|+++|.+|...+
T Consensus 359 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 359 IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 9988899999999999999999999987777889999999999999999999996533
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-40 Score=359.89 Aligned_cols=418 Identities=17% Similarity=0.166 Sum_probs=329.7
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEEeC-CCCcCccccCchhh---------------------------------
Q 040238 23 RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDL-AKNSYRGTIKLDVL--------------------------------- 68 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~--------------------------------- 68 (549)
.+++.|+|++|++.+.+|..|+++++|++|+| ++|.+.|..+....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 88887766332100
Q ss_pred ----------------cCCCCCCCeEeccC--CccceeeccCCCcCCCCCCEEEccCCCCCC------------------
Q 040238 69 ----------------LTSWKNLEFLALSL--NRLSVLTKATSNTTSQKLKYIGLRSCNLTK------------------ 112 (549)
Q Consensus 69 ----------------~~~l~~L~~L~Ls~--n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------ 112 (549)
......++.+.+.. |.++.++.. ...+++|++|++++|.++.
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~--l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA--IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG--GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHH--HhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 01112333344433 655555432 2378999999999999976
Q ss_pred CChhhc--CCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCc-CCC-CCCcccc----ccCCCCCccEEEccCC
Q 040238 113 FPNFLQ--NQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNF-LTG-FDQHLVV----LPANKGDLLTFDLSSN 184 (549)
Q Consensus 113 l~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~~~----~~~~~~~L~~L~L~~n 184 (549)
+|..+. ++++|++|++++|.+.+.+|..+. .+++|+.|++++|+ +++ ..+..+. .....++|+.|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHh--CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 999877 999999999999999999999998 99999999999998 775 2222111 1112234999999999
Q ss_pred cCCCCCCC-----CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 185 NLQGPLPV-----PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 185 ~l~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
.+. .+|. .+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+..+|++|++++|.++ .
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 999 7776 3889999999999999 777 8999999999999999999 888888777623999999999997 4
Q ss_pred CCCcccccCCCCccccCC--CCCcEEEccCCcCCCCcCccc---C--CCCCCCEEEccCcccccccCCCCCccCCCCCce
Q 040238 260 IPNTFIKERRIPRSLINC--SKLEFLGLGNNQISDTFPSWL---G--TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRI 332 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~--~~L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 332 (549)
+|.. +..+ ++|+.|++++|++.+.+|... . .+++|+.|++++|.+..+.... +..+++|+.
T Consensus 634 lp~~----------~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~--~~~l~~L~~ 701 (876)
T 4ecn_A 634 IPNI----------FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL--FATGSPIST 701 (876)
T ss_dssp CCSC----------CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH--HHTTCCCSE
T ss_pred Cchh----------hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHH--HccCCCCCE
Confidence 4433 3444 459999999999988665322 2 3458999999999998553322 257899999
Q ss_pred eeCCCCccccccChhhhhcccc-c-cccccceEEccCCcCcccCchhhc--CCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 333 IDLSNNIFIGTLPLKSFLCWNA-M-KIVNTTGIILSNNSFDSVIPASIA--NLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 333 L~ls~n~l~~~~~~~~~~~l~~-l-~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
|++++|++. .+|...+..... + ...+++.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 999999988 778766554320 0 0113499999999999 6777776 89999999999999996 78889999999
Q ss_pred CEeeCCC------CcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCC
Q 040238 409 ESLDLSN------NKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGL 466 (549)
Q Consensus 409 ~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~l 466 (549)
+.|+|++ |++.+.+|..+..+++|+.|++++|++ +.+|... .+.++.+.+.+|+..
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNI 840 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTC
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCC
Confidence 9999976 888889999999999999999999999 6777653 356677777777654
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=347.13 Aligned_cols=416 Identities=19% Similarity=0.201 Sum_probs=314.4
Q ss_pred CEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEc
Q 040238 26 EAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGL 105 (549)
Q Consensus 26 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l 105 (549)
++|++++|+++. +|..+. ++|++|++++|.+++..+.. |..+++|++|++++|+++.+....+. .+++|++|++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSD--ILSLSKLRILIISHNRIQYLDISVFK-FNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHH--HTTCTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEEC
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhh--ccccccccEEecCCCccCCcChHHhh-cccCCCEEec
Confidence 689999999995 455554 89999999999999665556 89999999999999999887654443 6899999999
Q ss_pred cCCCCCCCChhhcCCCCccEEEeecCcCCC-CCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCc--cEEEcc
Q 040238 106 RSCNLTKFPNFLQNQYHLLVLDLSDNRIQG-KVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDL--LTFDLS 182 (549)
Q Consensus 106 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L--~~L~L~ 182 (549)
++|.++.+|.. .+++|++|++++|.+++ ..|..+. .+++|++|++++|.+.... ...... | +.|+++
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l~~~~----~~~l~~--L~L~~L~l~ 146 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHLEKSS----VLPIAH--LNISKVLLV 146 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSCCGGG----GGGGTT--SCEEEEEEE
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhc--cCCcceEEEecCcccchhh----cccccc--ceeeEEEee
Confidence 99999999876 89999999999999987 4688898 9999999999999987622 122222 6 999999
Q ss_pred CCcC--CCCCCCCCCCcc----eeecccCCCCCcCch-hhhcCCCCCeEeCcCC--------------------------
Q 040238 183 SNNL--QGPLPVPPPGTI----HYLASNNSLTGEIPS-WICNLNILESLVLSHN-------------------------- 229 (549)
Q Consensus 183 ~n~l--~~~~~~~~~~L~----~L~l~~n~~~~~~~~-~l~~l~~L~~L~Ls~n-------------------------- 229 (549)
+|.+ .+..|..+..++ .+++++|.+.+.++. .+..+++|+.|++++|
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~ 226 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcc
Confidence 9999 777777776654 667788887765443 3344555555555554
Q ss_pred ----cCCCcCCcchhc--CCCCCCeeecCCCccCCcCCCccc-----ccC------------CCC-ccccCC---CCCcE
Q 040238 230 ----NLSGLLPQCLGN--SSDELSVLDLQGNNFFGTIPNTFI-----KER------------RIP-RSLINC---SKLEF 282 (549)
Q Consensus 230 ----~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~-----~~~------------~l~-~~l~~~---~~L~~ 282 (549)
.+.+..+..+.. ..++|++|++++|.+++.+|..+. ... .+| .++..+ ++|+.
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSE
T ss_pred ccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeE
Confidence 333221111110 012689999999999877776551 100 112 111111 45777
Q ss_pred EEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCcccc--ccChhhhhcccccccccc
Q 040238 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIG--TLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 283 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~l~~l~~~~l 360 (549)
|++++|.+.... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|++.+ .+| ..+..+++|
T Consensus 307 L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L----- 376 (520)
T 2z7x_B 307 FTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIA-EMTTQMKSL----- 376 (520)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTC-----
T ss_pred EEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccch-HHHhhCCCC-----
Confidence 777777665332 12678999999999999998766655 789999999999999875 222 446777777
Q ss_pred ceEEccCCcCcccCch-hhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 361 TGIILSNNSFDSVIPA-SIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+.|++++|.+++.+|. .|..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCC
Confidence 9999999999985554 588999999999999999887777654 79999999999999 7888788999999999999
Q ss_pred CcCcccCCC-CCCCCccCCCccCCCCCCCCCC
Q 040238 440 NHLTGLIPP-GKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 440 N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
|+++...+. ...+..++.+.+.+|++.|+|+
T Consensus 454 N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 454 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999954333 3445667777788888877654
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.2e-39 Score=344.41 Aligned_cols=450 Identities=19% Similarity=0.157 Sum_probs=308.1
Q ss_pred EECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCC
Q 040238 4 LYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLN 83 (549)
Q Consensus 4 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n 83 (549)
.+-++-+++ .+|..+. +++++|+|++|.|+++.+.+|.++++|++|+|++|+|++..+.. |.++++|++|+|++|
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~--f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTGN 110 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--TTTCTTCCEEECTTC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH--hcCCCCCCEEEccCC
Confidence 344555666 4555442 47999999999999999999999999999999999999655555 899999999999999
Q ss_pred ccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCC-CCcccccccCCCCcEEEccCCcCCC
Q 040238 84 RLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGK-VPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 84 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+++.++...+. .+++|++|++++|+++.+|. .++++++|++|++++|.++.. .|..+. .+++|++|++++|++.+
T Consensus 111 ~l~~l~~~~f~-~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~--~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 111 PIQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCCEECGGGGT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCSSCCCE
T ss_pred cCCCCCHHHhc-CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc--cchhhhhhcccCccccc
Confidence 99988776544 68999999999999988886 589999999999999999754 567777 89999999999999988
Q ss_pred CCCcccccc-CCCCCccEEEccCCcCCCCCCCCCC--CcceeecccCCCCC-----------------------------
Q 040238 162 FDQHLVVLP-ANKGDLLTFDLSSNNLQGPLPVPPP--GTIHYLASNNSLTG----------------------------- 209 (549)
Q Consensus 162 ~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~--~L~~L~l~~n~~~~----------------------------- 209 (549)
..+..+... ........++++.|.+....+.... .+..+++.+|....
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 765432211 1111144667777766544333211 12222222221110
Q ss_pred -----------------------------cCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcC
Q 040238 210 -----------------------------EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260 (549)
Q Consensus 210 -----------------------------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 260 (549)
.....+..+.+++.+++.++.+....+ +. ....++.|++.+|.+.+..
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FS-YNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GG-SCCCCSEEEEESCEESSCC
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cc-cchhhhhhhcccccccCcC
Confidence 011112223334444444443332111 11 1124556666665554433
Q ss_pred CCccccc---------CCCCccccCCCCCcEEEccCCcCCCC--c-----------------------CcccCCCCCCCE
Q 040238 261 PNTFIKE---------RRIPRSLINCSKLEFLGLGNNQISDT--F-----------------------PSWLGTLPNLNV 306 (549)
Q Consensus 261 ~~~~~~~---------~~l~~~l~~~~~L~~L~l~~n~l~~~--~-----------------------~~~~~~l~~L~~ 306 (549)
+..+... ...+.....+++|+.|++++|.+... . +..+..+++|+.
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEH 424 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCE
T ss_pred cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccc
Confidence 3222110 00111223456666666666655321 1 223445556666
Q ss_pred EEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcC-cccCchhhcCCCCCC
Q 040238 307 LILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSF-DSVIPASIANLKGLQ 385 (549)
Q Consensus 307 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~ 385 (549)
+++.++......+. ..+..+.+++.++++.|.+.+..+ ..+..++.+ +.|++++|.+ .+..|..|..+++|+
T Consensus 425 l~l~~~~~~~~~~~-~~~~~l~~l~~l~ls~n~l~~~~~-~~~~~~~~L-----~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 425 LDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSL-----EVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp EECTTSEEESTTSS-CTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTC-----CEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred hhhhhccccccccc-cccccccccccccccccccccccc-cccccchhh-----hhhhhhhcccccccCchhhhhccccC
Confidence 66665555443322 223567777777777777664443 446666666 8999999975 456788899999999
Q ss_pred EEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCC-CC-CccCCCccCCC
Q 040238 386 VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGK-QF-ATFDNTSFDSN 463 (549)
Q Consensus 386 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~-~~~~~~~~~~n 463 (549)
+|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..|... .+ ..++.+.+.+|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 99999999999899999999999999999999998889999999999999999999999887642 22 46777888999
Q ss_pred CCCCCCCC
Q 040238 464 SGLCGRPL 471 (549)
Q Consensus 464 ~~lc~~~~ 471 (549)
|+.|+|.+
T Consensus 578 p~~C~C~~ 585 (635)
T 4g8a_A 578 DFACTCEH 585 (635)
T ss_dssp CBCCSGGG
T ss_pred CCcccCCc
Confidence 98887753
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.7e-39 Score=325.38 Aligned_cols=371 Identities=25% Similarity=0.260 Sum_probs=266.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCC-------------CEEeCCCCcCccccCchh
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQL-------------FFLDLAKNSYRGTIKLDV 67 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~~~~~~ 67 (549)
|++|++++|.+ +.+|++|+++++|++|++++|.+.+..|..++++.+| ++|++++|.+++ +|..
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~- 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC-
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC-
Confidence 68899999999 7899999999999999999999999999999998864 999999999984 3422
Q ss_pred hcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCC
Q 040238 68 LLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQ 147 (549)
Q Consensus 68 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 147 (549)
.++|++|++++|.++.++.. +.+|++|++++|.++.+|.. .++|++|++++|.+++ +| .+. .++
T Consensus 90 ----~~~L~~L~l~~n~l~~lp~~-----~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~--~l~ 153 (454)
T 1jl5_A 90 ----PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP-ELQ--NSS 153 (454)
T ss_dssp ----CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC-CCT--TCT
T ss_pred ----cCCCCEEEccCCcCCccccc-----cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc-ccC--CCC
Confidence 37899999999988876542 47899999999999877753 2689999999999985 66 477 899
Q ss_pred CCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC--CCCCcceeecccCCCCCcCchhhhcCCCCCeEe
Q 040238 148 NLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV--PPPGTIHYLASNNSLTGEIPSWICNLNILESLV 225 (549)
Q Consensus 148 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 225 (549)
+|++|++++|++.+++... ++|++|++++|.+.+ +|. .+++|++|++++|.+.+ +|.. .++|++|+
T Consensus 154 ~L~~L~l~~N~l~~lp~~~-------~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDLP-------PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp TCCEEECCSSCCSCCCCCC-------TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCEEECCCCcCcccCCCc-------ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 9999999999998755431 249999999999987 343 28899999999999986 3332 35899999
Q ss_pred CcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCC
Q 040238 226 LSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLN 305 (549)
Q Consensus 226 Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 305 (549)
+++|.+. .+|. +.. .++|++|++++|++++. |. .+++|++|++++|++++ +|.. .++|+
T Consensus 222 l~~n~l~-~lp~-~~~-l~~L~~L~l~~N~l~~l-----------~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~ 280 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQN-LPFLTTIYADNNLLKTL-----------PD---LPPSLEALNVRDNYLTD-LPEL---PQSLT 280 (454)
T ss_dssp CCSSCCS-SCCC-CTT-CTTCCEEECCSSCCSSC-----------CS---CCTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred CcCCcCC-cccc-cCC-CCCCCEEECCCCcCCcc-----------cc---cccccCEEECCCCcccc-cCcc---cCcCC
Confidence 9999998 6774 554 44899999999998752 21 24789999999999986 4432 47899
Q ss_pred EEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCC
Q 040238 306 VLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQ 385 (549)
Q Consensus 306 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 385 (549)
+|++++|.+.+... -.++|+.|++++|++.+ ++ .+. .+++.|++++|.+++ +|.. +++|+
T Consensus 281 ~L~ls~N~l~~l~~------~~~~L~~L~l~~N~l~~-i~-----~~~----~~L~~L~Ls~N~l~~-lp~~---~~~L~ 340 (454)
T 1jl5_A 281 FLDVSENIFSGLSE------LPPNLYYLNASSNEIRS-LC-----DLP----PSLEELNVSNNKLIE-LPAL---PPRLE 340 (454)
T ss_dssp EEECCSSCCSEESC------CCTTCCEEECCSSCCSE-EC-----CCC----TTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred EEECcCCccCcccC------cCCcCCEEECcCCcCCc-cc-----CCc----CcCCEEECCCCcccc-cccc---CCcCC
Confidence 99999999987532 13689999999999875 22 111 134999999999997 4543 58999
Q ss_pred EEEccCCccccCCCcccCCCCCCCEeeCCCCcccc--cCCcCccCC-------------CCCcEEecccCcCcc--cCC
Q 040238 386 VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG--QIPQQLVEL-------------TFLEFFNVSDNHLTG--LIP 447 (549)
Q Consensus 386 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~N~l~~--~~p 447 (549)
+|++++|+++ .+|. .+++|+.|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|
T Consensus 341 ~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 9999999999 5666 47899999999999998 788888877 889999999999997 555
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.7e-38 Score=330.45 Aligned_cols=423 Identities=20% Similarity=0.191 Sum_probs=318.4
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.+...+++++++|++++ +|..+. ++|++|++++|.+++..+.. |.++++|++|++++|.++.+....+. .+++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 102 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPD--ISFLSELRVLRLSHNRIRSLDFHVFL-FNQDL 102 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGG--TTTCTTCCEEECCSCCCCEECTTTTT-TCTTC
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhh--hccCCCccEEECCCCCCCcCCHHHhC-CCCCC
Confidence 34556999999999996 454443 89999999999999666666 89999999999999999887665444 68999
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCC-CCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGK-VPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
++|++++|.++.+|.. .+++|++|++++|.+++. .|..+. .+++|++|++++|.+...... ....-+|+.|
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~--~l~~L~~L~L~~n~l~~~~~~----~l~~L~L~~L 174 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFG--NLTKLTFLGLSAAKFRQLDLL----PVAHLHLSCI 174 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGG--GCTTCCEEEEECSBCCTTTTG----GGTTSCEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhc--ccCcccEEecCCCccccCchh----hhhhceeeEE
Confidence 9999999999999977 899999999999999863 467888 999999999999998763222 1222025999
Q ss_pred EccCCcC--CCCCCCCCCCcc----eeecccCCCCCcCch-hhhcCCCCCeEeCcCCc----------------------
Q 040238 180 DLSSNNL--QGPLPVPPPGTI----HYLASNNSLTGEIPS-WICNLNILESLVLSHNN---------------------- 230 (549)
Q Consensus 180 ~L~~n~l--~~~~~~~~~~L~----~L~l~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~---------------------- 230 (549)
++++|.+ .+..|..+..+. .+++++|.+.+.++. .+..+++|+.+++++|.
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 9999999 777777655543 567788887765543 33456666666666653
Q ss_pred ------CCCc----CCcchhcCCCCCCeeecCCCccCCcCCCcccc-----cC------------CCC-cccc---CCCC
Q 040238 231 ------LSGL----LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK-----ER------------RIP-RSLI---NCSK 279 (549)
Q Consensus 231 ------l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----~~------------~l~-~~l~---~~~~ 279 (549)
+.+. ++..+. .++|++|++++|.+++.+|..+.. .. .+| .++. ...+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 2211 111111 127999999999999887765521 00 111 1111 1246
Q ss_pred CcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccC-hhhhhcccccccc
Q 040238 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP-LKSFLCWNAMKIV 358 (549)
Q Consensus 280 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~l~~l~~~ 358 (549)
|++|++++|.+.... ....+++|++|++++|.+.+..+..+ ..+++|+.|++++|++.+.-+ +..+..++++
T Consensus 333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L--- 405 (562)
T 3a79_B 333 IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSL--- 405 (562)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC---
T ss_pred ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCC---
Confidence 888999998876432 12678999999999999998766655 889999999999999875221 2346677777
Q ss_pred ccceEEccCCcCcccCc-hhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 359 NTTGIILSNNSFDSVIP-ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 359 ~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+.|++++|.+++.+| ..|..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 406 --~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 406 --ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp --CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred --CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 999999999998444 5689999999999999999877666554 79999999999999 67777779999999999
Q ss_pred ccCcCcccCCC-CCCCCccCCCccCCCCCCCCCCC
Q 040238 438 SDNHLTGLIPP-GKQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 438 ~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
++|+++...+. ...++.++.+.+.+|++.|+|+.
T Consensus 481 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 99999954443 34566777788899988887653
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.9e-38 Score=320.52 Aligned_cols=382 Identities=18% Similarity=0.189 Sum_probs=255.8
Q ss_pred CCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccc-eeeccCCCcCCCCCCEE
Q 040238 25 LEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLS-VLTKATSNTTSQKLKYI 103 (549)
Q Consensus 25 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L 103 (549)
-+.++.+++++... |. + .++|++|++++|.+++..+.. |.++++|++|++++|.+. .++...+ ..+++|++|
T Consensus 12 ~~~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l~~L~~L 84 (455)
T 3v47_A 12 GYNAICINRGLHQV-PE-L--PAHVNYVDLSLNSIAELNETS--FSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIIL 84 (455)
T ss_dssp TTEEECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEECTTT--TSSCTTCCEEECCCCSTTCEECTTTT-TTCTTCCEE
T ss_pred ccccCcCCCCcccC-CC-C--CCccCEEEecCCccCcCChhH--hccCccccEEECcCCcccceECcccc-cccccCCEE
Confidence 35677777777644 33 2 268899999999888666666 888888999999888765 3333222 257777777
Q ss_pred EccCCCCCCC-ChhhcCCCCccEEEeecCcCCCCCCcc--cccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 104 GLRSCNLTKF-PNFLQNQYHLLVLDLSDNRIQGKVPKW--LLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 104 ~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
++++|.++.+ |..+..+++|++|++++|.+++..+.. +. .+++|++|++++|.+.+..+..
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~-------------- 148 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK--PLTSLEMLVLRDNNIKKIQPAS-------------- 148 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT--TCTTCCEEECCSSBCCSCCCCG--------------
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccccc--CcccCCEEECCCCccCccCccc--------------
Confidence 7777777554 556777777777777777776533333 54 5666777776666665543331
Q ss_pred ccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCC-CCCCeeecCCCccCCc
Q 040238 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSS-DELSVLDLQGNNFFGT 259 (549)
Q Consensus 181 L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~~L~~L~L~~n~l~~~ 259 (549)
.+..+++|++|++++|.+.+..+..+.... ++|+.|++++|.+.+.
T Consensus 149 ---------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 149 ---------------------------------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp ---------------------------------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred ---------------------------------ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 134444555555555555444444333321 2455555555555443
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC---CCCCCEEEccCcccccc----------cCCCCCccC
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT---LPNLNVLILRSNIFYGI----------IKEPRTDCG 326 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~----------~~~~~~~~~ 326 (549)
.+..+.. .....+..+++|++|++++|++.+..+..+.. .++|+.|++++|...+. ....+....
T Consensus 196 ~~~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 196 NEYWLGW--EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp STTCTTH--HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGT
T ss_pred chhhccc--cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccc
Confidence 3222100 00011223455666666666655544444332 25566666665543322 111221123
Q ss_pred CCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCC
Q 040238 327 FSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP 406 (549)
Q Consensus 327 l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 406 (549)
.++|+.|++++|++.+..| ..+..+++| +.|++++|.+++..|..|..+++|++|++++|.+.+..|..|..++
T Consensus 274 ~~~L~~L~l~~n~l~~~~~-~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLK-SVFSHFTDL-----EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TSCCCEEECCSSCCCEECT-TTTTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccCceEEEecCccccccch-hhcccCCCC-----CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 4689999999999876555 447777777 9999999999999899999999999999999999988889999999
Q ss_pred CCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCC
Q 040238 407 NLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 407 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+|++|++++|++++..|..|..+++|++|++++|++++..+.. ..++.++.+.+.+|++.|++|
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999888999999999999999999999765543 456777888888988888776
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-36 Score=308.18 Aligned_cols=347 Identities=27% Similarity=0.358 Sum_probs=263.8
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.++++++|+++++.+... | .+..+++|++|++++|.+++..+ +..+++|++|++++|.+..++. ...+++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITP---LANLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh----hhccccCCEEECCCCccccChh---hcCCCCC
Confidence 467889999999888754 3 47888999999999998885433 6888999999999998777665 2368899
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
++|++++|.++.++. +..+++|++|++++|.+.+ .+ .+. .+++|+.|+++ +.+....+ .... ++|+.|+
T Consensus 115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~--~l~~L~~L~l~-~~~~~~~~---~~~l--~~L~~L~ 183 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALS--GLTSLQQLSFG-NQVTDLKP---LANL--TTLERLD 183 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGT--TCTTCSEEEEE-ESCCCCGG---GTTC--TTCCEEE
T ss_pred CEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhc--cCCcccEeecC-CcccCchh---hccC--CCCCEEE
Confidence 999999998888765 8888999999999998874 33 355 88999999986 44443322 1222 2366666
Q ss_pred ccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcC
Q 040238 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260 (549)
Q Consensus 181 L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 260 (549)
+++|.+.+ + ..+..+++|++|++++|.+.+..| +.. .++|++|++++|.+++.
T Consensus 184 l~~n~l~~----------------------~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~- 236 (466)
T 1o6v_A 184 ISSNKVSD----------------------I-SVLAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNGNQLKDI- 236 (466)
T ss_dssp CCSSCCCC----------------------C-GGGGGCTTCSEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC-
T ss_pred CcCCcCCC----------------------C-hhhccCCCCCEEEecCCccccccc--ccc-cCCCCEEECCCCCcccc-
Confidence 66665542 1 236777888888888888775544 333 34788888888877642
Q ss_pred CCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCcc
Q 040238 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIF 340 (549)
Q Consensus 261 ~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l 340 (549)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++
T Consensus 237 -----------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 237 -----------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQL 299 (466)
T ss_dssp -----------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCC
T ss_pred -----------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcc
Confidence 134677888888888888876544 7788888888888888877644 36788888888888887
Q ss_pred ccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccc
Q 040238 341 IGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420 (549)
Q Consensus 341 ~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 420 (549)
.+..+ +..+++| +.|++++|.+++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++
T Consensus 300 ~~~~~---~~~l~~L-----~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 300 EDISP---ISNLKNL-----TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp SCCGG---GGGCTTC-----SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCchh---hcCCCCC-----CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 75433 5555555 888889998887665 78899999999999999854 468899999999999999998
Q ss_pred cCCcCccCCCCCcEEecccCcCccc
Q 040238 421 QIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
..| +..+++|+.|++++|++++.
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEECC
T ss_pred cch--hhcCCCCCEEeccCCcccCC
Confidence 776 88999999999999999874
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.5e-37 Score=311.75 Aligned_cols=368 Identities=24% Similarity=0.312 Sum_probs=269.9
Q ss_pred CcEEECCCCCCCCcccccccCCCCC-------------CEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchh
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSL-------------EAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDV 67 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 67 (549)
|++|++++|.+++.+|..++++++| ++|++++|.+++.. . -.++|++|++++|.+++ +|..
T Consensus 36 L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp-~---~~~~L~~L~l~~n~l~~-lp~~- 109 (454)
T 1jl5_A 36 KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP-E---LPPHLESLVASCNSLTE-LPEL- 109 (454)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCSS-CCCC-
T ss_pred hhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC-C---CcCCCCEEEccCCcCCc-cccc-
Confidence 4678899999999999999998865 99999999998643 3 24789999999999995 5533
Q ss_pred hcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCC
Q 040238 68 LLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQ 147 (549)
Q Consensus 68 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 147 (549)
.++|++|++++|.++.++..+ ++|++|++++|.++.+| .+..+++|++|++++|++++ +|. ..+
T Consensus 110 ----~~~L~~L~l~~n~l~~l~~~~-----~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~-----~~~ 173 (454)
T 1jl5_A 110 ----PQSLKSLLVDNNNLKALSDLP-----PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPD-----LPP 173 (454)
T ss_dssp ----CTTCCEEECCSSCCSCCCSCC-----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCC-----CCT
T ss_pred ----cCCCcEEECCCCccCcccCCC-----CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCC-----Ccc
Confidence 379999999999888765532 68999999999998899 59999999999999999984 554 345
Q ss_pred CCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCc
Q 040238 148 NLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLS 227 (549)
Q Consensus 148 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls 227 (549)
+|++|++++|++.+.+ . .... ++|+.|++++|.+.+ +|...++|++|++++|.+. .+|. +..+++|++|+++
T Consensus 174 ~L~~L~L~~n~l~~l~-~--~~~l--~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP-E--LQNL--PFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCSSCC-C--CTTC--TTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred cccEEECcCCcCCcCc-c--ccCC--CCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECC
Confidence 8999999999998864 2 2333 349999999999986 5666789999999999998 5664 8899999999999
Q ss_pred CCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEE
Q 040238 228 HNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVL 307 (549)
Q Consensus 228 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 307 (549)
+|.+.+ +|.. .++|++|++++|.+++. |. .+++|++|++++|++++. +. ..++|++|
T Consensus 246 ~N~l~~-l~~~----~~~L~~L~l~~N~l~~l-----------~~---~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L 302 (454)
T 1jl5_A 246 NNLLKT-LPDL----PPSLEALNVRDNYLTDL-----------PE---LPQSLTFLDVSENIFSGL-SE---LPPNLYYL 302 (454)
T ss_dssp SSCCSS-CCSC----CTTCCEEECCSSCCSCC-----------CC---CCTTCCEEECCSSCCSEE-SC---CCTTCCEE
T ss_pred CCcCCc-cccc----ccccCEEECCCCccccc-----------Cc---ccCcCCEEECcCCccCcc-cC---cCCcCCEE
Confidence 999984 5543 35899999999999752 22 237899999999999863 21 12689999
Q ss_pred EccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEE
Q 040238 308 ILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVL 387 (549)
Q Consensus 308 ~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L 387 (549)
++++|.+.++.. ..++|+.|++++|++.+ +|.. ++++ +.|++++|.+++ +|. .+++|++|
T Consensus 303 ~l~~N~l~~i~~------~~~~L~~L~Ls~N~l~~-lp~~----~~~L-----~~L~L~~N~l~~-lp~---~l~~L~~L 362 (454)
T 1jl5_A 303 NASSNEIRSLCD------LPPSLEELNVSNNKLIE-LPAL----PPRL-----ERLIASFNHLAE-VPE---LPQNLKQL 362 (454)
T ss_dssp ECCSSCCSEECC------CCTTCCEEECCSSCCSC-CCCC----CTTC-----CEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred ECcCCcCCcccC------CcCcCCEEECCCCcccc-cccc----CCcC-----CEEECCCCcccc-ccc---hhhhccEE
Confidence 999999987521 12589999999999885 5532 3344 999999999995 454 47899999
Q ss_pred EccCCcccc--CCCcccCCC-------------CCCCEeeCCCCcccc--cCCcCccCCCCCcEEecccCcCcccCC
Q 040238 388 NLQNNSLQG--HIPSCLGNL-------------PNLESLDLSNNKFSG--QIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 388 ~l~~n~l~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
++++|++++ .+|..++.+ ++|+.|++++|++++ .+|. +++.|.+.+|.+.+..|
T Consensus 363 ~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYE 433 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------------
T ss_pred ECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccc
Confidence 999999998 678888877 899999999999997 5554 46777888998887665
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.2e-36 Score=303.76 Aligned_cols=353 Identities=20% Similarity=0.163 Sum_probs=248.0
Q ss_pred CCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeecc
Q 040238 12 SGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKA 91 (549)
Q Consensus 12 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 91 (549)
.+..+..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+++. . +..+++|++|++++|.++.++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC--
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee--
Confidence 344455677888888888888888865 4 578888888888888888753 3 678888888888888777653
Q ss_pred CCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccC
Q 040238 92 TSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPA 171 (549)
Q Consensus 92 ~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 171 (549)
...+++|++|++++|.++.+| +..+++|++|++++|++++. + +. .+++|++|++++|...+..+ ....
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-~--l~--~l~~L~~L~l~~n~~~~~~~---~~~l 169 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-D--VS--HNTQLTELDCHLNKKITKLD---VTPQ 169 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-C--CT--TCTTCCEEECTTCSCCCCCC---CTTC
T ss_pred --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee-c--cc--cCCcCCEEECCCCCcccccc---cccC
Confidence 226788888888888887775 77888888888888888753 2 44 78888888888885433221 1222
Q ss_pred CCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeec
Q 040238 172 NKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDL 251 (549)
Q Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 251 (549)
++|+.|++++|.+++.....+++|+.|++++|.+.+. .+..+++|++|++++|.+++ +| +... ++|++|++
T Consensus 170 --~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l-~~L~~L~l 240 (457)
T 3bz5_A 170 --TQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPL-TQLTYFDC 240 (457)
T ss_dssp --TTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTC-TTCSEEEC
T ss_pred --CcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cccc-CCCCEEEe
Confidence 3488888888888875444478888888888888865 37788999999999999886 55 4443 48999999
Q ss_pred CCCccCCcCCCcccccCCCCccccCCCCCcEEEccCC----------cCCCCcCcccCCCCCCCEEEccCcccccccCCC
Q 040238 252 QGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN----------QISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321 (549)
Q Consensus 252 ~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 321 (549)
++|.+++..+ ..+++|+.|++++| .+.+.+| ++.+++|+.|++++|...+..+.
T Consensus 241 ~~N~l~~~~~-------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~- 304 (457)
T 3bz5_A 241 SVNPLTELDV-------------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC- 304 (457)
T ss_dssp CSSCCSCCCC-------------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-
T ss_pred eCCcCCCcCH-------------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-
Confidence 9998886532 33455555555544 3333332 23445555555555544433321
Q ss_pred CCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcc
Q 040238 322 RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSC 401 (549)
Q Consensus 322 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 401 (549)
...+|+.|++++|. +++.|++++|.+++. + +..+++|++|++++|++++
T Consensus 305 ----~~~~L~~L~l~~~~-------------------~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~----- 353 (457)
T 3bz5_A 305 ----QAAGITELDLSQNP-------------------KLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD----- 353 (457)
T ss_dssp ----TTCCCSCCCCTTCT-------------------TCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-----
T ss_pred ----CCCcceEechhhcc-------------------cCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-----
Confidence 22344444444431 237888888888874 2 7788888888888888874
Q ss_pred cCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC
Q 040238 402 LGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449 (549)
Q Consensus 402 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 449 (549)
++.|+.|++++|.+.+. ..+..|+.+++++|+++|.+|..
T Consensus 354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 25677778888888765 24456788999999999999854
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=309.82 Aligned_cols=347 Identities=17% Similarity=0.141 Sum_probs=265.2
Q ss_pred CeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCC-hhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEc
Q 040238 76 EFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFP-NFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNI 154 (549)
Q Consensus 76 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L 154 (549)
+.++.+++.++.++... ..++++|++++|.++.++ ..+..+++|++|++++|.+++..|..|. .+++|++|++
T Consensus 14 ~~v~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN--NLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEC
T ss_pred CEEEeCCCCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh--CCccCCEEEC
Confidence 46777777666665432 356788888888876664 4677778888888888877766677776 7778888888
Q ss_pred cCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCc
Q 040238 155 SHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234 (549)
Q Consensus 155 ~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 234 (549)
++|++..++...+ .. +++|++|++++|.+.+..+..|..+++|++|++++|.+.+.
T Consensus 88 ~~n~l~~~~~~~~-~~-----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 88 RSNRLKLIPLGVF-TG-----------------------LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp CSSCCCSCCTTSS-TT-----------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred CCCcCCccCcccc-cC-----------------------CCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 7777776554421 11 23444444555555556667788888888888888888866
Q ss_pred CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccc
Q 040238 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF 314 (549)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 314 (549)
.+..+..+. +|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|..
T Consensus 144 ~~~~~~~l~-~L~~L~l~~n~l~~~~~----------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 144 SHRAFSGLN-SLEQLTLEKCNLTSIPT----------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CTTSSTTCT-TCCEEEEESCCCSSCCH----------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ChhhccCCC-CCCEEECCCCcCcccCh----------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 666666554 78899998888875432 2357788999999999998887777888899999999999887
Q ss_pred ccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCcc
Q 040238 315 YGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSL 394 (549)
Q Consensus 315 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 394 (549)
.+..+... ....+|+.|++++|++. .+|...+..+++| +.|++++|.+++..+..|..+++|++|++++|++
T Consensus 213 ~~~~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 213 LDTMTPNC--LYGLNLTSLSITHCNLT-AVPYLAVRHLVYL-----RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp CCEECTTT--TTTCCCSEEEEESSCCC-SCCHHHHTTCTTC-----CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred ccccCccc--ccCccccEEECcCCccc-ccCHHHhcCcccc-----CeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 66655444 34558999999999877 6777778888877 9999999999998888999999999999999999
Q ss_pred ccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCCC
Q 040238 395 QGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 395 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
.+..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++....+.......+.++...|..|.
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 98889999999999999999999998777788999999999999999999876433333333455666666776553
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-35 Score=301.30 Aligned_cols=320 Identities=19% Similarity=0.204 Sum_probs=200.0
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.++.+++.++ .+|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+++..+.. |.++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA--FNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh--hhCCccCCEEECC
Confidence 35667777776 4454443 57888888888888777778888888888888888887666665 7788888888888
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCC-ChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKF-PNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~ 160 (549)
+|.++.++...+. .+++|++|++++|.++.+ +..+..+++|++|++++|.+.+..+..|. .+++|++|++++|++.
T Consensus 89 ~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 89 SNRLKLIPLGVFT-GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS--GLNSLEQLTLEKCNLT 165 (477)
T ss_dssp SSCCCSCCTTSST-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSST--TCTTCCEEEEESCCCS
T ss_pred CCcCCccCccccc-CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhcc--CCCCCCEEECCCCcCc
Confidence 8877666544332 466777777777776444 34566666777777777766655555555 5666666666665544
Q ss_pred CCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchh
Q 040238 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 240 (549)
.. .+..+..+++|+.|++++|.+.+..+..+.
T Consensus 166 ~~------------------------------------------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~ 197 (477)
T 2id5_A 166 SI------------------------------------------------PTEALSHLHGLIVLRLRHLNINAIRDYSFK 197 (477)
T ss_dssp SC------------------------------------------------CHHHHTTCTTCCEEEEESCCCCEECTTCSC
T ss_pred cc------------------------------------------------ChhHhcccCCCcEEeCCCCcCcEeChhhcc
Confidence 32 233455666666666666666644443443
Q ss_pred cCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCC
Q 040238 241 NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320 (549)
Q Consensus 241 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 320 (549)
.. ++|++|++++|...+.++.. .....+|++|++++|++++..+..+..+++|+.|++++|.+.+..+.
T Consensus 198 ~l-~~L~~L~l~~~~~~~~~~~~----------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 198 RL-YRLKVLEISHWPYLDTMTPN----------CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp SC-TTCCEEEEECCTTCCEECTT----------TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cC-cccceeeCCCCccccccCcc----------cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 33 35666666666554433322 22334677777777777655445666777777777777776665444
Q ss_pred CCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCc
Q 040238 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS 400 (549)
Q Consensus 321 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 400 (549)
.+ ..+++|+.|++++|++. +..+..|..+++|++|++++|++++..+.
T Consensus 267 ~~--~~l~~L~~L~L~~n~l~------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 267 ML--HELLRLQEIQLVGGQLA------------------------------VVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp SC--TTCTTCCEEECCSSCCS------------------------------EECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred hc--cccccCCEEECCCCccc------------------------------eECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 33 45555555555555443 34444555666666666666666655555
Q ss_pred ccCCCCCCCEeeCCCCcccc
Q 040238 401 CLGNLPNLESLDLSNNKFSG 420 (549)
Q Consensus 401 ~~~~l~~L~~L~l~~n~l~~ 420 (549)
.|..+++|+.|++++|++..
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp GBSCGGGCCEEECCSSCEEC
T ss_pred HcCCCcccCEEEccCCCccC
Confidence 56666666666666666653
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-34 Score=290.14 Aligned_cols=335 Identities=21% Similarity=0.226 Sum_probs=209.0
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.++++++|++++|.+....+..|.++++|++|++++|.+++..+.. |..+++|++|++++|.++.++...+. .+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCCCCTTTTT-TCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh--ccCCCCcCEEECCCCCCCcCCHHHhc-CCCCC
Confidence 4578888888888888777677788888888888888887555545 78888888888888877766554333 57778
Q ss_pred CEEEccCCCCCCCChh-hcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 101 KYIGLRSCNLTKFPNF-LQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
++|++++|.++.+|.. +..+++|++|++++|.+++..+..+. .+++|++|++++|++....
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~---------------- 181 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVD---------------- 181 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS--SCTTCCEEECCSSCCSBCC----------------
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc--CCCCCCEEECCCCcCCccc----------------
Confidence 8888888888777764 46777888888888877766666666 6777777777777665432
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
+..+++|+.|++++|.+.+. ..+++|++|++++|.+...
T Consensus 182 -----------------------------------~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 182 -----------------------------------LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVV 220 (390)
T ss_dssp -----------------------------------GGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEE
T ss_pred -----------------------------------cccccccceeeccccccccc------CCCCcceEEECCCCeeeec
Confidence 12233344444444433311 0111344445544444322
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
.. ..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|+
T Consensus 221 ~~-------------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 221 RG-------------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNR 283 (390)
T ss_dssp EC-------------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECCSSC
T ss_pred cc-------------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc--cccccCCEEECCCCc
Confidence 11 1123455555555555432 234445555555555555444433322 344444444444444
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+. + ++..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++
T Consensus 284 l~------------------------------~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 284 LV------------------------------A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp CC------------------------------E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred Cc------------------------------c-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 32 1 2233455678888888888887 56666777888888888888887
Q ss_pred ccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 420 GQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
.. + +..+++|+.|++++|++.|.+.. ..+..+....+.+++..|..+
T Consensus 332 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 332 TL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred ee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 44 3 66778899999999998876432 234445555566666666643
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-33 Score=289.90 Aligned_cols=345 Identities=24% Similarity=0.309 Sum_probs=263.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
|+.|+++++.++. ++ .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|++|++
T Consensus 48 l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L 119 (466)
T 1o6v_A 48 VTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTL 119 (466)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred ccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh----hcCCCCCCEEEC
Confidence 6899999999985 44 48899999999999999997765 9999999999999999985443 789999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~ 160 (549)
++|.++.++. ...+++|++|++++|.+..++ .+..+++|++|++++ .+.+.. .+. .+++|+.|++++|.+.
T Consensus 120 ~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~--~~~--~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 120 FNNQITDIDP---LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK--PLA--NLTTLERLDISSNKVS 190 (466)
T ss_dssp CSSCCCCCGG---GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG--GGT--TCTTCCEEECCSSCCC
T ss_pred CCCCCCCChH---HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch--hhc--cCCCCCEEECcCCcCC
Confidence 9998887765 237899999999999998886 488999999999974 454332 266 8999999999999988
Q ss_pred CCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchh
Q 040238 161 GFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLG 240 (549)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 240 (549)
.... .... ++|++|++++|.+.+. .+ +..+++|++|++++|.+.+. + .+.
T Consensus 191 ~~~~---l~~l--~~L~~L~l~~n~l~~~---------------------~~--~~~l~~L~~L~l~~n~l~~~-~-~l~ 240 (466)
T 1o6v_A 191 DISV---LAKL--TNLESLIATNNQISDI---------------------TP--LGILTNLDELSLNGNQLKDI-G-TLA 240 (466)
T ss_dssp CCGG---GGGC--TTCSEEECCSSCCCCC---------------------GG--GGGCTTCCEEECCSSCCCCC-G-GGG
T ss_pred CChh---hccC--CCCCEEEecCCccccc---------------------cc--ccccCCCCEEECCCCCcccc-h-hhh
Confidence 7532 2222 2377777777666532 22 55667777777777777632 2 233
Q ss_pred cCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCC
Q 040238 241 NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKE 320 (549)
Q Consensus 241 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 320 (549)
.+ ++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+
T Consensus 241 ~l-~~L~~L~l~~n~l~~~~~------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 241 SL-TNLTDLDLANNQISNLAP------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304 (466)
T ss_dssp GC-TTCSEEECCSSCCCCCGG------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-
T ss_pred cC-CCCCEEECCCCccccchh------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-
Confidence 33 367777777777764322 4567778888888887775443 6777788888888887776543
Q ss_pred CCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCc
Q 040238 321 PRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPS 400 (549)
Q Consensus 321 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 400 (549)
+..+++|+.|++++|++.+..| +..++.| +.|++++|.+++. ..+..+++|++|++++|++++..|
T Consensus 305 ---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L-----~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 370 (466)
T 1o6v_A 305 ---ISNLKNLTYLTLYFNNISDISP---VSSLTKL-----QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP- 370 (466)
T ss_dssp ---GGGCTTCSEEECCSSCCSCCGG---GGGCTTC-----CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-
T ss_pred ---hcCCCCCCEEECcCCcCCCchh---hccCccC-----CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-
Confidence 3667788888888887776544 4455555 8888888888765 468899999999999999997766
Q ss_pred ccCCCCCCCEeeCCCCcccccCCc
Q 040238 401 CLGNLPNLESLDLSNNKFSGQIPQ 424 (549)
Q Consensus 401 ~~~~l~~L~~L~l~~n~l~~~~~~ 424 (549)
+..+++|+.|++++|++++ .|.
T Consensus 371 -~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 371 -LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp -GTTCTTCCEEECCCEEEEC-CCB
T ss_pred -hhcCCCCCEEeccCCcccC-Cch
Confidence 8899999999999999985 343
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.3e-33 Score=284.20 Aligned_cols=337 Identities=20% Similarity=0.215 Sum_probs=258.4
Q ss_pred EEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccC
Q 040238 28 IHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRS 107 (549)
Q Consensus 28 L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 107 (549)
.....+......+..++++++|++|++++|.+++. | . +..+++|++|++++|.++.++ ...+++|++|++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~--l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~ 94 (457)
T 3bz5_A 23 EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-G--IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDS 94 (457)
T ss_dssp HHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-T--GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCS
T ss_pred HHHHhcCcCcccccChhHcCCCCEEEccCCCcccC-h-h--hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcC
Confidence 33334445555566788999999999999999954 4 4 789999999999999888863 23689999999999
Q ss_pred CCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCC
Q 040238 108 CNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQ 187 (549)
Q Consensus 108 n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 187 (549)
|.++.++ +..+++|++|++++|.+++ ++ +. .+++|++|++++|++++++ .... ++|+.|++++|...
T Consensus 95 N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~--~~--~l~~L~~L~l~~N~l~~l~----l~~l--~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 95 NKLTNLD--VTPLTKLTYLNCDTNKLTK-LD--VS--QNPLLTYLNCARNTLTEID----VSHN--TQLTELDCHLNKKI 161 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECCSSCCSC-CC--CT--TCTTCCEEECTTSCCSCCC----CTTC--TTCCEEECTTCSCC
T ss_pred CCCceee--cCCCCcCCEEECCCCcCCe-ec--CC--CCCcCCEEECCCCccceec----cccC--CcCCEEECCCCCcc
Confidence 9998886 8899999999999999986 34 66 8999999999999998863 2223 34999999999655
Q ss_pred CCCCC-CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccc
Q 040238 188 GPLPV-PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIK 266 (549)
Q Consensus 188 ~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 266 (549)
+.++. .+++|++|++++|.+.+. | +..+++|++|++++|.+++. + +..+ ++|++|++++|++++.
T Consensus 162 ~~~~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~-~--l~~l-~~L~~L~Ls~N~l~~i------- 227 (457)
T 3bz5_A 162 TKLDVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL-D--LNQN-IQLTFLDCSSNKLTEI------- 227 (457)
T ss_dssp CCCCCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTC-TTCSEEECCSSCCSCC-------
T ss_pred cccccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee-c--cccC-CCCCEEECcCCccccc-------
Confidence 55543 489999999999999974 4 78899999999999999864 3 4444 4899999999999862
Q ss_pred cCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccc----------ccccCCCCCccCCCCCceeeCC
Q 040238 267 ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIF----------YGIIKEPRTDCGFSKLRIIDLS 336 (549)
Q Consensus 267 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----------~~~~~~~~~~~~l~~L~~L~ls 336 (549)
| +..+++|++|++++|++++..+ ..+++|+.|++++|.+ .+..+ ...+++|+.|+++
T Consensus 228 ----p--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 228 ----D--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVT 294 (457)
T ss_dssp ----C--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCT
T ss_pred ----C--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECC
Confidence 2 4678999999999999997654 4556666666555433 22221 2455666666666
Q ss_pred CCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCC
Q 040238 337 NNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNN 416 (549)
Q Consensus 337 ~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 416 (549)
+|...+.+|.. ...+ +.|+ +.++++|++|++++|++++. + ++.+++|+.|++++|
T Consensus 295 ~n~~l~~l~~~----~~~L-----~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 295 HNTQLYLLDCQ----AAGI-----TELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCTTCCEEECT----TCCC-----SCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSS
T ss_pred CCcccceeccC----CCcc-----eEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCC
Confidence 66655444421 1111 2222 44557899999999999974 3 889999999999999
Q ss_pred cccccCCcCccCCCCCcEEecccCcCccc
Q 040238 417 KFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 417 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
++++ ++.|..|++++|.+.|.
T Consensus 350 ~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 350 HIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp CCCB--------CTTGGGSSGGGTSEEEE
T ss_pred CCCC--------ccccccccccCCcEEec
Confidence 9985 35677788999998876
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.9e-34 Score=300.85 Aligned_cols=335 Identities=21% Similarity=0.223 Sum_probs=202.0
Q ss_pred CCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCC
Q 040238 21 NLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKL 100 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L 100 (549)
.+++++.|++++|.+....+..|.++++|++|++++|.+++..+.. |..+++|++|++++|.++.++...+. .+++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCCCCCTTTTT-TCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH--hcCCCCCCEEECCCCcCCCCCHHHHc-CCCCC
Confidence 3467777777777777766666777777777777777777555545 67777777777777766665544332 56777
Q ss_pred CEEEccCCCCCCCChh-hcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 101 KYIGLRSCNLTKFPNF-LQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
++|++++|.++.+|.. +..+++|++|++++|.+++..|..+. .+++|+.|++++|.+...+.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~--------------- 188 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDL--------------- 188 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT--TCTTCCEEECTTSCCSBCCG---------------
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh--cCCcCcEEECcCCCCCCcCh---------------
Confidence 7777777777666654 46677777777777777666666666 66777777777666554321
Q ss_pred EccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 180 DLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 180 ~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
..+++|+.|++++|.+.+. ..+++|+.|++++|.++..
T Consensus 189 ------------------------------------~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 189 ------------------------------------SLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVV 226 (597)
T ss_dssp ------------------------------------GGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCCEE
T ss_pred ------------------------------------hhhhhhhhhhcccCccccc------cCCchhheeeccCCccccc
Confidence 1233344444444433311 0111344444444444322
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
.+. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 227 ~~~-------------~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 227 RGP-------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNNR 289 (597)
T ss_dssp ECS-------------CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTSC
T ss_pred ccc-------------cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCCC
Confidence 110 113445555555544431 334444455555555554444433322 344444444444444
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+. + +|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus 290 l~------------------------------~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 290 LV------------------------------A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp CC------------------------------E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CC------------------------------C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 32 2 2333455678888888888887 56677778888888888888887
Q ss_pred ccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 420 GQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+. | +..+++|+.|++++|+|.|.+.. ..+..+....+.+++..|+.+
T Consensus 338 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 338 TL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred Cc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 44 2 66778899999999999877532 234555566677788888764
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=283.11 Aligned_cols=308 Identities=19% Similarity=0.159 Sum_probs=261.7
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++|++++|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.. +..+++|++|++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 124 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVL 124 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--hcCCCCCCEEEC
Confidence 578999999998766666899999999999999999988889999999999999999999766655 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++|.++.++...+. .+++|++|++++|.++.++. .+..+++|++|++++|.+++. + +. .+++|+.|++++|.+
T Consensus 125 ~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~--~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 125 ERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LS--LIPSLFHANVSYNLL 198 (390)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GG--GCTTCSEEECCSSCC
T ss_pred CCCccCcCCHHHhc-CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cc--cccccceeecccccc
Confidence 99999877665433 68999999999999977754 688999999999999999854 2 33 789999999999988
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcch
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 239 (549)
...... ..|+.|++++|.+.......+++|+.|++++|.+.+. .++..+++|++|++++|.+.+..|..+
T Consensus 199 ~~~~~~--------~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STLAIP--------IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEEECC--------SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccCCC--------CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 764322 2399999999999877555688999999999999864 578999999999999999997778777
Q ss_pred hcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccC
Q 040238 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319 (549)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 319 (549)
..+. +|++|++++|.+++. |..+..+++|++|++++|++. .+|..+..+++|++|++++|.+....
T Consensus 269 ~~l~-~L~~L~L~~n~l~~~-----------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~- 334 (390)
T 3o6n_A 269 VKMQ-RLERLYISNNRLVAL-----------NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK- 334 (390)
T ss_dssp TTCS-SCCEEECCSSCCCEE-----------ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred cccc-cCCEEECCCCcCccc-----------CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC-
Confidence 6655 899999999999753 333467899999999999998 45666788899999999999987762
Q ss_pred CCCCccCCCCCceeeCCCCcccccc
Q 040238 320 EPRTDCGFSKLRIIDLSNNIFIGTL 344 (549)
Q Consensus 320 ~~~~~~~l~~L~~L~ls~n~l~~~~ 344 (549)
+..+++|+.|++++|++....
T Consensus 335 ----~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 335 ----LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp ----CCTTCCCSEEECCSSCEEHHH
T ss_pred ----chhhccCCEEEcCCCCccchh
Confidence 367889999999999987543
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-32 Score=268.40 Aligned_cols=307 Identities=24% Similarity=0.314 Sum_probs=170.8
Q ss_pred ccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCC
Q 040238 43 LRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYH 122 (549)
Q Consensus 43 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~ 122 (549)
+..+++|++|+++++.+.. ++ . +..+++|++|++++|.++.++. ...+++|++|++++|.++.++ .+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~--~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-G--IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-T--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred chhcccccEEEEeCCcccc-ch-h--hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 4456677777777776652 22 2 5566777777777776665544 225666777777777666554 4666666
Q ss_pred ccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeec
Q 040238 123 LLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLA 202 (549)
Q Consensus 123 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l 202 (549)
|++|++++|.+.+. +. +. .+++|+.|++++|......+. .... ++|++|++++|.+
T Consensus 112 L~~L~l~~n~i~~~-~~-~~--~l~~L~~L~l~~n~~~~~~~~--~~~l--~~L~~L~l~~~~~---------------- 167 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LA--NLTKMYSLNLGANHNLSDLSP--LSNM--TGLNYLTVTESKV---------------- 167 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GT--TCTTCCEEECTTCTTCCCCGG--GTTC--TTCCEEECCSSCC----------------
T ss_pred CCEEECcCCcccCc-hh-hc--cCCceeEEECCCCCCcccccc--hhhC--CCCcEEEecCCCc----------------
Confidence 66666666666533 22 43 566666666666643322211 0111 1133333333322
Q ss_pred ccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcE
Q 040238 203 SNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEF 282 (549)
Q Consensus 203 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~ 282 (549)
.+..+ +..+++|++|++++|.+.+. +. +.. .++|+++++++|.+++..+ +..+++|++
T Consensus 168 -----~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~-l~~L~~L~l~~n~l~~~~~------------~~~~~~L~~ 225 (347)
T 4fmz_A 168 -----KDVTP--IANLTDLYSLSLNYNQIEDI-SP-LAS-LTSLHYFTAYVNQITDITP------------VANMTRLNS 225 (347)
T ss_dssp -----CCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGG-CTTCCEEECCSSCCCCCGG------------GGGCTTCCE
T ss_pred -----CCchh--hccCCCCCEEEccCCccccc-cc-ccC-CCccceeecccCCCCCCch------------hhcCCcCCE
Confidence 21111 44555555555555555422 21 222 2245555555555443211 234455555
Q ss_pred EEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccce
Q 040238 283 LGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTG 362 (549)
Q Consensus 283 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~ 362 (549)
|++++|.+++..+ +..+++|++|++++|.+.+. ..+..++++ +.
T Consensus 226 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----------------------------~~~~~l~~L-----~~ 269 (347)
T 4fmz_A 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-----------------------------NAVKDLTKL-----KM 269 (347)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------------------GGGTTCTTC-----CE
T ss_pred EEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-----------------------------hhHhcCCCc-----CE
Confidence 5555555543322 44445555555555544432 123333333 55
Q ss_pred EEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcC
Q 040238 363 IILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHL 442 (549)
Q Consensus 363 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 442 (549)
|++++|.+++. +.+..+++|++|++++|.+.+..+..++.+++|+.|++++|++++..| +..+++|++|++++|++
T Consensus 270 L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 55555555543 346778888888888888887777788888888888888888886655 77888888888888877
Q ss_pred c
Q 040238 443 T 443 (549)
Q Consensus 443 ~ 443 (549)
+
T Consensus 346 ~ 346 (347)
T 4fmz_A 346 K 346 (347)
T ss_dssp -
T ss_pred c
Confidence 5
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-33 Score=273.58 Aligned_cols=259 Identities=32% Similarity=0.471 Sum_probs=223.0
Q ss_pred CCcceeecccCCCCC--cCchhhhcCCCCCeEeCcC-CcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCC
Q 040238 195 PGTIHYLASNNSLTG--EIPSWICNLNILESLVLSH-NNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIP 271 (549)
Q Consensus 195 ~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 271 (549)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+. +|++|++++|.+++..|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~--------- 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPD--------- 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCG---------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCH---------
Confidence 356666666777776 7788889999999999994 888888888887765 899999999998866554
Q ss_pred ccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCC-CCceeeCCCCccccccChhhhh
Q 040238 272 RSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFS-KLRIIDLSNNIFIGTLPLKSFL 350 (549)
Q Consensus 272 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~ 350 (549)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|++.+.+|.. +.
T Consensus 120 -~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~-~~ 195 (313)
T 1ogq_A 120 -FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-FA 195 (313)
T ss_dssp -GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-GG
T ss_pred -HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChH-Hh
Confidence 45778899999999999988888889999999999999999987766554 6677 8999999999998877754 44
Q ss_pred ccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC
Q 040238 351 CWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT 430 (549)
Q Consensus 351 ~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 430 (549)
.+. ++.|++++|.+++..|..|..+++|++|++++|.+.+.+|. +..+++|++|++++|++++.+|..+..++
T Consensus 196 ~l~------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 196 NLN------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp GCC------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred CCc------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 443 49999999999999999999999999999999999976665 88999999999999999999999999999
Q ss_pred CCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCCCCCCC
Q 040238 431 FLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRPLSKGC 475 (549)
Q Consensus 431 ~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~c 475 (549)
+|++|++++|++++.+|....++.++...+.+|+++|+.|+. .|
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999999888889999999999999998876 46
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-31 Score=264.55 Aligned_cols=308 Identities=24% Similarity=0.338 Sum_probs=231.1
Q ss_pred cccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCC
Q 040238 18 SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTS 97 (549)
Q Consensus 18 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 97 (549)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++.++. ...+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~~~~---~~~l 109 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDISA---LQNL 109 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GTTC
T ss_pred cchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh----hhcCCcCCEEEccCCcccCchH---HcCC
Confidence 356788999999999988764 2 48889999999999998874322 6888999999999998877643 2368
Q ss_pred CCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCcc
Q 040238 98 QKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLL 177 (549)
Q Consensus 98 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~ 177 (549)
++|++|++++|.++.++. +..+++|++|++++|......+. +. .+++|++|++++|.+....+ .... ++|+
T Consensus 110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~--~l~~L~~L~l~~~~~~~~~~---~~~l--~~L~ 180 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LS--NMTGLNYLTVTESKVKDVTP---IANL--TDLY 180 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GT--TCTTCCEEECCSSCCCCCGG---GGGC--TTCS
T ss_pred CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hh--hCCCCcEEEecCCCcCCchh---hccC--CCCC
Confidence 899999999999988876 88889999999999966544443 65 88999999999998876554 1222 2377
Q ss_pred EEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccC
Q 040238 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFF 257 (549)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 257 (549)
.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +.. .++|++|++++|.++
T Consensus 181 ~L~l~~n~l~----------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~-~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 181 SLSLNYNQIE----------------------DISP-LASLTSLHYFTAYVNQITDITP--VAN-MTRLNSLKIGNNKIT 234 (347)
T ss_dssp EEECTTSCCC----------------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCC
T ss_pred EEEccCCccc----------------------cccc-ccCCCccceeecccCCCCCCch--hhc-CCcCCEEEccCCccC
Confidence 7777766554 2222 7788899999999998885443 333 448999999999887
Q ss_pred CcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCC
Q 040238 258 GTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSN 337 (549)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 337 (549)
+.. . +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.. .+..+++|+.|++++
T Consensus 235 ~~~-----------~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 235 DLS-----------P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCG-----------G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCS
T ss_pred CCc-----------c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcC
Confidence 532 2 57889999999999999864 46788889999999998876641 124455555555555
Q ss_pred CccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCc
Q 040238 338 NIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417 (549)
Q Consensus 338 n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 417 (549)
| .+++..+..|..+++|++|++++|++++..| +..+++|+.|++++|+
T Consensus 297 n------------------------------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 297 N------------------------------QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp S------------------------------CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred C------------------------------cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 4 4555666778888999999999999986555 7888999999999998
Q ss_pred cc
Q 040238 418 FS 419 (549)
Q Consensus 418 l~ 419 (549)
++
T Consensus 345 i~ 346 (347)
T 4fmz_A 345 IK 346 (347)
T ss_dssp --
T ss_pred cc
Confidence 76
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.8e-33 Score=293.23 Aligned_cols=309 Identities=19% Similarity=0.156 Sum_probs=264.6
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+.. |..+++|++|++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 130 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTVLVL 130 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH--HcCCCCCCEEEe
Confidence 578999999998777777899999999999999999999899999999999999999999766655 899999999999
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
++|.++.++...+. .+++|++|++++|.++.++. .+..+++|++|++++|.+++.. +. .+++|+.|++++|.+
T Consensus 131 ~~n~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~--~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 131 ERNDLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS--LIPSLFHANVSYNLL 204 (597)
T ss_dssp CSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GG--GCTTCSEEECCSSCC
T ss_pred eCCCCCCCCHHHhc-cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hh--hhhhhhhhhcccCcc
Confidence 99998877665433 68999999999999976654 7899999999999999998542 33 788999999999988
Q ss_pred CCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcch
Q 040238 160 TGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239 (549)
Q Consensus 160 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 239 (549)
.+.... . .|+.|++++|.+....+..+++|+.|++++|.+.+ +.++..+++|+.|++++|.+.+..|..+
T Consensus 205 ~~l~~~------~--~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 STLAIP------I--AVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SEEECC------T--TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccccCC------c--hhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 764322 2 39999999999987766667899999999999987 4778999999999999999998888887
Q ss_pred hcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccC
Q 040238 240 GNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK 319 (549)
Q Consensus 240 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 319 (549)
..+. +|++|+|++|.+++. |..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..
T Consensus 275 ~~l~-~L~~L~Ls~N~l~~l-----------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~- 340 (597)
T 3oja_B 275 VKMQ-RLERLYISNNRLVAL-----------NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK- 340 (597)
T ss_dssp TTCS-SCCEEECTTSCCCEE-----------ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred cCcc-CCCEEECCCCCCCCC-----------CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC-
Confidence 7665 899999999999753 334467899999999999998 56677888999999999999997763
Q ss_pred CCCCccCCCCCceeeCCCCccccccC
Q 040238 320 EPRTDCGFSKLRIIDLSNNIFIGTLP 345 (549)
Q Consensus 320 ~~~~~~~l~~L~~L~ls~n~l~~~~~ 345 (549)
+..+++|+.|++++|++.+...
T Consensus 341 ----~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 341 ----LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp ----CCTTCCCSEEECCSSCEEHHHH
T ss_pred ----hhhcCCCCEEEeeCCCCCChhH
Confidence 3678899999999999875433
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.1e-30 Score=253.46 Aligned_cols=288 Identities=20% Similarity=0.215 Sum_probs=182.3
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|.. |..+++|++|++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 107 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA--FAPLVKLERLYL 107 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT--TTTCTTCCEEEC
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH--hcCCCCCCEEEC
Confidence 466777777776 3444433 56777777777777776667777777777777777777555655 677777777777
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCC--CCCcccccccCCCCcEEEccCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQG--KVPKWLLDPNMQNLNALNISHN 157 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n 157 (549)
++|.++.++... .++|++|++++|.++.++. .+..+++|++|++++|.+.. ..+..+. .+++|+.|++++|
T Consensus 108 s~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n 181 (330)
T 1xku_A 108 SKNQLKELPEKM----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADT 181 (330)
T ss_dssp CSSCCSBCCSSC----CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG--GCTTCCEEECCSS
T ss_pred CCCcCCccChhh----cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc--CCCCcCEEECCCC
Confidence 777766554432 2577777777777766654 46677777777777777643 4455555 6777777777777
Q ss_pred cCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCc
Q 040238 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 237 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 237 (549)
.+..++... .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 182 ~l~~l~~~~---------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 182 NITTIPQGL---------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp CCCSCCSSC---------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCCccc---------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh
Confidence 666544321 23444444444555555566777778888888888877755555
Q ss_pred chhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC------CCCCCEEEccC
Q 040238 238 CLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT------LPNLNVLILRS 311 (549)
Q Consensus 238 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~ 311 (549)
.+.... +|++|++++|.++ .+|.++..+++|++|++++|++++..+..|.. .+.++.+++++
T Consensus 235 ~~~~l~-~L~~L~L~~N~l~-----------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 235 SLANTP-HLRELHLNNNKLV-----------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp TGGGST-TCCEEECCSSCCS-----------SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred hccCCC-CCCEEECCCCcCc-----------cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 555443 6777777777775 23444566777777777777777665555533 24566666666
Q ss_pred cccccccCCCCCccCCCCCceeeCCCC
Q 040238 312 NIFYGIIKEPRTDCGFSKLRIIDLSNN 338 (549)
Q Consensus 312 n~l~~~~~~~~~~~~l~~L~~L~ls~n 338 (549)
|++......+..+..+.+++.+++++|
T Consensus 303 N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccCccccccccceeEEEeccc
Confidence 665432222223344555555555554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-30 Score=250.42 Aligned_cols=289 Identities=21% Similarity=0.211 Sum_probs=194.6
Q ss_pred CCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcE
Q 040238 73 KNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNA 151 (549)
Q Consensus 73 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 151 (549)
.+++.++++++.++.++... .+++++|++++|.++.++. .+..+++|++|++++|.+++..|..+. .+++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA--PLVKLER 104 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT--TCTTCCE
T ss_pred CCCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc--CCCCCCE
Confidence 36778888877766655432 3577888888888776665 577778888888888887766677776 7777888
Q ss_pred EEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcC
Q 040238 152 LNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNL 231 (549)
Q Consensus 152 L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l 231 (549)
|++++|.+..++... .++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 105 L~Ls~n~l~~l~~~~---------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 105 LYLSKNQLKELPEKM---------------------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp EECCSSCCSBCCSSC---------------------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccChhh---------------------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence 888777776544331 13344444455555556666788888888888888887
Q ss_pred CC--cCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEc
Q 040238 232 SG--LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLIL 309 (549)
Q Consensus 232 ~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 309 (549)
.. ..+..+..+. +|++|++++|.++.. |..+ .++|++|++++|++++..+..+..+++|++|++
T Consensus 158 ~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l-----------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 158 KSSGIENGAFQGMK-KLSYIRIADTNITTI-----------PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CGGGBCTTGGGGCT-TCCEEECCSSCCCSC-----------CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred CccCcChhhccCCC-CcCEEECCCCccccC-----------Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 53 4444454443 788888888877642 2222 267788888888877766777777777777777
Q ss_pred cCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEc
Q 040238 310 RSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNL 389 (549)
Q Consensus 310 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 389 (549)
++|.+.+..+..+ ..+++|++|++++|++ + .+|..+..+++|++|++
T Consensus 224 s~n~l~~~~~~~~--~~l~~L~~L~L~~N~l------------------------------~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 224 SFNSISAVDNGSL--ANTPHLRELHLNNNKL------------------------------V-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp CSSCCCEECTTTG--GGSTTCCEEECCSSCC------------------------------S-SCCTTTTTCSSCCEEEC
T ss_pred CCCcCceeChhhc--cCCCCCCEEECCCCcC------------------------------c-cCChhhccCCCcCEEEC
Confidence 7777766644333 4555666665555554 3 34556677788888888
Q ss_pred cCCccccCCCcccCC------CCCCCEeeCCCCcccc--cCCcCccCCCCCcEEecccCc
Q 040238 390 QNNSLQGHIPSCLGN------LPNLESLDLSNNKFSG--QIPQQLVELTFLEFFNVSDNH 441 (549)
Q Consensus 390 ~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~ 441 (549)
++|++++..+..|.. .+.|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888666666643 3678888888888763 456677888888888888874
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.5e-30 Score=252.01 Aligned_cols=290 Identities=20% Similarity=0.182 Sum_probs=201.5
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
+++.++++++.+... |..+ .++|++|++++|.+++..+.. |.++++|++|++++|.++.+....+. .+++|++|
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDISELRKDD--FKGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCSSCCCEECGGGST-TCTTCCEE
T ss_pred cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCCccCHhH--hhCCCCCcEEECCCCccCccCHhHhh-CcCCCCEE
Confidence 577777777776633 3333 256777777777777544544 67777777777777776666443332 56777777
Q ss_pred EccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC--CCCccccccCCCCCccEEEc
Q 040238 104 GLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG--FDQHLVVLPANKGDLLTFDL 181 (549)
Q Consensus 104 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~~~~L~~L~L 181 (549)
++++|.++.+|..+. ++|++|++++|.++...+..+. .+++|+.|++++|.+.. ..+..+ ... +|+.|++
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~-~~l---~L~~L~l 179 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFS--GLRNMNCIEMGGNPLENSGFEPGAF-DGL---KLNYLRI 179 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGS--SCSSCCEEECCSCCCBGGGSCTTSS-CSC---CCSCCBC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhC--CCccCCEEECCCCccccCCCCcccc-cCC---ccCEEEC
Confidence 777777777776544 6777777777777755555566 77777777777777753 222211 111 3777778
Q ss_pred cCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCC
Q 040238 182 SSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIP 261 (549)
Q Consensus 182 ~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 261 (549)
++|.+.+......++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.... +|++|++++|.++
T Consensus 180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~---- 254 (332)
T 2ft3_A 180 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLS---- 254 (332)
T ss_dssp CSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCC----
T ss_pred cCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCe----
Confidence 77777764434457888888888888887778888899999999999998866665665544 8999999999886
Q ss_pred CcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCC------CCCCCEEEccCcccccccCCCCCccCCCCCceeeC
Q 040238 262 NTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGT------LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDL 335 (549)
Q Consensus 262 ~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 335 (549)
.+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|++.........+..+++|+.+++
T Consensus 255 -------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 255 -------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp -------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred -------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 23455678889999999999998776666654 36788999999988743333344577889999999
Q ss_pred CCCc
Q 040238 336 SNNI 339 (549)
Q Consensus 336 s~n~ 339 (549)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 8875
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.9e-35 Score=298.42 Aligned_cols=366 Identities=19% Similarity=0.143 Sum_probs=161.9
Q ss_pred CcEEECCCCCCCCccccc-ccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCccccCchhhcCCCC--
Q 040238 1 LQFLYLRLNNFSGDLLGS-IGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWK-- 73 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~-- 73 (549)
|++|||++|.+++..... +..+++|++|++++|.+.+. +++.+..+++|++|++++|.+.+..+.. ++..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~ 83 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC-VLQGLQTP 83 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH-HHHTTCST
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH-HHHHHhhC
Confidence 355666666665443322 55566666666666665532 3445555666666666666655322222 222233
Q ss_pred --CCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCccccc---ccCCC
Q 040238 74 --NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLD---PNMQN 148 (549)
Q Consensus 74 --~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~~l~~ 148 (549)
+|++|++++|.++..+. ..++..+..+++|++|++++|.+++..+..+.. ...++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143 (461)
T ss_dssp TCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence 35555555554332210 023444555556666666665554322222220 01234
Q ss_pred CcEEEccCCcCCCCCCcccccc-CCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhh-----cCCCCC
Q 040238 149 LNALNISHNFLTGFDQHLVVLP-ANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWIC-----NLNILE 222 (549)
Q Consensus 149 L~~L~L~~n~~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~ 222 (549)
|++|++++|++........... ...++|++|++++|.+ .+..+..+. ..++|+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i---------------------~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI---------------------NEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC---------------------HHHHHHHHHHHHHHSCCCCC
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc---------------------chHHHHHHHHHHhcCCCCce
Confidence 5555555554443211100000 0000122222222222 111112221 244666
Q ss_pred eEeCcCCcCCCc----CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCC----c
Q 040238 223 SLVLSHNNLSGL----LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDT----F 294 (549)
Q Consensus 223 ~L~Ls~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~----~ 294 (549)
+|++++|.+++. ++..+.... +|++|++++|.+++.....+. +..+..+++|++|++++|.+++. +
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELC-----PGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHH-----HHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHH-----HHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 666666666542 233333323 566666666665432111000 01112356666666666666543 3
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCC---ccCCCCCceeeCCCCccccccCh---hhhhccccccccccceEEccCC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRT---DCGFSKLRIIDLSNNIFIGTLPL---KSFLCWNAMKIVNTTGIILSNN 368 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~---~~~~~l~~l~~~~l~~L~l~~n 368 (549)
+..+..+++|++|++++|.+.+.....+. ....++|++|++++|.+.+.... ..+..++++ +.|++++|
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-----~~L~Ls~n 351 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL-----LELQISNN 351 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC-----CEEECCSS
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc-----cEEEccCC
Confidence 44445566666666666655432111110 01224566666666655432111 112222333 55555555
Q ss_pred cCcccCchhhcC-----CCCCCEEEccCCcccc----CCCcccCCCCCCCEeeCCCCccc
Q 040238 369 SFDSVIPASIAN-----LKGLQVLNLQNNSLQG----HIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 369 ~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 554433332221 3455555555555543 34444445555555555555554
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=8e-30 Score=249.43 Aligned_cols=289 Identities=18% Similarity=0.185 Sum_probs=214.4
Q ss_pred CcEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEec
Q 040238 1 LQFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLAL 80 (549)
Q Consensus 1 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~L 80 (549)
+++++++++.++ .+|..+. ++|++|++++|.+.+..++.|.++++|++|++++|.+++..+.. |.++++|++|++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L 109 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA--FSPLRKLQKLYI 109 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG--STTCTTCCEEEC
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH--hhCcCCCCEEEC
Confidence 567888888887 4455443 67888888888888777778888888888888888888665666 788888888888
Q ss_pred cCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCC--CCCcccccccCCCCcEEEccCC
Q 040238 81 SLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQG--KVPKWLLDPNMQNLNALNISHN 157 (549)
Q Consensus 81 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~L~~n 157 (549)
++|.++.++... .++|++|++++|.++.+|. .+..+++|++|++++|.++. ..+..+. .+ +|+.|++++|
T Consensus 110 ~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l-~L~~L~l~~n 182 (332)
T 2ft3_A 110 SKNHLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD--GL-KLNYLRISEA 182 (332)
T ss_dssp CSSCCCSCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC--SC-CCSCCBCCSS
T ss_pred CCCcCCccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc--CC-ccCEEECcCC
Confidence 888777655443 2688888888888877775 47788888888888888753 5566665 55 8888888888
Q ss_pred cCCCCCCccccccCCCCCccEEEccCCcCCCCCCCC---CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCc
Q 040238 158 FLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVP---PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 234 (549)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 234 (549)
++..++.... ++|++|++++|.+.+..+.. +++|++|++++|.+.+..+.++..+++|++|++++|.+. .
T Consensus 183 ~l~~l~~~~~------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 183 KLTGIPKDLP------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp BCSSCCSSSC------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred CCCccCcccc------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 8887655421 23888888888888766443 678888888888888877778888888888888888888 6
Q ss_pred CCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC--CCcCcccCCCCCCCEEEccCc
Q 040238 235 LPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS--DTFPSWLGTLPNLNVLILRSN 312 (549)
Q Consensus 235 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n 312 (549)
+|..+.... +|++|++++|.+++..+..|.... .-...+.|+.|++++|.+. +..+..|..+++|+.+++++|
T Consensus 256 lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~----~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 256 VPAGLPDLK-LLQVVYLHTNNITKVGVNDFCPVG----FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCTTGGGCT-TCCEEECCSSCCCBCCTTSSSCSS----CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cChhhhcCc-cCCEEECCCCCCCccChhHccccc----cccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 777766554 788888888888876665552100 0112467888888888876 566777888888888888877
Q ss_pred c
Q 040238 313 I 313 (549)
Q Consensus 313 ~ 313 (549)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 4
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.1e-31 Score=256.70 Aligned_cols=250 Identities=29% Similarity=0.405 Sum_probs=212.4
Q ss_pred ccEEEccCCcCCC--CCCCC---CCCcceeeccc-CCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCee
Q 040238 176 LLTFDLSSNNLQG--PLPVP---PPGTIHYLASN-NSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVL 249 (549)
Q Consensus 176 L~~L~L~~n~l~~--~~~~~---~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 249 (549)
++.|++++|.+.+ .+|.. +++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+. +|++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L 130 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCCEE
Confidence 6777777777766 55543 67788888884 788888899999999999999999999988888887765 89999
Q ss_pred ecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCC-CCCEEEccCcccccccCCCCCccCCC
Q 040238 250 DLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP-NLNVLILRSNIFYGIIKEPRTDCGFS 328 (549)
Q Consensus 250 ~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~ 328 (549)
++++|.+++.+|. .+..+++|++|++++|++++..|..+..++ +|++|++++|.+.+..+..+ ..+.
T Consensus 131 ~Ls~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~ 198 (313)
T 1ogq_A 131 DFSYNALSGTLPP----------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN 198 (313)
T ss_dssp ECCSSEEESCCCG----------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC
T ss_pred eCCCCccCCcCCh----------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc
Confidence 9999999865544 457889999999999999988898898888 99999999999988776655 5565
Q ss_pred CCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
|+.|++++|++.+..| ..|..++++ +.|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|
T Consensus 199 -L~~L~Ls~N~l~~~~~-~~~~~l~~L-----~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDAS-VLFGSDKNT-----QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp -CSEEECCSSEEEECCG-GGCCTTSCC-----SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred -ccEEECcCCcccCcCC-HHHhcCCCC-----CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 9999999999887655 557777777 9999999999877666 8889999999999999999999999999999
Q ss_pred CEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 409 ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 409 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+.|++++|++++.+|.. ..+++|+.+++++|+..|..|
T Consensus 271 ~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 99999999999999986 889999999999998655544
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.1e-33 Score=290.35 Aligned_cols=370 Identities=18% Similarity=0.119 Sum_probs=243.3
Q ss_pred CcEEECCCCCCCCc----ccccccCCCCCCEEEccCCcCCccccccc-cCCC----CCCEEeCCCCcCcc----ccCchh
Q 040238 1 LQFLYLRLNNFSGD----LLGSIGNLRSLEAIHIAKCNVSGQITSSL-RNLS----QLFFLDLAKNSYRG----TIKLDV 67 (549)
Q Consensus 1 L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~----~L~~L~Ls~n~i~~----~~~~~~ 67 (549)
|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.+.. .++..
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~- 108 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST- 108 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH-
Confidence 68999999999854 46778889999999999999986544333 3455 79999999999984 33444
Q ss_pred hcCCCCCCCeEeccCCccceeeccCCCc----CCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCCCCC
Q 040238 68 LLTSWKNLEFLALSLNRLSVLTKATSNT----TSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQGKVP 138 (549)
Q Consensus 68 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~~~~ 138 (549)
+..+++|++|++++|.++..+...... ..++|++|++++|.++. ++..+..+++|++|++++|.+++..+
T Consensus 109 -l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 109 -LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp -TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred -HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 889999999999999776543321111 24568888888887743 34455666777777777777654333
Q ss_pred ccccc---ccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhh
Q 040238 139 KWLLD---PNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWI 215 (549)
Q Consensus 139 ~~~~~---~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 215 (549)
..+.. ...++|++|++++|.+...... .++..+
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------------------------------------~l~~~l 223 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCR--------------------------------------------DLCGIV 223 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHH--------------------------------------------HHHHHH
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHH--------------------------------------------HHHHHH
Confidence 33320 0133555555555544321100 235566
Q ss_pred hcCCCCCeEeCcCCcCCCcCC----cchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC
Q 040238 216 CNLNILESLVLSHNNLSGLLP----QCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS 291 (549)
Q Consensus 216 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 291 (549)
..+++|++|++++|.+.+... ..+....++|++|++++|.+++.... .++..+..+++|++|++++|.+.
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG------DLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH------HHHHHHHHCTTCCEEECTTCCCH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH------HHHHHHhhCCCcceEECCCCCCc
Confidence 777888888888887764322 22222344788888888877643111 13445667888889999888886
Q ss_pred CCcCcccC-----CCCCCCEEEccCcccccccCCC--CCccCCCCCceeeCCCCccccccChhhhhccccccccccceEE
Q 040238 292 DTFPSWLG-----TLPNLNVLILRSNIFYGIIKEP--RTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGII 364 (549)
Q Consensus 292 ~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~ 364 (549)
+..+..+. ..++|++|++++|.+++..... ..+..+++|++|++++|++.+..+......+.. ...+++.|+
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~ 376 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ-PGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS-TTCCCCEEE
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC-CCCceEEEE
Confidence 54333332 2368999999999876542111 112467899999999998865443322222210 022449999
Q ss_pred ccCCcCcc----cCchhhcCCCCCCEEEccCCccccCCCc----cc-CCCCCCCEeeCCCCcccccCC
Q 040238 365 LSNNSFDS----VIPASIANLKGLQVLNLQNNSLQGHIPS----CL-GNLPNLESLDLSNNKFSGQIP 423 (549)
Q Consensus 365 l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~-~~l~~L~~L~l~~n~l~~~~~ 423 (549)
+++|.+++ .++..+..+++|++|++++|++.+.... .+ ....+|+.|++.++.+....+
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 99999996 6788889999999999999999854221 12 234568888888877764443
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.8e-28 Score=237.13 Aligned_cols=252 Identities=22% Similarity=0.213 Sum_probs=188.6
Q ss_pred EEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCc--CCcchhcCCCCCCeeecCCCc
Q 040238 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL--LPQCLGNSSDELSVLDLQGNN 255 (549)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~~L~~L~L~~n~ 255 (549)
.++++++.++......++++++|++++|.+....+..|..+++|++|++++|.+... .+..+... ++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCCCc
Confidence 444444444433222344566666666666644445567788888888888877632 24444443 378888888887
Q ss_pred cCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC-cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceee
Q 040238 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 256 l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (549)
+++ +|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus 90 i~~-----------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 156 (306)
T 2z66_A 90 VIT-----------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLK 156 (306)
T ss_dssp EEE-----------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEE
T ss_pred ccc-----------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEE
Confidence 753 24445778888888888888876554 567788888888888888877655544 6778888888
Q ss_pred CCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLS 414 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 414 (549)
+++|.+.+...+..+..++++ +.|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNL-----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTC-----CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCCCccccccchhHHhhCcCC-----CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 888887763333446666666 888899999988888899999999999999999998777789999999999999
Q ss_pred CCcccccCCcCccCCC-CCcEEecccCcCcccCCC
Q 040238 415 NNKFSGQIPQQLVELT-FLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 415 ~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~p~ 448 (549)
+|++++..|..+..++ +|++|++++|+++|.++.
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9999999999999985 999999999999988753
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.2e-27 Score=244.25 Aligned_cols=252 Identities=19% Similarity=0.156 Sum_probs=203.9
Q ss_pred ccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCc
Q 040238 176 LLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN 255 (549)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 255 (549)
...++.++..++.......+++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+. +|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCc
Confidence 34555555555543333356777777777777777788888999999999999999866666666554 89999999999
Q ss_pred cCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc-cccccCCCCCccCCCCCceee
Q 040238 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI-FYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 256 l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~ 334 (549)
+++..+.. +..+++|++|++++|+++...+..|..+++|++|++++|. +..+....+ .++++|++|+
T Consensus 135 l~~~~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~ 202 (452)
T 3zyi_A 135 LTVIPSGA----------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLN 202 (452)
T ss_dssp CSBCCTTT----------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCTTCCEEE
T ss_pred CCccChhh----------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc--cCCCCCCEEE
Confidence 88655443 4678899999999999987777788899999999999854 444433333 7889999999
Q ss_pred CCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLS 414 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 414 (549)
+++|++.+. | .+..+++| +.|++++|.+++..|..|.++++|++|++++|++.+..+..|..+++|+.|+|+
T Consensus 203 L~~n~l~~~-~--~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 203 LGMCNIKDM-P--NLTPLVGL-----EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp CTTSCCSSC-C--CCTTCTTC-----CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCccccc-c--cccccccc-----cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 999998743 3 24445555 999999999999999999999999999999999998889999999999999999
Q ss_pred CCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 415 NNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 415 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
+|++++..+..|..+++|+.|++++|++.|.+..
T Consensus 275 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp SSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999988888899999999999999999998763
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=241.44 Aligned_cols=250 Identities=21% Similarity=0.168 Sum_probs=195.5
Q ss_pred cEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCcc
Q 040238 177 LTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF 256 (549)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 256 (549)
..++.++..++.......++++.|++++|.+.+..+..|..+++|++|+|++|.+.+..+..+..+. +|++|+|++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcC
Confidence 3445555444433333345666666777777767777788888888888888888855555555444 788888888888
Q ss_pred CCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc-cccccCCCCCccCCCCCceeeC
Q 040238 257 FGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI-FYGIIKEPRTDCGFSKLRIIDL 335 (549)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~l 335 (549)
++..+.. +..+++|++|++++|.++...+..|..+++|++|++++|. +..+.+..+ .++++|++|++
T Consensus 125 ~~~~~~~----------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~--~~l~~L~~L~L 192 (440)
T 3zyj_A 125 TTIPNGA----------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--EGLSNLRYLNL 192 (440)
T ss_dssp SSCCTTT----------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT--TTCSSCCEEEC
T ss_pred CeeCHhH----------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchh--hcccccCeecC
Confidence 7554433 4678888899999888887777788888889999998854 444433333 77888999999
Q ss_pred CCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCC
Q 040238 336 SNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415 (549)
Q Consensus 336 s~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 415 (549)
++|++. .+|. +..+++| +.|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|+.|+|++
T Consensus 193 ~~n~l~-~~~~--~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 193 AMCNLR-EIPN--LTPLIKL-----DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp TTSCCS-SCCC--CTTCSSC-----CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCcCc-cccc--cCCCccc-----CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 998876 3442 4445555 8999999999999899999999999999999999988899999999999999999
Q ss_pred CcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 416 NKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 416 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
|++++..+..|..+++|+.|++++|+|.|.|.
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99998888889999999999999999999876
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=241.04 Aligned_cols=283 Identities=20% Similarity=0.169 Sum_probs=167.1
Q ss_pred CCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCC
Q 040238 96 TSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGD 175 (549)
Q Consensus 96 ~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~ 175 (549)
.|+.....+.+++.++.+|..+. ++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+.
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~---------- 94 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEED---------- 94 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTT----------
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccCHh----------
Confidence 34445556667777777776443 3677777777777654444555 666666666666665543322
Q ss_pred ccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCc
Q 040238 176 LLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN 255 (549)
Q Consensus 176 L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 255 (549)
.|..+++|++|++++|.+++ ++...+...++|++|++++|.
T Consensus 95 --------------------------------------~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 95 --------------------------------------SFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp --------------------------------------TTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCC
T ss_pred --------------------------------------hcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCC
Confidence 23334444444444444442 222211112244444444444
Q ss_pred cCCcCCCcccccCCCCccccCCCCCcEEEccCC-cCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceee
Q 040238 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNN-QISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 256 l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (549)
+++..+. ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus 136 l~~l~~~---------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~ 204 (353)
T 2z80_A 136 YKTLGET---------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLI 204 (353)
T ss_dssp CSSSCSS---------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEE
T ss_pred CcccCch---------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeec
Confidence 4322110 12344555555555555 3444444455555566666666665555544433 4556666666
Q ss_pred CCCCccccccChhhhhccccccccccceEEccCCcCcccCchhh---cCCCCCCEEEccCCcccc----CCCcccCCCCC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI---ANLKGLQVLNLQNNSLQG----HIPSCLGNLPN 407 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~ 407 (549)
+++|++. .+|...+..++++ +.|++++|.+++..+..+ ...+.++.++++++.+.+ .+|+.+..+++
T Consensus 205 l~~n~l~-~~~~~~~~~~~~L-----~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 205 LHMKQHI-LLLEIFVDVTSSV-----ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EECSCST-THHHHHHHHTTTE-----EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CCCCccc-cchhhhhhhcccc-----cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 6666542 3444444445555 666777777666544332 345678888888888775 46778899999
Q ss_pred CCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 408 LESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 408 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
|+.|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus 279 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 99999999999944444468999999999999999998874
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.7e-28 Score=239.00 Aligned_cols=282 Identities=16% Similarity=0.144 Sum_probs=160.2
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCC
Q 040238 22 LRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLK 101 (549)
Q Consensus 22 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 101 (549)
|+.....+++++.++.+ |..+. ++|++|++++|.+++..+.. +.++++|++|++++|.++.+....+. .+++|+
T Consensus 30 C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~ 103 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSD--LQRCVNLQALVLTSNGINTIEEDSFS-SLGSLE 103 (353)
T ss_dssp ECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTSCCCEECTTTTT-TCTTCC
T ss_pred CCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHH--hccCCCCCEEECCCCccCccCHhhcC-CCCCCC
Confidence 44445556666665533 22222 35666666666666333333 56666666666666655554433222 456666
Q ss_pred EEEccCCCCCCCChh-hcCCCCccEEEeecCcCCCCCC-cccccccCCCCcEEEccCCc-CCCCCCccccccCCCCCccE
Q 040238 102 YIGLRSCNLTKFPNF-LQNQYHLLVLDLSDNRIQGKVP-KWLLDPNMQNLNALNISHNF-LTGFDQHLVVLPANKGDLLT 178 (549)
Q Consensus 102 ~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~L~~ 178 (549)
+|++++|.++.+|.. +..+++|++|++++|+++...+ ..+. .+++|++|++++|+ +....+.. +.... +|++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~-~~~l~--~L~~ 178 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS--HLTKLQILRVGNMDTFTKIQRKD-FAGLT--FLEE 178 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCT--TCTTCCEEEEEESSSCCEECTTT-TTTCC--EEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhc--cCCCCcEEECCCCccccccCHHH-ccCCC--CCCE
Confidence 666666666666653 5666666666666666653322 2454 66666666666663 33332221 11111 1333
Q ss_pred EEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCC
Q 040238 179 FDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFG 258 (549)
Q Consensus 179 L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 258 (549)
|++++| .+.+..|..+..+++|++|++++|.+. .+|..+....++|++|++++|.+++
T Consensus 179 L~l~~n---------------------~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 179 LEIDAS---------------------DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEEET---------------------TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred EECCCC---------------------CcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence 333333 333344555666666777777776665 4444444434467777777776665
Q ss_pred cCCCcccccCCCCccccCCCCCcEEEccCCcCCC----CcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceee
Q 040238 259 TIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD----TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIID 334 (549)
Q Consensus 259 ~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (549)
..+..+. .....+.++.++++++.+.+ .+|..+..+++|++|++++|.+..+....+ ..+++|++|+
T Consensus 237 ~~~~~l~-------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~ 307 (353)
T 2z80_A 237 FHFSELS-------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF--DRLTSLQKIW 307 (353)
T ss_dssp CCCC-------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred ccccccc-------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH--hcCCCCCEEE
Confidence 4433221 12335667777887777765 345667778888888888888876544333 6778888888
Q ss_pred CCCCccccccC
Q 040238 335 LSNNIFIGTLP 345 (549)
Q Consensus 335 ls~n~l~~~~~ 345 (549)
+++|++.+..|
T Consensus 308 L~~N~~~~~~~ 318 (353)
T 2z80_A 308 LHTNPWDCSCP 318 (353)
T ss_dssp CCSSCBCCCHH
T ss_pred eeCCCccCcCC
Confidence 88888776554
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.3e-30 Score=274.21 Aligned_cols=404 Identities=15% Similarity=0.056 Sum_probs=242.3
Q ss_pred ccccccCCCCCCEEEccCCcCC---cccccc------------ccCCCCCCEEeCCCCcCccccCchhhcCC-CCC-CCe
Q 040238 15 LLGSIGNLRSLEAIHIAKCNVS---GQITSS------------LRNLSQLFFLDLAKNSYRGTIKLDVLLTS-WKN-LEF 77 (549)
Q Consensus 15 ~~~~~~~l~~L~~L~Ls~n~~~---~~~~~~------------~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~-l~~-L~~ 77 (549)
.+..+.++++|++|++++|... +..|.. +..+++|++|++++|.+++..... +.. +++ |++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~--l~~~~~~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR--LAKARADDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH--HHHHHGGGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHH--HHHhccccCcE
Confidence 3444567777888888765321 112211 226777888888877776444433 333 333 788
Q ss_pred EeccCCccceeeccCC---CcCCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCCCC----Cccccccc
Q 040238 78 LALSLNRLSVLTKATS---NTTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQGKV----PKWLLDPN 145 (549)
Q Consensus 78 L~Ls~n~i~~~~~~~~---~~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~ 145 (549)
|++++|. .+..... ...+++|++|++++|.++. ++.....+++|++|++++|.+++.. +..+. .
T Consensus 143 L~L~~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~--~ 218 (592)
T 3ogk_B 143 LKLDKCS--GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR--N 218 (592)
T ss_dssp EEEESCE--EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH--H
T ss_pred EECcCCC--CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh--h
Confidence 8887773 2211111 1156778888888876622 3334556777888888877775322 22333 5
Q ss_pred CCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCC---CCC---CCCCCcceeecccCCCCCcCchhhhcCC
Q 040238 146 MQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQG---PLP---VPPPGTIHYLASNNSLTGEIPSWICNLN 219 (549)
Q Consensus 146 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~---~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 219 (549)
+++|+.|++++|.+.+.+.. .... ++|++|+++...... ..+ ..+++|+.+.+.++. ...+|..+..++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~--~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~ 293 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGF--FKAA--ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAA 293 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHH--HHHC--TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGG
T ss_pred CCCCcEEeccCccHHHHHHH--Hhhh--hHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcC
Confidence 67788888887776653321 2222 237777776432211 111 125677777777642 345667777788
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccC-----------C
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN-----------N 288 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~-----------n 288 (549)
+|++|++++|.+.+.....+....++|++|+++ +.+... .++.....+++|++|++++ +
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~---------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR---------GLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH---------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH---------HHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 888888888886644433333444578888887 433321 1223345678888888883 4
Q ss_pred cCCCCcC-cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCC----CCccccccCh----hhhhccccccccc
Q 040238 289 QISDTFP-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS----NNIFIGTLPL----KSFLCWNAMKIVN 359 (549)
Q Consensus 289 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls----~n~l~~~~~~----~~~~~l~~l~~~~ 359 (549)
.+++... .....+++|++|+++.|.+++...... ...+++|+.|+++ .|.+++.... ..+..+++|
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L---- 438 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESI-GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL---- 438 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH-HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC----
T ss_pred ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH-HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC----
Confidence 5553322 223457888888887777765432222 1237788888885 5555542111 123445555
Q ss_pred cceEEccCCc--CcccCchhh-cCCCCCCEEEccCCcccc-CCCcccCCCCCCCEeeCCCCccccc-CCcCccCCCCCcE
Q 040238 360 TTGIILSNNS--FDSVIPASI-ANLKGLQVLNLQNNSLQG-HIPSCLGNLPNLESLDLSNNKFSGQ-IPQQLVELTFLEF 434 (549)
Q Consensus 360 l~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 434 (549)
+.|++++|. +++..+..+ ..+++|++|++++|++++ .++..+..+++|+.|++++|++++. ++.....+++|++
T Consensus 439 -~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 439 -RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp -CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred -CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 888887543 555444444 347889999999888875 3445567888899999999987654 3444456888999
Q ss_pred EecccCcCccc
Q 040238 435 FNVSDNHLTGL 445 (549)
Q Consensus 435 L~l~~N~l~~~ 445 (549)
|++++|+++..
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 99999987643
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-27 Score=228.75 Aligned_cols=229 Identities=21% Similarity=0.210 Sum_probs=143.6
Q ss_pred cEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCc-
Q 040238 177 LTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNN- 255 (549)
Q Consensus 177 ~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~- 255 (549)
+.++.+++.++......++++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+. +|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCC
Confidence 3455555555433222244555556666666555556666777777777777777655555554443 66777776665
Q ss_pred cCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeC
Q 040238 256 FFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDL 335 (549)
Q Consensus 256 l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l 335 (549)
+....+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++
T Consensus 93 l~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l 160 (285)
T 1ozn_A 93 LRSVDPA----------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFL 160 (285)
T ss_dssp CCCCCTT----------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred ccccCHH----------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEEC
Confidence 4433222 23556666677777766666556666666666666666666655443322 44555555555
Q ss_pred CCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCC
Q 040238 336 SNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415 (549)
Q Consensus 336 s~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 415 (549)
++|+ +++..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++
T Consensus 161 ~~n~------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 161 HGNR------------------------------ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CSSC------------------------------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCc------------------------------ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 5554 4444455567777777777777777776677777777788888888
Q ss_pred CcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 416 NKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 416 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 877765556677777788888888877776654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.5e-27 Score=238.27 Aligned_cols=253 Identities=19% Similarity=0.169 Sum_probs=218.1
Q ss_pred CcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcccc
Q 040238 196 GTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLI 275 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~ 275 (549)
....++..+..+.. +|..+ .+++++|+|++|.+.+..+..+..+. +|++|++++|.+++..+.. +.
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~----------~~ 120 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGA----------FN 120 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTT----------TT
T ss_pred CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhh----------cc
Confidence 34567777777763 45433 26899999999999977777776655 8999999999998766554 47
Q ss_pred CCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 276 NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 276 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
++++|++|++++|+++...+..|..+++|++|++++|.+..+.+..+ ..+++|+.|++++|+..+.++...|..+++|
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 89999999999999998888889999999999999999998866555 8899999999999887888888888888888
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEE
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 435 (549)
+.|++++|.+++. | .+..+++|++|++++|.+.+..|..|.++++|+.|++++|++++..|..|..+++|+.|
T Consensus 199 -----~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 199 -----KYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp -----CEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred -----CEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 9999999999865 3 48899999999999999998889999999999999999999999999999999999999
Q ss_pred ecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040238 436 NVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 436 ~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
++++|++++..+.. ..+..++.+.+.+||+.|+|.+
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999765543 3466777888999999998864
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.4e-27 Score=228.12 Aligned_cols=279 Identities=21% Similarity=0.212 Sum_probs=168.9
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
+.++.+++.++.+|..+ .++|++|++++|.++...+..|. .+++|++|++++|.+....
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~----------------- 68 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKG----------------- 68 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEE-----------------
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCccc-----------------
Confidence 45666666666666543 25677777777777644344455 6677777777766654221
Q ss_pred ccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcC
Q 040238 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTI 260 (549)
Q Consensus 181 L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 260 (549)
..+..+..+++|++|++++|.+. .+|..+.... +|++|++++|.+++..
T Consensus 69 -----------------------------~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~-~L~~L~l~~n~l~~~~ 117 (306)
T 2z66_A 69 -----------------------------CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE-QLEHLDFQHSNLKQMS 117 (306)
T ss_dssp -----------------------------EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCT-TCCEEECTTSEEESST
T ss_pred -----------------------------CcccccccccccCEEECCCCccc-cChhhcCCCC-CCCEEECCCCcccccc
Confidence 11223344455555555555554 3333333322 5555555555554332
Q ss_pred CCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCccccc-ccCCCCCccCCCCCceeeCCCCc
Q 040238 261 PNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYG-IIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 261 ~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+ ..+++|++|++++|+
T Consensus 118 ~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 118 EF---------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQ 186 (306)
T ss_dssp TT---------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSC
T ss_pred cc---------hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH--hhCcCCCEEECCCCC
Confidence 20 123455566666666666655555555566666666666666554 233333 556666666666666
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCC-CCCEeeCCCCcc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLP-NLESLDLSNNKF 418 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 418 (549)
+.+..| ..+..+++| +.|++++|.+++..+..|..+++|++|++++|++.+..|..+..++ +|+.|++++|++
T Consensus 187 l~~~~~-~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 187 LEQLSP-TAFNSLSSL-----QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCEECT-TTTTTCTTC-----CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cCCcCH-HHhcCCCCC-----CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 554333 335555555 6777777777777777788999999999999999988888898885 999999999999
Q ss_pred cccCC--cCccCCCCCcEEecccCcCcccCCC
Q 040238 419 SGQIP--QQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 419 ~~~~~--~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
++..+ .....+...+.+.+..+.+.|..|.
T Consensus 261 ~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 261 ACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp ECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 85432 1122234455666677777777664
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=236.38 Aligned_cols=253 Identities=19% Similarity=0.189 Sum_probs=217.2
Q ss_pred CcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcccc
Q 040238 196 GTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLI 275 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~ 275 (549)
....++..+..+. .+|..+. ++++.|+|++|.+.+..+..+..+. +|++|+|++|.+++..+.. +.
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~----------~~ 109 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGA----------FN 109 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGG----------GT
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhh----------cc
Confidence 3456777777776 4554443 6899999999999976666666655 8999999999998665443 57
Q ss_pred CCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 276 NCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 276 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
++++|++|++++|+++...+..|..+++|++|++++|.+..+.+..+ ..+++|+.|++++|+..+.++...|..+++|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 89999999999999998877789999999999999999998866555 8899999999999887888888889888888
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEE
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFF 435 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 435 (549)
+.|++++|.++.. | .+..+++|++|++++|++++..|..|.++++|+.|++++|++++..+..|..+++|+.|
T Consensus 188 -----~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 188 -----RYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp -----CEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred -----CeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 9999999999854 4 48899999999999999998889999999999999999999999999999999999999
Q ss_pred ecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040238 436 NVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 436 ~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
++++|++++..+.. ..+..++.+.+.+||+.|+|.+
T Consensus 261 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp ECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999766543 4466778888999999998854
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.2e-28 Score=235.60 Aligned_cols=227 Identities=21% Similarity=0.236 Sum_probs=182.7
Q ss_pred cceeecccCCC-CCcCchhhh-------cCCCCCeEeCcCCcCCCcCCcchh-cCCCCCCeeecCCCccCCcCCCccccc
Q 040238 197 TIHYLASNNSL-TGEIPSWIC-------NLNILESLVLSHNNLSGLLPQCLG-NSSDELSVLDLQGNNFFGTIPNTFIKE 267 (549)
Q Consensus 197 L~~L~l~~n~~-~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~ 267 (549)
++.|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..++ ...++|++|++++|.+++. |..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--- 140 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL--- 140 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH---
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH---
Confidence 55566666666 335566555 789999999999999988888763 4455899999999999876 4433
Q ss_pred CCCCccccCC-----CCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccC--CCCCccCCCCCceeeCCCCcc
Q 040238 268 RRIPRSLINC-----SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIK--EPRTDCGFSKLRIIDLSNNIF 340 (549)
Q Consensus 268 ~~l~~~l~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~l~~L~~L~ls~n~l 340 (549)
..+ ++|++|++++|++.+..+..++.+++|++|++++|.+.+..+ ....+..+++|++|++++|++
T Consensus 141 -------~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 141 -------AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp -------HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred -------HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 333 899999999999998888899999999999999999766421 122337889999999999998
Q ss_pred cc--ccChhhhhccccccccccceEEccCCcCcccCc-hhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCc
Q 040238 341 IG--TLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIP-ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK 417 (549)
Q Consensus 341 ~~--~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 417 (549)
.+ .++...+..+++| +.|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|+.|++++|+
T Consensus 214 ~~~~~~~~~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 214 ETPSGVCSALAAARVQL-----QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp CCHHHHHHHHHHTTCCC-----SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred cchHHHHHHHHhcCCCC-----CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 73 3444555666666 999999999998775 56777899999999999999 7777666 899999999999
Q ss_pred ccccCCcCccCCCCCcEEecccCcCcc
Q 040238 418 FSGQIPQQLVELTFLEFFNVSDNHLTG 444 (549)
Q Consensus 418 l~~~~~~~~~~l~~L~~L~l~~N~l~~ 444 (549)
+++. |. +..+++|++|++++|++++
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9966 66 8999999999999999975
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-26 Score=225.72 Aligned_cols=211 Identities=19% Similarity=0.204 Sum_probs=140.8
Q ss_pred cCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCc
Q 040238 210 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQ 289 (549)
Q Consensus 210 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~ 289 (549)
.+|..+..+++|++|++++|.+. .+|..+..+. +|++|++++|.++ . +|..+..+++|++|++++|.
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~----------lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-A----------LPASIASLNRLRELSIRACP 161 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-C----------CCGGGGGCTTCCEEEEEEET
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-c----------CcHHHhcCcCCCEEECCCCC
Confidence 44444555666666666666665 5555554443 5666666666554 1 23334555666666666655
Q ss_pred CCCCcCcccC---------CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccccc
Q 040238 290 ISDTFPSWLG---------TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 290 l~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l 360 (549)
+.+.+|..+. ++++|++|++++|.+..+ +.. +..+++|++|++++|++.+ +|.. +..+++|
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~--l~~l~~L~~L~L~~N~l~~-l~~~-l~~l~~L----- 231 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PAS--IANLQNLKSLKIRNSPLSA-LGPA-IHHLPKL----- 231 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGG--GGGCTTCCEEEEESSCCCC-CCGG-GGGCTTC-----
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHh--hcCCCCCCEEEccCCCCCc-Cchh-hccCCCC-----
Confidence 5555554443 266666666666666522 222 3556666666666666653 3332 5555555
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++++|.+.+.+|..|..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.+++..|
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 77777777777778888888899999999998888888888888999999999999888889999999999999988877
Q ss_pred cCc
Q 040238 441 HLT 443 (549)
Q Consensus 441 ~l~ 443 (549)
.+.
T Consensus 312 ~~~ 314 (328)
T 4fcg_A 312 LQA 314 (328)
T ss_dssp GSC
T ss_pred HHH
Confidence 665
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.7e-26 Score=221.57 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=44.7
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|+.++.+++|+.+++..+.+.
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 44444455555566667788888888888888888888888888888888888877665
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.6e-25 Score=231.51 Aligned_cols=259 Identities=22% Similarity=0.228 Sum_probs=137.1
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
++|++++|.++ .+|..+. ++|++|++++|.+..+. . .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~Ls 109 (622)
T 3g06_A 43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSIF 109 (622)
T ss_dssp CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEEEC
T ss_pred cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEECc
Confidence 45566666655 3344333 55666666666555322 2 3455666666666555 2221 34555566666
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.++.++. .+.+|++|++++|.++.+|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+..
T Consensus 110 ~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 110 SNPLTHLPA-----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp SCCCCCCCC-----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC
T ss_pred CCcCCCCCC-----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCCCC
Confidence 555554433 234555555555555555542 2455555555555542 222 23445555555555554
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhc
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 241 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 241 (549)
++ ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.++ .+|..
T Consensus 176 l~----------------------------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~--- 219 (622)
T 3g06_A 176 LP----------------------------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL--- 219 (622)
T ss_dssp CC----------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---
T ss_pred Cc----------------------------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---
Confidence 33 334444444444444443 222 1355666666666665 33432
Q ss_pred CCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCC
Q 040238 242 SSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEP 321 (549)
Q Consensus 242 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 321 (549)
.++|++|++++|.+++. | ..+++|++|++++|.++. +|. .+++|+.|++++|.+..+ +..
T Consensus 220 -~~~L~~L~Ls~N~L~~l-----------p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~l-p~~ 279 (622)
T 3g06_A 220 -PSGLKELIVSGNRLTSL-----------P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRL-PES 279 (622)
T ss_dssp -CTTCCEEECCSSCCSCC-----------C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSC-CGG
T ss_pred -CCCCCEEEccCCccCcC-----------C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcC-CHH
Confidence 23566777776666532 2 234566777777776663 333 456677777777766643 222
Q ss_pred CCccCCCCCceeeCCCCccccccC
Q 040238 322 RTDCGFSKLRIIDLSNNIFIGTLP 345 (549)
Q Consensus 322 ~~~~~l~~L~~L~ls~n~l~~~~~ 345 (549)
+.++++|+.|++++|++.+..|
T Consensus 280 --l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 280 --LIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp --GGGSCTTCEEECCSCCCCHHHH
T ss_pred --HhhccccCEEEecCCCCCCcCH
Confidence 3566777777777777665444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=7.7e-28 Score=233.48 Aligned_cols=257 Identities=15% Similarity=0.154 Sum_probs=167.1
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+..+++.+.+.......+..+++|++|++++|.+.+..|+.|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls 88 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLN 88 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECC
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECc
Confidence 345667777765666667778899999999999998888899999999999999999986543 7889999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.++.++. .++|++|++++|.++.++. ..+++|++|++++|.+++..+..+. .+++|++|++++|.+..
T Consensus 89 ~n~l~~l~~------~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 89 NNYVQELLV------GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp SSEEEEEEE------CTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCE
T ss_pred CCccccccC------CCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCc
Confidence 998877663 3689999999998876653 3367889999999988876666776 78888888888888776
Q ss_pred CCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhc
Q 040238 162 FDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 241 (549)
Q Consensus 162 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 241 (549)
..+..+...... |++|++++|.+++. +. ...+++|++|++++|.+++ +|..+..
T Consensus 159 ~~~~~~~~~l~~--L~~L~L~~N~l~~~----------------------~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 212 (317)
T 3o53_A 159 VNFAELAASSDT--LEHLNLQYNFIYDV----------------------KG-QVVFAKLKTLDLSSNKLAF-MGPEFQS 212 (317)
T ss_dssp EEGGGGGGGTTT--CCEEECTTSCCCEE----------------------EC-CCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred ccHHHHhhccCc--CCEEECCCCcCccc----------------------cc-ccccccCCEEECCCCcCCc-chhhhcc
Confidence 544322212222 55555555544421 11 1124455555555555552 2323333
Q ss_pred CCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC-CCcCcccCCCCCCCEEEcc
Q 040238 242 SSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS-DTFPSWLGTLPNLNVLILR 310 (549)
Q Consensus 242 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~ 310 (549)
.. +|++|++++|.+++ +|..+..+++|++|++++|.+. +..+..+..+++|+.++++
T Consensus 213 l~-~L~~L~L~~N~l~~-----------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 213 AA-GVTWISLRNNKLVL-----------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GT-TCSEEECTTSCCCE-----------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cC-cccEEECcCCcccc-----------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 22 45555555555542 1222344555555555555554 3344444455555555554
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=7e-25 Score=229.37 Aligned_cols=261 Identities=25% Similarity=0.296 Sum_probs=138.2
Q ss_pred CCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEE
Q 040238 74 NLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALN 153 (549)
Q Consensus 74 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 153 (549)
++++|++++|.++.++... .++|++|++++|.++.+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC----CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEE
T ss_pred CCcEEEecCCCcCccChhh----CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEE
Confidence 3555555555555443321 1455555555555555554 3455555555555554 2222 234455555
Q ss_pred ccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCC
Q 040238 154 ISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG 233 (549)
Q Consensus 154 L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 233 (549)
+++|.+..++. .+++|+.|++++|.+.. +|. .+++|++|++++|.+++
T Consensus 108 Ls~N~l~~l~~----------------------------~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 108 IFSNPLTHLPA----------------------------LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS 155 (622)
T ss_dssp ECSCCCCCCCC----------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----------------------------CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC
Confidence 55554443322 22333333333333332 222 13667777777776663
Q ss_pred cCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcc
Q 040238 234 LLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNI 313 (549)
Q Consensus 234 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 313 (549)
+|.. .++|+.|++++|.+++. | ..+++|+.|++++|.+++ +|. .+++|+.|++++|.
T Consensus 156 -l~~~----~~~L~~L~L~~N~l~~l-----------~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 156 -LPAL----PSELCKLWAYNNQLTSL-----------P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNR 212 (622)
T ss_dssp -CCCC----CTTCCEEECCSSCCSCC-----------C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred -cCCc----cCCCCEEECCCCCCCCC-----------c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCc
Confidence 3331 23567777777766532 2 234666777777776664 222 23566666666666
Q ss_pred cccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCc
Q 040238 314 FYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS 393 (549)
Q Consensus 314 l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 393 (549)
+..+.. .+++|+.|++++|++ ++ +| ..+++|++|++++|.
T Consensus 213 l~~l~~------~~~~L~~L~Ls~N~L------------------------------~~-lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 213 LTSLPA------LPSGLKELIVSGNRL------------------------------TS-LP---VLPSELKELMVSGNR 252 (622)
T ss_dssp CSSCCC------CCTTCCEEECCSSCC------------------------------SC-CC---CCCTTCCEEECCSSC
T ss_pred ccccCC------CCCCCCEEEccCCcc------------------------------Cc-CC---CCCCcCcEEECCCCC
Confidence 654321 134555555555554 43 22 334566666666666
Q ss_pred cccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 394 LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 394 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|
T Consensus 253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 66 3443 4466666666666666 556666666666667777666665544
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.2e-26 Score=216.81 Aligned_cols=253 Identities=22% Similarity=0.220 Sum_probs=154.5
Q ss_pred CEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEE
Q 040238 101 KYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFD 180 (549)
Q Consensus 101 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 180 (549)
++++.+++.++.+|..+ .++|++|++++|.+++..+..+. .+++|++|++++|.+...
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~------------------ 71 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARI------------------ 71 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEE------------------
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCcccee------------------
Confidence 45556666666565433 34566666666666544444554 555666666655554432
Q ss_pred ccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCc-CCCcCCcchhcCCCCCCeeecCCCccCCc
Q 040238 181 LSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNN-LSGLLPQCLGNSSDELSVLDLQGNNFFGT 259 (549)
Q Consensus 181 L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 259 (549)
.+..+..+++|++|++++|. +....+..+..+. +|++|++++|.+++.
T Consensus 72 ------------------------------~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 72 ------------------------------DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQEL 120 (285)
T ss_dssp ------------------------------CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT-TCCEEECTTSCCCCC
T ss_pred ------------------------------CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc-CCCEEECCCCcCCEE
Confidence 22344555666666666665 4433344443333 666677766666654
Q ss_pred CCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCc
Q 040238 260 IPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNI 339 (549)
Q Consensus 260 ~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 339 (549)
.+.. +..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|+
T Consensus 121 ~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 121 GPGL----------FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNR 188 (285)
T ss_dssp CTTT----------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSC
T ss_pred CHhH----------hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh--cCccccCEEECCCCc
Confidence 3332 3567777777887777776666667777888888888887776644433 455666666665555
Q ss_pred cccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 340 FIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 340 l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+. +..|..|..+++|++|++++|.+++..++.+..+++|+.|++++|++.
T Consensus 189 l~------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 189 VA------------------------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CC------------------------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cc------------------------------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 43 344556677778888888888887666666778888888888888776
Q ss_pred ccCCcCccCCCCCcEEecccCcCcccCCCC
Q 040238 420 GQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449 (549)
Q Consensus 420 ~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 449 (549)
...+.. .-...++.+..+.+.+.|..|..
T Consensus 239 c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 239 CDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 433211 11233555566777777777743
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.5e-28 Score=260.37 Aligned_cols=422 Identities=16% Similarity=0.083 Sum_probs=289.0
Q ss_pred CcEEECCCCCC---CCccccccc------------CCCCCCEEEccCCcCCccccccccC-CCC-CCEEeCCCCcCcccc
Q 040238 1 LQFLYLRLNNF---SGDLLGSIG------------NLRSLEAIHIAKCNVSGQITSSLRN-LSQ-LFFLDLAKNSYRGTI 63 (549)
Q Consensus 1 L~~L~Ls~n~l---~~~~~~~~~------------~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~-L~~L~Ls~n~i~~~~ 63 (549)
|++|+|+++.. .+.+|..++ .+++|++|+|++|.+.+..+..+.. +++ |++|++++|.-....
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~ 154 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHH
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHH
Confidence 68899988642 123333332 7899999999999988776666665 444 999999998721111
Q ss_pred CchhhcCCCCCCCeEeccCCccceeecc---CCCcCCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCC
Q 040238 64 KLDVLLTSWKNLEFLALSLNRLSVLTKA---TSNTTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQG 135 (549)
Q Consensus 64 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~ 135 (549)
....+...+++|++|++++|.++..+.. .....+++|++|++++|.++. ++..+..+++|++|++++|.+.+
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 1121346889999999999965433211 011267899999999999863 33456788999999999999874
Q ss_pred CCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC---CCCCcceeecccCCCCCcCc
Q 040238 136 KVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV---PPPGTIHYLASNNSLTGEIP 212 (549)
Q Consensus 136 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~ 212 (549)
++..+. .+++|++|+++..................++|+.++++++... .+|. .+++|++|++++|.+.+...
T Consensus 235 -l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 235 -LVGFFK--AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp -GHHHHH--HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred -HHHHHh--hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 667777 8999999999864322111111111122234999999886332 2222 27799999999999765444
Q ss_pred -hhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCC-----------CccCCcCCCcccccCCCCccccCCCCC
Q 040238 213 -SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQG-----------NNFFGTIPNTFIKERRIPRSLINCSKL 280 (549)
Q Consensus 213 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~~~~~~~l~~~l~~~~~L 280 (549)
..+..+++|++|+++ +.+.+.....+....++|++|++++ +.+++.. ++.....+++|
T Consensus 311 ~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~---------~~~l~~~~~~L 380 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG---------LIALAQGCQEL 380 (592)
T ss_dssp HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH---------HHHHHHHCTTC
T ss_pred HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH---------HHHHHhhCccC
Confidence 446789999999999 4444333334444455899999993 4444221 12223568999
Q ss_pred cEEEccCCcCCCCcCcccCC-CCCCCEEEcc----CcccccccCC---CCCccCCCCCceeeCCCCc--cccccChhhhh
Q 040238 281 EFLGLGNNQISDTFPSWLGT-LPNLNVLILR----SNIFYGIIKE---PRTDCGFSKLRIIDLSNNI--FIGTLPLKSFL 350 (549)
Q Consensus 281 ~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~~---~~~~~~l~~L~~L~ls~n~--l~~~~~~~~~~ 350 (549)
++|+++.|.+++..+..+.. +++|++|+++ .|.+++.+.. ...+.++++|+.|++++|. +++........
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 99999999998776666655 8999999997 5555543110 0113568999999998654 44433333333
Q ss_pred ccccccccccceEEccCCcCccc-CchhhcCCCCCCEEEccCCccccC-CCcccCCCCCCCEeeCCCCcccccCCcCc-c
Q 040238 351 CWNAMKIVNTTGIILSNNSFDSV-IPASIANLKGLQVLNLQNNSLQGH-IPSCLGNLPNLESLDLSNNKFSGQIPQQL-V 427 (549)
Q Consensus 351 ~l~~l~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 427 (549)
.+++| +.|++++|.+++. .+..+.++++|++|++++|.+++. ++..+..+++|+.|++++|+++......+ .
T Consensus 461 ~~~~L-----~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~ 535 (592)
T 3ogk_B 461 YSPNV-----RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535 (592)
T ss_dssp SCTTC-----CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred hCccc-----eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH
Confidence 35555 9999999999863 455668899999999999998754 34455678999999999999986543333 3
Q ss_pred CCCCCcEEecccCc
Q 040238 428 ELTFLEFFNVSDNH 441 (549)
Q Consensus 428 ~l~~L~~L~l~~N~ 441 (549)
.++.+....+..++
T Consensus 536 ~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 536 ARPYWNIELIPSRR 549 (592)
T ss_dssp CCTTEEEEEECCC-
T ss_pred hCCCcEEEEecCcc
Confidence 56777777766553
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.6e-26 Score=220.38 Aligned_cols=219 Identities=22% Similarity=0.133 Sum_probs=155.7
Q ss_pred CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcc
Q 040238 194 PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRS 273 (549)
Q Consensus 194 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 273 (549)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +.. .++|++|++++|.+++.
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~-l~~L~~L~Ls~n~l~~l-------------- 95 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES-LSTLRTLDLNNNYVQEL-------------- 95 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETT-CTTCCEEECCSSEEEEE--------------
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhh-cCCCCEEECcCCccccc--------------
Confidence 4566666677777766667778888888888888888775443 333 34788888888877642
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccc
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWN 353 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~ 353 (549)
...++|++|++++|++++..+. .+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+...+..++
T Consensus 96 -~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 96 -LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp -EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred -cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 2346788888888887765443 35678888888888877655444 66778888888888877655544444555
Q ss_pred cccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCc
Q 040238 354 AMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433 (549)
Q Consensus 354 ~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 433 (549)
.+ +.|++++|.+++..+ ...+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+
T Consensus 170 ~L-----~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 170 TL-----EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp TC-----CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred cC-----CEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 55 888888888876522 2347888888888888884 4444777888888888888888 4667777888888
Q ss_pred EEecccCcCcc
Q 040238 434 FFNVSDNHLTG 444 (549)
Q Consensus 434 ~L~l~~N~l~~ 444 (549)
.|++++|+++|
T Consensus 241 ~L~l~~N~~~~ 251 (317)
T 3o53_A 241 HFDLRGNGFHC 251 (317)
T ss_dssp EEECTTCCCBH
T ss_pred EEEccCCCccC
Confidence 88888888874
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.8e-24 Score=201.76 Aligned_cols=207 Identities=22% Similarity=0.254 Sum_probs=172.9
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
..+.++++++.++ .+|..+. +++++|++++|.+++..+.. +..+++|++|++++|.++...+..|.
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKA----------FHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTS----------SSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHH----------hcCCCCCCEEECCCCccCeeChhhhc
Confidence 4678888888888 5665443 47889999999887654433 47788999999999998877667778
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|++.+ ++...|..+++| +.|++++|.+++..+..|.
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L-----~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLKS-LPPRVFDSLTKL-----TYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCCC-CCTTTTTTCTTC-----CEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccCe-eCHHHhCcCcCC-----CEEECCCCcCCccCHhHcc
Confidence 88999999999998887765544 778899999999998864 455567777777 8999999999988888899
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
.+++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999999999999999977777899999999999999999977777899999999999999999998864
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7.3e-26 Score=232.18 Aligned_cols=234 Identities=25% Similarity=0.251 Sum_probs=115.5
Q ss_pred CccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceee
Q 040238 122 HLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYL 201 (549)
Q Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~ 201 (549)
+|++|++++|.+++..|..|. .+++|+.|++++|.+.+..+ +... ++|+.|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~---l~~l--~~L~~L~Ls~N~l~-------------- 93 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD---LESL--STLRTLDLNNNYVQ-------------- 93 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE---CTTC--TTCCEEECCSSEEE--------------
T ss_pred CccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc---cccC--CCCCEEEecCCcCC--------------
Confidence 677777777777766666666 67777777777766553222 0111 11333333333222
Q ss_pred cccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCc
Q 040238 202 ASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLE 281 (549)
Q Consensus 202 l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~ 281 (549)
+. ...++|++|++++|.+.+..+.. .++|+.|++++|.+++..|.. +..+++|+
T Consensus 94 -------~l-----~~~~~L~~L~L~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~ 147 (487)
T 3oja_A 94 -------EL-----LVGPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLD----------EGCRSRVQ 147 (487)
T ss_dssp -------EE-----EECTTCCEEECCSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBC----------GGGGSSEE
T ss_pred -------CC-----CCCCCcCEEECcCCcCCCCCccc----cCCCCEEECCCCCCCCCCchh----------hcCCCCCC
Confidence 10 01244555555555554332221 124555555555554433222 23444555
Q ss_pred EEEccCCcCCCCcCcccC-CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccccc
Q 040238 282 FLGLGNNQISDTFPSWLG-TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 282 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l 360 (549)
+|++++|.+++..|..+. .+++|++|+|++|.+++..+. ..+++|+.|++
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~L------------------------- 198 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDL------------------------- 198 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEEC-------------------------
T ss_pred EEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc----ccCCCCCEEEC-------------------------
Confidence 555555555544444443 344455555555544443211 12333333333
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc-ccCCcCccCCCCCcEEecc
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS-GQIPQQLVELTFLEFFNVS 438 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 438 (549)
++|.+++..+ .|..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 199 -----s~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 199 -----SSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -----CSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 3333333222 25556666666666666663 4555666666666666666665 4455555556666666554
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.4e-24 Score=204.68 Aligned_cols=211 Identities=21% Similarity=0.189 Sum_probs=132.3
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
+|++|++++|.+.+..+..+.... +|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+.
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGA----------YQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTT----------TTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHH----------ccCCcCCCEEECCCCccCccChhhhc
Confidence 345555555555433332333222 4555555555544332222 24455555555555555555445555
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccc-cChhhhhccccccccccceEEccCCcCcccCchhh
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGT-LPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI 378 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~ 378 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|++.+. +| ..+..+++| +.|++++|.+++..+..|
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L-----~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLP-EYFSNLTNL-----EHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCC-GGGGGCTTC-----CEEECCSSCCCEECGGGG
T ss_pred CCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCc-hhhccCCCC-----CEEECCCCCCCcCCHHHh
Confidence 55556666665555555433332 4556666666666655432 23 335555555 677777777777666667
Q ss_pred cCCCCCC----EEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCC
Q 040238 379 ANLKGLQ----VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGK 450 (549)
Q Consensus 379 ~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 450 (549)
..+++|+ +|++++|.+.+..+..+. ..+|+.|++++|++++..+..|..+++|+.|++++|+++|.+|...
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred hhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 6666666 899999999966655554 4589999999999997777778999999999999999999988543
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.7e-26 Score=219.29 Aligned_cols=246 Identities=24% Similarity=0.273 Sum_probs=195.1
Q ss_pred CCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCC-CcCCcchh-------cCCCCCCeeecCCCccCCcCCCcccc
Q 040238 195 PGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS-GLLPQCLG-------NSSDELSVLDLQGNNFFGTIPNTFIK 266 (549)
Q Consensus 195 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~~~ 266 (549)
++|+.+++.+|.+ .+|..+... |+.|++++|.+. ..+|..+. .. ++|++|++++|.+++..|..+.
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~- 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLL- 116 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSS-
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHH-
Confidence 3566677777777 567666554 899999999984 45565543 33 4899999999999977665430
Q ss_pred cCCCCccccCCCCCcEEEccCCcCCCCcCcccCCC-----CCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccc
Q 040238 267 ERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL-----PNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFI 341 (549)
Q Consensus 267 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~ 341 (549)
+..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..+ .++++|++|++++|++.
T Consensus 117 -------~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 117 -------EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPEL 186 (312)
T ss_dssp -------SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTC
T ss_pred -------HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcC
Confidence 27789999999999999987 7777766 899999999999998876666 78999999999999987
Q ss_pred cccC--hh-hhhccccccccccceEEccCCcCcc---cCchhhcCCCCCCEEEccCCccccCCC-cccCCCCCCCEeeCC
Q 040238 342 GTLP--LK-SFLCWNAMKIVNTTGIILSNNSFDS---VIPASIANLKGLQVLNLQNNSLQGHIP-SCLGNLPNLESLDLS 414 (549)
Q Consensus 342 ~~~~--~~-~~~~l~~l~~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~ 414 (549)
+.++ .. .+..+++| +.|++++|.+++ .....+..+++|++|++++|++.+.+| ..+..+++|+.|+++
T Consensus 187 ~~~~~~~~~~~~~l~~L-----~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 187 GERGLISALCPLKFPTL-----QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp HHHHHHHHSCTTSCTTC-----CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred cchHHHHHHHhccCCCC-----CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 6532 11 22555656 999999999984 233456788999999999999997764 567778999999999
Q ss_pred CCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCC
Q 040238 415 NNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSG 465 (549)
Q Consensus 415 ~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 465 (549)
+|+++ .+|..+. ++|++|++++|++++. |....++.++.+.+.+|+.
T Consensus 262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred CCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 99999 7777766 8999999999999977 6566667777777777754
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=229.93 Aligned_cols=220 Identities=22% Similarity=0.122 Sum_probs=179.3
Q ss_pred CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcc
Q 040238 194 PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRS 273 (549)
Q Consensus 194 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~ 273 (549)
+++|++|++++|.+.+..|..|..+++|++|+|++|.+++..| +.. .++|++|++++|.+++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~-l~~L~~L~Ls~N~l~~l~------------- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LES-LSTLRTLDLNNNYVQELL------------- 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTT-CTTCCEEECCSSEEEEEE-------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--ccc-CCCCCEEEecCCcCCCCC-------------
Confidence 4466677777777777777889999999999999999886555 444 448999999999887532
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccc
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWN 353 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~ 353 (549)
..++|++|++++|.+++..+. .+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.+..|......++
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 237899999999999876554 45789999999999988866655 77899999999999998877765444677
Q ss_pred cccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCc
Q 040238 354 AMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLE 433 (549)
Q Consensus 354 ~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 433 (549)
.| +.|++++|.+++..+ +..+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+
T Consensus 170 ~L-----~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 240 (487)
T 3oja_A 170 TL-----EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (487)
T ss_dssp TC-----CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred cc-----cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCC
Confidence 77 999999999987733 3468999999999999996544 58899999999999999995 777899999999
Q ss_pred EEecccCcCccc
Q 040238 434 FFNVSDNHLTGL 445 (549)
Q Consensus 434 ~L~l~~N~l~~~ 445 (549)
.|++++|++.|.
T Consensus 241 ~L~l~~N~l~c~ 252 (487)
T 3oja_A 241 HFDLRGNGFHCG 252 (487)
T ss_dssp EEECTTCCBCHH
T ss_pred EEEcCCCCCcCc
Confidence 999999999844
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.9e-28 Score=259.69 Aligned_cols=403 Identities=13% Similarity=0.057 Sum_probs=178.0
Q ss_pred ccccCCCCCCEEEccCCcCCc---cc------------cccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 17 GSIGNLRSLEAIHIAKCNVSG---QI------------TSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 17 ~~~~~l~~L~~L~Ls~n~~~~---~~------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
..+.++++|++|++++|.... .. +..+..+++|++|++++|.+.+..+.. +...+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL-IAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH-HHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH-HHHhCCCCcEEeCC
Confidence 345566666666666653211 00 111234566666666666665444333 12246666666666
Q ss_pred CC-ccceeeccCCCcCCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCCCCCCccccc--ccCCCCcEEE
Q 040238 82 LN-RLSVLTKATSNTTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQGKVPKWLLD--PNMQNLNALN 153 (549)
Q Consensus 82 ~n-~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~ 153 (549)
+| .++..+.......+++|++|++++|.++. ++.....+++|++|++++|. .......+.. ..+++|++|+
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEE
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEe
Confidence 66 22211111111145666666666665522 22222345566666666665 1111111110 1346666666
Q ss_pred ccCCcCCCCCCccccccCCCCCccEEEccCCcC-------CCCC--CCCCCCccee-ecccCCCCCcCchhhhcCCCCCe
Q 040238 154 ISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNL-------QGPL--PVPPPGTIHY-LASNNSLTGEIPSWICNLNILES 223 (549)
Q Consensus 154 L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~--~~~~~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~ 223 (549)
+++|......+. ...... +|+.|+++.+.. .+.. -..+++|+.+ .+.+. ..+.++..+..+++|++
T Consensus 218 L~~~~~~~~l~~-~~~~~~--~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 218 LNRAVPLEKLAT-LLQRAP--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTT 293 (594)
T ss_dssp CCTTSCHHHHHH-HHHHCT--TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCE
T ss_pred cCCCCcHHHHHH-HHhcCC--cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCE
Confidence 666521111111 111122 266666544321 0000 0113444444 22211 11233334445566666
Q ss_pred EeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccC---------CcCCCCc
Q 040238 224 LVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN---------NQISDTF 294 (549)
Q Consensus 224 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~---------n~l~~~~ 294 (549)
|++++|.+.+.....+....++|++|++++| ++.. .++.....+++|++|++.+ +.+++..
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~---------~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA---------GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH---------HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH---------HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 6666665443322222223345666666655 2211 0111122355666666522 2333222
Q ss_pred CcccC-CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCC--C----CccccccC-hh----hhhccccccccccce
Q 040238 295 PSWLG-TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLS--N----NIFIGTLP-LK----SFLCWNAMKIVNTTG 362 (549)
Q Consensus 295 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls--~----n~l~~~~~-~~----~~~~l~~l~~~~l~~ 362 (549)
...+. .+++|+.|.++.|.+++...... ...+++|+.|+++ + +.++ ..| .. .+..+++| +.
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L-----~~ 436 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITI-ARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDL-----RR 436 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHH-HHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTC-----CE
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHH-HhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCc-----cE
Confidence 11221 25566666555555543221111 0135566666665 2 2222 111 11 12223333 56
Q ss_pred EEccCCcCcccCchhhcC-CCCCCEEEccCCccccCCCccc-CCCCCCCEeeCCCCcccccCCc-CccCCCCCcEEeccc
Q 040238 363 IILSNNSFDSVIPASIAN-LKGLQVLNLQNNSLQGHIPSCL-GNLPNLESLDLSNNKFSGQIPQ-QLVELTFLEFFNVSD 439 (549)
Q Consensus 363 L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 439 (549)
|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|++++.... ....+++|+.|++++
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 66655 444443333333 5666666666666654333333 4456666666666666433222 233456666666666
Q ss_pred CcCc
Q 040238 440 NHLT 443 (549)
Q Consensus 440 N~l~ 443 (549)
|+++
T Consensus 516 ~~~~ 519 (594)
T 2p1m_B 516 CSVS 519 (594)
T ss_dssp SCCB
T ss_pred CCCC
Confidence 6653
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=7.9e-28 Score=254.87 Aligned_cols=417 Identities=13% Similarity=0.088 Sum_probs=274.8
Q ss_pred CcEEECCCCCCCCc---cc------------ccccCCCCCCEEEccCCcCCcccccccc-CCCCCCEEeCCCC-cCcccc
Q 040238 1 LQFLYLRLNNFSGD---LL------------GSIGNLRSLEAIHIAKCNVSGQITSSLR-NLSQLFFLDLAKN-SYRGTI 63 (549)
Q Consensus 1 L~~L~Ls~n~l~~~---~~------------~~~~~l~~L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~~ 63 (549)
|++|+++++..... .| .....+++|++|+|++|.+.+..+..+. .+++|++|++++| .+....
T Consensus 68 L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 147 (594)
T 2p1m_B 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147 (594)
T ss_dssp CCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH
T ss_pred ceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH
Confidence 67899998753211 11 2235789999999999998877666665 7899999999998 454321
Q ss_pred CchhhcCCCCCCCeEeccCCccceeeccCC---CcCCCCCCEEEccCCCCCCCC-----hhhcCCCCccEEEeecC-cCC
Q 040238 64 KLDVLLTSWKNLEFLALSLNRLSVLTKATS---NTTSQKLKYIGLRSCNLTKFP-----NFLQNQYHLLVLDLSDN-RIQ 134 (549)
Q Consensus 64 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~---~~~~~~L~~L~l~~n~l~~l~-----~~l~~l~~L~~L~l~~n-~l~ 134 (549)
... ++.++++|++|++++|.++..+.... ...+++|++|++++|. ..++ .....+++|++|++++| .+.
T Consensus 148 l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 148 LAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 222 35689999999999997655332211 1257899999999997 3332 23455799999999998 343
Q ss_pred CCCCcccccccCCCCcEEEccCCcC-------CCCCCccccccCCCCCccEE-EccCCcCCCCCCC---CCCCcceeecc
Q 040238 135 GKVPKWLLDPNMQNLNALNISHNFL-------TGFDQHLVVLPANKGDLLTF-DLSSNNLQGPLPV---PPPGTIHYLAS 203 (549)
Q Consensus 135 ~~~~~~~~~~~l~~L~~L~L~~n~~-------~~~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~---~~~~L~~L~l~ 203 (549)
.++..+. .+++|++|+++.+.. .+.... ...+ ++|+.+ .+..... ..++. .+++|++|+++
T Consensus 226 -~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~~--l~~~--~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 226 -KLATLLQ--RAPQLEELGTGGYTAEVRPDVYSGLSVA--LSGC--KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp -HHHHHHH--HCTTCSEEECSBCCCCCCHHHHHHHHHH--HHTC--TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECT
T ss_pred -HHHHHHh--cCCcceEcccccccCccchhhHHHHHHH--HhcC--CCcccccCCcccch-hhHHHHHHhhCCCCEEEcc
Confidence 3566666 889999999776532 111111 1222 237777 3333221 12222 26789999999
Q ss_pred cCCCCCcCc-hhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCC---------ccCCcCCCcccccCCCCcc
Q 040238 204 NNSLTGEIP-SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGN---------NFFGTIPNTFIKERRIPRS 273 (549)
Q Consensus 204 ~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n---------~l~~~~~~~~~~~~~l~~~ 273 (549)
+|.+.+... ..+..+++|++|++++| +.+.....+....++|++|++.++ .+++.. +...
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~---------l~~l 367 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG---------LVSV 367 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH---------HHHH
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH---------HHHH
Confidence 888765433 33567899999999988 443333334443458999999542 332211 1111
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccC-CCCCCCEEEcc--C----cccccccCC---CCCccCCCCCceeeCCCCccccc
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLG-TLPNLNVLILR--S----NIFYGIIKE---PRTDCGFSKLRIIDLSNNIFIGT 343 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~---~~~~~~l~~L~~L~ls~n~l~~~ 343 (549)
...+++|++|++..|.+++.....+. .+++|+.|+++ + +.++..... ...+..+++|+.|++++ .+.+.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 23589999999999998866555554 58999999999 3 344321100 00135688999999987 55443
Q ss_pred cChhhhhccccccccccceEEccCCcCcccCchhh-cCCCCCCEEEccCCccccCCCc-ccCCCCCCCEeeCCCCccccc
Q 040238 344 LPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASI-ANLKGLQVLNLQNNSLQGHIPS-CLGNLPNLESLDLSNNKFSGQ 421 (549)
Q Consensus 344 ~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 421 (549)
........+++| +.|++++|.+++..+..+ .++++|++|++++|.+++.... .+..+++|+.|++++|+++..
T Consensus 447 ~~~~l~~~~~~L-----~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 447 VFEYIGTYAKKM-----EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHHHHHCTTC-----CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred HHHHHHHhchhc-----cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 332222224555 999999999987655555 6799999999999999654333 455689999999999999654
Q ss_pred CCcCc-cCCCCCcEEecccCcCc
Q 040238 422 IPQQL-VELTFLEFFNVSDNHLT 443 (549)
Q Consensus 422 ~~~~~-~~l~~L~~L~l~~N~l~ 443 (549)
....+ ..++.|+...+..+.-.
T Consensus 522 ~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 522 ACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHHHHHhCCCCEEEEecCCCcc
Confidence 33334 45788877777766443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.3e-23 Score=198.76 Aligned_cols=207 Identities=23% Similarity=0.308 Sum_probs=170.0
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
+..++++++++++++.++ .+|..+. +.+++|++++|.+++..+. .+..+++|++|++++|.+++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLA----------TLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGG----------GGTTCTTCCEEECTTSCCCEEE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHH----------HhhcCCCCCEEECCCCccCccc
Confidence 556788888999888887 5665543 4788999999988765443 3477889999999999888654
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~ 374 (549)
+ ...+++|++|++++|.+..+.. .+..+++|++|++++|++. .++.+.|..+++| +.|++++|.+++..
T Consensus 72 ~--~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L-----~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 72 V--DGTLPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT-SLPLGALRGLGEL-----QELYLKGNELKTLP 140 (290)
T ss_dssp C--CSCCTTCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTC-----CEEECTTSCCCCCC
T ss_pred C--CCCCCcCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCc-ccCHHHHcCCCCC-----CEEECCCCCCCccC
Confidence 3 2678899999999998875532 2367889999999999887 4555667777777 89999999999888
Q ss_pred chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+....+|+.+++++|+|.|.+.
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 888999999999999999999777777899999999999999999 778888888999999999999998764
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-22 Score=192.40 Aligned_cols=205 Identities=20% Similarity=0.241 Sum_probs=176.0
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
..+.++++++.++. +|. .+ .+++++|++++|++++..+..|..+++|++|++++|.+..+.+..+
T Consensus 17 ~~~~l~~~~~~l~~-ip~----------~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~-- 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPS----------NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF-- 81 (270)
T ss_dssp TTTEEECTTSCCSS-CCS----------CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--
T ss_pred CCCEEEccCCCCCc-cCC----------CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--
Confidence 57899999999974 332 22 2689999999999998877889999999999999999987765544
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
..+++|++|++++|++. .++...|..+++| +.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..
T Consensus 82 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQ-ALPIGVFDQLVNL-----AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp SSCTTCCEEECCSSCCC-CCCTTTTTTCSSC-----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCCCCEEECCCCcCC-cCCHhHcccccCC-----CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 78999999999999987 4666777888777 99999999999999899999999999999999999777777999
Q ss_pred CCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC-CCCCCccCCCccCCCCCCCCCC
Q 040238 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP-GKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+++|+.|++++|++++..+..|..+++|++|++++|++++..+. ...+..++.+.+.+||+.|+++
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 99999999999999987777899999999999999999976553 2345677778888888888764
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.9e-23 Score=195.44 Aligned_cols=204 Identities=23% Similarity=0.195 Sum_probs=173.5
Q ss_pred CCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCC
Q 040238 243 SDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPR 322 (549)
Q Consensus 243 ~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 322 (549)
.+++++++++++.++.. |..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.++...
T Consensus 9 l~~l~~l~~~~~~l~~i-----------p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTAL-----------PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp STTCCEEECTTSCCSSC-----------CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--
T ss_pred cCCccEEECCCCCCCcC-----------CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--
Confidence 34799999999999743 2222 26899999999999988888999999999999999999887553
Q ss_pred CccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCccc
Q 040238 323 TDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCL 402 (549)
Q Consensus 323 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 402 (549)
..+++|+.|++++|++. .+|. .+..++++ +.|++++|++++..+..|..+++|++|++++|++++..+..|
T Consensus 74 --~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L-----~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQ-SLPL-LGQTLPAL-----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp --SCCTTCCEEECCSSCCS-SCCC-CTTTCTTC-----CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred --CCCCcCCEEECCCCcCC-cCch-hhccCCCC-----CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 57899999999999987 5553 35666666 999999999999888999999999999999999998878889
Q ss_pred CCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 403 GNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 403 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
..+++|+.|++++|++++..+..|..+++|+.|++++|+++...+.......+..+.+.+||+.|+|.
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence 99999999999999999777777889999999999999999554444445566777888999988764
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=4.8e-23 Score=195.73 Aligned_cols=225 Identities=20% Similarity=0.205 Sum_probs=183.7
Q ss_pred eEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCC
Q 040238 223 SLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLP 302 (549)
Q Consensus 223 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 302 (549)
..+..+..+. .+|..+ +++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+..++
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYS----------FFSFPELQVLDLSRCEIQTIEDGAYQSLS 76 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTT----------TTTCTTCSEEECTTCCCCEECTTTTTTCT
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhH----------hccccCCcEEECCCCcCCccCHHHccCCc
Confidence 3455555555 566644 347999999999998765443 47899999999999999988888899999
Q ss_pred CCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCccc-CchhhcCC
Q 040238 303 NLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSV-IPASIANL 381 (549)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~-~~~~~~~l 381 (549)
+|++|++++|.+.+..+..+ .++++|++|++++|++.+. +...+..+++| +.|++++|.+++. +|..|..+
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L-----~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASL-ENFPIGHLKTL-----KELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp TCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTSCCCCS-TTCCCTTCTTC-----CEEECCSSCCCCCCCCGGGGGC
T ss_pred CCCEEECCCCccCccChhhh--cCCccccEEECCCCCcccc-CchhcccCCCC-----CEEECcCCccceecCchhhccC
Confidence 99999999999998876655 7899999999999998754 33346666666 9999999999875 58899999
Q ss_pred CCCCEEEccCCccccCCCcccCCCCCCC----EeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccC
Q 040238 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLE----SLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFD 456 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~ 456 (549)
++|++|++++|++++..+..+..+++|+ .|++++|++++..+..+. ..+|+.|++++|++++..+.. ..+..++
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccccccc
Confidence 9999999999999987777887777777 899999999976665554 458999999999999765543 4466777
Q ss_pred CCccCCCCCCCCCC
Q 040238 457 NTSFDSNSGLCGRP 470 (549)
Q Consensus 457 ~~~~~~n~~lc~~~ 470 (549)
.+.+.+|++.|+++
T Consensus 228 ~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 228 KIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCcccccCC
Confidence 88888888888765
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=3.2e-23 Score=200.30 Aligned_cols=212 Identities=20% Similarity=0.183 Sum_probs=167.0
Q ss_pred cCCCCCeEeCcCCcCCCcCCcchh-cCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC
Q 040238 217 NLNILESLVLSHNNLSGLLPQCLG-NSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295 (549)
Q Consensus 217 ~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~ 295 (549)
.+++|++|++++|.+.+..|..+. ...++|++|++++|.+++..+..- ...+..+++|++|++++|++.+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------~~~~~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------ELQQWLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH------HHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH------HHHhhhccCCCEEEeeCCCcchhhH
Confidence 457799999999999988888773 334489999999999986443110 0223568999999999999998888
Q ss_pred cccCCCCCCCEEEccCcccccc--cCCCCCccCCCCCceeeCCCCcccc--ccChhhhhccccccccccceEEccCCcCc
Q 040238 296 SWLGTLPNLNVLILRSNIFYGI--IKEPRTDCGFSKLRIIDLSNNIFIG--TLPLKSFLCWNAMKIVNTTGIILSNNSFD 371 (549)
Q Consensus 296 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~l~~l~~~~l~~L~l~~n~l~ 371 (549)
..++.+++|++|++++|++.+. .+....+..+++|++|++++|++.. ..+...+..+++| +.|++++|.++
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L-----~~L~Ls~N~l~ 237 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP-----HSLDLSHNSLR 237 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCC-----SSEECTTSCCC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCC-----CEEECCCCCCC
Confidence 8999999999999999997653 1122223678999999999999852 1222234566666 99999999999
Q ss_pred ccCchhhcCC---CCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcc
Q 040238 372 SVIPASIANL---KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTG 444 (549)
Q Consensus 372 ~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 444 (549)
+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 238 ~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 238 ATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9878777766 69999999999999 6677664 8999999999999954 43 6788999999999999873
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.5e-23 Score=194.13 Aligned_cols=204 Identities=20% Similarity=0.271 Sum_probs=142.3
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
...+++|+.|++++|.+. .++ .+..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l-~~L~~L~l~~n~l~~~------------~~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYL-PNVRYLALGGNKLHDI------------SALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECTTSCCCCC------------GGGTTCTTCCEEECTTSCCCCCC
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccC-CCCcEEECCCCCCCCc------------hhhcCCCCCCEEECCCCccCccC
Confidence 456777888888887776 233 23333 3788888888777642 13467778888888888887766
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~ 374 (549)
+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|++. .++...+..+++| +.|++++|.+++..
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L-----~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNL-----TELDLSYNQLQSLP 173 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTTCTTC-----CEEECCSSCCCCCC
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECCCCccC-ccCHHHhccCccC-----CEEECCCCCcCccC
Confidence 6667777888888888887776655444 66777777777777765 3444445555555 77777777777666
Q ss_pred chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
+..|..+++|++|++++|++.+..+..+..+++|+.|++++|++.+. +++|+.+++.+|.++|.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 66677777778888887777766666677777788888877776643 34577777777777777764
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.9e-22 Score=188.65 Aligned_cols=212 Identities=20% Similarity=0.205 Sum_probs=142.0
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
..++++++++.+. .+|..+. +.++.|++++|.+++..+.. +..+++|++|++++|.+++..+..|.
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDAT----------FRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTT----------TTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhH----------hcCcccCCEEECCCCcCCccCHhHhc
Confidence 3566777777776 5555443 36777777777776554433 35667777777777777766666666
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
.+++|++|++++|.+.+..+..+ ..+++|++ |++++|.+++..+..|.
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~------------------------------L~L~~N~l~~~~~~~~~ 128 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVF--DHLTQLDK------------------------------LYLGGNQLKSLPSGVFD 128 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTT--TTCTTCCE------------------------------EECCSSCCCCCCTTTTT
T ss_pred cCCcCCEEECCCCcccccChhHh--cccCCCCE------------------------------EEcCCCcCCCcChhHhc
Confidence 66777777777776665543333 44445544 45555555555666788
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCCCCCCcc----
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPGKQFATF---- 455 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~---- 455 (549)
.+++|++|++++|++++..+..|+.+++|+.|++++|++++..+..|..+++|+.|++++|+++|.......+..+
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence 8999999999999999777778999999999999999999888888999999999999999999874432221111
Q ss_pred --CCCccCCCCCCCCCCCCCCCCCC
Q 040238 456 --DNTSFDSNSGLCGRPLSKGCESD 478 (549)
Q Consensus 456 --~~~~~~~n~~lc~~~~~~~c~~~ 478 (549)
......++ ..|+.|....|..+
T Consensus 209 ~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 209 SNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp GGGBCC--------CCGGGCBBTTS
T ss_pred ccceeeccCc-ccccCCCcCccCCC
Confidence 11112232 35666666777665
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=6.8e-24 Score=209.72 Aligned_cols=84 Identities=21% Similarity=0.090 Sum_probs=57.9
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCcccc----ccccCCC-CCCEEeCCCCcCccccCchhhcCCC-----
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQIT----SSLRNLS-QLFFLDLAKNSYRGTIKLDVLLTSW----- 72 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~l----- 72 (549)
++++++|.+++.+|+.+...++|++|+|++|.+.+..+ +.|.+++ +|++|++++|.+.+..+.. +..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE--LVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH--HHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH--HHHHHhccC
Confidence 46778888887777766666668888888888876665 6677777 7888888888777544433 3332
Q ss_pred CCCCeEeccCCcccee
Q 040238 73 KNLEFLALSLNRLSVL 88 (549)
Q Consensus 73 ~~L~~L~Ls~n~i~~~ 88 (549)
++|++|++++|.++..
T Consensus 80 ~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYK 95 (362)
T ss_dssp TTCCEEECCSSCGGGS
T ss_pred CCccEEECcCCcCChH
Confidence 6666666666655443
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=6.9e-22 Score=187.10 Aligned_cols=205 Identities=21% Similarity=0.251 Sum_probs=174.2
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
.+..+++.++.+.+... ...+ ++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+.
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~~l-~~L~~L~l~~~~i~~~------------~~l~~l~~L~~L~l~~n~l~~~--~~l~ 82 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSV------------QGIQYLPNVRYLALGGNKLHDI--SALK 82 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHH-TTCCEEECTTSCCCCC------------TTGGGCTTCCEEECTTSCCCCC--GGGT
T ss_pred HHHHHHhcCcccccccc--cccc-cceeeeeeCCCCcccc------------cccccCCCCcEEECCCCCCCCc--hhhc
Confidence 34566777776664433 2333 3899999999988642 2357899999999999999864 4788
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|++. .++...|..+++| +.|++++|.+++..+..|.
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L-----~~L~L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLVENQLQ-SLPDGVFDKLTNL-----TYLNLAHNQLQSLPKGVFD 154 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCC-CCCTTTTTTCTTC-----CEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECCCCccCccChhHh--cCCcCCCEEECCCCcCC-ccCHHHhccCCCC-----CEEECCCCccCccCHHHhc
Confidence 99999999999999998766555 78999999999999987 4555667777777 9999999999988888899
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG 449 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 449 (549)
.+++|++|++++|++++..+..++.+++|+.|++++|++++..|..+..+++|+.|++++|++.|.+|..
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHH
Confidence 9999999999999999888888899999999999999999888888999999999999999999998853
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=192.67 Aligned_cols=226 Identities=15% Similarity=0.067 Sum_probs=135.0
Q ss_pred cEEECCCCCCCCcccc---cccCCCCCCEEEccCCcCCccccccc--cCCCCCCEEeCCCCcCccccCc--hhhcCCCCC
Q 040238 2 QFLYLRLNNFSGDLLG---SIGNLRSLEAIHIAKCNVSGQITSSL--RNLSQLFFLDLAKNSYRGTIKL--DVLLTSWKN 74 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~~~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~--~~~~~~l~~ 74 (549)
+.|++.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. ...+..+++
T Consensus 67 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 146 (310)
T 4glp_A 67 RRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPG 146 (310)
T ss_dssp CEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSC
T ss_pred eEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccC
Confidence 4555555555422111 12234557777777777776666666 6777777777777777654331 011346677
Q ss_pred CCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCC---CC--hhhcCCCCccEEEeecCcCCCCCCc----cccccc
Q 040238 75 LEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTK---FP--NFLQNQYHLLVLDLSDNRIQGKVPK----WLLDPN 145 (549)
Q Consensus 75 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~---l~--~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~ 145 (549)
|++|++++|.+..+....+. .+++|++|++++|++.. ++ ..+..+++|++|++++|+++ ..+. .+. .
T Consensus 147 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~--~ 222 (310)
T 4glp_A 147 LKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA--A 222 (310)
T ss_dssp CCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH--H
T ss_pred CCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh--c
Confidence 77777777766555443332 56677777777776532 22 22356667777777777765 2222 123 5
Q ss_pred CCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEe
Q 040238 146 MQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLV 225 (549)
Q Consensus 146 l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 225 (549)
+++|++|++++|++.+..+.........++|++|++++|.++......+++|++|++++|.+.+. |. +..+++|++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLT 300 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC-CC-TTSCCCCSCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC-ch-hhhCCCccEEE
Confidence 67777777777777665332121111112377777777777733222356777777877777754 32 57789999999
Q ss_pred CcCCcCCC
Q 040238 226 LSHNNLSG 233 (549)
Q Consensus 226 Ls~n~l~~ 233 (549)
+++|.+++
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 99998874
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.7e-22 Score=183.50 Aligned_cols=162 Identities=14% Similarity=0.112 Sum_probs=78.4
Q ss_pred cCCCCCcEEEccCCc-CCCCcCcccCCCCCCCEEEccC-cccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcc
Q 040238 275 INCSKLEFLGLGNNQ-ISDTFPSWLGTLPNLNVLILRS-NIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352 (549)
Q Consensus 275 ~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 352 (549)
..+++|++|++++|+ ++...+..|..+++|++|++++ |.+.++.+..+ .++++|++|++++|++.+ +|. |..+
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~L~l~~n~l~~-lp~--~~~l 126 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKFLGIFNTGLKM-FPD--LTKV 126 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCEEEEEEECCCS-CCC--CTTC
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCEEeCCCCCCcc-ccc--cccc
Confidence 334444444444443 4433333444444444444444 44444332222 344444444444444433 222 3333
Q ss_pred ccccccccceEEccCC-cCcccCchhhcCCCCCC-EEEccCCccccCCCcccCCCCCCCEeeCCCCc-ccccCCcCccCC
Q 040238 353 NAMKIVNTTGIILSNN-SFDSVIPASIANLKGLQ-VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNK-FSGQIPQQLVEL 429 (549)
Q Consensus 353 ~~l~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 429 (549)
.+++. ++.|++++| .+++..+..|.++++|+ +|++++|+++...+..|.. ++|+.|++++|+ +++..+..|..+
T Consensus 127 ~~L~~--L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 127 YSTDI--FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp CBCCS--EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred ccccc--ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence 33311 125555555 55555555566666666 6666666665333333333 566666666663 554445555566
Q ss_pred -CCCcEEecccCcCcc
Q 040238 430 -TFLEFFNVSDNHLTG 444 (549)
Q Consensus 430 -~~L~~L~l~~N~l~~ 444 (549)
++|+.|++++|++++
T Consensus 204 ~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTA 219 (239)
T ss_dssp SBCCSEEECTTCCCCC
T ss_pred ccCCcEEECCCCcccc
Confidence 666666666666653
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=5.4e-23 Score=203.25 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=150.6
Q ss_pred CcceeecccCCCCCcCc----hhhhcCC-CCCeEeCcCCcCCCcCCcchhcC----CCCCCeeecCCCccCCcCCCcccc
Q 040238 196 GTIHYLASNNSLTGEIP----SWICNLN-ILESLVLSHNNLSGLLPQCLGNS----SDELSVLDLQGNNFFGTIPNTFIK 266 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~~~~~ 266 (549)
+|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+... .++|++|++++|.+++..+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-- 100 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL-- 100 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH--
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH--
Confidence 35555555555555555 5666677 77777887777776655555543 2467778888777765443322
Q ss_pred cCCCCccccCC-CCCcEEEccCCcCCCCcCccc----CC-CCCCCEEEccCcccccccCCCC--CccCCC-CCceeeCCC
Q 040238 267 ERRIPRSLINC-SKLEFLGLGNNQISDTFPSWL----GT-LPNLNVLILRSNIFYGIIKEPR--TDCGFS-KLRIIDLSN 337 (549)
Q Consensus 267 ~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~l~~~~~~~~--~~~~l~-~L~~L~ls~ 337 (549)
...+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.......+ .+..++ +|++|++++
T Consensus 101 ----~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 101 ----VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp ----HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred ----HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 1223444 677888888887776554433 33 2578888888887764321111 112333 788888888
Q ss_pred CccccccChhhhhcc-ccccccccceEEccCCcCccc----CchhhcC-CCCCCEEEccCCccccCCC----cccCCCCC
Q 040238 338 NIFIGTLPLKSFLCW-NAMKIVNTTGIILSNNSFDSV----IPASIAN-LKGLQVLNLQNNSLQGHIP----SCLGNLPN 407 (549)
Q Consensus 338 n~l~~~~~~~~~~~l-~~l~~~~l~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~~ 407 (549)
|++.+..+.. +... .... .+++.|++++|.+++. ++..+.. .++|++|++++|.+.+..+ ..+..+++
T Consensus 177 n~l~~~~~~~-l~~~l~~~~-~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 177 NNLASKNCAE-LAKFLASIP-ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp SCGGGSCHHH-HHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred CCCchhhHHH-HHHHHHhCC-CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 8776544432 2221 1110 1238888888888763 3444544 4588999999998876443 34577788
Q ss_pred CCEeeCCCCccccc-------CCcCccCCCCCcEEecccCcCccc
Q 040238 408 LESLDLSNNKFSGQ-------IPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 408 L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
|+.|++++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99999998884422 334677788889999999988755
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.6e-21 Score=178.57 Aligned_cols=196 Identities=21% Similarity=0.283 Sum_probs=102.0
Q ss_pred CcceeecccCCCCCcCchhhhcCCCCCeEeCcCCc-CCCcCCcchhcCCCCCCeeecCC-CccCCcCCCcccccCCCCcc
Q 040238 196 GTIHYLASNNSLTGEIPSWICNLNILESLVLSHNN-LSGLLPQCLGNSSDELSVLDLQG-NNFFGTIPNTFIKERRIPRS 273 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~~ 273 (549)
++++|++++|.+.+..+..|.++++|++|++++|. +++..+..+.. .++|++|++++ |.+++..+..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~-l~~L~~L~l~~~n~l~~i~~~~---------- 100 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDA---------- 100 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES-CTTCCEEEEEEETTCCEECTTS----------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC-CcCCcEEECCCCCCeeEcCHHH----------
Confidence 34444444444444444455555566666666554 44222222222 22455555554 5554333222
Q ss_pred ccCCCCCcEEEccCCcCCCCcCcccCCCCCCC---EEEccCc-ccccccCCCCCccCCCCCceeeCCCCccccccChhhh
Q 040238 274 LINCSKLEFLGLGNNQISDTFPSWLGTLPNLN---VLILRSN-IFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSF 349 (549)
Q Consensus 274 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 349 (549)
+..+++|++|++++|++++ +|. +..+++|+ +|++++| .+.++ +...|
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i---------------------------~~~~~ 151 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSI---------------------------PVNAF 151 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEE---------------------------CTTTT
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhc---------------------------Ccccc
Confidence 2445555555555555543 232 44444444 5555555 44444 33334
Q ss_pred hccccccccccc-eEEccCCcCcccCchhhcCCCCCCEEEccCCc-cccCCCcccCCC-CCCCEeeCCCCcccccCCcCc
Q 040238 350 LCWNAMKIVNTT-GIILSNNSFDSVIPASIANLKGLQVLNLQNNS-LQGHIPSCLGNL-PNLESLDLSNNKFSGQIPQQL 426 (549)
Q Consensus 350 ~~l~~l~~~~l~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~ 426 (549)
..++.+ + .|++++|.++...+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++ +|..
T Consensus 152 ~~l~~L-----~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~- 223 (239)
T 2xwt_C 152 QGLCNE-----TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK- 223 (239)
T ss_dssp TTTBSS-----EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-
T ss_pred cchhcc-----eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-
Confidence 444444 4 4555555555333344444 677777777774 765556667777 777777777777773 3332
Q ss_pred cCCCCCcEEecccC
Q 040238 427 VELTFLEFFNVSDN 440 (549)
Q Consensus 427 ~~l~~L~~L~l~~N 440 (549)
.+++|+.|+++++
T Consensus 224 -~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 -GLEHLKELIARNT 236 (239)
T ss_dssp -TCTTCSEEECTTC
T ss_pred -HhccCceeeccCc
Confidence 4567777777665
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.2e-21 Score=184.28 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=142.8
Q ss_pred hhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCc
Q 040238 215 ICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTF 294 (549)
Q Consensus 215 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~ 294 (549)
...+++|++|++++|.+. .++ .+..+ ++|++|++++|.+++.. . +..+++|++|++++|++++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l-~~L~~L~L~~n~i~~~~-----------~-~~~l~~L~~L~L~~n~l~~~- 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYL-NNLIGLELKDNQITDLA-----------P-LKNLTKITELELSGNPLKNV- 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGC-TTCCEEECCSSCCCCCG-----------G-GTTCCSCCEEECCSCCCSCC-
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhcc-CCCCEEEccCCcCCCCh-----------h-HccCCCCCEEEccCCcCCCc-
Confidence 345667777777777776 344 34333 36777777777775432 2 46677788888888877753
Q ss_pred CcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccC
Q 040238 295 PSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVI 374 (549)
Q Consensus 295 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~ 374 (549)
..+..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..+++| +.|++++|.+++..
T Consensus 101 -~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L-----~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 101 -SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP---LAGLTNL-----QYLSIGNAQVSDLT 167 (308)
T ss_dssp -GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GGGCTTC-----CEEECCSSCCCCCG
T ss_pred -hhhcCCCCCCEEECCCCCCCCchh----hcCCCCCCEEECCCCccCcCcc---ccCCCCc-----cEEEccCCcCCCCh
Confidence 357777788888888887766532 3677788888888887764332 5555555 88888888887644
Q ss_pred chhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCccc
Q 040238 375 PASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 375 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++.
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 4 8889999999999999985433 7888999999999999986553 78899999999999999763
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.3e-20 Score=176.16 Aligned_cols=181 Identities=25% Similarity=0.290 Sum_probs=146.6
Q ss_pred CCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccc
Q 040238 195 PGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSL 274 (549)
Q Consensus 195 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l 274 (549)
...++++++++.+.. +|..+. +.+++|++++|.+.+..+..+..+. +|++|++++|.+++..+.. +
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~----------~ 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGV----------F 79 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTT----------T
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhH----------h
Confidence 356789999998884 444443 6899999999999977776666555 8999999999998765544 4
Q ss_pred cCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccc
Q 040238 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354 (549)
Q Consensus 275 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 354 (549)
..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+ ..+++|+.|++++|++
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l-------------- 143 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF--DRLTKLKELRLNTNQL-------------- 143 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCC--------------
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh--ccCCcccEEECcCCcC--------------
Confidence 788999999999999998888889999999999999999987755444 5666776666666654
Q ss_pred ccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccccc
Q 040238 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQ 421 (549)
Q Consensus 355 l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 421 (549)
++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.+.
T Consensus 144 ----------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 144 ----------------QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----------------CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 344555688889999999999999977777888999999999999998755
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.6e-23 Score=206.61 Aligned_cols=241 Identities=19% Similarity=0.199 Sum_probs=145.1
Q ss_pred CcceeecccCCCCCcCc----hhhhcCCCCCeEeCcCCc---CCCcCCcchh------cCCCCCCeeecCCCccCCcCCC
Q 040238 196 GTIHYLASNNSLTGEIP----SWICNLNILESLVLSHNN---LSGLLPQCLG------NSSDELSVLDLQGNNFFGTIPN 262 (549)
Q Consensus 196 ~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~------~~~~~L~~L~L~~n~l~~~~~~ 262 (549)
+|++|++++|.+....+ ..+..+++|++|++++|. +.+.+|..+. ...++|++|++++|.+++....
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 34444444444443322 224456667777776643 3333444331 1223677777777766542111
Q ss_pred cccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC----CC---------CCCCEEEccCcccccccCC--CCCccCC
Q 040238 263 TFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG----TL---------PNLNVLILRSNIFYGIIKE--PRTDCGF 327 (549)
Q Consensus 263 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~~~~~~--~~~~~~l 327 (549)
.+|..+..+++|++|++++|.+....+..+. .+ ++|++|++++|.+...... ...+..+
T Consensus 113 ------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 113 ------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp ------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred ------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 1234456667777777777766543332222 22 6777777777766521111 0112456
Q ss_pred CCCceeeCCCCccccc----cChhhhhccccccccccceEEccCCcCc----ccCchhhcCCCCCCEEEccCCccccC--
Q 040238 328 SKLRIIDLSNNIFIGT----LPLKSFLCWNAMKIVNTTGIILSNNSFD----SVIPASIANLKGLQVLNLQNNSLQGH-- 397 (549)
Q Consensus 328 ~~L~~L~ls~n~l~~~----~~~~~~~~l~~l~~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~-- 397 (549)
++|+.|++++|++... +....+..+++| +.|++++|.++ ..+|..+..+++|++|++++|.+.+.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-----~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-----KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-----CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-----cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 6777777777766421 111123344444 77777777775 55677788889999999999998865
Q ss_pred --CCccc--CCCCCCCEeeCCCCcccc----cCCcCc-cCCCCCcEEecccCcCcccCC
Q 040238 398 --IPSCL--GNLPNLESLDLSNNKFSG----QIPQQL-VELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 398 --~~~~~--~~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~p 447 (549)
++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45666 348899999999999987 477666 568999999999999986653
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=5.7e-23 Score=205.19 Aligned_cols=138 Identities=20% Similarity=0.344 Sum_probs=79.6
Q ss_pred CCCcEEEccCCcCCC-CcC---cccCCCCCCCEEEccCccccc-----ccCCCCCccCCCCCceeeCCCCccc----ccc
Q 040238 278 SKLEFLGLGNNQISD-TFP---SWLGTLPNLNVLILRSNIFYG-----IIKEPRTDCGFSKLRIIDLSNNIFI----GTL 344 (549)
Q Consensus 278 ~~L~~L~l~~n~l~~-~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~l~~L~~L~ls~n~l~----~~~ 344 (549)
++|++|++++|+++. ..+ ..+..+++|++|++++|.+.. ..+. .+..+++|+.|++++|.++ +.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHHH
Confidence 444555555554441 122 233344455555555554431 1111 1144555555555555553 222
Q ss_pred ChhhhhccccccccccceEEccCCcCccc----CchhhcC--CCCCCEEEccCCcccc----CCCccc-CCCCCCCEeeC
Q 040238 345 PLKSFLCWNAMKIVNTTGIILSNNSFDSV----IPASIAN--LKGLQVLNLQNNSLQG----HIPSCL-GNLPNLESLDL 413 (549)
Q Consensus 345 ~~~~~~~l~~l~~~~l~~L~l~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l 413 (549)
|. .+..+++| +.|++++|.+++. ++..+.. +++|++|++++|.+.+ .+|..+ .++++|+.|++
T Consensus 237 ~~-~l~~~~~L-----~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 237 AI-ALKSWPNL-----RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HH-HGGGCTTC-----CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HH-HHccCCCc-----CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 22 23344444 6666666666654 4556643 8999999999999986 377766 66899999999
Q ss_pred CCCcccccCC
Q 040238 414 SNNKFSGQIP 423 (549)
Q Consensus 414 ~~n~l~~~~~ 423 (549)
++|++++..+
T Consensus 311 ~~N~l~~~~~ 320 (386)
T 2ca6_A 311 NGNRFSEEDD 320 (386)
T ss_dssp TTSBSCTTSH
T ss_pred cCCcCCcchh
Confidence 9999986653
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6.6e-20 Score=176.55 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=144.0
Q ss_pred CCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccc
Q 040238 7 RLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLS 86 (549)
Q Consensus 7 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~ 86 (549)
..+.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 27 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 27 GKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLK 98 (308)
T ss_dssp TCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCS
T ss_pred CCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCC
Confidence 344444332 245678889999998888764 3 57888889999999888874333 678888999999998877
Q ss_pred eeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCcc
Q 040238 87 VLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHL 166 (549)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 166 (549)
.++. ...+++|++|++++|.++.++. +..+++|++|++++|.+++..+ +. .+++|+.|++++|.+....+
T Consensus 99 ~~~~---~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 99 NVSA---IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LA--GLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp CCGG---GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--
T ss_pred Cchh---hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--cc--CCCCccEEEccCCcCCCChh--
Confidence 7643 2267889999999998877764 7888899999999998875433 55 78899999999988876554
Q ss_pred ccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCC
Q 040238 167 VVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDEL 246 (549)
Q Consensus 167 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 246 (549)
.... ++|+.|++++|.+.+. +. +..+++|++|++++|.+.+..+ +.. .++|
T Consensus 169 -l~~l--~~L~~L~l~~n~l~~~----------------------~~-l~~l~~L~~L~L~~N~l~~~~~--l~~-l~~L 219 (308)
T 1h6u_A 169 -LANL--SKLTTLKADDNKISDI----------------------SP-LASLPNLIEVHLKNNQISDVSP--LAN-TSNL 219 (308)
T ss_dssp -GTTC--TTCCEEECCSSCCCCC----------------------GG-GGGCTTCCEEECTTSCCCBCGG--GTT-CTTC
T ss_pred -hcCC--CCCCEEECCCCccCcC----------------------hh-hcCCCCCCEEEccCCccCcccc--ccC-CCCC
Confidence 1222 2366777666666522 22 5667777777777777764332 333 3367
Q ss_pred CeeecCCCccCC
Q 040238 247 SVLDLQGNNFFG 258 (549)
Q Consensus 247 ~~L~L~~n~l~~ 258 (549)
++|++++|.+++
T Consensus 220 ~~L~l~~N~i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQTITN 231 (308)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEccCCeeec
Confidence 777777777754
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2e-22 Score=197.33 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=51.6
Q ss_pred ceEEccCCc-CcccCchhhcCCCCCCEEEccCCc-cccCCCcccCCCCCCCEeeCCCCcccccCCcCccCC-CCCcEEec
Q 040238 361 TGIILSNNS-FDSVIPASIANLKGLQVLNLQNNS-LQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVEL-TFLEFFNV 437 (549)
Q Consensus 361 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l 437 (549)
+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++ ...+..+ ..++.|++
T Consensus 225 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQI 300 (336)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEE
T ss_pred CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEE
Confidence 666666666 555556667777778888887774 22221224667777888888777 32 1233333 23666667
Q ss_pred ccCcCcccCCC
Q 040238 438 SDNHLTGLIPP 448 (549)
Q Consensus 438 ~~N~l~~~~p~ 448 (549)
++|++++..|.
T Consensus 301 ~~n~l~~~~~~ 311 (336)
T 2ast_B 301 NCSHFTTIARP 311 (336)
T ss_dssp SCCCSCCTTCS
T ss_pred ecccCccccCC
Confidence 77777776663
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.4e-21 Score=191.47 Aligned_cols=252 Identities=21% Similarity=0.183 Sum_probs=149.1
Q ss_pred cEEECCCCCCCCcccccccCC--CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccc-cCchhhcCCCCCCCeE
Q 040238 2 QFLYLRLNNFSGDLLGSIGNL--RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGT-IKLDVLLTSWKNLEFL 78 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L 78 (549)
+.+|++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.+. .+.. +..+++|++|
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~--~~~~~~L~~L 123 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNL 123 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH--HTTBCCCSEE
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH--HhhCCCCCEE
Confidence 56777777665 3445555 7778888887777766554 44677788888887777644 4433 6777778888
Q ss_pred eccCCccceeeccCCCcCCCCCCEEEccCC-CCC--CCChhhcCCCCccEEEeecC-cCCCC-CCcccccccCC-CCcEE
Q 040238 79 ALSLNRLSVLTKATSNTTSQKLKYIGLRSC-NLT--KFPNFLQNQYHLLVLDLSDN-RIQGK-VPKWLLDPNMQ-NLNAL 152 (549)
Q Consensus 79 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~--~l~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~l~-~L~~L 152 (549)
++++|.++........ .+++|++|++++| .++ .++..+..+++|++|++++| .+++. .+..+. .++ +|++|
T Consensus 124 ~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~l~~~L~~L 200 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA--HVSETITQL 200 (336)
T ss_dssp ECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH--HSCTTCCEE
T ss_pred eCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH--hcccCCCEE
Confidence 8877765432222111 4677777777777 554 35556667777777777777 66543 344454 666 77777
Q ss_pred EccCCc--CCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCC-CCCcCchhhhcCCCCCeEeCcCC
Q 040238 153 NISHNF--LTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNS-LTGEIPSWICNLNILESLVLSHN 229 (549)
Q Consensus 153 ~L~~n~--~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~Ls~n 229 (549)
++++|. ++.......... +++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~-----------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRR-----------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHH-----------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EeCCCcccCCHHHHHHHHhh-----------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 777763 221100001111 3344444444444 44455566777788888888877
Q ss_pred c-CCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCC-CCCcEEEccCCcCCCCcCcccCC
Q 040238 230 N-LSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINC-SKLEFLGLGNNQISDTFPSWLGT 300 (549)
Q Consensus 230 ~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~ 300 (549)
. +.......+.. .++|++|++++| ++.. . +..+ ..++.|++++|++++..|..++.
T Consensus 258 ~~~~~~~~~~l~~-~~~L~~L~l~~~-i~~~---~----------~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGE-IPTLKTLQVFGI-VPDG---T----------LQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGG-CTTCCEEECTTS-SCTT---C----------HHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhc-CCCCCEEeccCc-cCHH---H----------HHHHHhhCcceEEecccCccccCCcccc
Confidence 4 22221123444 347888888877 3211 1 1112 23555667888888777766553
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.6e-19 Score=177.44 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=168.7
Q ss_pred EEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCe-eecCCCcc
Q 040238 178 TFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSV-LDLQGNNF 256 (549)
Q Consensus 178 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~-L~L~~n~l 256 (549)
.++.+++.++..-...++++++|++++|++....+.+|.++++|++|+|++|.+.+.+|...+...+++++ +.+++|++
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 44444444442211123456666666667665556678999999999999999877777655544445654 66777888
Q ss_pred CCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccC-cccccccCCCCCccCC-CCCceee
Q 040238 257 FGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRS-NIFYGIIKEPRTDCGF-SKLRIID 334 (549)
Q Consensus 257 ~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l-~~L~~L~ 334 (549)
++..+.. +..+++|++|++++|++....+..+....++..+++.+ +.+..+....+ ..+ ..++.|+
T Consensus 93 ~~l~~~~----------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--~~~~~~l~~L~ 160 (350)
T 4ay9_X 93 LYINPEA----------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--VGLSFESVILW 160 (350)
T ss_dssp CEECTTS----------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS--TTSBSSCEEEE
T ss_pred cccCchh----------hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch--hhcchhhhhhc
Confidence 7665544 47889999999999999877776677777888888866 45666554444 444 4688999
Q ss_pred CCCCccccccChhhhhccccccccccceEEccC-CcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeC
Q 040238 335 LSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSN-NSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDL 413 (549)
Q Consensus 335 ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 413 (549)
+++|++. .++..+|.. ..+ +.+++++ |.++.+.++.|.++++|++|++++|+++...+..| .+|+.|.+
T Consensus 161 L~~N~i~-~i~~~~f~~-~~L-----~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~ 230 (350)
T 4ay9_X 161 LNKNGIQ-EIHNSAFNG-TQL-----DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRA 230 (350)
T ss_dssp CCSSCCC-EECTTSSTT-EEE-----EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEEC
T ss_pred ccccccc-CCChhhccc-cch-----hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhh
Confidence 9999986 566565543 234 8888875 56666666788999999999999999995544444 55666666
Q ss_pred CCCcccccCCcCccCCCCCcEEecccC
Q 040238 414 SNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 414 ~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
.++.-.+.+| .+..+++|+.++++++
T Consensus 231 l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 231 RSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 5554444677 4788999999999765
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3e-19 Score=175.37 Aligned_cols=82 Identities=10% Similarity=0.152 Sum_probs=43.1
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCe-Eecc
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEF-LALS 81 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~-L~Ls 81 (549)
+++.++++++ .+|..+ .+++++|+|++|+++.+.+++|.++++|++|+|++|.+.+.++.. +|.++++++. +.++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-Hhhcchhhhhhhccc
Confidence 4455555555 334433 245666666666666555555666666666666666655444433 3555555443 3334
Q ss_pred CCcccee
Q 040238 82 LNRLSVL 88 (549)
Q Consensus 82 ~n~i~~~ 88 (549)
+|+++.+
T Consensus 89 ~N~l~~l 95 (350)
T 4ay9_X 89 ANNLLYI 95 (350)
T ss_dssp ETTCCEE
T ss_pred CCccccc
Confidence 4444443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.1e-19 Score=185.69 Aligned_cols=181 Identities=24% Similarity=0.358 Sum_probs=129.0
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
+++.|++++|.+++ +|..++ ++|++|++++|.++. + | ..+++|++|++++|++++ +|. +.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~~-i----------p---~~l~~L~~L~Ls~N~l~~-ip~-l~ 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALIS-L----------P---ELPASLEYLDACDNRLST-LPE-LP 119 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCSC-C----------C---CCCTTCCEEECCSSCCSC-CCC-CC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCcc-c----------c---cccCCCCEEEccCCCCCC-cch-hh
Confidence 78888888888774 665543 368888888887762 2 2 235778888888888876 554 54
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
. +|++|++++|.++++.. .+++|+.|++++|++.+ +|. .+++| +.|++++|.+++ +|. |.
T Consensus 120 ~--~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~-lp~----~l~~L-----~~L~Ls~N~L~~-lp~-l~ 179 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTM-LPE----LPTSL-----EVLSVRNNQLTF-LPE-LP 179 (571)
T ss_dssp T--TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC-CCC----CCTTC-----CEEECCSSCCSC-CCC-CC
T ss_pred c--CCCEEECCCCcCCCCCC------cCccccEEeCCCCccCc-CCC----cCCCc-----CEEECCCCCCCC-cch-hh
Confidence 4 78888888888777432 46788888888888765 453 23333 888888888876 454 55
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCC-------CEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNL-------ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
++|++|++++|+|+ .+|. |.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 180 --~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 180 --ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp --TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred --CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 78888888888888 5655 543 66 88888888888 577777778888888888888887655
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=7.4e-20 Score=166.96 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=103.1
Q ss_pred CCcEEEccCCcCCCCcC-cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccc
Q 040238 279 KLEFLGLGNNQISDTFP-SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 279 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
.+++|++++|++++..+ ..|..+++|++|++++|.+.++.+ ..|..+++|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~---------------------------~~~~~l~~L-- 83 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE---------------------------GAFEGASGV-- 83 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT---------------------------TTTTTCTTC--
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH---------------------------HHhCCCCCC--
Confidence 34555555555554422 234555555555555555544433 334444444
Q ss_pred cccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++
T Consensus 84 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 84 ---NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp ---CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred ---CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 55666666666677778999999999999999999888999999999999999999999888999999999999999
Q ss_pred ccCcCcccCCC
Q 040238 438 SDNHLTGLIPP 448 (549)
Q Consensus 438 ~~N~l~~~~p~ 448 (549)
++|+|.|.++.
T Consensus 161 ~~N~l~c~c~l 171 (220)
T 2v70_A 161 LANPFNCNCYL 171 (220)
T ss_dssp CSCCEECSGGG
T ss_pred cCcCCcCCCch
Confidence 99999998873
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.1e-19 Score=165.84 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=105.0
Q ss_pred CCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccc
Q 040238 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 278 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
+++++|++++|++++..+..|..+++|++|++++|.+.++.+..+ .++++|++|+++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls--------------------- 88 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY--------------------- 88 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC---------------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC---------------------
Confidence 466666666666665555566666666666666666665544433 445555555554
Q ss_pred cccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+|.+++..+..|.++++|++|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 89 ---------~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 ---------GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp ---------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---------CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 55555555667888999999999999999888899999999999999999999888888999999999999
Q ss_pred ccCcCcccCC
Q 040238 438 SDNHLTGLIP 447 (549)
Q Consensus 438 ~~N~l~~~~p 447 (549)
++|+|.|.++
T Consensus 160 ~~N~~~c~c~ 169 (220)
T 2v9t_B 160 AQNPFICDCH 169 (220)
T ss_dssp CSSCEECSGG
T ss_pred CCCCcCCCCc
Confidence 9999998775
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.8e-19 Score=160.39 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=106.7
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.++.+++.++.. |..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+++..+.. |..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECC
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh--cCCCCCcCEEECC
Confidence 4577777777643 4333 457888888888888777777888888888888888887443333 6788888888888
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLT 160 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~ 160 (549)
+|.++.++...+. .+++|++|++++|.++.++. .+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCCBC
T ss_pred CCcCCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCCCee
Confidence 8877765543322 56777888887777766665 356677777777777777755555555 6677777777776544
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=7.3e-19 Score=159.22 Aligned_cols=117 Identities=22% Similarity=0.248 Sum_probs=59.4
Q ss_pred cCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccc
Q 040238 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354 (549)
Q Consensus 275 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 354 (549)
..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|++.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~------------- 137 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLK------------- 137 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCS-------------
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccc-------------
Confidence 344555555555555554444445555555555555555554433322 44555555555554433
Q ss_pred ccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC
Q 040238 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT 430 (549)
Q Consensus 355 l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 430 (549)
+..+..|..+++|++|++++|.+. ..+++|+.|+++.|++++.+|..++.++
T Consensus 138 -----------------~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 138 -----------------SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -----------------CCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -----------------eeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 122223444555555566555444 2334556666666666666665555443
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.2e-19 Score=175.90 Aligned_cols=180 Identities=25% Similarity=0.208 Sum_probs=119.9
Q ss_pred CeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCcccc-CCCCCcEEEccCCcCCCCcCcccCC
Q 040238 222 ESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLI-NCSKLEFLGLGNNQISDTFPSWLGT 300 (549)
Q Consensus 222 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~ 300 (549)
+.++++++.+. .+|..+. +.++.|+|++|.+++..+..| . .+++|++|++++|++++..+..|..
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~----------~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWT----------PTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSS----------SSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhh----------hhcccccCEEECCCCcCCccChhhccC
Confidence 56777777777 5665443 357777777777766544333 3 5677777777777777666666777
Q ss_pred CCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcC
Q 040238 301 LPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIAN 380 (549)
Q Consensus 301 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~ 380 (549)
+++|++|+|++|.+..+.+..+ .++++|+.|++++|+ +++..+..|..
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~------------------------------i~~~~~~~~~~ 134 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLF--SDLQALEVLLLYNNH------------------------------IVVVDRNAFED 134 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSC------------------------------CCEECTTTTTT
T ss_pred CCCCCEEECCCCcCCcCCHHHh--CCCcCCCEEECCCCc------------------------------ccEECHHHhCC
Confidence 7777777777777766544433 455555555555554 44555667777
Q ss_pred CCCCCEEEccCCccccCCCccc---CCCCCCCEeeCCCCcccccCCcCccCCCC--CcEEecccCcCcccCC
Q 040238 381 LKGLQVLNLQNNSLQGHIPSCL---GNLPNLESLDLSNNKFSGQIPQQLVELTF--LEFFNVSDNHLTGLIP 447 (549)
Q Consensus 381 l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~p 447 (549)
+++|++|+|++|++++..+..| ..+++|+.|+|++|++++..+..+..++. ++.|++++|+|.|.+.
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 8888888888888875444445 56788888888888887555556666666 3778888888877653
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.6e-18 Score=159.19 Aligned_cols=138 Identities=23% Similarity=0.216 Sum_probs=104.0
Q ss_pred CCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccc
Q 040238 278 SKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKI 357 (549)
Q Consensus 278 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~ 357 (549)
++|++|++++|.+++..+..|..+++|++|++++|.+..+.+..+ ..+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L--------------------------- 90 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQL--------------------------- 90 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTC---------------------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCc---------------------------
Confidence 566666666666666556666666666666666666544433322 344444
Q ss_pred cccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 358 VNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 358 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+.|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++
T Consensus 91 ---~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 91 ---TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp ---CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ---CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 55555555555666677889999999999999999 78888999999999999999999777788999999999999
Q ss_pred ccCcCcccCCC
Q 040238 438 SDNHLTGLIPP 448 (549)
Q Consensus 438 ~~N~l~~~~p~ 448 (549)
++|++.|.++.
T Consensus 167 ~~N~~~c~c~~ 177 (229)
T 3e6j_A 167 FGNPWDCECRD 177 (229)
T ss_dssp TTSCBCTTBGG
T ss_pred eCCCccCCcch
Confidence 99999998863
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=3.2e-18 Score=176.77 Aligned_cols=184 Identities=26% Similarity=0.392 Sum_probs=121.8
Q ss_pred CCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEE
Q 040238 24 SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYI 103 (549)
Q Consensus 24 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L 103 (549)
+|++|++++|++.+ +|..+ .++|++|++++|.++ .+| . .+++|++|++++|.++.++. .. .+|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~----~l~~L~~L~Ls~N~l~~ip~--l~---~~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E----LPASLEYLDACDNRLSTLPE--LP---ASLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C----CCTTCCEEECCSSCCSCCCC--CC---TTCCEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c----ccCCCCEEEccCCCCCCcch--hh---cCCCEE
Confidence 78888888888876 44444 377888888888887 555 3 35788888888888877655 11 288888
Q ss_pred EccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccC
Q 040238 104 GLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSS 183 (549)
Q Consensus 104 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~ 183 (549)
++++|.++.+|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++.+++. +. ++|+.|++++
T Consensus 126 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~lp~--l~-----~~L~~L~Ls~ 189 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTFLPE--LP-----ESLEALDVST 189 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC--CC-----TTCCEEECCS
T ss_pred ECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCCcch--hh-----CCCCEEECcC
Confidence 888888877887 57888888888888874 444 46788888888888887554 11 3488888888
Q ss_pred CcCCCCCCCCCCCc-------ceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcch
Q 040238 184 NNLQGPLPVPPPGT-------IHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL 239 (549)
Q Consensus 184 n~l~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 239 (549)
|.++. +|....+| +.|++++|.+. .+|..+..+++|+.|++++|.+++.+|..+
T Consensus 190 N~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 190 NLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SCCSS-CCCCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCCCc-hhhHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 88773 22222233 44444444444 234444445555555555555544444433
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3e-18 Score=163.47 Aligned_cols=150 Identities=24% Similarity=0.358 Sum_probs=96.3
Q ss_pred cCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccc
Q 040238 275 INCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNA 354 (549)
Q Consensus 275 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~ 354 (549)
..+++|++|++++|++++..+ +..+++|++|++++|.+.+... +..+++|++|++++|++.+. ..+..+++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~n~i~~~---~~l~~l~~ 135 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLEHNGISDI---NGLVHLPQ 135 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG----GTTCTTCCEEECTTSCCCCC---GGGGGCTT
T ss_pred hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh----hccCCCCCEEECCCCcCCCC---hhhcCCCC
Confidence 445555555555555554332 5555555555555555544321 24555555555555555432 12334444
Q ss_pred ccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcE
Q 040238 355 MKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEF 434 (549)
Q Consensus 355 l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 434 (549)
| +.|++++|.+++. ..+..+++|++|++++|++.+..+ +..+++|+.|++++|++++ ++ .+..+++|+.
T Consensus 136 L-----~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~ 204 (291)
T 1h6t_A 136 L-----ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV 204 (291)
T ss_dssp C-----CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred C-----CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 4 6666666666654 467888889999999998885544 7888889999999998885 34 3788888999
Q ss_pred EecccCcCcc
Q 040238 435 FNVSDNHLTG 444 (549)
Q Consensus 435 L~l~~N~l~~ 444 (549)
|++++|+++.
T Consensus 205 L~l~~n~i~~ 214 (291)
T 1h6t_A 205 LELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEC
T ss_pred EECcCCcccC
Confidence 9999988875
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=155.90 Aligned_cols=136 Identities=19% Similarity=0.257 Sum_probs=106.9
Q ss_pred ceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCE
Q 040238 331 RIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLES 410 (549)
Q Consensus 331 ~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 410 (549)
+.|++++|++.+..+.+.|..++.| +.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L-----~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQL-----RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTC-----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CEEEcCCCcCCccCchhhhccCCCC-----CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 3344444444333333334444444 66666777777777889999999999999999999888888999999999
Q ss_pred eeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040238 411 LDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPPG-KQFATFDNTSFDSNSGLCGRPL 471 (549)
Q Consensus 411 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 471 (549)
|++++|++++..|..|..+++|++|++++|++++..|.. ..+..++.+.+.+|++.|++++
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999999999988999999999999999999999887643 4466677778888888887653
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.4e-17 Score=152.96 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=130.1
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+.++.+++.++ .+|..+. ++|++|+|++|.+.+..+..|.++++|++|++++|.+.. ++.. .|..+++|++|+++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~-~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVG-VFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECC
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChh-hcccCCCcCEEECC
Confidence 56888998887 4555443 889999999999999989999999999999999999974 4433 37899999999999
Q ss_pred CCccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 82 LNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 82 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+|.++.++...+. .+++|++|++++|.++.+|..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.+..
T Consensus 97 ~N~l~~l~~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFD-RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD--RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTT-TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhC-cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCCccC
Confidence 9988877665443 68899999999999999999999999999999999999876666777 88999999999998775
Q ss_pred CC
Q 040238 162 FD 163 (549)
Q Consensus 162 ~~ 163 (549)
..
T Consensus 174 ~c 175 (229)
T 3e6j_A 174 EC 175 (229)
T ss_dssp TB
T ss_pred Cc
Confidence 43
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=9.6e-18 Score=152.90 Aligned_cols=153 Identities=24% Similarity=0.325 Sum_probs=126.7
Q ss_pred CeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCC
Q 040238 222 ESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTL 301 (549)
Q Consensus 222 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 301 (549)
+.++++++.++ .+|..+. +++++|++++|.+++..+.. +..+++|++|++++|++++..|..|.++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~----------~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGA----------FSPYKKLRRIDLSNNQISELAPDAFQGL 79 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTS----------STTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhH----------hhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence 67999999998 6777553 48999999999998765544 4788999999999999998889999999
Q ss_pred CCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCC
Q 040238 302 PNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANL 381 (549)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l 381 (549)
++|++|+|++|.+..+.+..+ .++++|+.|++++|++ ++..+..|..+
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~N~l------------------------------~~~~~~~~~~l 127 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLF--EGLFSLQLLLLNANKI------------------------------NCLRVDAFQDL 127 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCC------------------------------CCCCTTTTTTC
T ss_pred cCCCEEECCCCcCCccCHhHc--cCCCCCCEEECCCCCC------------------------------CEeCHHHcCCC
Confidence 999999999999987755444 5566666666666554 45566778889
Q ss_pred CCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccc
Q 040238 382 KGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSG 420 (549)
Q Consensus 382 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 420 (549)
++|++|++++|.+++..++.|..+++|+.|++++|++..
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999999999997777889999999999999999874
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=6e-18 Score=166.79 Aligned_cols=178 Identities=22% Similarity=0.246 Sum_probs=130.7
Q ss_pred cceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccC
Q 040238 197 TIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLIN 276 (549)
Q Consensus 197 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~ 276 (549)
-+.++++++.+.. +|..+ .+.++.|+|++|.+++..+..+....++|++|+|++|.+++..+.. +..
T Consensus 20 ~~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~----------~~~ 86 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA----------FVP 86 (361)
T ss_dssp TTEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT----------TTT
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh----------ccC
Confidence 3678999998885 45444 3468999999999996655555424458999999999998766544 478
Q ss_pred CCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhh---ccc
Q 040238 277 CSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFL---CWN 353 (549)
Q Consensus 277 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~---~l~ 353 (549)
+++|++|++++|+++...+..|..+++|++|+|++|.+.++.+..+ .++++|+.|++++|++.+ +|...|. .++
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~ 163 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISR-FPVELIKDGNKLP 163 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCS-CCGGGTC----CT
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCe-eCHHHhcCcccCC
Confidence 9999999999999998888889999999999999999998876655 788999999999998763 5544442 233
Q ss_pred cccccccceEEccCCcCcccCchhhcCCCC--CCEEEccCCccc
Q 040238 354 AMKIVNTTGIILSNNSFDSVIPASIANLKG--LQVLNLQNNSLQ 395 (549)
Q Consensus 354 ~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~ 395 (549)
+| +.|+|++|.+++..+..|..++. ++.|++++|.+.
T Consensus 164 ~L-----~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 164 KL-----MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TC-----CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cC-----CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 33 55555555555544445555544 255555555544
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.9e-17 Score=157.85 Aligned_cols=171 Identities=19% Similarity=0.197 Sum_probs=90.4
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCC
Q 040238 20 GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQK 99 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 99 (549)
..+++|++|++++|.+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.++.++. ...+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLSS---LKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGGG---GTTCTT
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcCCCChh---hccCCC
Confidence 3455566666666655543 235555666666666665553222 4555666666666665554332 124555
Q ss_pred CCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEE
Q 040238 100 LKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTF 179 (549)
Q Consensus 100 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 179 (549)
|++|++++|.++.++ .+..+++|++|++++|.+++. ..+. .+++|+.|++++|.+.+..+ .... ++|+.|
T Consensus 114 L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~L~~N~l~~~~~---l~~l--~~L~~L 183 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISDIVP---LAGL--TKLQNL 183 (291)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCCCGG---GTTC--TTCCEE
T ss_pred CCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhc--cCCCCCEEEccCCccccchh---hcCC--CccCEE
Confidence 666666666555542 455555666666666665533 3344 55666666666665555433 1112 226666
Q ss_pred EccCCcCCCCCC-CCCCCcceeecccCCCCC
Q 040238 180 DLSSNNLQGPLP-VPPPGTIHYLASNNSLTG 209 (549)
Q Consensus 180 ~L~~n~l~~~~~-~~~~~L~~L~l~~n~~~~ 209 (549)
++++|.+++... ..+++|+.|++++|.+..
T Consensus 184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 666665554311 125566666666666554
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.4e-17 Score=174.02 Aligned_cols=171 Identities=25% Similarity=0.340 Sum_probs=86.1
Q ss_pred hcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcC
Q 040238 216 CNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFP 295 (549)
Q Consensus 216 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~ 295 (549)
..++.|+.|++++|.+. .++ .+..+ ++|+.|+|++|.+++..+ +..+++|+.|+|++|.+.+.
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~-~l~~l-~~L~~L~Ls~N~l~~~~~------------l~~l~~L~~L~Ls~N~l~~l-- 102 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQ-GIQYL-PNVTKLFLNGNKLTDIKP------------LTNLKNLGWLFLDENKIKDL-- 102 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCT-TGGGC-TTCCEEECTTSCCCCCGG------------GGGCTTCCEEECCSSCCCCC--
T ss_pred hcCCCCCEEECcCCCCC-CCh-HHccC-CCCCEEEeeCCCCCCChh------------hccCCCCCEEECcCCCCCCC--
Confidence 44556666666666655 223 23332 256666666665543221 34556666666666665532
Q ss_pred cccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCc
Q 040238 296 SWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIP 375 (549)
Q Consensus 296 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~ 375 (549)
..+..+++|+.|+|++|.+.++. .+..+++|+.|++++|.+.+. ..+..+++| +.|+|++|.+.+..|
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L-----~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI---TVLSRLTKL-----DTLSLEDNQISDIVP 170 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC---GGGGSCTTC-----SEEECCSSCCCCCGG
T ss_pred hhhccCCCCCEEEecCCCCCCCc----cccCCCccCEEECCCCccCCc---hhhcccCCC-----CEEECcCCcCCCchh
Confidence 24555566666666666555431 124555555555555555432 223333333 444555555544333
Q ss_pred hhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 376 ASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 376 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 45555555555555555432 23455555555555555554
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2e-17 Score=172.80 Aligned_cols=191 Identities=20% Similarity=0.284 Sum_probs=158.4
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
.+..+.++.+.+.+..+. ..+ ++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +.
T Consensus 22 ~l~~l~l~~~~i~~~~~~--~~L-~~L~~L~l~~n~i~~l-----------~-~l~~l~~L~~L~Ls~N~l~~~~~--l~ 84 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ--NEL-NSIDQIIANNSDIKSV-----------Q-GIQYLPNVTKLFLNGNKLTDIKP--LT 84 (605)
T ss_dssp HHHHHHTTCSCTTSEECH--HHH-TTCCCCBCTTCCCCCC-----------T-TGGGCTTCCEEECTTSCCCCCGG--GG
T ss_pred HHHHHhccCCCcccccch--hcC-CCCCEEECcCCCCCCC-----------h-HHccCCCCCEEEeeCCCCCCChh--hc
Confidence 355567777777654442 233 3799999999998643 2 35789999999999999997655 88
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIA 379 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~ 379 (549)
.+++|+.|+|++|.+.+.. .+..+++|+.|++++|++.+. ..+..+++| +.|+|++|.+++. ..+.
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L-----~~L~Ls~N~l~~l--~~l~ 150 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLS----SLKDLKKLKSLSLEHNGISDI---NGLVHLPQL-----ESLYLGNNKITDI--TVLS 150 (605)
T ss_dssp GCTTCCEEECCSSCCCCCT----TSTTCTTCCEEECTTSCCCCC---GGGGGCTTC-----SEEECCSSCCCCC--GGGG
T ss_pred cCCCCCEEECcCCCCCCCh----hhccCCCCCEEEecCCCCCCC---ccccCCCcc-----CEEECCCCccCCc--hhhc
Confidence 9999999999999998753 347899999999999998753 236666666 9999999999976 6789
Q ss_pred CCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCccc
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
.+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++. | .+..+++|+.|+|++|++++.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 99999999999999997665 89999999999999999964 3 589999999999999999865
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.8e-18 Score=152.92 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=109.7
Q ss_pred cEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcccccccccc
Q 040238 281 EFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNT 360 (549)
Q Consensus 281 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l 360 (549)
+++++++|+++ .+|..+. .+|++|++++|.+.+..+. +.|..++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~--------------------------~~~~~l~~L----- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSD--------------------------GLFGRLPHL----- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCS--------------------------CSGGGCTTC-----
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCc--------------------------cccccCCCC-----
Confidence 56777777775 3444332 2666666666666554332 223333333
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|+.|++++|++++..|..|..+++|++|++++|
T Consensus 57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 55556666666677788999999999999999999888888999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 441 HLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 441 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+|+|.++.......+....+.++...|+.|
T Consensus 137 ~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 137 PFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999988743211122222333444455544
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.8e-17 Score=146.36 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=104.1
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
+|++|++++|.++.. | .+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..+
T Consensus 45 ~L~~L~l~~n~i~~l-----------~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l-- 108 (197)
T 4ezg_A 45 SLTYITLANINVTDL-----------T-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL-- 108 (197)
T ss_dssp TCCEEEEESSCCSCC-----------T-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--
T ss_pred CccEEeccCCCccCh-----------H-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--
Confidence 677788877777521 2 24667777777777776653 2356677777777777777766444433
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCc-cccCCCcccC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNS-LQGHIPSCLG 403 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 403 (549)
..+++|++|++++|++ ++..+..+..+++|++|++++|. +. .+| .+.
T Consensus 109 ~~l~~L~~L~Ls~n~i------------------------------~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~ 156 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAH------------------------------DDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK 156 (197)
T ss_dssp TTCTTCCEEECCSSBC------------------------------BGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG
T ss_pred cCCCCCCEEEecCCcc------------------------------CcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc
Confidence 4556666665555554 44556677888899999999998 55 555 588
Q ss_pred CCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcc
Q 040238 404 NLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTG 444 (549)
Q Consensus 404 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 444 (549)
.+++|+.|++++|++++ ++ .+..+++|+.|++++|++..
T Consensus 157 ~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 88999999999999885 33 67888999999999998753
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.5e-17 Score=144.85 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=97.4
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCC
Q 040238 20 GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQK 99 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 99 (549)
..+++|++|++++|.+... | .+..+++|++|++++|.++. .+ . +..+++|++|++++|.++........ .+++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~-~~-~--l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN-YN-P--ISGLSNLERLRIMGKDVTSDKIPNLS-GLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC-CG-G--GTTCTTCCEEEEECTTCBGGGSCCCT-TCTT
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc-ch-h--hhcCCCCCEEEeECCccCcccChhhc-CCCC
Confidence 5567777777777777633 3 46777777777777776552 22 3 66777777777777766543222222 5677
Q ss_pred CCEEEccCCCCCC-CChhhcCCCCccEEEeecCc-CCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCcc
Q 040238 100 LKYIGLRSCNLTK-FPNFLQNQYHLLVLDLSDNR-IQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLL 177 (549)
Q Consensus 100 L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~ 177 (549)
|++|++++|.++. .+..+..+++|++|++++|. ++ .++ .+. .+++|+.|++++|.+..... .... ++|+
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~--~l~~L~~L~l~~n~i~~~~~---l~~l--~~L~ 184 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK--TLPELKSLNIQFDGVHDYRG---IEDF--PKLN 184 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG--GCSSCCEEECTTBCCCCCTT---GGGC--SSCC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc--CCCCCCEEECCCCCCcChHH---hccC--CCCC
Confidence 7777777777743 55667777777777777776 54 344 455 67777777777777776541 1222 2377
Q ss_pred EEEccCCcCCC
Q 040238 178 TFDLSSNNLQG 188 (549)
Q Consensus 178 ~L~L~~n~l~~ 188 (549)
.|++++|.+.+
T Consensus 185 ~L~l~~N~i~~ 195 (197)
T 4ezg_A 185 QLYAFSQTIGG 195 (197)
T ss_dssp EEEECBC----
T ss_pred EEEeeCcccCC
Confidence 77877777653
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.4e-17 Score=156.14 Aligned_cols=165 Identities=19% Similarity=0.172 Sum_probs=122.9
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
.+++++|.+++.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 23 ~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 23 KQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCS
T ss_pred HHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh----hccCCCCCEEECCC
Confidence 3567777777543 577888899999998888754 3 67888889999999988885433 67888899999999
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGF 162 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 162 (549)
|+++.++.... ++|++|++++|.++.++ .+..+++|++|++++|++++. + .+. .+++|+.|++++|.+.+.
T Consensus 95 N~l~~l~~~~~----~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~--~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 95 NRLKNLNGIPS----ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLG--FLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SCCSCCTTCCC----SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGG--GCTTCCEEECTTSCCCBC
T ss_pred CccCCcCcccc----CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHc--cCCCCCEEECCCCcCcch
Confidence 88877655432 78888899888887775 578888888888888888754 3 455 788888888888888776
Q ss_pred CCccccccCCCCCccEEEccCCcCCCC
Q 040238 163 DQHLVVLPANKGDLLTFDLSSNNLQGP 189 (549)
Q Consensus 163 ~~~~~~~~~~~~~L~~L~L~~n~l~~~ 189 (549)
. ..... ++|+.|++++|.+.+.
T Consensus 166 -~--~l~~l--~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -G--GLTRL--KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -T--TSTTC--CCCCEEEEEEEEEECC
T ss_pred -H--HhccC--CCCCEEeCCCCcccCC
Confidence 1 12222 2377777777766643
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.8e-17 Score=153.26 Aligned_cols=170 Identities=25% Similarity=0.296 Sum_probs=114.0
Q ss_pred CCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcc
Q 040238 218 LNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSW 297 (549)
Q Consensus 218 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~ 297 (549)
+..+..++++++.+.+. + .+..+. +|++|++++|.++.. + .+..+++|++|++++|++++..+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~-~L~~L~l~~n~i~~l-----------~-~l~~l~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELS-GVQNFNGDNSNIQSL-----------A-GMQFFTNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHT-TCSEEECTTSCCCCC-----------T-TGGGCTTCCEEECCSSCCCCCGG--
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcC-cCcEEECcCCCcccc-----------h-HHhhCCCCCEEECCCCccCCChh--
Confidence 44566677777777633 3 333333 677777777777532 2 34667777777777777775443
Q ss_pred cCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchh
Q 040238 298 LGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPAS 377 (549)
Q Consensus 298 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~ 377 (549)
+..+++|++|++++|.+.+.... .. ++|+.|++++|+ +++. +.
T Consensus 81 l~~l~~L~~L~L~~N~l~~l~~~----~~-~~L~~L~L~~N~------------------------------l~~~--~~ 123 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNLNGI----PS-ACLSRLFLDNNE------------------------------LRDT--DS 123 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCCTTC----CC-SSCCEEECCSSC------------------------------CSBS--GG
T ss_pred hccCCCCCEEECCCCccCCcCcc----cc-CcccEEEccCCc------------------------------cCCC--hh
Confidence 67777777777777776654321 11 555555555554 4432 24
Q ss_pred hcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCccc
Q 040238 378 IANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGL 445 (549)
Q Consensus 378 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 445 (549)
+..+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 67788888888888888754 3 577888888888888888865 5677888888888888888765
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=142.45 Aligned_cols=112 Identities=26% Similarity=0.288 Sum_probs=89.2
Q ss_pred CCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCC
Q 040238 329 KLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNL 408 (549)
Q Consensus 329 ~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 408 (549)
+++.|++++|++. .+| ..|..+++| +.|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|
T Consensus 32 ~l~~L~L~~n~i~-~ip-~~~~~l~~L-----~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVP-KELSNYKHL-----TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TCCEEECCSSCCC-SCC-GGGGGCTTC-----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCEEECCCCcCc-hhH-HHhhcccCC-----CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 3444444444443 333 334555555 666777777777777889999999999999999998888899999999
Q ss_pred CEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 409 ESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 409 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
+.|+|++|+++...+..|..+++|+.|++++|+|.|.+.
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 999999999997777789999999999999999998876
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=6.1e-19 Score=183.20 Aligned_cols=84 Identities=32% Similarity=0.451 Sum_probs=49.8
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccC-CcCccCCCCCcEEeccc
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQI-PQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~ 439 (549)
+.|++++|.++ .+|..|+.+++|++|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 44555555554 345556666666666666666663 44 5666666666666666666554 56666666666666666
Q ss_pred CcCcccCC
Q 040238 440 NHLTGLIP 447 (549)
Q Consensus 440 N~l~~~~p 447 (549)
|++++.+|
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 66665544
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=7.9e-17 Score=172.65 Aligned_cols=224 Identities=17% Similarity=0.145 Sum_probs=113.2
Q ss_pred CCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeC
Q 040238 147 QNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVL 226 (549)
Q Consensus 147 ~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 226 (549)
+.++.|++.+|.+...... . ++.++|+.+.+. .+++..|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~-------~--l~~l~Ls~~~i~-----------~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA-------L--LQHKKLSQYSID-----------EDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcchhh-------H--hhcCccCccccc-----------Ccccccccee-cChhhhccCCCCcEEEC
Confidence 4456666666655543222 1 555555555443 2333344444 55777888999999999
Q ss_pred cCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCE
Q 040238 227 SHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNV 306 (549)
Q Consensus 227 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 306 (549)
++|.+. .+|..++.+. +|++|+|++|.++ . +|..+..+++|++|+|++|.++ .+|..++.+++|++
T Consensus 232 s~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~----------lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYD-FLTRLYLNGNSLT-E----------LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp TTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-C----------CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred CCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-c----------cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 999998 7887777655 8999999999997 3 3555688999999999999999 67888999999999
Q ss_pred EEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCE
Q 040238 307 LILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQV 386 (549)
Q Consensus 307 L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~ 386 (549)
|+|++|.+..+ +.. +..+++|+.|++++|++.+.+|.. +...... ...+++++|.+++.+|. .|+.
T Consensus 298 L~L~~N~l~~l-p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~----~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 298 FYFFDNMVTTL-PWE--FGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVT----GLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp EECCSSCCCCC-CSS--TTSCTTCCCEECTTSCCCSHHHHH-HHHHHHH----HHHHHHHHCCCCCCCCC------C---
T ss_pred EECCCCCCCcc-Chh--hhcCCCccEEeCCCCccCCCChHH-Hhhcchh----hhHHhhccCcccCcCcc------ccce
Confidence 99999998755 333 488999999999999998877754 3322111 13467888888887775 4566
Q ss_pred EEccCC--------ccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 387 LNLQNN--------SLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 387 L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
|++++| .+.+..+..+..+..++...+++|-+.
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------CCC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 677776 333333344555666666777777664
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=1.5e-16 Score=138.62 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=106.3
Q ss_pred CCCCCCEEEccCCcCC-ccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCc-CCC
Q 040238 21 NLRSLEAIHIAKCNVS-GQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNT-TSQ 98 (549)
Q Consensus 21 ~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~~~ 98 (549)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+++. .. +..+++|++|++++|.++... +... .++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~ 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN--LPKLPKLKKLELSENRIFGGL--DMLAEKLP 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS--CCCCSSCCEEEEESCCCCSCC--CHHHHHCT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh--hccCCCCCEEECcCCcCchHH--HHHHhhCC
Confidence 3477899999998887 56677788888999999999888854 33 788889999999998777631 1112 478
Q ss_pred CCCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCC---cccccccCCCCcEEEccCCcCCCCCC
Q 040238 99 KLKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVP---KWLLDPNMQNLNALNISHNFLTGFDQ 164 (549)
Q Consensus 99 ~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~ 164 (549)
+|++|++++|.++.+| ..+..+++|++|++++|.+++..+ ..+. .+++|+.|++++|.+...+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK--LLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT--TCSSCCEETTEETTSCBCCS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH--hCccCcEecCCCCChhhccc
Confidence 8999999999888876 578888999999999999885544 3666 78999999999888776554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.1e-18 Score=179.17 Aligned_cols=134 Identities=20% Similarity=0.167 Sum_probs=79.7
Q ss_pred cCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCc-------------CccccCchhhcCCCCCCCeEe-ccCCcc
Q 040238 20 GNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS-------------YRGTIKLDVLLTSWKNLEFLA-LSLNRL 85 (549)
Q Consensus 20 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~~~l~~L~~L~-Ls~n~i 85 (549)
..+++|+.|+|++|.+. .+|+.++++++|+.|++++|. ..+..|.. +..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~--l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET--LQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH--HHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH--HHHHHhcccCcchhhccc
Confidence 56788999999999887 568888899999999987765 34444444 67777888887 565533
Q ss_pred ceeeccCCC------cCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcC
Q 040238 86 SVLTKATSN------TTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFL 159 (549)
Q Consensus 86 ~~~~~~~~~------~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~ 159 (549)
..+...... .....|+.|++++|.++.+|. +..+++|+.|++++|.++ .+|..+. .+++|+.|+|++|.+
T Consensus 423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~--~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALA--ALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGG--GCTTCCEEECCSSCC
T ss_pred chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhh--cCCCCCEEECCCCCC
Confidence 222211000 011235555555555555554 555555555555555555 4455554 555555555555544
Q ss_pred C
Q 040238 160 T 160 (549)
Q Consensus 160 ~ 160 (549)
+
T Consensus 499 ~ 499 (567)
T 1dce_A 499 E 499 (567)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=5.9e-16 Score=137.81 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=115.6
Q ss_pred CCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCc-ccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 246 LSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPS-WLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 246 L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
-+.+++++|.++. + |..+. .++++|++++|++++..+. .+..+++|++|++++|.+++..+..+
T Consensus 10 ~~~l~~s~~~l~~-i----------p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-- 74 (192)
T 1w8a_A 10 GTTVDCTGRGLKE-I----------PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-- 74 (192)
T ss_dssp TTEEECTTSCCSS-C----------CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--
T ss_pred CCEEEcCCCCcCc-C----------ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--
Confidence 4789999999953 3 33222 3899999999999977664 48899999999999999988766555
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
.++++|++|++++|++ ++..+..|.++++|++|++++|++++..|..|..
T Consensus 75 ~~l~~L~~L~Ls~N~l------------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 75 EGASHIQELQLGENKI------------------------------KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp TTCTTCCEEECCSCCC------------------------------CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred CCcccCCEEECCCCcC------------------------------CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 6677777666666655 3455666888899999999999999888889999
Q ss_pred CCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCCC
Q 040238 405 LPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIPP 448 (549)
Q Consensus 405 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 448 (549)
+++|+.|++++|++.+..+... -...++...+.++...|..|.
T Consensus 125 l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred CCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCCh
Confidence 9999999999999986544210 001133334455556666553
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=8.2e-17 Score=172.51 Aligned_cols=126 Identities=21% Similarity=0.141 Sum_probs=54.6
Q ss_pred CCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCcc---------ccCchhhcCCCCCCCeEeccCCccceeeccCC
Q 040238 23 RSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRG---------TIKLDVLLTSWKNLEFLALSLNRLSVLTKATS 93 (549)
Q Consensus 23 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~---------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 93 (549)
++++.|+|.+|.+... +.. .|+.++|+.+.+.+ ..+.. +..+++|+.|+|++|.+..++...+
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDS--KYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhh--hccCCCCcEEECCCCCCCCCChhhc
Confidence 5577777777766642 222 23333333333321 22222 5666667777777666665544322
Q ss_pred CcCCCCCCEEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCC
Q 040238 94 NTTSQKLKYIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 94 ~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 161 (549)
.+++|++|+|++|.++.+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.+..
T Consensus 245 --~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~--~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 245 --KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELG--SCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp --GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGG--GGTTCSEEECCSSCCCC
T ss_pred --CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhc--CCCCCCEEECCCCCCCc
Confidence 456666666666666666666666666666666666666 5566665 66666666666665543
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=4.5e-16 Score=151.38 Aligned_cols=222 Identities=15% Similarity=0.072 Sum_probs=141.6
Q ss_pred CCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCcc----CCcCCCcccccCC
Q 040238 194 PPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNF----FGTIPNTFIKERR 269 (549)
Q Consensus 194 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l----~~~~~~~~~~~~~ 269 (549)
+++|+.+++.. .+....+.+|.+|++|+.+++++|.+....+.++.. ..++..+....+.. .....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~-------- 169 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEH-------- 169 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTT--------
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcC-CCceEEecCcchhhhhccccccc--------
Confidence 56667777766 666666677888888888888888777444444443 32455555544221 11111
Q ss_pred CCccccCCCCCc-EEEccCCcC-CCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChh
Q 040238 270 IPRSLINCSKLE-FLGLGNNQI-SDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLK 347 (549)
Q Consensus 270 l~~~l~~~~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 347 (549)
..+..+..|+ .+++....- ............+++.+.+.++-...... .....+++|+.+++++|++. .+|..
T Consensus 170 --~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~--~l~~~~~~L~~l~L~~n~i~-~I~~~ 244 (329)
T 3sb4_A 170 --FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK--LIRDYMPNLVSLDISKTNAT-TIPDF 244 (329)
T ss_dssp --SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH--HHHHHCTTCCEEECTTBCCC-EECTT
T ss_pred --cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHH--HHHHhcCCCeEEECCCCCcc-eecHh
Confidence 1234555666 444443211 00000111123455666665442111100 00023678888888887754 67777
Q ss_pred hhhccccccccccceEEccCCcCcccCchhhcCCCCCC-EEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCc
Q 040238 348 SFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQ-VLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQL 426 (549)
Q Consensus 348 ~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 426 (549)
+|.++.+| +.+++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.|++++|+++...+..|
T Consensus 245 aF~~~~~L-----~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 245 TFAQKKYL-----LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp TTTTCTTC-----CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred hhhCCCCC-----CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 88888777 78888877 7777788899999999 999998 7776777899999999999999999997888899
Q ss_pred cCCCCCcEEec
Q 040238 427 VELTFLEFFNV 437 (549)
Q Consensus 427 ~~l~~L~~L~l 437 (549)
.++++|+.++.
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 99999998863
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=4.1e-16 Score=132.86 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=92.3
Q ss_pred CCCCCEEEccCCcCC-ccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCcccee-eccCCCcCCCC
Q 040238 22 LRSLEAIHIAKCNVS-GQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVL-TKATSNTTSQK 99 (549)
Q Consensus 22 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~~~ 99 (549)
.++|++|++++|.+. +..|..+..+++|++|++++|.+++. . .+..+++|++|++++|.++.. +.. ...+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A--NLPKLNKLKKLELSDNRVSGGLEVL--AEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T--TCCCCTTCCEEECCSSCCCSCTHHH--HHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h--hhhcCCCCCEEECCCCcccchHHHH--hhhCCC
Confidence 367888888888877 56667777888888888888887754 3 377788888888888876653 221 114678
Q ss_pred CCEEEccCCCCCCCC--hhhcCCCCccEEEeecCcCCCCCC---cccccccCCCCcEEEcc
Q 040238 100 LKYIGLRSCNLTKFP--NFLQNQYHLLVLDLSDNRIQGKVP---KWLLDPNMQNLNALNIS 155 (549)
Q Consensus 100 L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~L~ 155 (549)
|++|++++|.++.++ ..+..+++|++|++++|.+++..+ ..+. .+++|+.|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK--LLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHH--HCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHH--HCCCcccccCC
Confidence 888888888887765 677888888888888888875544 3566 78888888875
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.8e-15 Score=130.88 Aligned_cols=134 Identities=20% Similarity=0.201 Sum_probs=97.7
Q ss_pred CcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccc
Q 040238 280 LEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVN 359 (549)
Q Consensus 280 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~ 359 (549)
.+.+++++++++. +|..+ .++|++|++++|.+.+..+..+ ..+++|++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~--------------------------- 56 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVF--DKLTQLTK--------------------------- 56 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCSE---------------------------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHh--cCcccccE---------------------------
Confidence 4567777777663 33222 2466666666666655433322 34444544
Q ss_pred cceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 360 TTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 360 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 57 ---L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 57 ---LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp ---EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---EECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 45555555555666788899999999999999977777889999999999999999977666778899999999999
Q ss_pred CcCcccCCC
Q 040238 440 NHLTGLIPP 448 (549)
Q Consensus 440 N~l~~~~p~ 448 (549)
|++.|.+|.
T Consensus 134 N~~~~~~~~ 142 (177)
T 2o6r_A 134 NPWDCSCPR 142 (177)
T ss_dssp SCBCCCHHH
T ss_pred CCeeccCcc
Confidence 999988763
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=2.7e-15 Score=145.92 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=78.4
Q ss_pred ccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCC-EeeCCCCcccccCCcCccCCCCCcEEec
Q 040238 359 NTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLE-SLDLSNNKFSGQIPQQLVELTFLEFFNV 437 (549)
Q Consensus 359 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l 437 (549)
+++.+++++|+++.+.+.+|.++++|+++++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+..|.++++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 3499999999999998999999999999999998 7767778999999999 999999 788778899999999999999
Q ss_pred ccCcCcccCC
Q 040238 438 SDNHLTGLIP 447 (549)
Q Consensus 438 ~~N~l~~~~p 447 (549)
++|.++...+
T Consensus 305 ~~n~i~~I~~ 314 (329)
T 3sb4_A 305 TGDKITTLGD 314 (329)
T ss_dssp CSSCCCEECT
T ss_pred CCCccCccch
Confidence 9999885543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.5e-15 Score=129.87 Aligned_cols=135 Identities=22% Similarity=0.190 Sum_probs=85.5
Q ss_pred CCCCcEEEccCCcCC-CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 277 CSKLEFLGLGNNQIS-DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 277 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. . .+..+++|++|++++|++.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~N~l~-------------- 84 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S--NLPKLPKLKKLELSENRIF-------------- 84 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S--SCCCCSSCCEEEEESCCCC--------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h--hhccCCCCCEEECcCCcCc--------------
Confidence 356667777777665 45555566666777777777766554 1 2244555555555555543
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCC-CcccCCCCCCCEeeCCCCcccccCC---cCccCCCC
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHI-PSCLGNLPNLESLDLSNNKFSGQIP---QQLVELTF 431 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~ 431 (549)
+.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++
T Consensus 85 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 85 ----------------GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp ----------------SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred ----------------hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 334455566777777777777777432 2567777777777777777774444 36777777
Q ss_pred CcEEecccCcCccc
Q 040238 432 LEFFNVSDNHLTGL 445 (549)
Q Consensus 432 L~~L~l~~N~l~~~ 445 (549)
|++|++++|.+...
T Consensus 149 L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 149 LTYLDGYDREDQEA 162 (168)
T ss_dssp CCEETTEETTSCBC
T ss_pred CcEecCCCCChhhc
Confidence 77777777776643
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.3e-15 Score=126.49 Aligned_cols=129 Identities=22% Similarity=0.208 Sum_probs=90.6
Q ss_pred CCCCcEEEccCCcCC-CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccc
Q 040238 277 CSKLEFLGLGNNQIS-DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAM 355 (549)
Q Consensus 277 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l 355 (549)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. . .+..+++|++|++++|.+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~-------------- 77 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A--NLPKLNKLKKLELSDNRVS-------------- 77 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T--TCCCCTTCCEEECCSSCCC--------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h--hhhcCCCCCEEECCCCccc--------------
Confidence 467889999999887 66777778888888888888888765 2 2356677777777666654
Q ss_pred cccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccC-CCcccCCCCCCCEeeCCCCcccccCC---cCccCCCC
Q 040238 356 KIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGH-IPSCLGNLPNLESLDLSNNKFSGQIP---QQLVELTF 431 (549)
Q Consensus 356 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~ 431 (549)
+.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|++++..+ ..+..+++
T Consensus 78 ----------------~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 78 ----------------GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp ----------------SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred ----------------chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 33455556667777777777777642 23567777777777777777775544 45667777
Q ss_pred CcEEeccc
Q 040238 432 LEFFNVSD 439 (549)
Q Consensus 432 L~~L~l~~ 439 (549)
|+.|++++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 77777653
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.1e-13 Score=137.28 Aligned_cols=210 Identities=10% Similarity=0.052 Sum_probs=141.5
Q ss_pred CCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccC
Q 040238 208 TGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGN 287 (549)
Q Consensus 208 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 287 (549)
......+|.+|++|+.+++++|.+. .++...+.. .+|+.+.+..+ ++...... |.+|++|+.+++..
T Consensus 169 ~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~-~~L~~l~lp~~-l~~I~~~a----------F~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 169 EQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVY-AGIEEVLLPVT-LKEIGSQA----------FLKTSQLKTIEIPE 235 (401)
T ss_dssp CEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTT-CCCSEEECCTT-CCEECTTT----------TTTCTTCCCEECCT
T ss_pred cEehHHHhhCcccCCeeecCCCcce-EechhhEee-cccCEEEeCCc-hheehhhH----------hhCCCCCCEEecCC
Confidence 3344567788888888888888887 455444444 37888888744 44333333 46788888888887
Q ss_pred CcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccc----cccChhhhhccccccccccceE
Q 040238 288 NQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFI----GTLPLKSFLCWNAMKIVNTTGI 363 (549)
Q Consensus 288 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~----~~~~~~~~~~l~~l~~~~l~~L 363 (549)
+ ++.....+|.+ .+|+.+.+. +.+..+....+ .++++|+.+++.+|.+. ..++..+|.++.+| +.+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF--~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-----~~l 305 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAF--YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-----ARF 305 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTT--TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC-----CEE
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHh--hCCCCCCEEEeCCccccCCcccEECHHHhhCCccC-----CeE
Confidence 5 45455666766 678888884 44555544444 77888888888776643 23666677777776 666
Q ss_pred EccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCC-CCcEEecccCcC
Q 040238 364 ILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT-FLEFFNVSDNHL 442 (549)
Q Consensus 364 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l 442 (549)
++. +.++.+...+|.++++|+.++|..+ ++.....+|.++ +|+.+++++|.+....+..|.+++ .++.|.+..+.+
T Consensus 306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 306 EIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 666 3466666677777778888877554 554556677777 788888877777766666677764 667777776654
Q ss_pred c
Q 040238 443 T 443 (549)
Q Consensus 443 ~ 443 (549)
.
T Consensus 383 ~ 383 (401)
T 4fdw_A 383 E 383 (401)
T ss_dssp H
T ss_pred H
Confidence 3
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=3.1e-13 Score=134.75 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=81.1
Q ss_pred hhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCC
Q 040238 213 SWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISD 292 (549)
Q Consensus 213 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~ 292 (549)
..|.++..|+.+.+..+... +....+... +|+.+.+... .+.... ..+..+..++.+.+..+...
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~-~l~~i~ip~~-~~~i~~----------~~f~~~~~l~~~~~~~~~~~- 266 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYY--LGDFALSKT-GVKNIIIPDS-FTELGK----------SVFYGCTDLESISIQNNKLR- 266 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCE--ECTTTTTTC-CCCEEEECTT-CCEECS----------STTTTCSSCCEEEECCTTCE-
T ss_pred hhhccccccceeecCCCceE--eehhhcccC-CCceEEECCC-ceeccc----------ccccccccceeEEcCCCcce-
Confidence 44556666666666554322 112222222 4666655432 111111 12355666777766665433
Q ss_pred CcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcc
Q 040238 293 TFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDS 372 (549)
Q Consensus 293 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~ 372 (549)
.....|..+..++.+....+.+. ...+..+.+|+.+.+.++ ...++..+|.++.+| +.+++.. .++.
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i~-----~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L-----~~i~lp~-~v~~ 333 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIVP-----EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSL-----VSIDLPY-LVEE 333 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEEC-----TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTC-----CEECCCT-TCCE
T ss_pred eeccccccccccceeccCceeec-----cccccccccccccccccc--cceechhhhcCCCCC-----CEEEeCC-cccE
Confidence 44455666666666666554321 112355666666666543 123444444444444 3444432 2333
Q ss_pred cCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCC
Q 040238 373 VIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415 (549)
Q Consensus 373 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 415 (549)
+...+|.++++|+.+++..+ ++.....+|.++++|+.+++..
T Consensus 334 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 334 IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 33444555555555555444 3333334455555555555543
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=1.1e-14 Score=127.59 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=111.8
Q ss_pred ccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcC
Q 040238 17 GSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTT 96 (549)
Q Consensus 17 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 96 (549)
..+.++++|++|++++|.+... +......++|++|++++|.+++. .. +..+++|++|++++|.++.++...+ ..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~--l~~l~~L~~L~Ls~N~l~~~~~~~~-~~ 86 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DG--FPLLRRLKTLLVNNNRICRIGEGLD-QA 86 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CC--CCCCSSCCEEECCSSCCCEECSCHH-HH
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cc--cccCCCCCEEECCCCcccccCcchh-hc
Confidence 4577889999999999999865 44333345999999999999864 34 8999999999999999887754321 26
Q ss_pred CCCCCEEEccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCCcc----cccccCCCCcEEEccCCcCCC
Q 040238 97 SQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPKW----LLDPNMQNLNALNISHNFLTG 161 (549)
Q Consensus 97 ~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~~~----~~~~~l~~L~~L~L~~n~~~~ 161 (549)
+++|++|++++|.++.+|. .+..+++|++|++++|+++ ..|.. +. .+++|+.|++++|....
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~--~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIY--KVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHH--HCTTCSEETTEECCHHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHH--HCCccceeCCCcCCHHH
Confidence 8899999999999999987 7889999999999999997 45553 66 89999999999987643
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.3e-14 Score=125.58 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=72.9
Q ss_pred cccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCChh-hcCC
Q 040238 42 SLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPNF-LQNQ 120 (549)
Q Consensus 42 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l 120 (549)
.+.++++|++|++++|.++. ++. +....++|++|++++|.++.+. ....+++|++|++++|.++.+|.. +..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~--~~~~~~~L~~L~Ls~N~l~~~~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN--LGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC--GGGGTTCCSEEECCSSCCCEEC---CCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred hcCCcCCceEEEeeCCCCch-hHH--hhhcCCCCCEEECCCCCCCccc---ccccCCCCCEEECCCCcccccCcchhhcC
Confidence 34556666666666666662 221 1222336666666666666551 122456666666666666666543 3566
Q ss_pred CCccEEEeecCcCCCCCCc--ccccccCCCCcEEEccCCcCCCCCCcc--ccccCCCCCccEEEccCCcCC
Q 040238 121 YHLLVLDLSDNRIQGKVPK--WLLDPNMQNLNALNISHNFLTGFDQHL--VVLPANKGDLLTFDLSSNNLQ 187 (549)
Q Consensus 121 ~~L~~L~l~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~~~~~~L~~L~L~~n~l~ 187 (549)
++|++|++++|.++ .+|. .+. .+++|+.|++++|.+...+... ..... ++|+.||++.|...
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~--~l~~L~~L~l~~N~i~~~~~~~~~~~~~l--~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLA--SLKSLTYLCILRNPVTNKKHYRLYVIYKV--PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGG--GCTTCCEEECCSSGGGGSTTHHHHHHHHC--TTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhh--cCCCCCEEEecCCCCCCcHhHHHHHHHHC--CccceeCCCcCCHH
Confidence 66666666666664 3443 444 5666666666666665443320 01112 22666666666543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=1.5e-12 Score=129.32 Aligned_cols=265 Identities=13% Similarity=0.121 Sum_probs=159.1
Q ss_pred CCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCCCCCC
Q 040238 22 LRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTSQKLK 101 (549)
Q Consensus 22 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 101 (549)
+..++.+.+.++ +..+...+|.++ +|+.+.+..+ ++ .++.. .|.++ +|+.+.+.. .+..++...+. .|.+|+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~-aF~~~-~L~~i~lp~-~l~~I~~~aF~-~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDM-AFFNS-TVQEIVFPS-TLEQLKEDIFY-YCYNLK 183 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTT-TTTTC-CCCEEECCT-TCCEECSSTTT-TCTTCC
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHH-hcCCC-CceEEEeCC-CccEehHHHhh-CcccCC
Confidence 466777777653 555566677775 6777777665 55 33322 35554 577777775 56666665554 577788
Q ss_pred EEEccCCCCCCCChhhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEc
Q 040238 102 YIGLRSCNLTKFPNFLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDL 181 (549)
Q Consensus 102 ~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L 181 (549)
.+++.+|.++.++.......+|+.+.+..+ +.......|. ++++|+.+++..+ +..+....+.. .+|+.+.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~--~~~~L~~l~l~~~-l~~I~~~aF~~----~~L~~i~l 255 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFL--KTSQLKTIEIPEN-VSTIGQEAFRE----SGITTVKL 255 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTT--TCTTCCCEECCTT-CCEECTTTTTT----CCCSEEEE
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhh--CCCCCCEEecCCC-ccCcccccccc----CCccEEEe
Confidence 888877777777764444677777777644 5545556666 7777887777653 44444332222 12555555
Q ss_pred cCCcCCCCCCCCCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCC----CcCCcchhcCCCCCCeeecCCCccC
Q 040238 182 SSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLS----GLLPQCLGNSSDELSVLDLQGNNFF 257 (549)
Q Consensus 182 ~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~~~~~~~~L~~L~L~~n~l~ 257 (549)
.. .+......+|.++++|+.+++.++.+. ..++...+...++|+.+++.+ .++
T Consensus 256 p~----------------------~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 256 PN----------------------GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp ET----------------------TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred CC----------------------CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 32 223344566777888888888776553 123333344444677777763 344
Q ss_pred CcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCC-CCceeeCC
Q 040238 258 GTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFS-KLRIIDLS 336 (549)
Q Consensus 258 ~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~ls 336 (549)
...... |.+|++|+.+++..+ ++.....+|.++ +|+.+++.+|.+..+....+ .+++ +++.+.+.
T Consensus 313 ~I~~~a----------F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~~~~~~l~~l~vp 378 (401)
T 4fdw_A 313 ILGQGL----------LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--YGFPDDITVIRVP 378 (401)
T ss_dssp EECTTT----------TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--CCSCTTCCEEEEC
T ss_pred EEhhhh----------hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--cCCCCCccEEEeC
Confidence 333333 366777777777554 554556677777 77777777776665544433 4443 56666665
Q ss_pred CCc
Q 040238 337 NNI 339 (549)
Q Consensus 337 ~n~ 339 (549)
.+.
T Consensus 379 ~~~ 381 (401)
T 4fdw_A 379 AES 381 (401)
T ss_dssp GGG
T ss_pred HHH
Confidence 544
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=2.4e-13 Score=120.75 Aligned_cols=110 Identities=23% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccC
Q 040238 220 ILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLG 299 (549)
Q Consensus 220 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 299 (549)
+|++|++++|.++ .+|..+..+. +|++|++++|.+++..+.. |..+++|++|++++|++++..+..|.
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~----------f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQS----------FSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhH----------ccCCCCCCEEECCCCccCEeCHHHhC
Confidence 3444444444444 3333333322 4555555555444333222 24455555555555555555555555
Q ss_pred CCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccc
Q 040238 300 TLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGT 343 (549)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 343 (549)
.+++|++|+|++|.+..+.+..+ ..+++|+.|++++|++...
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECS
T ss_pred CCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecC
Confidence 55566666666665555443333 4556666666666665443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=5.5e-14 Score=122.24 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=80.4
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 77777788888888888999999999999999999877788899999999999999999877778999999999999999
Q ss_pred cCcccCCCC
Q 040238 441 HLTGLIPPG 449 (549)
Q Consensus 441 ~l~~~~p~~ 449 (549)
+++|.++..
T Consensus 113 ~~~c~c~~l 121 (170)
T 3g39_A 113 PWDCACSDI 121 (170)
T ss_dssp CBCTTBGGG
T ss_pred CCCCCchhH
Confidence 999988743
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.7e-13 Score=118.02 Aligned_cols=114 Identities=21% Similarity=0.190 Sum_probs=60.8
Q ss_pred CCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCccc
Q 040238 219 NILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWL 298 (549)
Q Consensus 219 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 298 (549)
++|++|++++|.+.+..+..+.. .++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSQNQIQSLPDGV----------FDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTT----------TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCcEEEeCCCcccEeCHHHhcC-cccccEEECCCCcceEeChhH----------ccCCCccCEEECCCCCccccCHHHh
Confidence 34455555555554322222222 224555555555554332222 2455666666666666665555555
Q ss_pred CCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccC
Q 040238 299 GTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLP 345 (549)
Q Consensus 299 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 345 (549)
..+++|++|++++|.+.++.+..+ ..+++|+.|++++|++.+..+
T Consensus 97 ~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred hCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 666666666666666665544333 556666777777776665444
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=2e-12 Score=128.92 Aligned_cols=199 Identities=11% Similarity=0.113 Sum_probs=145.5
Q ss_pred chhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCC
Q 040238 212 PSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQIS 291 (549)
Q Consensus 212 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~ 291 (549)
...|.++++|+.+.+..+ +. .++...+.....|+.+.+..+... +......+.+|+.+.+.... +
T Consensus 178 ~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~------------i~~~~~~~~~l~~i~ip~~~-~ 242 (394)
T 4fs7_A 178 NGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY------------LGDFALSKTGVKNIIIPDSF-T 242 (394)
T ss_dssp TTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE------------ECTTTTTTCCCCEEEECTTC-C
T ss_pred cccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE------------eehhhcccCCCceEEECCCc-e
Confidence 356778888999988776 44 333333343447888877665332 11122446789999887643 3
Q ss_pred CCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCc
Q 040238 292 DTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFD 371 (549)
Q Consensus 292 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~ 371 (549)
......|.++..|+.+.+..+.. .+.... +..+..++.+...... ++..+|..+.++ +.+.+..+ ++
T Consensus 243 ~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~--F~~~~~l~~~~~~~~~----i~~~~F~~~~~L-----~~i~l~~~-i~ 309 (394)
T 4fs7_A 243 ELGKSVFYGCTDLESISIQNNKL-RIGGSL--FYNCSGLKKVIYGSVI----VPEKTFYGCSSL-----TEVKLLDS-VK 309 (394)
T ss_dssp EECSSTTTTCSSCCEEEECCTTC-EECSCT--TTTCTTCCEEEECSSE----ECTTTTTTCTTC-----CEEEECTT-CC
T ss_pred ecccccccccccceeEEcCCCcc-eeeccc--cccccccceeccCcee----eccccccccccc-----cccccccc-cc
Confidence 35556788899999999987643 333333 4788889988887653 566778888888 77777654 77
Q ss_pred ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 372 SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 372 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.....+|.++.+|+.+++..+
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 677789999999999999865 66566789999999999999887 77677789999999999999765
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=1.8e-13 Score=119.35 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=78.1
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
+.|++++|.+++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 67777777777788888999999999999999999777777899999999999999999776667999999999999999
Q ss_pred cCcccCCC
Q 040238 441 HLTGLIPP 448 (549)
Q Consensus 441 ~l~~~~p~ 448 (549)
+|.+.++.
T Consensus 116 ~~~c~~~~ 123 (174)
T 2r9u_A 116 PWDCECRD 123 (174)
T ss_dssp CBCTTBGG
T ss_pred Cccccccc
Confidence 99988763
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=5.8e-16 Score=138.73 Aligned_cols=141 Identities=19% Similarity=0.216 Sum_probs=90.7
Q ss_pred EEECCCCCCCCcccc------cccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCC
Q 040238 3 FLYLRLNNFSGDLLG------SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLE 76 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~ 76 (549)
.++++++.+++..|. .|..+++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|.. +..+++|+
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~--~~~~~~L~ 96 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL--DAVADTLE 96 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH--HHHHHHCS
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch--hhcCCcCC
Confidence 345555555555444 67777777777777777765 34 6677777777777777776 44443 55567777
Q ss_pred eEeccCCccceeeccCCCcCCCCCCEEEccCCCCCCCCh--hhcCCCCccEEEeecCcCCCCCCc----------ccccc
Q 040238 77 FLALSLNRLSVLTKATSNTTSQKLKYIGLRSCNLTKFPN--FLQNQYHLLVLDLSDNRIQGKVPK----------WLLDP 144 (549)
Q Consensus 77 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~~~~~----------~~~~~ 144 (549)
+|++++|.++.++. ...+++|++|++++|.++.++. .+..+++|++|++++|++++..|. .+.
T Consensus 97 ~L~L~~N~l~~l~~---~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~-- 171 (198)
T 1ds9_A 97 ELWISYNQIASLSG---IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK-- 171 (198)
T ss_dssp EEEEEEEECCCHHH---HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH--
T ss_pred EEECcCCcCCcCCc---cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH--
Confidence 77777776666542 1256677777777777766654 566777777777777776544333 144
Q ss_pred cCCCCcEEE
Q 040238 145 NMQNLNALN 153 (549)
Q Consensus 145 ~l~~L~~L~ 153 (549)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 567777665
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.8e-15 Score=135.50 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=95.9
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
.++.++++.+.+++..|.. ..+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+..
T Consensus 19 ~l~~l~l~~~~l~~~~~~l----~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-------- 84 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPI----EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-------- 84 (198)
T ss_dssp CCCCTTCSEEECCBCCTTC----CCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS--------
T ss_pred cccCcchheeEeccccCcH----hhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc--------
Confidence 5666666666666554431 2334445556666666666666654 33 45555556666665555542
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCC-cccC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIP-SCLG 403 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 403 (549)
+|. .+..++++ +.|++++|.+++. | .+..+++|++|++++|++.+..+ ..+.
T Consensus 85 -------------------l~~-~~~~~~~L-----~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~ 137 (198)
T 1ds9_A 85 -------------------IEN-LDAVADTL-----EELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLA 137 (198)
T ss_dssp -------------------CSS-HHHHHHHC-----SEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHT
T ss_pred -------------------ccc-hhhcCCcC-----CEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHh
Confidence 221 23333344 6666666666652 3 46777888888888888874322 4677
Q ss_pred CCCCCCEeeCCCCcccccCCcC----------ccCCCCCcEEecccCcCc
Q 040238 404 NLPNLESLDLSNNKFSGQIPQQ----------LVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 404 ~l~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~N~l~ 443 (549)
.+++|+.|++++|++.+..|.. +..+++|+.|| +|+++
T Consensus 138 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888888887665543 67788888876 66665
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.6e-12 Score=111.92 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=49.9
Q ss_pred EEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccC
Q 040238 3 FLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSL 82 (549)
Q Consensus 3 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~ 82 (549)
.+++++|.++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|++++. +.. .|..+++|++|++++
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~-~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTG-VFDKLTQLTQLDLND 90 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTT-TTTTCTTCCEEECCS
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-Chh-HhCCcchhhEEECCC
Confidence 4555555554 3343332 5555566665555555555555555555555555555532 222 245555555555555
Q ss_pred CccceeeccCCCcCCCCCCEEEccCCCC
Q 040238 83 NRLSVLTKATSNTTSQKLKYIGLRSCNL 110 (549)
Q Consensus 83 n~i~~~~~~~~~~~~~~L~~L~l~~n~l 110 (549)
|.|+.++...+. .+++|++|++++|.+
T Consensus 91 N~l~~l~~~~~~-~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLKSIPRGAFD-NLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCCCCCTTTTT-TCTTCSEEECCSSCB
T ss_pred CccceeCHHHhc-cccCCCEEEeCCCCc
Confidence 544443332111 234444444444444
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4.6e-12 Score=109.98 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=45.6
Q ss_pred cEEECCCCCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEecc
Q 040238 2 QFLYLRLNNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALS 81 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls 81 (549)
+++++++|.++. +|..+. ++|++|+|++|.+.+..|..|.++++|++|++++|++++..+.. |..+++|++|+++
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--FDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh--ccCCCCCCEEECC
Confidence 456666666653 343332 55666666666666555566666666666666666665333322 4555555555555
Q ss_pred CCccceee
Q 040238 82 LNRLSVLT 89 (549)
Q Consensus 82 ~n~i~~~~ 89 (549)
+|+++.++
T Consensus 87 ~N~l~~~~ 94 (170)
T 3g39_A 87 DNQLKSIP 94 (170)
T ss_dssp SSCCCCCC
T ss_pred CCccCEeC
Confidence 55444433
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=3.9e-10 Score=112.21 Aligned_cols=332 Identities=10% Similarity=0.102 Sum_probs=150.4
Q ss_pred cccccccCCC-CCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCc---cceeeccCCCcCCCCCCEEEccCCCCCCC
Q 040238 38 QITSSLRNLS-QLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNR---LSVLTKATSNTTSQKLKYIGLRSCNLTKF 113 (549)
Q Consensus 38 ~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~~~~L~~L~l~~n~l~~l 113 (549)
+...+|.++. .|+.+.+..+ ++..-.. .|.++.+|+.+.+..|. ++.++...+. .+.+|+.+.+..+ ++.+
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~--AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~-~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSN--AFYNCTSLKRVTIQDNKPSCVKKIGRQAFM-FCSELTDIPILDS-VTEI 128 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTT--TTTTCTTCCEEEEGGGCCCCCCEECTTTTT-TCTTCCBCGGGTT-CSEE
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHH--HhhCCccCceEeecCCCCCeeeEechhhch-hcccceeeccCCc-ccee
Confidence 3345565553 4666666543 4422222 36666666666666542 4455554443 4556665555443 3333
Q ss_pred Ch-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCccccccCCCCCccEEEccCCcCCCCCCC
Q 040238 114 PN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQHLVVLPANKGDLLTFDLSSNNLQGPLPV 192 (549)
Q Consensus 114 ~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 192 (549)
+. .+..+.+|+.+.+..+- .......|. .+..|+.+.+..+ +..+....+. . ..|+.+.+..+...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~--~c~~L~~i~~~~~-~~~I~~~aF~--~--~~l~~i~ip~~~~~----- 195 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-TSVADGMFS--YCYSLHTVTLPDS-VTAIEERAFT--G--TALTQIHIPAKVTR----- 195 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTT--TCTTCCEEECCTT-CCEECTTTTT--T--CCCSEEEECTTCCE-----
T ss_pred hhhhhhhhccccccccccee-eeeccccee--cccccccccccce-eeEecccccc--c--cceeEEEECCcccc-----
Confidence 32 45566666666665432 223334444 6666777666543 3333322221 1 12555554332111
Q ss_pred CCCCcceeecccCCCCCcCchhhhcCCCCCeEeCcCCcCCCcCCcchhcCCCCCCeeecCCCccCCcCCCcccccCCCCc
Q 040238 193 PPPGTIHYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNSSDELSVLDLQGNNFFGTIPNTFIKERRIPR 272 (549)
Q Consensus 193 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 272 (549)
....+|..+..++.......... .....+.............
T Consensus 196 -----------------i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------- 237 (394)
T 4gt6_A 196 -----------------IGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIR-------------------- 237 (394)
T ss_dssp -----------------ECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEE--------------------
T ss_pred -----------------cccchhhhccccceecccccccc-cccceeecccccccccccc--------------------
Confidence 22234555556665555443322 1111111111000000000
Q ss_pred cccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhcc
Q 040238 273 SLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCW 352 (549)
Q Consensus 273 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l 352 (549)
......+..+.+... ++.....+|.++.+|+.+.+.++.. .+... .+.++++|+.+++..+ ...++..+|.++
T Consensus 238 -~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~--aF~~c~~L~~i~l~~~--i~~I~~~aF~~c 310 (394)
T 4gt6_A 238 -YPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTG--AFMNCPALQDIEFSSR--ITELPESVFAGC 310 (394)
T ss_dssp -CCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTT--TTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred -cccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCc--ccccccccccccCCCc--ccccCceeecCC
Confidence 001112222222211 1112233444444555554433221 12111 2244455555555322 123444555555
Q ss_pred ccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCC
Q 040238 353 NAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFL 432 (549)
Q Consensus 353 ~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 432 (549)
.+| +.+++.. .++.+...+|.++.+|+++.+..+ ++..-..+|.++++|+.+++.++.... ..+....+|
T Consensus 311 ~~L-----~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L 380 (394)
T 4gt6_A 311 ISL-----KSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGL 380 (394)
T ss_dssp TTC-----CEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC
T ss_pred CCc-----CEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCC
Confidence 555 4555543 244455567888888888888654 554556778888888888888775431 356667777
Q ss_pred cEEecccCcC
Q 040238 433 EFFNVSDNHL 442 (549)
Q Consensus 433 ~~L~l~~N~l 442 (549)
+.+.+..|.+
T Consensus 381 ~~i~i~~~~~ 390 (394)
T 4gt6_A 381 QNLPVAPGSI 390 (394)
T ss_dssp ----------
T ss_pred CEEEeCCCCE
Confidence 7777766543
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.28 E-value=1e-09 Score=109.23 Aligned_cols=335 Identities=12% Similarity=0.146 Sum_probs=190.5
Q ss_pred CCCcccccccCCC-CCCEEEccCCcCCccccccccCCCCCCEEeCCCCc---CccccCchhhcCCCCCCCeEeccCCccc
Q 040238 11 FSGDLLGSIGNLR-SLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS---YRGTIKLDVLLTSWKNLEFLALSLNRLS 86 (549)
Q Consensus 11 l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~~l~~L~~L~Ls~n~i~ 86 (549)
++.+-..+|.+++ .|+.+.+..+ +..+...+|.++.+|+.+.+..|. ++ .+... .|..+.+|+.+.+..+ ++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~-aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQ-AFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTT-TTTTCTTCCBCGGGTT-CS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-Eechh-hchhcccceeeccCCc-cc
Confidence 3444456788885 5999999865 777778999999999999987653 44 33333 4889999999888765 56
Q ss_pred eeeccCCCcCCCCCCEEEccCCCCCCCCh-hhcCCCCccEEEeecCcCCCCCCcccccccCCCCcEEEccCCcCCCCCCc
Q 040238 87 VLTKATSNTTSQKLKYIGLRSCNLTKFPN-FLQNQYHLLVLDLSDNRIQGKVPKWLLDPNMQNLNALNISHNFLTGFDQH 165 (549)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 165 (549)
.++...+. .+.+|+.+.+..+ +..++. .+..+..|+.+.+..+ ++......|. ..+|+.+.+..+- ..+...
T Consensus 127 ~I~~~aF~-~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~---~~~l~~i~ip~~~-~~i~~~ 199 (394)
T 4gt6_A 127 EIDSEAFH-HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT---GTALTQIHIPAKV-TRIGTN 199 (394)
T ss_dssp EECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT---TCCCSEEEECTTC-CEECTT
T ss_pred eehhhhhh-hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc---ccceeEEEECCcc-cccccc
Confidence 66666554 6889999999754 444543 6778889999988765 3334444553 4678888886542 222222
Q ss_pred cccccCCCCCccEEEccCCcCCCCCCCCCCCcceeecccCCCCCcCchhh-hcCCCCCeEeCcCCcCCCcCCcchhcCCC
Q 040238 166 LVVLPANKGDLLTFDLSSNNLQGPLPVPPPGTIHYLASNNSLTGEIPSWI-CNLNILESLVLSHNNLSGLLPQCLGNSSD 244 (549)
Q Consensus 166 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 244 (549)
. +..+.. ++............ ...+ ........-.... + . ..
T Consensus 200 a-f~~c~~--l~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~-------~----~-~~ 242 (394)
T 4gt6_A 200 A-FSECFA--LSTITSDSESYPAI----------------------DNVLYEKSANGDYALIRY-------P----S-QR 242 (394)
T ss_dssp T-TTTCTT--CCEEEECCSSSCBS----------------------SSCEEEECTTSCEEEEEC-------C----T-TC
T ss_pred h-hhhccc--cceecccccccccc----------------------cceeeccccccccccccc-------c----c-cc
Confidence 1 112222 55544443322100 0000 0000000000000 0 0 00
Q ss_pred CCCeeecCCCccCCcCCCcccccCCCCccccCCCCCcEEEccCCcCCCCcCcccCCCCCCCEEEccCcccccccCCCCCc
Q 040238 245 ELSVLDLQGNNFFGTIPNTFIKERRIPRSLINCSKLEFLGLGNNQISDTFPSWLGTLPNLNVLILRSNIFYGIIKEPRTD 324 (549)
Q Consensus 245 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (549)
.+..+.+.. .++... ..+|..|..|+.+.+.++... ....+|.++++|+.+.+. +.+..+....+
T Consensus 243 ~~~~~~ip~-~v~~i~----------~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF-- 307 (394)
T 4gt6_A 243 EDPAFKIPN-GVARIE----------THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVF-- 307 (394)
T ss_dssp CCSEEECCT-TEEEEC----------TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTT--
T ss_pred ccceEEcCC-cceEcc----------cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceee--
Confidence 122222211 111111 112356667777776654332 444566677777777774 33444433333
Q ss_pred cCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCchhhcCCCCCCEEEccCCccccCCCcccCC
Q 040238 325 CGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGN 404 (549)
Q Consensus 325 ~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 404 (549)
.++.+|+.+++..+ ...+...+|.++.+| +.+.+..+ ++.+...+|.++++|+.+++.++.... .++..
T Consensus 308 ~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L-----~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~ 376 (394)
T 4gt6_A 308 AGCISLKSIDIPEG--ITQILDDAFAGCEQL-----ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAIST 376 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTC-----CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBC
T ss_pred cCCCCcCEEEeCCc--ccEehHhHhhCCCCC-----CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhc
Confidence 66777777777654 235666777777777 67777543 666667889999999999999886542 56778
Q ss_pred CCCCCEeeCCCCccc
Q 040238 405 LPNLESLDLSNNKFS 419 (549)
Q Consensus 405 l~~L~~L~l~~n~l~ 419 (549)
...|+.+.+..+.+.
T Consensus 377 ~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 377 DSGLQNLPVAPGSID 391 (394)
T ss_dssp CCCC-----------
T ss_pred cCCCCEEEeCCCCEE
Confidence 889999988877553
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=9.9e-14 Score=136.36 Aligned_cols=133 Identities=19% Similarity=0.135 Sum_probs=55.4
Q ss_pred cEEECCCCCCCCccccccc-----CCCCCCEEEccCCcCCccccccc-cCCCCCCEEeCCCCcCccccCch--hhc-CCC
Q 040238 2 QFLYLRLNNFSGDLLGSIG-----NLRSLEAIHIAKCNVSGQITSSL-RNLSQLFFLDLAKNSYRGTIKLD--VLL-TSW 72 (549)
Q Consensus 2 ~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~--~~~-~~l 72 (549)
++|+|++|.++......+. ..++|++|+|++|.+.......+ ..+++|++|+|++|.+....... ..+ ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 4555555555433222222 12455555555555543222222 22344555555555554221111 001 234
Q ss_pred CCCCeEeccCCccceeeccCCC---cCCCCCCEEEccCCCCCC-----CChhhcCCCCccEEEeecCcCC
Q 040238 73 KNLEFLALSLNRLSVLTKATSN---TTSQKLKYIGLRSCNLTK-----FPNFLQNQYHLLVLDLSDNRIQ 134 (549)
Q Consensus 73 ~~L~~L~Ls~n~i~~~~~~~~~---~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~l~ 134 (549)
++|++|+|++|.|+..+..... ..+++|++|++++|.++. ++..+...++|++|++++|.++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 4555555555544432221111 023445555555555421 2233344445555555555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.3e-11 Score=120.71 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=61.5
Q ss_pred ceEEccC-CcCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEeccc
Q 040238 361 TGIILSN-NSFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSD 439 (549)
Q Consensus 361 ~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 439 (549)
+.|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 5555654 666666666777777788888888877777777777777788888888877755555555555 77888888
Q ss_pred CcCcccCC
Q 040238 440 NHLTGLIP 447 (549)
Q Consensus 440 N~l~~~~p 447 (549)
|+|.|.++
T Consensus 113 N~~~c~c~ 120 (347)
T 2ifg_A 113 NPLHCSCA 120 (347)
T ss_dssp SCCCCCGG
T ss_pred CCccCCCc
Confidence 87777654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=3.3e-13 Score=132.66 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=59.4
Q ss_pred ceEEccCCcCccc----CchhhcCCCCCCEEEccCCccccC----CCcccCCCCCCCEeeCCCCccccc----CCcCccC
Q 040238 361 TGIILSNNSFDSV----IPASIANLKGLQVLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSGQ----IPQQLVE 428 (549)
Q Consensus 361 ~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~ 428 (549)
+.|+|++|.++.. ++..+..+++|++|+|++|.+.+. +++.+...++|+.|+|++|.++.. ++..+..
T Consensus 158 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~ 237 (372)
T 3un9_A 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE 237 (372)
T ss_dssp CEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHH
T ss_pred ceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHh
Confidence 5566666655432 334456778889999999888742 245667778899999999988753 3344556
Q ss_pred CCCCcEEecccCcCcc
Q 040238 429 LTFLEFFNVSDNHLTG 444 (549)
Q Consensus 429 l~~L~~L~l~~N~l~~ 444 (549)
.++|++|++++|+++.
T Consensus 238 ~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 238 HPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTSSCCH
T ss_pred CCCCCEEeccCCCCCH
Confidence 6889999999998864
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=4.8e-11 Score=116.79 Aligned_cols=108 Identities=20% Similarity=0.201 Sum_probs=91.6
Q ss_pred ceEEccCC-cCcccCchhhcCCCCCCEEEccC-CccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecc
Q 040238 361 TGIILSNN-SFDSVIPASIANLKGLQVLNLQN-NSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVS 438 (549)
Q Consensus 361 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 438 (549)
..++++++ .+++ +|. +..+++|++|+|++ |.+.+..+..|+++++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45677777 7775 666 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCCCCCccCCCccCCCCCCCCCC
Q 040238 439 DNHLTGLIPPGKQFATFDNTSFDSNSGLCGRP 470 (549)
Q Consensus 439 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 470 (549)
+|+|++..+.......+..+.+.+|++.|+|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99999776544333337777888998888764
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=9.1e-09 Score=101.81 Aligned_cols=83 Identities=5% Similarity=0.013 Sum_probs=46.9
Q ss_pred cccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeEeccCCccceeeccCCCcCC
Q 040238 18 SIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFLALSLNRLSVLTKATSNTTS 97 (549)
Q Consensus 18 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 97 (549)
++....+|+.+.+... ++.+...+|.++.+|+.+++..+ ++ .+... +|.++ +|+.+.+..+ +..++...+. .
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~-aF~~c-~l~~i~~~~~-l~~I~~~aF~--~ 112 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDG-AFADT-KLQSYTGMER-VKKFGDYVFQ--G 112 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTT-TTTTC-CCCEEEECTT-CCEECTTTTT--T
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-Eechh-hhcCC-CCceEECCce-eeEeccceec--c
Confidence 3445566777777643 55555667777777777777543 44 33322 35665 5666665533 4555554443 2
Q ss_pred CCCCEEEccCC
Q 040238 98 QKLKYIGLRSC 108 (549)
Q Consensus 98 ~~L~~L~l~~n 108 (549)
.+|+.+.+..+
T Consensus 113 ~~L~~i~lp~~ 123 (379)
T 4h09_A 113 TDLDDFEFPGA 123 (379)
T ss_dssp CCCSEEECCTT
T ss_pred CCcccccCCCc
Confidence 35666666543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=1.4e-07 Score=93.10 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=73.6
Q ss_pred ccCCCCCCCEEEccCcccccccCCCCCccCCCCCceeeCCCCccccccChhhhhccccccccccceEEccCCcCcccCch
Q 040238 297 WLGTLPNLNVLILRSNIFYGIIKEPRTDCGFSKLRIIDLSNNIFIGTLPLKSFLCWNAMKIVNTTGIILSNNSFDSVIPA 376 (549)
Q Consensus 297 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~l~~l~~~~l~~L~l~~n~l~~~~~~ 376 (549)
.+....+|+.+.+..+ +..+.... +.++..|+.+.+..+ ...+...+|..+..+ +.+.+.. .++.....
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~--f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l-----~~i~l~~-~i~~i~~~ 280 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGA--FYGMKALDEIAIPKN--VTSIGSFLLQNCTAL-----KTLNFYA-KVKTVPYL 280 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTT--TTTCSSCCEEEECTT--CCEECTTTTTTCTTC-----CEEEECC-CCSEECTT
T ss_pred ccccccccceeeeccc-eeEEcccc--ccCCccceEEEcCCC--ccEeCccccceeehh-----ccccccc-cceecccc
Confidence 3444445555555333 22222222 244555555555443 123444445555554 4444432 24444455
Q ss_pred hhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccC
Q 040238 377 SIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDN 440 (549)
Q Consensus 377 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 440 (549)
.|.++++|+.+.+.++.++.+...+|.++++|+.++|.++ ++.+-..+|.++.+|+.+.+..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6777777777777777776555667777777777777654 55455567777777777766543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=6.2e-09 Score=101.27 Aligned_cols=60 Identities=18% Similarity=0.335 Sum_probs=37.1
Q ss_pred CCCCCCEEEccCCccccC----CCcccCCCCCCCEeeCCCCcccccCCcCccC-CCCCcEEecccCc
Q 040238 380 NLKGLQVLNLQNNSLQGH----IPSCLGNLPNLESLDLSNNKFSGQIPQQLVE-LTFLEFFNVSDNH 441 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~ 441 (549)
.+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+.. + ...+++++++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 356788888887777643 2233345678888888888776443333332 2 3457777776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=3.8e-09 Score=102.79 Aligned_cols=64 Identities=22% Similarity=0.403 Sum_probs=42.2
Q ss_pred CCCCCCEEEccCCccccCCCccc---CCCCCCCEeeCCCCccccc----CCcCccCCCCCcEEecccCcCc
Q 040238 380 NLKGLQVLNLQNNSLQGHIPSCL---GNLPNLESLDLSNNKFSGQ----IPQQLVELTFLEFFNVSDNHLT 443 (549)
Q Consensus 380 ~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~ 443 (549)
.+++|++|++++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 46778888887777764322222 2467788888888887753 3334455678888888888765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=1.8e-08 Score=88.38 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=29.9
Q ss_pred ccCCCCCCEEEccCC-cCCcc----ccccccCCCCCCEEeCCCCcCcccc--CchhhcCCCCCCCeEeccCCccce
Q 040238 19 IGNLRSLEAIHIAKC-NVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTI--KLDVLLTSWKNLEFLALSLNRLSV 87 (549)
Q Consensus 19 ~~~l~~L~~L~Ls~n-~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~~~l~~L~~L~Ls~n~i~~ 87 (549)
+...++|++|+|++| .+... +.+.+...++|++|+|++|.+...- .....+...+.|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 344455555555555 44321 2233344455555555555553211 111123333445555555554443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=4.5e-08 Score=85.84 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=78.3
Q ss_pred CcEEECCCC-CCCCc----ccccccCCCCCCEEEccCCcCCcc----ccccccCCCCCCEEeCCCCcCcccc--Cchhhc
Q 040238 1 LQFLYLRLN-NFSGD----LLGSIGNLRSLEAIHIAKCNVSGQ----ITSSLRNLSQLFFLDLAKNSYRGTI--KLDVLL 69 (549)
Q Consensus 1 L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~ 69 (549)
|++|+|++| .+... +...+...++|++|+|++|.+.+. +.+.+...+.|++|+|++|.|...- .....+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 689999999 88754 455667789999999999999753 3455667789999999999997432 122236
Q ss_pred CCCCCCCeEec--cCCccceeeccCCCc---CCCCCCEEEccCCCC
Q 040238 70 TSWKNLEFLAL--SLNRLSVLTKATSNT---TSQKLKYIGLRSCNL 110 (549)
Q Consensus 70 ~~l~~L~~L~L--s~n~i~~~~~~~~~~---~~~~L~~L~l~~n~l 110 (549)
...+.|++|++ ++|.|+..+...... ..++|++|++++|.+
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 77788999999 778776654332221 345666666666654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=8.1e-08 Score=88.48 Aligned_cols=67 Identities=31% Similarity=0.422 Sum_probs=36.1
Q ss_pred cCCCCCCEEEccCCcccc--CCCcccCCCCCCCEeeCCCCcccccCCcCccCCC--CCcEEecccCcCcccCC
Q 040238 379 ANLKGLQVLNLQNNSLQG--HIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELT--FLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 379 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~p 447 (549)
..+++|++|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345566666666666654 2334445566666666666666543 1122222 56666666666655444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=4.3e-07 Score=77.45 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=66.2
Q ss_pred cccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCCCc-CccccCchhhcCCC----CCCCeEeccCCc-cceee
Q 040238 16 LGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAKNS-YRGTIKLDVLLTSW----KNLEFLALSLNR-LSVLT 89 (549)
Q Consensus 16 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~l----~~L~~L~Ls~n~-i~~~~ 89 (549)
|.....-.+|++||+++|.+++.--..+.++++|++|+|++|. ++..--.. +..+ ++|++|++++|. |+..+
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4333334579999999999887666778899999999999985 65332222 4553 479999999984 65544
Q ss_pred ccCCCcCCCCCCEEEccCCC
Q 040238 90 KATSNTTSQKLKYIGLRSCN 109 (549)
Q Consensus 90 ~~~~~~~~~~L~~L~l~~n~ 109 (549)
..... .+++|++|++++|.
T Consensus 132 l~~L~-~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALH-HFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGG-GCTTCCEEEEESCT
T ss_pred HHHHh-cCCCCCEEECCCCC
Confidence 44333 68999999999995
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=1.3e-06 Score=80.45 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=67.6
Q ss_pred EECCCCCCC---CcccccccCCCCCCEEEccCCcCCcc--ccccccCCCCCCEEeCCCCcCccccCchhhcCCCCCCCeE
Q 040238 4 LYLRLNNFS---GDLLGSIGNLRSLEAIHIAKCNVSGQ--ITSSLRNLSQLFFLDLAKNSYRGTIKLDVLLTSWKNLEFL 78 (549)
Q Consensus 4 L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~~~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L 78 (549)
++++.|... ..+.....++++|++|+|++|.+.+. +++.+..+++|++|+|++|.+++..... .+..+ +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~-~l~~l-~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGL-KLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-GGTTS-CCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-hcccC-CcceE
Confidence 456666432 11222225689999999999999874 4577789999999999999998653322 34444 99999
Q ss_pred eccCCccceeec-cC-----CCcCCCCCCEEEc
Q 040238 79 ALSLNRLSVLTK-AT-----SNTTSQKLKYIGL 105 (549)
Q Consensus 79 ~Ls~n~i~~~~~-~~-----~~~~~~~L~~L~l 105 (549)
+|++|.+..... .+ ....+++|+.||=
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 999997764111 00 1126788888863
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.1e-06 Score=74.80 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=53.2
Q ss_pred ceEEccCCcCcccCchhhcCCCCCCEEEccCCc-cccCCCcccCCC----CCCCEeeCCCCc-ccccCCcCccCCCCCcE
Q 040238 361 TGIILSNNSFDSVIPASIANLKGLQVLNLQNNS-LQGHIPSCLGNL----PNLESLDLSNNK-FSGQIPQQLVELTFLEF 434 (549)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 434 (549)
+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+..+++|+.
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 555666665555444556778888888888885 554333334443 368888888874 76544445667888888
Q ss_pred EecccCc
Q 040238 435 FNVSDNH 441 (549)
Q Consensus 435 L~l~~N~ 441 (549)
|++++|+
T Consensus 144 L~L~~c~ 150 (176)
T 3e4g_A 144 LFLSDLP 150 (176)
T ss_dssp EEEESCT
T ss_pred EECCCCC
Confidence 8888874
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.59 E-value=0.00011 Score=59.61 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=44.4
Q ss_pred EEEccCCccc-cCCCcccCCCCCCCEeeCCCCcccccCCcCccCCCCCcEEecccCcCcccCC
Q 040238 386 VLNLQNNSLQ-GHIPSCLGNLPNLESLDLSNNKFSGQIPQQLVELTFLEFFNVSDNHLTGLIP 447 (549)
Q Consensus 386 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 447 (549)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|+|.|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5667777765 24444332 468888888888887667778888889999999999988765
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=6.4e-05 Score=65.28 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=27.3
Q ss_pred cCCCCCCCeEeccCCccceeeccCCCc---CCCCCCEEEccCCCCC-----CCChhhcCCCCccEEEeecC
Q 040238 69 LTSWKNLEFLALSLNRLSVLTKATSNT---TSQKLKYIGLRSCNLT-----KFPNFLQNQYHLLVLDLSDN 131 (549)
Q Consensus 69 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~---~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n 131 (549)
+..-..|+.|+|++|.|...+...... ....|++|+|+.|.++ .+-+.+..-+.|++|+|+++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 334444555555555444333332221 2334555555555442 12233444445666666543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=7e-05 Score=65.06 Aligned_cols=117 Identities=16% Similarity=0.098 Sum_probs=83.7
Q ss_pred ccccCCCCCCEEEccCC-cCCcc----ccccccCCCCCCEEeCCCCcCcc--ccCchhhcCCCCCCCeEeccCCccceee
Q 040238 17 GSIGNLRSLEAIHIAKC-NVSGQ----ITSSLRNLSQLFFLDLAKNSYRG--TIKLDVLLTSWKNLEFLALSLNRLSVLT 89 (549)
Q Consensus 17 ~~~~~l~~L~~L~Ls~n-~~~~~----~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 89 (549)
..+.+-+.|++|+|++| .+... +.+++..-..|+.|+|++|.|.. .......+..-+.|++|+|+.|.|+..+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34456688999999985 77532 45667778899999999999863 3333345667789999999999888766
Q ss_pred ccCCCc---CCCCCCEEEccCC---CCC-----CCChhhcCCCCccEEEeecCcC
Q 040238 90 KATSNT---TSQKLKYIGLRSC---NLT-----KFPNFLQNQYHLLVLDLSDNRI 133 (549)
Q Consensus 90 ~~~~~~---~~~~L~~L~l~~n---~l~-----~l~~~l~~l~~L~~L~l~~n~l 133 (549)
...... ....|++|++++| .++ .+...+..-+.|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 544322 4456999999865 332 2334566678899999987654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0015 Score=52.85 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=44.7
Q ss_pred ceEEccCCcCc-ccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCCCccc
Q 040238 361 TGIILSNNSFD-SVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSNNKFS 419 (549)
Q Consensus 361 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 419 (549)
..++.++++++ ..+|..+ .++|++|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46677777776 2444432 247999999999999777788999999999999999885
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=76.16 E-value=1.5 Score=26.99 Aligned_cols=9 Identities=56% Similarity=0.885 Sum_probs=3.4
Q ss_pred eeehhhhhh
Q 040238 504 ILIGYAGGL 512 (549)
Q Consensus 504 ~~~~~~~~~ 512 (549)
|+.++++++
T Consensus 12 IA~gVVgGv 20 (44)
T 2l2t_A 12 IAAGVIGGL 20 (44)
T ss_dssp HHHHHHHHH
T ss_pred EEEeehHHH
Confidence 333333333
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.87 E-value=8.4 Score=28.80 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=27.7
Q ss_pred cCcccCchhhcCCCCCCEEEccCCccccCCCcccCCCCCCCEeeCCC
Q 040238 369 SFDSVIPASIANLKGLQVLNLQNNSLQGHIPSCLGNLPNLESLDLSN 415 (549)
Q Consensus 369 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 415 (549)
.++.+-..+|.++++|+.+.|..+ ++.+-..+|.++.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445556666777777766654 3324455666666776666654
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.99 E-value=5.3 Score=29.91 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=30.0
Q ss_pred CCCCCcccccccCCCCCCEEEccCCcCCccccccccCCCCCCEEeCCC
Q 040238 9 NNFSGDLLGSIGNLRSLEAIHIAKCNVSGQITSSLRNLSQLFFLDLAK 56 (549)
Q Consensus 9 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~Ls~ 56 (549)
..++.+-..+|.+|.+|+.+.+..+ +..+...+|.+|.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455555666777777777777654 4445556677777777776654
No 168
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=69.26 E-value=2.2 Score=26.31 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=10.2
Q ss_pred eeeehhhhhhhhhhHHHHHHhhhH
Q 040238 503 IILIGYAGGLVAGLVVGFNFSTGI 526 (549)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~ 526 (549)
.|+.++++++++.+++++.++++.
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHHHHHHHHHHHh
Confidence 344455554444444433333333
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=57.59 E-value=8.3 Score=22.88 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.0
Q ss_pred hhhhhhhH
Q 040238 510 GGLVAGLV 517 (549)
Q Consensus 510 ~~~~~~~~ 517 (549)
.+++++++
T Consensus 14 AGiVvG~v 21 (38)
T 2k1k_A 14 VAVIFGLL 21 (38)
T ss_dssp HHHHHHHH
T ss_pred eeeehHHH
Confidence 33333333
No 170
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=49.43 E-value=4.8 Score=25.93 Aligned_cols=6 Identities=17% Similarity=0.711 Sum_probs=2.4
Q ss_pred HHHHhh
Q 040238 529 WILEKL 534 (549)
Q Consensus 529 ~~~~~~ 534 (549)
|.+..+
T Consensus 31 wK~GFF 36 (54)
T 2l8s_A 31 WKIGFF 36 (54)
T ss_dssp HHHHHT
T ss_pred HHcCcc
Confidence 433333
No 171
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=47.20 E-value=20 Score=25.29 Aligned_cols=16 Identities=0% Similarity=-0.284 Sum_probs=7.7
Q ss_pred hhhhhhhhhhHHHHHH
Q 040238 507 GYAGGLVAGLVVGFNF 522 (549)
Q Consensus 507 ~~~~~~~~~~~~~~~~ 522 (549)
+++.+++++++++.++
T Consensus 12 ~Iv~gvi~gilliGll 27 (79)
T 2knc_B 12 VVLLSVMGAILLIGLA 27 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4455555554443333
No 172
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=42.15 E-value=33 Score=18.21 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=8.3
Q ss_pred HHhhhHHHHHHHhhh
Q 040238 521 NFSTGIIGWILEKLG 535 (549)
Q Consensus 521 ~~~~~~~~~~~~~~~ 535 (549)
+.+.....|.++|..
T Consensus 16 ltflafgfwlfkylq 30 (32)
T 2lx0_A 16 LTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344567777654
No 173
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.27 E-value=7.4 Score=25.12 Aligned_cols=6 Identities=17% Similarity=0.656 Sum_probs=2.5
Q ss_pred HHHHhh
Q 040238 529 WILEKL 534 (549)
Q Consensus 529 ~~~~~~ 534 (549)
|.+..+
T Consensus 34 wK~GFF 39 (54)
T 2knc_A 34 WKVGFF 39 (54)
T ss_dssp HHHHHT
T ss_pred HHcCcc
Confidence 444444
No 174
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=32.69 E-value=24 Score=23.56 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=7.2
Q ss_pred hhhhhHHHHHHhhhH
Q 040238 512 LVAGLVVGFNFSTGI 526 (549)
Q Consensus 512 ~~~~~~~~~~~~~~~ 526 (549)
+++|.+++++++...
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 345555555554433
No 175
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=30.44 E-value=71 Score=18.59 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=4.8
Q ss_pred hhhHHHHhhhh
Q 040238 536 TQQKATRRRRR 546 (549)
Q Consensus 536 ~~~~~~~r~~~ 546 (549)
+.|++|++.++
T Consensus 22 RPQ~Kr~K~~~ 32 (37)
T 2rdd_B 22 RPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHT
T ss_pred hhHHHHHHHHH
Confidence 44444444433
No 176
>3izc_q 60S ribosomal protein RPL41 (L41E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_q 3u5e_n 3u5i_n 4b6a_n
Probab=27.11 E-value=49 Score=17.05 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=7.4
Q ss_pred HHHHhhhhhhHHHHhhh
Q 040238 529 WILEKLGTQQKATRRRR 545 (549)
Q Consensus 529 ~~~~~~~~~~~~~~r~~ 545 (549)
|.....++..+.+|+-|
T Consensus 5 WrKKR~rRlkrkRrkmr 21 (25)
T 3izc_q 5 WRKKRTRRLKRKRRKVR 21 (26)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55544444444333333
No 177
>3iz5_q 60S ribosomal protein L41 (L41E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_q
Probab=26.93 E-value=48 Score=17.10 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=7.4
Q ss_pred HHHHhhhhhhHHHHhhh
Q 040238 529 WILEKLGTQQKATRRRR 545 (549)
Q Consensus 529 ~~~~~~~~~~~~~~r~~ 545 (549)
|.....++..+.+|+-|
T Consensus 5 W~KKR~rRlkrkRrkmR 21 (25)
T 3iz5_q 5 WKKKRMRRLKRKRRKMR 21 (26)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55544444444333333
No 178
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=25.76 E-value=16 Score=22.22 Aligned_cols=8 Identities=63% Similarity=1.190 Sum_probs=3.0
Q ss_pred eehhhhhh
Q 040238 505 LIGYAGGL 512 (549)
Q Consensus 505 ~~~~~~~~ 512 (549)
++++.+|+
T Consensus 14 i~s~l~GL 21 (42)
T 2k1a_A 14 LVGVLGGL 21 (42)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
Done!