Your job contains 1 sequence.
>040243
MESTVESNPQYQTLDFNQNPPLPQDTLDHDSQNPPKTLAPPDAQNPQPASENGHDKNNEN
SCNNNNDVAAADYIKQKPLLSENGLTNTHSGTDKDQSGGEEETTSRRRRRSRWDPPPSES
GGTEGNGDSGSGTRKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNSRLLEISR
MLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAF
KPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE
GRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL
AALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKGTTGK
KMDDEYQNFLAELGGTLPESASKQSTTLALGPGSGSSGSNPPWANNSGSSGTPGHPGLGS
NGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKY
ADIQMANNAIASMNGYRLEGRTIAVRVAGKPPQPTVPPGPPTSTMPTYPVSAPPVGGYPS
QQYAPGGPLPNPPAASYTGAPVPWGPPVPPPYAPYAPPPPGSTMYPPVPGQPMPPYGVQY
PPPVQTAPPGALTAPPGAPTQTATSSEAQQHSFPPGVQSESSSSAPAASANMYGSSMPPM
PPNVQPAYATAPLGYSPYYNAVPPPPPPAPVSAADHSQNLGNVPWATNPPVQPPVSSAEK
SNYGADAEYEKFMAEMK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040243
(797 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2176222 - symbol:AT5G51300 species:3702 "Arabi... 2032 7.8e-225 3
ASPGD|ASPL0000074583 - symbol:AN10615 species:162425 "Eme... 644 9.8e-66 2
FB|FBgn0025571 - symbol:SF1 "Splicing factor 1" species:7... 617 5.4e-63 2
UNIPROTKB|A2VDM7 - symbol:SF1 "Uncharacterized protein" s... 562 2.6e-61 3
UNIPROTKB|Q15637 - symbol:SF1 "Splicing factor 1" species... 562 2.6e-61 3
UNIPROTKB|F1RQR0 - symbol:SF1 "Uncharacterized protein" s... 562 2.6e-61 3
UNIPROTKB|E2RRT4 - symbol:SF1 "Uncharacterized protein" s... 562 2.6e-61 3
ZFIN|ZDB-GENE-030131-2492 - symbol:sf1 "splicing factor 1... 554 9.6e-60 3
POMBASE|SPCC962.06c - symbol:bpb1 "zinc finger splicing f... 592 1.3e-59 2
MGI|MGI:1095403 - symbol:Sf1 "splicing factor 1" species:... 561 1.4e-58 2
UNIPROTKB|F1LSC3 - symbol:Sf1 "Protein Sf1" species:10116... 561 1.4e-58 2
DICTYBASE|DDB_G0293554 - symbol:sf1 "CCHC-type zinc finge... 584 9.6e-57 1
UNIPROTKB|F1LM37 - symbol:Sf1 "Protein Sf1" species:10116... 561 2.3e-56 2
WB|WBGene00013808 - symbol:sfa-1 species:6239 "Caenorhabd... 559 2.9e-56 2
GENEDB_PFALCIPARUM|PFF1135w - symbol:PFF1135w "transcript... 484 1.1e-48 2
UNIPROTKB|C6KT72 - symbol:PFF1135w "Transcription or spli... 484 1.1e-48 2
SGD|S000004106 - symbol:MSL5 "Component of the commitment... 485 1.8e-48 2
CGD|CAL0004717 - symbol:orf19.329 species:5476 "Candida a... 415 1.5e-41 2
UNIPROTKB|B4DX42 - symbol:SF1 "Splicing factor 1" species... 401 5.1e-39 2
RGD|620645 - symbol:Sf1 "splicing factor 1" species:10116... 363 8.5e-33 1
UNIPROTKB|Q5W9D7 - symbol:QKI "Protein quaking" species:9... 293 4.1e-25 1
UNIPROTKB|Q9GMY1 - symbol:QKI "Protein quaking" species:9... 293 4.1e-25 1
UNIPROTKB|Q96PU8 - symbol:QKI "Protein quaking" species:9... 293 4.1e-25 1
UNIPROTKB|Q5W9D5 - symbol:QKI "Protein quaking" species:9... 293 4.1e-25 1
MGI|MGI:97837 - symbol:Qk "quaking" species:10090 "Mus mu... 293 4.1e-25 1
RGD|1584886 - symbol:Qk "quaking" species:10116 "Rattus n... 293 4.1e-25 1
UNIPROTKB|D4A2X0 - symbol:Qk "Protein Qk" species:10116 "... 293 4.1e-25 1
UNIPROTKB|F1LMH5 - symbol:Qk "Protein Qk" species:10116 "... 293 4.1e-25 1
TAIR|locus:2024326 - symbol:AT1G09660 "AT1G09660" species... 293 4.1e-25 1
UNIPROTKB|F1NWU9 - symbol:QKI "Protein quaking" species:9... 292 5.3e-25 1
UNIPROTKB|F1NWV0 - symbol:QKI "Protein quaking" species:9... 292 5.3e-25 1
UNIPROTKB|Q9YH18 - symbol:QKI "Protein quaking" species:9... 292 5.3e-25 1
ZFIN|ZDB-GENE-040426-1462 - symbol:qki2 "QKI, KH domain c... 292 5.3e-25 1
UNIPROTKB|F1N7N1 - symbol:QKI "Protein quaking" species:9... 291 6.8e-25 1
UNIPROTKB|F1PLY2 - symbol:QKI "Protein quaking" species:9... 291 6.8e-25 1
UNIPROTKB|F1PX61 - symbol:QKI "Protein quaking" species:9... 291 6.8e-25 1
UNIPROTKB|J9NVZ6 - symbol:QKI "Protein quaking" species:9... 291 6.8e-25 1
UNIPROTKB|F5GXS8 - symbol:QKI "Protein quaking" species:9... 291 6.8e-25 1
UNIPROTKB|F5GYM3 - symbol:QKI "Protein quaking" species:9... 291 6.8e-25 1
UNIPROTKB|F1SBW4 - symbol:QKI "Protein quaking" species:9... 291 6.8e-25 1
ZFIN|ZDB-GENE-081028-54 - symbol:qkib "QKI, KH domain con... 290 8.7e-25 1
TAIR|locus:2064097 - symbol:AT2G38610 "AT2G38610" species... 281 8.3e-24 1
UNIPROTKB|Q75GR5 - symbol:SPIN1 "KH domain-containing pro... 276 2.9e-23 1
FB|FBgn0264491 - symbol:how "held out wings" species:7227... 286 4.0e-23 1
TAIR|locus:2077818 - symbol:AT3G08620 "AT3G08620" species... 274 4.8e-23 1
ZFIN|ZDB-GENE-990415-230 - symbol:qkia "QKI, KH domain co... 289 1.1e-22 1
UNIPROTKB|G5EFF1 - symbol:asd-2 "Protein ASD-2, isoform c... 274 3.5e-21 1
TAIR|locus:2161845 - symbol:AT5G56140 "AT5G56140" species... 256 4.2e-21 1
WB|WBGene00006423 - symbol:asd-2 species:6239 "Caenorhabd... 274 5.4e-21 1
WB|WBGene00001595 - symbol:gld-1 species:6239 "Caenorhabd... 267 2.8e-20 1
UNIPROTKB|F1P522 - symbol:QKI "Protein quaking" species:9... 239 2.9e-19 1
UNIPROTKB|F5H8C8 - symbol:QKI "Protein quaking" species:9... 223 1.6e-17 1
UNIPROTKB|F1RZV6 - symbol:KHDRBS2 "Uncharacterized protei... 217 6.9e-17 1
ZFIN|ZDB-GENE-061013-497 - symbol:khdrbs2 "KH domain cont... 221 2.9e-16 2
UNIPROTKB|E5RJZ9 - symbol:KHDRBS3 "KH domain-containing, ... 206 1.1e-15 1
UNIPROTKB|I3LAN7 - symbol:LOC100625959 "Uncharacterized p... 205 1.4e-15 1
UNIPROTKB|E1BVW8 - symbol:KHDRBS2 "Uncharacterized protei... 217 3.7e-15 1
UNIPROTKB|E1BP48 - symbol:KHDRBS2 "Uncharacterized protei... 217 3.7e-15 1
UNIPROTKB|E2QWN2 - symbol:KHDRBS2 "Uncharacterized protei... 217 3.7e-15 1
UNIPROTKB|Q5VWX1 - symbol:KHDRBS2 "KH domain-containing, ... 217 3.7e-15 1
MGI|MGI:2159649 - symbol:Khdrbs2 "KH domain containing, R... 217 3.7e-15 1
RGD|621738 - symbol:Khdrbs2 "KH domain containing, RNA bi... 217 3.7e-15 1
UNIPROTKB|E5RG12 - symbol:KHDRBS3 "KH domain-containing, ... 198 7.8e-15 1
UNIPROTKB|F1NKE9 - symbol:KHDRBS3 "Uncharacterized protei... 212 9.4e-15 1
UNIPROTKB|E1C4N4 - symbol:KHDRBS1 "KH domain-containing, ... 213 1.2e-14 1
WB|WBGene00019509 - symbol:K07H8.9 species:6239 "Caenorha... 195 1.6e-14 1
UNIPROTKB|F1RRV9 - symbol:KHDRBS3 "Uncharacterized protei... 206 2.1e-14 1
UNIPROTKB|J9NRH2 - symbol:KHDRBS1 "Uncharacterized protei... 213 2.5e-14 1
UNIPROTKB|F1NLF2 - symbol:KHDRBS1 "KH domain-containing, ... 213 2.7e-14 1
UNIPROTKB|Q8UUW7 - symbol:KHDRBS1 "KH domain-containing, ... 213 2.7e-14 1
UNIPROTKB|Q29RQ2 - symbol:KHDRBS1 "Uncharacterized protei... 213 2.9e-14 1
UNIPROTKB|Q07666 - symbol:KHDRBS1 "KH domain-containing, ... 213 2.9e-14 1
UNIPROTKB|I3LP11 - symbol:LOC100739434 "Uncharacterized p... 213 2.9e-14 1
MGI|MGI:893579 - symbol:Khdrbs1 "KH domain containing, RN... 213 2.9e-14 1
RGD|621459 - symbol:Khdrbs1 "KH domain containing, RNA bi... 213 2.9e-14 1
UNIPROTKB|F1PLD5 - symbol:KHDRBS1 "Uncharacterized protei... 213 2.9e-14 1
UNIPROTKB|A4FV24 - symbol:KHDRBS3 "Uncharacterized protei... 206 7.0e-14 1
UNIPROTKB|E2RLG8 - symbol:KHDRBS3 "Uncharacterized protei... 206 7.0e-14 1
UNIPROTKB|O75525 - symbol:KHDRBS3 "KH domain-containing, ... 206 7.0e-14 1
TAIR|locus:2096648 - symbol:AT3G32940 species:3702 "Arabi... 215 1.1e-13 2
MGI|MGI:1313312 - symbol:Khdrbs3 "KH domain containing, R... 201 2.7e-13 1
ZFIN|ZDB-GENE-040426-2344 - symbol:khdrbs1b "KH domain co... 200 3.8e-13 1
RGD|620921 - symbol:Khdrbs3 "KH domain containing, RNA bi... 197 7.7e-13 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 196 1.3e-12 1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 196 1.3e-12 1
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 196 1.3e-12 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 196 1.3e-12 1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 196 1.3e-12 1
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 196 1.3e-12 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 177 1.4e-12 1
TAIR|locus:2171539 - symbol:RPS19 "ribosomal protein S19"... 173 3.8e-12 1
UNIPROTKB|F6W1U9 - symbol:RBMS2 "RNA-binding motif, singl... 141 8.6e-12 2
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 186 1.1e-11 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 189 1.4e-11 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 167 1.7e-11 1
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin... 165 2.8e-11 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 183 2.9e-11 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 164 3.5e-11 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 181 4.2e-11 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 180 5.5e-11 1
WARNING: Descriptions of 680 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2176222 [details] [associations]
symbol:AT5G51300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
SMART:SM00360 EMBL:CP002688 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 EMBL:AB023044 OMA:GDGPSHE
EMBL:AY142629 EMBL:AK316802 EMBL:AK317057 IPI:IPI00537668
RefSeq:NP_001032055.1 RefSeq:NP_199943.1 RefSeq:NP_851169.1
UniGene:At.22924 ProteinModelPortal:Q9LU44 SMR:Q9LU44 IntAct:Q9LU44
STRING:Q9LU44 PRIDE:Q9LU44 EnsemblPlants:AT5G51300.1
EnsemblPlants:AT5G51300.2 EnsemblPlants:AT5G51300.3 GeneID:835204
KEGG:ath:AT5G51300 TAIR:At5g51300 InParanoid:Q9LU44
PhylomeDB:Q9LU44 ProtClustDB:CLSN2687224 Genevestigator:Q9LU44
Uniprot:Q9LU44
Length = 804
Score = 2032 (720.4 bits), Expect = 7.8e-225, Sum P(3) = 7.8e-225
Identities = 413/609 (67%), Positives = 449/609 (73%)
Query: 1 MESTVESNPQYQTLDFNQNPPLPQDTLDHDSQNPPKTLAPPDAQNPQPASENGHDKXXXX 60
MES +NP QTLD Q PP + P L + QN + + NG
Sbjct: 1 MESVEMNNPNSQTLD--QPPP------SSNGDTAPLALDHMNPQNSESVALNGSSTPIPD 52
Query: 61 XXXXXXDVAAADYIKQKPLLSENGLTNTHSGTDKDQXXXXXXXXXXXXXXXXWDPPPXXX 120
A + ++ PLLSENG++ T SG DKDQ WDPPP
Sbjct: 53 TNGSS---AKPELLR--PLLSENGVSKTLSGNDKDQSGGEEETTSRRKRRSRWDPPPSES 107
Query: 121 X---XXXXXXXXXXXXRKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNSRLLE 177
RKR+SRWADDEP+ IQLPDFMKDFTGGIEFDPEIQALNSRLLE
Sbjct: 108 INNPSAEGGTDSGTGTRKRKSRWADDEPRTQIQLPDFMKDFTGGIEFDPEIQALNSRLLE 167
Query: 178 ISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRN 237
ISRMLQSG+PLDDRPEGQRSPSPEP+YDNMGIRINTREYRARERLN+ERQEII+QIIK+N
Sbjct: 168 ISRMLQSGMPLDDRPEGQRSPSPEPVYDNMGIRINTREYRARERLNRERQEIIAQIIKKN 227
Query: 238 PAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGS 297
PAFKPPADYRPPKL KKL+IPMKE+PGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGS
Sbjct: 228 PAFKPPADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGS 287
Query: 298 VKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVDEVLNEHKRQQL 357
VKEGR QQK+DLK DPSENEDLHVLVEAETQE+LE AA MVEKLLQPVDEVLNEHKRQQL
Sbjct: 288 VKEGRHQQKKDLKYDPSENEDLHVLVEAETQEALEAAAGMVEKLLQPVDEVLNEHKRQQL 347
Query: 358 RELAALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKGT 417
RELA LNGTIRDEE+CRLCGEPGHRQYACPSRT+TFKSDVLCKICGDGGHPTIDC VKGT
Sbjct: 348 RELATLNGTIRDEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCPVKGT 407
Query: 418 TGKKMDDEYQNFLAELGGTLPESASKQSTTLALXXXXXXXXXXXXXXXXXXXXXTPGHPG 477
TGKKMDDEYQNFLAELGGT+PES+ KQS TLAL HPG
Sbjct: 408 TGKKMDDEYQNFLAELGGTVPESSLKQSATLALGPGSSGSNPPWANNAGNGASA---HPG 464
Query: 478 LGSNGAKP-IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYG 536
LGS KP KE D+TNLYIG+LPP L+DDGLI LFS+FG+IVMAKVIKDRVTG+SKGYG
Sbjct: 465 LGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524
Query: 537 FVKYADIQMANNAIASMNGYRLEGRTIAVRVAGKXXXXXXXXXXXXXXXXXXXV--SAPP 594
FVKYAD+QMAN A+ +MNGYR EGRT+AVR+AGK S P
Sbjct: 525 FVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPPGPPAPQPPTQGYPPSNQP 584
Query: 595 VGGYPSQQY 603
G YPSQQY
Sbjct: 585 PGAYPSQQY 593
Score = 151 (58.2 bits), Expect = 9.2e-224, Sum P(2) = 9.2e-224
Identities = 37/90 (41%), Positives = 42/90 (46%)
Query: 685 SSEAQQHSFPPGVQXXXXXXXXXXXXNMYGSSMPPMPPNVQPAYATAPLGXXXXXXXXXX 744
SSE QQ SFPPGVQ N+YGSS+ MP QP Y + P
Sbjct: 661 SSEPQQ-SFPPGVQADSGAATSSIPPNVYGSSVTAMPG--QPPYMSYP----SYYNAVPP 713
Query: 745 XXXXXXXXXXDHSQNLGNVPWATNPPVQPP 774
DHSQN+GN+PWA NP V P
Sbjct: 714 PTPPAPASSTDHSQNMGNMPWANNPSVSTP 743
Score = 134 (52.2 bits), Expect = 7.8e-225, Sum P(3) = 7.8e-225
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 756 HSQNLGNVPWATNPPVQPPVSSAEKSNYGADAEYEKFMAEMK 797
+SQ++GNVPWA PPVQPP AE + ++EYEKFMAEMK
Sbjct: 766 YSQSMGNVPWAPKPPVQPP---AENPSSVGESEYEKFMAEMK 804
Score = 45 (20.9 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 7 SNPQYQTLDFNQNPPLPQDTLDHDSQNPPKTLAPPDAQNP 46
S P Y PP P + DH SQN P A NP
Sbjct: 703 SYPSYYNAVPPPTPPAPASSTDH-SQNMGNM---PWANNP 738
Score = 44 (20.5 bits), Expect = 7.8e-225, Sum P(3) = 7.8e-225
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 713 YGSSMPPMPPNVQPA 727
YG PP PP+V A
Sbjct: 636 YGMQYPPPPPHVTQA 650
Score = 40 (19.1 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 18 QNPPLPQDTLDHDSQNPPK-TLAPPDAQNPQPASENG 53
Q PP P H +Q PP T P + PQ + G
Sbjct: 639 QYPPPPP----HVTQAPPPGTTQNPSSSEPQQSFPPG 671
Score = 37 (18.1 bits), Expect = 4.3e-224, Sum P(3) = 4.3e-224
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 718 PPMPPNV 724
PPMPP V
Sbjct: 758 PPMPPTV 764
>ASPGD|ASPL0000074583 [details] [associations]
symbol:AN10615 species:162425 "Emericella nidulans"
[GO:0000349 "generation of catalytic spliceosome for first
transesterification step" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 EMBL:BN001303 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000197271 EnsemblFungi:CADANIAT00005496
OMA:PPLMPWM Uniprot:C8V9G4
Length = 554
Score = 644 (231.8 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 139/290 (47%), Positives = 192/290 (66%)
Query: 134 RKRRSRWAD-DEPKP--VIQLPDF-MKDFTGGIEFDPEIQALNSRLLEISRMLQSGLPLD 189
RK+R+RW D E K ++ LP M +FT E E L+ R+ EIS+ L+ D
Sbjct: 59 RKKRNRWGDAQENKAAGLMGLPTMIMANFT--TE-QLEAYTLHLRIEEISQKLRIN---D 112
Query: 190 DRP-EGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYR- 247
P +G RSPSP P YDN G R+NTREYR R+RL ER +++ + IK P + PP+DYR
Sbjct: 113 VVPADGDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAIKTIPNYHPPSDYRR 172
Query: 248 PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKR 307
P K Q+K+Y+P+ +YP NFIGL+IGPRGNT K+ME E+GAKI IRGKGSVKEG+ +
Sbjct: 173 PTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEGK--GRS 230
Query: 308 DLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQP---VDEVLNEHKRQQLRELAALN 364
D ++ EDLH L+ A+T+E + A +V +++ + E NE KR QLRELAALN
Sbjct: 231 DAAHASNQEEDLHCLIMADTEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALN 290
Query: 365 GTIRDEEY--CRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDC 412
GT+RD+E C+ CG+ GHR+Y CP + + F ++++C++CG+ GH DC
Sbjct: 291 GTLRDDENQACQNCGQIGHRKYDCPEQRN-FTANIICRVCGNAGHMARDC 339
Score = 43 (20.2 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 694 PPGVQXXXXXXXXXXXXNMYGSSMPPMPPNVQP 726
PPG+ G PP PP+ QP
Sbjct: 515 PPGMSSMYYGASGSPPPPPPGEGPPPPPPSDQP 547
>FB|FBgn0025571 [details] [associations]
symbol:SF1 "Splicing factor 1" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001878
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 EMBL:AE014297
GO:GO:0022008 GO:GO:0008270 GO:GO:0003723 GO:GO:0002121
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0007476 GO:GO:0071011
GO:GO:0000398 HSSP:Q9BW01 KO:K13095 GeneTree:ENSGT00550000074434
CTD:7536 ChiTaRS:SF1 OMA:PPLMPWM FlyBase:FBgn0025571 EMBL:BT031265
RefSeq:NP_524654.2 UniGene:Dm.3761 SMR:Q9VEJ1 MINT:MINT-896516
STRING:Q9VEJ1 EnsemblMetazoa:FBtr0083456 GeneID:43912
KEGG:dme:Dmel_CG5836 UCSC:CG5836-RA InParanoid:Q9VEJ1
GenomeRNAi:43912 NextBio:836343 Uniprot:Q9VEJ1
Length = 787
Score = 617 (222.3 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 141/333 (42%), Positives = 204/333 (61%)
Query: 134 RKRRSRWADDE-PKPVIQ-LPDFMKDFTGGIEFDPEIQALNSRLLEISRMLQSG-LPLDD 190
RKR+SRW E K I +P + + E + ++ EISR L++G L +
Sbjct: 272 RKRKSRWGGSENDKTFIPGMPTILPSTLDPAQ--QEAYLVQFQIEEISRKLRTGDLGITQ 329
Query: 191 RPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP- 249
PE +RSPSPEPIY + G R+NTRE+R R+RL ++R ++I ++ NP FKPPADY+PP
Sbjct: 330 NPE-ERSPSPEPIYSSDGKRLNTREFRYRKRLEEQRHQLIVKMQTVNPEFKPPADYKPPV 388
Query: 250 -KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRD 308
++ K+ IP +++P NF+GL+IGPRGNT K ME++TGAKI+IRGKGSVKEG++ +K D
Sbjct: 389 TRVSDKVLIPQEQHPDINFVGLLIGPRGNTLKAMEKDTGAKIIIRGKGSVKEGKVGRK-D 447
Query: 309 LKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQP---VDEVLNEHKRQQLRELAALNG 365
+P P E+E LH + A E++ A ++ +++ V E N+ +R QLRELA LNG
Sbjct: 448 GQPLPGEDEPLHAFITAPNPEAVRKAVDKIKDVIRQGIEVPEGHNDLRRMQLRELAQLNG 507
Query: 366 TIRDEEYCRL-CGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK----GTTGK 420
T+R+ + R CG H+ + CP + + ++C CG GH T DC K G G
Sbjct: 508 TLRENDIQRCTCGSTDHKSWQCPDKP-IITNTIVCTSCGGTGHLTKDCRNKRPGSGVPGM 566
Query: 421 -------KMDDEYQNFLAELG-GTLPESASKQS 445
K+D+EY + +AELG G P SAS ++
Sbjct: 567 ACEDSQAKIDEEYMSLMAELGEGPPPPSASAKT 599
Score = 44 (20.5 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 714 GSSMPPMPPNVQPAYA 729
G+S PPMPP AY+
Sbjct: 738 GTSAPPMPPWGGGAYS 753
Score = 43 (20.2 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 718 PPMPPNVQPAYATAP 732
PPMPP + P + +AP
Sbjct: 698 PPMPPPLMP-WMSAP 711
Score = 38 (18.4 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 763 VPWATNPPVQPPVSSAEKSN 782
+PW + P QPP + E N
Sbjct: 705 MPWMSAP--QPPPPATEPLN 722
>UNIPROTKB|A2VDM7 [details] [associations]
symbol:SF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050810 "regulation of steroid biosynthetic process"
evidence=IEA] [GO:0033327 "Leydig cell differentiation"
evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
[GO:0022402 "cell cycle process" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 GO:GO:0033327 GO:GO:0050810
GO:GO:0046872 GO:GO:0008270 GO:GO:0005681 GO:GO:0003723
eggNOG:COG5176 KO:K13095 GeneTree:ENSGT00550000074434 GO:GO:0022402
GO:GO:0030238 CTD:7536 HOVERGEN:HBG063318 OMA:GDGPSHE
EMBL:DAAA02063538 EMBL:BC133313 IPI:IPI00729661 IPI:IPI00999378
RefSeq:NP_001075083.1 UniGene:Bt.7991 SMR:A2VDM7 STRING:A2VDM7
Ensembl:ENSBTAT00000001376 GeneID:541229 KEGG:bta:541229
NextBio:20879080 Uniprot:A2VDM7
Length = 639
Score = 562 (202.9 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 132/328 (40%), Positives = 198/328 (60%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--EVLNEHKRQQLRELAALNGT 366
+ P E+E LH LV A T E+++ A + +L Q ++ E N+ ++ QLRELA LNGT
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGT 253
Query: 367 IRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK------GTTGK 420
+R+++ R+ R + S T + + +C CG GH DC + K
Sbjct: 254 LREDDN-RIL-----RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDK 306
Query: 421 -KMDDEYQNFLAELGGTLPESASKQSTT 447
+MD EY + +AELG P AS ST+
Sbjct: 307 ARMDKEYLSLMAELGEA-PVPASVGSTS 333
Score = 58 (25.5 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 685 SSEAQQHSFPPGVQXXXXXXXXXXXXNMYGS-SMPPMPPNVQP 726
++ A S PP Q M G+ +M P+PP VQP
Sbjct: 533 TTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQP 575
Score = 37 (18.1 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 764 PWATNPPVQPPVSSA 778
P A PP PP SA
Sbjct: 579 PGAPPPPPPPPPGSA 593
Score = 37 (18.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 764 PWATN---PPVQPPVSSAEKSN 782
PW PP PP SS+ S+
Sbjct: 499 PWQQQQQQPPPPPPPSSSMASS 520
Score = 37 (18.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 690 QHSFPPGVQXXXXXXXXXXXXNMYGSSMPPMPPNVQPAYATAPLG 734
Q PPG MY PP PP + P+ +G
Sbjct: 574 QPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPP-MDPSNFVTMMG 617
>UNIPROTKB|Q15637 [details] [associations]
symbol:SF1 "Splicing factor 1" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0022402 "cell cycle process" evidence=IEA] [GO:0030238 "male
sex determination" evidence=IEA] [GO:0033327 "Leydig cell
differentiation" evidence=IEA] [GO:0050810 "regulation of steroid
biosynthetic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0005840 "ribosome" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0003714 "transcription corepressor activity"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000389 "mRNA 3'-splice site recognition" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001878
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098
PROSITE:PS50084 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
GO:GO:0005634 GO:GO:0003714 GO:GO:0006355 GO:GO:0033327
GO:GO:0050810 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0005840 GO:GO:0048662
eggNOG:COG5176 KO:K13095 GO:GO:0022402 GO:GO:0030238 GO:GO:0000389
EMBL:AP001462 EMBL:Y08765 EMBL:Y08766 EMBL:L49345 EMBL:L49380
EMBL:D26120 EMBL:AK293753 EMBL:BC000773 EMBL:BC008080 EMBL:BC008724
EMBL:BC011657 EMBL:BC020217 EMBL:BC038446 EMBL:AJ000051
EMBL:AJ000052 IPI:IPI00294627 IPI:IPI00386114 IPI:IPI00386117
IPI:IPI00386119 IPI:IPI00386120 IPI:IPI00852591 IPI:IPI00941553
PIR:G02919 RefSeq:NP_001171501.1 RefSeq:NP_001171502.1
RefSeq:NP_004621.2 RefSeq:NP_973724.1 RefSeq:NP_973726.2
RefSeq:NP_973727.1 UniGene:Hs.502829 PDB:1K1G PDB:4FXW PDB:4FXX
PDBsum:1K1G PDBsum:4FXW PDBsum:4FXX ProteinModelPortal:Q15637
SMR:Q15637 DIP:DIP-29410N IntAct:Q15637 MINT:MINT-1582417
STRING:Q15637 DMDM:38258418 PaxDb:Q15637 PRIDE:Q15637 DNASU:7536
Ensembl:ENST00000227503 Ensembl:ENST00000334944
Ensembl:ENST00000377387 Ensembl:ENST00000377390
Ensembl:ENST00000377394 Ensembl:ENST00000433274 GeneID:7536
KEGG:hsa:7536 UCSC:uc001oaz.2 UCSC:uc001oba.2 UCSC:uc001obb.2
UCSC:uc001obc.2 UCSC:uc001obd.2 CTD:7536 GeneCards:GC11M064532
HGNC:HGNC:12950 HPA:HPA018883 MIM:601516 neXtProt:NX_Q15637
PharmGKB:PA37533 HOVERGEN:HBG063318 ChiTaRS:SF1
EvolutionaryTrace:Q15637 GenomeRNAi:7536 NextBio:29487
ArrayExpress:Q15637 Bgee:Q15637 CleanEx:HS_SF1
Genevestigator:Q15637 GermOnline:ENSG00000168066 Uniprot:Q15637
Length = 639
Score = 562 (202.9 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 132/328 (40%), Positives = 198/328 (60%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--EVLNEHKRQQLRELAALNGT 366
+ P E+E LH LV A T E+++ A + +L Q ++ E N+ ++ QLRELA LNGT
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGT 253
Query: 367 IRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK------GTTGK 420
+R+++ R+ R + S T + + +C CG GH DC + K
Sbjct: 254 LREDDN-RIL-----RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDK 306
Query: 421 -KMDDEYQNFLAELGGTLPESASKQSTT 447
+MD EY + +AELG P AS ST+
Sbjct: 307 ARMDKEYLSLMAELGEA-PVPASVGSTS 333
Score = 58 (25.5 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 685 SSEAQQHSFPPGVQXXXXXXXXXXXXNMYGS-SMPPMPPNVQP 726
++ A S PP Q M G+ +M P+PP VQP
Sbjct: 533 TTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQP 575
Score = 37 (18.1 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 764 PWATNPPVQPPVSSA 778
P A PP PP SA
Sbjct: 579 PGAPPPPPPPPPGSA 593
Score = 37 (18.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 764 PWATN---PPVQPPVSSAEKSN 782
PW PP PP SS+ S+
Sbjct: 499 PWQQQQQQPPPPPPPSSSMASS 520
Score = 37 (18.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 690 QHSFPPGVQXXXXXXXXXXXXNMYGSSMPPMPPNVQPAYATAPLG 734
Q PPG MY PP PP + P+ +G
Sbjct: 574 QPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPP-MDPSNFVTMMG 617
>UNIPROTKB|F1RQR0 [details] [associations]
symbol:SF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050810 "regulation of steroid biosynthetic process"
evidence=IEA] [GO:0033327 "Leydig cell differentiation"
evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
[GO:0022402 "cell cycle process" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 GO:GO:0033327 GO:GO:0050810
GO:GO:0046872 GO:GO:0008270 GO:GO:0005681 GO:GO:0003723
GeneTree:ENSGT00550000074434 GO:GO:0022402 GO:GO:0030238
OMA:GDGPSHE EMBL:FP101995 Ensembl:ENSSSCT00000014232
ArrayExpress:F1RQR0 Uniprot:F1RQR0
Length = 639
Score = 562 (202.9 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 132/328 (40%), Positives = 198/328 (60%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--EVLNEHKRQQLRELAALNGT 366
+ P E+E LH LV A T E+++ A + +L Q ++ E N+ ++ QLRELA LNGT
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGT 253
Query: 367 IRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK------GTTGK 420
+R+++ R+ R + S T + + +C CG GH DC + K
Sbjct: 254 LREDDN-RIL-----RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDK 306
Query: 421 -KMDDEYQNFLAELGGTLPESASKQSTT 447
+MD EY + +AELG P AS ST+
Sbjct: 307 ARMDKEYLSLMAELGEA-PVPASVGSTS 333
Score = 58 (25.5 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 685 SSEAQQHSFPPGVQXXXXXXXXXXXXNMYGS-SMPPMPPNVQP 726
++ A S PP Q M G+ +M P+PP VQP
Sbjct: 533 TTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQP 575
Score = 37 (18.1 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 764 PWATNPPVQPPVSSA 778
P A PP PP SA
Sbjct: 579 PGAPPPPPPPPPGSA 593
Score = 37 (18.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 764 PWATN---PPVQPPVSSAEKSN 782
PW PP PP SS+ S+
Sbjct: 499 PWQQQQQQPPPPPPPSSSMASS 520
Score = 37 (18.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 690 QHSFPPGVQXXXXXXXXXXXXNMYGSSMPPMPPNVQPAYATAPLG 734
Q PPG MY PP PP + P+ +G
Sbjct: 574 QPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPP-MDPSNFVTMMG 617
>UNIPROTKB|E2RRT4 [details] [associations]
symbol:SF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098
PROSITE:PS50084 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GeneTree:ENSGT00550000074434 OMA:GDGPSHE EMBL:AAEX03011644
ProteinModelPortal:E2RRT4 Ensembl:ENSCAFT00000022618 Uniprot:E2RRT4
Length = 638
Score = 562 (202.9 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 132/328 (40%), Positives = 198/328 (60%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--EVLNEHKRQQLRELAALNGT 366
+ P E+E LH LV A T E+++ A + +L Q ++ E N+ ++ QLRELA LNGT
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGT 253
Query: 367 IRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK------GTTGK 420
+R+++ R+ R + S T + + +C CG GH DC + K
Sbjct: 254 LREDDN-RIL-----RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDK 306
Query: 421 -KMDDEYQNFLAELGGTLPESASKQSTT 447
+MD EY + +AELG P AS ST+
Sbjct: 307 ARMDKEYLSLMAELGEA-PVPASVGSTS 333
Score = 58 (25.5 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 685 SSEAQQHSFPPGVQXXXXXXXXXXXXNMYGS-SMPPMPPNVQP 726
++ A S PP Q M G+ +M P+PP VQP
Sbjct: 533 TTSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQP 575
Score = 37 (18.1 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 764 PWATNPPVQPPVSSA 778
P A PP PP SA
Sbjct: 579 PGAPPPPPPPPPGSA 593
Score = 37 (18.1 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 764 PWATN---PPVQPPVSSAEKSN 782
PW PP PP SS+ S+
Sbjct: 499 PWQQQQQQPPPPPPPSSSMASS 520
>ZFIN|ZDB-GENE-030131-2492 [details] [associations]
symbol:sf1 "splicing factor 1" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50158 SMART:SM00322
SMART:SM00343 ZFIN:ZDB-GENE-030131-2492 GO:GO:0008270 GO:GO:0003723
GO:GO:0060041 eggNOG:COG5176 HOVERGEN:HBG063318 OrthoDB:EOG4VHK6F
EMBL:BC163938 IPI:IPI00902082 UniGene:Dr.132180 STRING:B3DKQ7
HOGENOM:HOG000170299 ArrayExpress:B3DKQ7 Uniprot:B3DKQ7
Length = 663
Score = 554 (200.1 bits), Expect = 9.6e-60, Sum P(3) = 9.6e-60
Identities = 134/328 (40%), Positives = 199/328 (60%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW+ + P +P G+ D E + ++ +++R L++G L +
Sbjct: 88 KRKRSRWSSETPDQKTVIPGMPTVIPPGLTRDQERAYIVQLQIEDLTRKLRTGDLGIPVN 147
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTREYR R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 148 PE-DRSPSPEPIYNSEGKRLNTREYRTRKKLEEERHSLITEMVGLNPEFKPPADYKPPAT 206
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 207 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECCAKIMIRGKGSVKEGKVGRK-DG 265
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--EVLNEHKRQQLRELAALNGT 366
+ P E+E LH LV A T E+++ A + +L Q ++ E N+ ++ QLRELA LNGT
Sbjct: 266 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGT 325
Query: 367 IRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKGT----TGK-- 420
+R+++ R+ P Q P R+ T + LC CG GH + DC + G+
Sbjct: 326 LREDDN-RIL-RPW--QSTEP-RSIT--NTTLCTKCGGAGHISSDCKFTSSFAPRPGEPP 378
Query: 421 -------KMDDEYQNFLAELG-GTLPES 440
+MD EY + +AELG +P S
Sbjct: 379 QSAQDKARMDKEYLSLMAELGEAPVPSS 406
Score = 46 (21.3 bits), Expect = 9.6e-60, Sum P(3) = 9.6e-60
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 711 NMYGSSMPPMPPNVQPAYATAP 732
NM G MPP P + P + P
Sbjct: 465 NMGGPPMPPNPNGMPPPWMQPP 486
Score = 43 (20.2 bits), Expect = 2.0e-59, Sum P(3) = 2.0e-59
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 717 MPPMPPNVQP 726
+PP PPN QP
Sbjct: 513 LPPPPPNNQP 522
Score = 43 (20.2 bits), Expect = 6.6e-59, Sum P(3) = 6.6e-59
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 712 MYGSSMPPMPPNVQP 726
M SM P PP VQP
Sbjct: 589 MGNPSMVPPPPGVQP 603
Score = 42 (19.8 bits), Expect = 9.6e-60, Sum P(3) = 9.6e-60
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 764 PWATNPPVQPPVSSAEKS 781
PW P PP SS S
Sbjct: 532 PWQQQAPPPPPTSSMATS 549
Score = 39 (18.8 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 718 PPMPPNVQPAYATAPLG 734
PP+PP P P G
Sbjct: 603 PPLPPGAPPPPPPPPPG 619
Score = 39 (18.8 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 690 QHSFPPGVQXXXXXXXXXXXXNMYGSSMPPMPPNVQPAYAT 730
Q PPG MY PP PP + P + T
Sbjct: 602 QPPLPPGAPPPPPPPPPGSAGMMYAP--PPPPPPMDPNFVT 640
Score = 38 (18.4 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 759 NLGNVPWATNPPVQPP 774
N+G P NP PP
Sbjct: 465 NMGGPPMPPNPNGMPP 480
Score = 37 (18.1 bits), Expect = 3.2e-59, Sum P(3) = 3.2e-59
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 764 PWATNPPVQPPVSSA 778
P A PP PP SA
Sbjct: 607 PGAPPPPPPPPPGSA 621
>POMBASE|SPCC962.06c [details] [associations]
symbol:bpb1 "zinc finger splicing factor Bpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=IDA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IDA]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 PomBase:SPCC962.06c
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 HSSP:Q9BW01 KO:K13095 GO:GO:0000243 EMBL:AF073779
PIR:T41653 RefSeq:NP_587871.1 ProteinModelPortal:O74555 SMR:O74555
STRING:O74555 EnsemblFungi:SPCC962.06c.1 GeneID:2538832
KEGG:spo:SPCC962.06c HOGENOM:HOG000197271 OMA:RIEEISH
OrthoDB:EOG4HQHTF NextBio:20800014 GO:GO:0000349 Uniprot:O74555
Length = 587
Score = 592 (213.5 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 127/279 (45%), Positives = 179/279 (64%)
Query: 167 EIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKER 226
E+ +LN RL EI++ L++G + E RSPSP P YDN G R+NTRE R +++L ER
Sbjct: 103 ELYSLNVRLEEITQKLRTGDVVPHHRE--RSPSPPPQYDNHGRRLNTREIRYKKKLEDER 160
Query: 227 QEIISQIIKRNPAFKPPADYR-PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERE 285
II + +K P F+ P+DYR P K Q+K+Y+P+K+YP NFIGL+IGPRG+T K ME +
Sbjct: 161 HRIIERAMKMVPGFRAPSDYRRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAK 220
Query: 286 TGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQP- 344
+GAKI IRGKGSVKEG+ + D + EDLH LV A++++ + A +++ ++Q
Sbjct: 221 SGAKIAIRGKGSVKEGK--GRSDPSVRGNMEEDLHCLVTADSEDKINHAIKLIDNVIQTA 278
Query: 345 --VDEVLNEHKRQQLRELAALNGTIRDEE--YCRLCGEPGHRQYACPSRTSTFKSDVLCK 400
V E N+ KR QLR+LA LNGT+RD+E C+ CG GHR++ CP R + +++C+
Sbjct: 279 ASVPEGQNDLKRNQLRQLATLNGTLRDDENQVCQNCGNVGHRRFDCPERIN-HTMNIVCR 337
Query: 401 ICGDGGHPTIDCLVKGT----TGKKMDDEYQNFLAELGG 435
CG GH DC V+ D EYQ+ + ELGG
Sbjct: 338 HCGSIGHIARDCPVRDQQPPMADSTADREYQSLMQELGG 376
Score = 37 (18.1 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 714 GSSMPPMPPNVQPAYATAP 732
G ++PP P P Y P
Sbjct: 528 GMALPPGMPAPFPGYPAVP 546
>MGI|MGI:1095403 [details] [associations]
symbol:Sf1 "splicing factor 1" species:10090 "Mus musculus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0022402
"cell cycle process" evidence=IGI] [GO:0030238 "male sex
determination" evidence=IGI] [GO:0033327 "Leydig cell
differentiation" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048662 "negative regulation of smooth muscle
cell proliferation" evidence=ISO] [GO:0050810 "regulation of
steroid biosynthetic process" evidence=IGI] InterPro:IPR001878
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098
PROSITE:PS50084 PROSITE:PS50158 SMART:SM00322 SMART:SM00343
MGI:MGI:1095403 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0033327 GO:GO:0050810 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0048662 Gene3D:4.10.60.10 eggNOG:COG5176
GeneTree:ENSGT00550000074434 GO:GO:0022402 GO:GO:0030238
EMBL:AC127556 HOVERGEN:HBG063318 ChiTaRS:SF1 EMBL:X80159
EMBL:X85802 EMBL:Y08907 EMBL:Y12838 EMBL:AC167245 EMBL:BC009091
EMBL:BC055370 IPI:IPI00116284 IPI:IPI00387376 IPI:IPI01008154
UniGene:Mm.256422 ProteinModelPortal:Q64213 SMR:Q64213
STRING:Q64213 PhosphoSite:Q64213 PaxDb:Q64213 PRIDE:Q64213
Ensembl:ENSMUST00000131252 HOGENOM:HOG000237321 InParanoid:Q64213
OMA:GDGPSHE Bgee:Q64213 CleanEx:MM_SF1 Genevestigator:Q64213
GermOnline:ENSMUSG00000024949 Uniprot:Q64213
Length = 653
Score = 561 (202.5 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 132/328 (40%), Positives = 198/328 (60%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--EVLNEHKRQQLRELAALNGT 366
+ P E+E LH LV A T E+++ A + +L Q ++ E N+ ++ QLRELA LNGT
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGT 253
Query: 367 IRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK------GTTGK 420
+R+++ R+ R + S T + + +C CG GH DC + K
Sbjct: 254 LREDDN-RIL-----RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDK 306
Query: 421 -KMDDEYQNFLAELGGTLPESASKQSTT 447
+MD EY + +AELG P AS ST+
Sbjct: 307 ARMDKEYLSLMAELGEA-PVPASVGSTS 333
Score = 58 (25.5 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 685 SSEAQQHSFPPGVQXXXXXXXXXXXXNMYGS-SMPPMPPNVQP 726
++ A S PP Q M G+ +M P+PP VQP
Sbjct: 533 TTSAGTGSIPPWQQQQAAAAASPGTPQMQGNPTMVPLPPGVQP 575
Score = 37 (18.1 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 764 PWATN---PPVQPPVSSAEKSN 782
PW PP PP SS+ S+
Sbjct: 499 PWQQQQQQPPPPPPPSSSMASS 520
>UNIPROTKB|F1LSC3 [details] [associations]
symbol:Sf1 "Protein Sf1" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 RGD:620645
GO:GO:0033327 GO:GO:0050810 GO:GO:0046872 GO:GO:0008270
GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
GeneTree:ENSGT00550000074434 GO:GO:0022402 GO:GO:0030238
IPI:IPI00561804 PRIDE:F1LSC3 Ensembl:ENSRNOT00000028628
ArrayExpress:F1LSC3 Uniprot:F1LSC3
Length = 653
Score = 561 (202.5 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 132/328 (40%), Positives = 198/328 (60%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--EVLNEHKRQQLRELAALNGT 366
+ P E+E LH LV A T E+++ A + +L Q ++ E N+ ++ QLRELA LNGT
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGT 253
Query: 367 IRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK------GTTGK 420
+R+++ R+ R + S T + + +C CG GH DC + K
Sbjct: 254 LREDDN-RIL-----RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDK 306
Query: 421 -KMDDEYQNFLAELGGTLPESASKQSTT 447
+MD EY + +AELG P AS ST+
Sbjct: 307 ARMDKEYLSLMAELGEA-PVPASVGSTS 333
Score = 58 (25.5 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 685 SSEAQQHSFPPGVQXXXXXXXXXXXXNMYGS-SMPPMPPNVQP 726
++ A S PP Q M G+ +M P+PP VQP
Sbjct: 533 TTSAGTGSIPPWQQQQAAAAASPGTPQMQGNPTMVPLPPGVQP 575
Score = 37 (18.1 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 764 PWATN---PPVQPPVSSAEKSN 782
PW PP PP SS+ S+
Sbjct: 499 PWQQQQQQPPPPPPPSSSMASS 520
>DICTYBASE|DDB_G0293554 [details] [associations]
symbol:sf1 "CCHC-type zinc finger-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0000243 "commitment
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50158 SMART:SM00322
SMART:SM00343 dictyBase:DDB_G0293554 GenomeReviews:CM000155_GR
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0000398
EMBL:AAFI02000218 HSSP:Q9BW01 eggNOG:COG5176 KO:K13095
RefSeq:XP_629004.1 ProteinModelPortal:Q54BM5
EnsemblProtists:DDB0233391 GeneID:8629288 KEGG:ddi:DDB_G0293554
InParanoid:Q54BM5 OMA:ENDELHV GO:GO:0000243 Uniprot:Q54BM5
Length = 501
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 137/314 (43%), Positives = 189/314 (60%)
Query: 134 RKRRSRWADDEPKP---VIQLPDFMKDFTGGIEFDPEIQALNSRLL--EISRMLQSGLPL 188
R R SRW D P V K G+ D +I AL RL EI++ + G P+
Sbjct: 58 RTRLSRW--DTPLTNDGVSPFSSIFKTLPPGLT-DEQIAALILRLRVDEITKKITIG-PI 113
Query: 189 D-DRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYR 247
+ + +RSPSP P YDN G R NTRE R +E+L KER +++ + NP +KPP+DY+
Sbjct: 114 EFTERDRERSPSPPPTYDNNGKRSNTREQRIKEKLQKERHQLVVTAQQINPTYKPPSDYQ 173
Query: 248 PP--KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQ 305
PP K +K+YIP+K +P YNFIGLIIGPRGNTQKRME+E+GAKI IRGKGS ++G+
Sbjct: 174 PPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRDGK--- 230
Query: 306 KRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNG 365
K EN++LHVL+ A+T + L+ A +V + L PV+E NEHKRQQLRELA +NG
Sbjct: 231 --PTKLQFQENDELHVLLTADTVDQLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMNG 288
Query: 366 TIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKGTTGKK--MD 423
T+R+ G+R + P D+ C CG+ HP+ DC ++ + ++
Sbjct: 289 TLRERP-----AYMGNRSWT-PV-------DIKCVQCGETSHPSSDCPLRSNESNQQYIE 335
Query: 424 DEYQNFLAELGGTL 437
EYQ F+ E+ +L
Sbjct: 336 SEYQKFIDEMSKSL 349
>UNIPROTKB|F1LM37 [details] [associations]
symbol:Sf1 "Protein Sf1" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 RGD:620645
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10
GeneTree:ENSGT00550000074434 IPI:IPI00558327
Ensembl:ENSRNOT00000044866 ArrayExpress:F1LM37 Uniprot:F1LM37
Length = 548
Score = 561 (202.5 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 132/328 (40%), Positives = 198/328 (60%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--EVLNEHKRQQLRELAALNGT 366
+ P E+E LH LV A T E+++ A + +L Q ++ E N+ ++ QLRELA LNGT
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGT 253
Query: 367 IRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK------GTTGK 420
+R+++ R+ R + S T + + +C CG GH DC + K
Sbjct: 254 LREDDN-RIL-----RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQDK 306
Query: 421 -KMDDEYQNFLAELGGTLPESASKQSTT 447
+MD EY + +AELG P AS ST+
Sbjct: 307 ARMDKEYLSLMAELGEA-PVPASVGSTS 333
Score = 37 (18.1 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 764 PWATN---PPVQPPVSSAEKSN 782
PW PP PP SS+ S+
Sbjct: 499 PWQQQQQQPPPPPPPSSSMASS 520
>WB|WBGene00013808 [details] [associations]
symbol:sfa-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0016477 "cell migration" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0046872 GO:GO:0008270
GO:GO:0010171 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0040020
HSSP:Q9BW01 KO:K13095 GeneTree:ENSGT00550000074434 EMBL:AL117204
EMBL:AJ243905 PIR:T31502 RefSeq:NP_503033.1 UniGene:Cel.19529
ProteinModelPortal:G5EF97 SMR:G5EF97 EnsemblMetazoa:Y116A8C.32
GeneID:178486 KEGG:cel:CELE_Y116A8C.32 CTD:178486
WormBase:Y116A8C.32 OMA:ANGARCS NextBio:901328 Uniprot:G5EF97
Length = 699
Score = 559 (201.8 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 133/320 (41%), Positives = 181/320 (56%)
Query: 134 RKRRSRWADDE---P-KPVIQLPDFMKDFTGGIEFDPEIQALNSRLLEISRMLQSGLPLD 189
++RRSRW+ + P P I D +D EI+ +L R+ G+
Sbjct: 188 KERRSRWSTTKSFVPGMPTILPADLTEDQRNAYLLQLEIEDATRKL----RLADFGVA-- 241
Query: 190 DRPEG-QRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRP 248
EG +RSPSPEP+YD G R+NTRE R R+ L + R E I ++K NP FKPPADYR
Sbjct: 242 ---EGRERSPSPEPVYDANGKRLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYRA 298
Query: 249 P--KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQK 306
P +L K++IP +++P NF+GL+IGPRGNT K +E ETGAKI+IRGKGS+KEG+L +
Sbjct: 299 PNIRLHDKVWIPQEQFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKEGKLTNR 358
Query: 307 RDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVDEVL--NEHKRQQLRELAALN 364
L P P ENE LH V ++ A +++++ + NE ++ QLRELA LN
Sbjct: 359 --LGPMPGENEPLHAYVTGTDMNVIKKACEKIKQVIAEATALPDNNELRKLQLRELALLN 416
Query: 365 GTIRDEEY-----CRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCL-VKGTT 418
GT R E+ C CG H+ + CP + + + C CG GH + DC KG
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNV-TNQIKCTNCGAFGHISKDCKNPKGMY 475
Query: 419 GKK--MDDEYQNFLAELGGT 436
+ MDDEY +AELG T
Sbjct: 476 ASEAGMDDEYSALMAELGET 495
Score = 38 (18.4 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 718 PPMPPNVQPAYATAP 732
PPMP ++ A AP
Sbjct: 680 PPMPGDLSSLLAAAP 694
Score = 38 (18.4 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 781 SNYGADAEYEKFMAEM 796
S G D EY MAE+
Sbjct: 477 SEAGMDDEYSALMAEL 492
>GENEDB_PFALCIPARUM|PFF1135w [details] [associations]
symbol:PFF1135w "transcription or splicing
factor-like protein, putative" species:5833 "Plasmodium falciparum"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
SMART:SM00343 GO:GO:0008380 GO:GO:0008270 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K13095 EMBL:AL844505
RefSeq:XP_966218.1 ProteinModelPortal:C6KT72
EnsemblProtists:PFF1135w:mRNA GeneID:3885872 KEGG:pfa:PFF1135w
EuPathDB:PlasmoDB:PF3D7_0623600 HOGENOM:HOG000281592
ProtClustDB:CLSZ2433258 Uniprot:C6KT72
Length = 615
Score = 484 (175.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 115/305 (37%), Positives = 171/305 (56%)
Query: 138 SRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNS-RLLEISRMLQSGLPLDDRPEGQR 196
++W ++ KP + LP F+ DF G+ Q L R E+++ L G L+ R
Sbjct: 46 NKWGSEDYKPYLPLP-FV-DFPPGLTPAQLDQFLREQRYDELTKKLNKG-ELEYVDPDIR 102
Query: 197 SPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLY 256
PSP PIYD G RINTRE R + + +E +I ++K F P Y+P K +K+
Sbjct: 103 PPSPPPIYDKNGSRINTREARIKNSMIEEHHRLIEYLLKHVDGFVAPPTYKPIKKIRKIE 162
Query: 257 IPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSEN 316
IP+ +YP YNF+GLIIGPRG KR+E E+GA+I IRGKG++KEG+ K D + +
Sbjct: 163 IPIDKYPEYNFMGLIIGPRGCNHKRLEAESGAQISIRGKGTLKEGK---KTDHQTEIEAA 219
Query: 317 EDLHVLVEAETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNG-TIR--DEEYC 373
HV + A+T+E +E A +++ LL P + E+KR+ L +LA +NG + D + C
Sbjct: 220 MPKHVHIAADTEECVEKAVSLITPLLDPFHPLHEEYKRKGLEQLALVNGINLNQLDTQKC 279
Query: 374 RLCGEPGHRQYACPSRTS--TFKS-DVLCKICGDGGHPTIDC-LVKGTTG--KKMDDEYQ 427
+C H + CP + FK ++ C +CGD GH T+DC L K ++ K D E
Sbjct: 280 SICNSNTHLTFECPENMNIQNFKKPEIKCNLCGDHGHITLDCKLAKQSSNYINKNDLENS 339
Query: 428 NFLAE 432
N L++
Sbjct: 340 NNLSQ 344
Score = 41 (19.5 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 420 KKMDDEYQNFLAELGGTLPESASK 443
KKMD EY+ + EL P K
Sbjct: 384 KKMDLEYEKMMNELNSD-PNKEKK 406
Score = 37 (18.1 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 786 DAEYEKFMAEM 796
D EYEK M E+
Sbjct: 387 DLEYEKMMNEL 397
>UNIPROTKB|C6KT72 [details] [associations]
symbol:PFF1135w "Transcription or splicing factor-like
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
SMART:SM00343 GO:GO:0008380 GO:GO:0008270 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K13095 EMBL:AL844505
RefSeq:XP_966218.1 ProteinModelPortal:C6KT72
EnsemblProtists:PFF1135w:mRNA GeneID:3885872 KEGG:pfa:PFF1135w
EuPathDB:PlasmoDB:PF3D7_0623600 HOGENOM:HOG000281592
ProtClustDB:CLSZ2433258 Uniprot:C6KT72
Length = 615
Score = 484 (175.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 115/305 (37%), Positives = 171/305 (56%)
Query: 138 SRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNS-RLLEISRMLQSGLPLDDRPEGQR 196
++W ++ KP + LP F+ DF G+ Q L R E+++ L G L+ R
Sbjct: 46 NKWGSEDYKPYLPLP-FV-DFPPGLTPAQLDQFLREQRYDELTKKLNKG-ELEYVDPDIR 102
Query: 197 SPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLY 256
PSP PIYD G RINTRE R + + +E +I ++K F P Y+P K +K+
Sbjct: 103 PPSPPPIYDKNGSRINTREARIKNSMIEEHHRLIEYLLKHVDGFVAPPTYKPIKKIRKIE 162
Query: 257 IPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSEN 316
IP+ +YP YNF+GLIIGPRG KR+E E+GA+I IRGKG++KEG+ K D + +
Sbjct: 163 IPIDKYPEYNFMGLIIGPRGCNHKRLEAESGAQISIRGKGTLKEGK---KTDHQTEIEAA 219
Query: 317 EDLHVLVEAETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNG-TIR--DEEYC 373
HV + A+T+E +E A +++ LL P + E+KR+ L +LA +NG + D + C
Sbjct: 220 MPKHVHIAADTEECVEKAVSLITPLLDPFHPLHEEYKRKGLEQLALVNGINLNQLDTQKC 279
Query: 374 RLCGEPGHRQYACPSRTS--TFKS-DVLCKICGDGGHPTIDC-LVKGTTG--KKMDDEYQ 427
+C H + CP + FK ++ C +CGD GH T+DC L K ++ K D E
Sbjct: 280 SICNSNTHLTFECPENMNIQNFKKPEIKCNLCGDHGHITLDCKLAKQSSNYINKNDLENS 339
Query: 428 NFLAE 432
N L++
Sbjct: 340 NNLSQ 344
Score = 41 (19.5 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 420 KKMDDEYQNFLAELGGTLPESASK 443
KKMD EY+ + EL P K
Sbjct: 384 KKMDLEYEKMMNELNSD-PNKEKK 406
Score = 37 (18.1 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 786 DAEYEKFMAEM 796
D EYEK M E+
Sbjct: 387 DLEYEKMMNEL 397
>SGD|S000004106 [details] [associations]
symbol:MSL5 "Component of the commitment complex"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IDA] [GO:0045131 "pre-mRNA branch point binding"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 InterPro:IPR013041 SGD:S000004106
GO:GO:0046872 GO:GO:0008270 EMBL:BK006945 EMBL:X89514
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 SUPFAM:SSF49348
EMBL:U53877 GO:GO:0000398 KO:K13095 GO:GO:0000243
HOGENOM:HOG000197271 OrthoDB:EOG4HQHTF EMBL:Z73288 PIR:S64953
RefSeq:NP_013217.1 PDB:3FMA PDBsum:3FMA ProteinModelPortal:Q12186
SMR:Q12186 DIP:DIP-991N IntAct:Q12186 MINT:MINT-489287
STRING:Q12186 PaxDb:Q12186 EnsemblFungi:YLR116W GeneID:850807
KEGG:sce:YLR116W CYGD:YLR116w GeneTree:ENSGT00550000074434
OMA:PPASHIS EvolutionaryTrace:Q12186 NextBio:967037
Genevestigator:Q12186 GermOnline:YLR116W GO:GO:0045131
Uniprot:Q12186
Length = 476
Score = 485 (175.8 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 99/223 (44%), Positives = 140/223 (62%)
Query: 196 RSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY-RPPKLQKK 254
RSPSP P+YD G R NTRE R R++L ER +++ +K P F PP DY RP K Q K
Sbjct: 92 RSPSPPPVYDAQGKRTNTREQRYRKKLEDERIKLVEIALKTIPYFVPPDDYKRPTKFQDK 151
Query: 255 LYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPS 314
YIP+ +YP NF+GL++GPRG T ++++ ++ KI IRG+GSVKEG+ DL P
Sbjct: 152 YYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGK--NASDLPPGAM 209
Query: 315 ENED-LHVLVEAETQESLEGAAAMVEKL-LQPVD--EVLNEHKRQQLRELAALNGTIR-D 369
ED LH L+ A++++ ++ + + + ++ V E N+ KR QLRELA LNGT+R D
Sbjct: 210 NFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRED 269
Query: 370 EEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDC 412
C +CG H++Y CP+R ++CKICG GH + DC
Sbjct: 270 NRPCPICGLKDHKRYDCPNRKIPNIQGIVCKICGQTGHFSRDC 312
Score = 38 (18.4 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 16/67 (23%), Positives = 20/67 (29%)
Query: 715 SSMPPMPPNVQPAYATAPLGXXXXXXXXXXXXXXXXXXXXDHSQNLGNVPWATNPPVQ-P 773
S+ PP+ YA +P S VP PP+Q P
Sbjct: 360 STEPPLKFPASSRYAPSPSPPASHISRQAQNVTPTPPPGLTSSSFSSGVPGIAPPPLQSP 419
Query: 774 PVSSAEK 780
P S K
Sbjct: 420 PESEQPK 426
>CGD|CAL0004717 [details] [associations]
symbol:orf19.329 species:5476 "Candida albicans" [GO:0000243
"commitment complex" evidence=IEA] [GO:0045131 "pre-mRNA branch
point binding" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR001878 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084
PROSITE:PS50158 SMART:SM00322 SMART:SM00343 CGD:CAL0004717
GO:GO:0008380 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720024.1 RefSeq:XP_720156.1 HSSP:Q9BW01
ProteinModelPortal:Q5AED9 STRING:Q5AED9 GeneID:3638211
GeneID:3638361 KEGG:cal:CaO19.329 KEGG:cal:CaO19.7961
eggNOG:COG5176 KO:K13095 Uniprot:Q5AED9
Length = 455
Score = 415 (151.1 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 92/247 (37%), Positives = 143/247 (57%)
Query: 188 LDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYR 247
+D+ +R PSP P YD G R NTRE R E L KER E++ + P++YR
Sbjct: 84 VDETDHYKRDPSPPPKYDKNGNRTNTRERRVTEALEKERHELVELAASSIKNYMIPSNYR 143
Query: 248 -PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQK 306
P + ++LY+P+K+YP NF+G +IGPRGNT K+++ ++GA++ IRGKGSVKEG+
Sbjct: 144 RPSRTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDG 203
Query: 307 RDLKPDPSE-NEDLHVLVEAETQESLEGAAAMVEKLLQPV---DEVLNEHKRQQLRELAA 362
++ +DLHVL+ A++ + A +V +++ + + +N KR QL+ELA
Sbjct: 204 FGSSQTGTDIQDDLHVLITADSPLKISKAVKLVNEIIDKLIFSPQGMNFMKRDQLKELAV 263
Query: 363 LNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKGTTGKK- 421
LNGT+R+ + +P + + K ++CKICG+ GH DC K GK+
Sbjct: 264 LNGTLRETKPF----DPEAHEKKQQQQMDITK--IVCKICGNIGHIARDC--KQNNGKRP 315
Query: 422 MDDEYQN 428
+DD +N
Sbjct: 316 LDDNAEN 322
Score = 44 (20.5 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 769 PPVQPPVSSAEKSNYGADAEYEK 791
PP PP SA S + Y++
Sbjct: 363 PPPPPPAPSAAASGFATTENYKQ 385
Score = 41 (19.5 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 17/66 (25%), Positives = 21/66 (31%)
Query: 718 PPMPPNVQPAYAT-----APLGXXXXXXXXXXXXXXXXXXXXDHSQNLGNVPWATNPPVQ 772
PP PP P+ +T P ++ Q L P PP
Sbjct: 340 PPPPPPAPPSSSTEISKQVPPPPPPPPPPAPSAAASGFATTENYKQGLVPPPPPPPPPPP 399
Query: 773 PPVSSA 778
PPV SA
Sbjct: 400 PPVRSA 405
Score = 37 (18.1 bits), Expect = 8.2e-41, Sum P(2) = 8.2e-41
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 769 PPVQPPVSSAEKS 781
PP PP SS E S
Sbjct: 343 PPPAPPSSSTEIS 355
>UNIPROTKB|B4DX42 [details] [associations]
symbol:SF1 "Splicing factor 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0022402 "cell cycle process"
evidence=IEA] [GO:0030238 "male sex determination" evidence=IEA]
[GO:0033327 "Leydig cell differentiation" evidence=IEA] [GO:0050810
"regulation of steroid biosynthetic process" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 Pfam:PF00098 PROSITE:PS50084 PROSITE:PS50158
SMART:SM00322 SMART:SM00343 GO:GO:0033327 GO:GO:0050810
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0048662
Gene3D:4.10.60.10 GO:GO:0022402 GO:GO:0030238 EMBL:AP001462
UniGene:Hs.502829 HGNC:HGNC:12950 HOVERGEN:HBG063318 ChiTaRS:SF1
EMBL:AK301803 IPI:IPI00386118 SMR:B4DX42 STRING:B4DX42
Ensembl:ENST00000422298 UCSC:uc010rnm.2 Uniprot:B4DX42
Length = 433
Score = 401 (146.2 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 97/227 (42%), Positives = 137/227 (60%)
Query: 233 IIKRNPAFKPPADYRPP--KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKI 290
++ NP FKPPADY+PP ++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI
Sbjct: 1 MVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKI 60
Query: 291 VIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPVD--E 347
+IRGKGSVKEG++ +K D + P E+E LH LV A T E+++ A + +L Q ++ E
Sbjct: 61 MIRGKGSVKEGKVGRK-DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPE 119
Query: 348 VLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGH 407
N+ ++ QLRELA LNGT+R+++ R+ R + S T + + +C CG GH
Sbjct: 120 DQNDLRKMQLRELARLNGTLREDDN-RIL-----RPWQS-SETRSITNTTVCTKCGGAGH 172
Query: 408 PTIDCLVK------GTTGK-KMDDEYQNFLAELGGTLPESASKQSTT 447
DC + K +MD EY + +AELG P AS ST+
Sbjct: 173 IASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEA-PVPASVGSTS 218
Score = 37 (18.1 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 764 PWATN---PPVQPPVSSAEKSN 782
PW PP PP SS+ S+
Sbjct: 384 PWQQQQQQPPPPPPPSSSMASS 405
>RGD|620645 [details] [associations]
symbol:Sf1 "splicing factor 1" species:10116 "Rattus norvegicus"
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006917 "induction of apoptosis"
evidence=NAS] [GO:0022402 "cell cycle process" evidence=ISO]
[GO:0030238 "male sex determination" evidence=ISO] [GO:0033327
"Leydig cell differentiation" evidence=ISO] [GO:0048662 "negative
regulation of smooth muscle cell proliferation" evidence=IMP]
[GO:0050810 "regulation of steroid biosynthetic process"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:620645 GO:GO:0006917 GO:GO:0033327 GO:GO:0050810
GO:GO:0005681 GO:GO:0003723 GO:GO:0048662 HSSP:Q9BW01
eggNOG:COG5176 GO:GO:0022402 GO:GO:0030238 HOGENOM:HOG000237321
OrthoDB:EOG4VHK6F IPI:IPI00558327 EMBL:AF079873 UniGene:Rn.1074
UniGene:Rn.220071 STRING:O88629 UCSC:RGD:620645 InParanoid:O88629
ArrayExpress:O88629 Genevestigator:O88629 Uniprot:O88629
Length = 173
Score = 363 (132.8 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 80/180 (44%), Positives = 118/180 (65%)
Query: 229 IISQIIKRNPAFKPPADYRPP--KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERET 286
+I++++ NP FKPPADY+PP ++ K+ IP EYP NF+GL+IGPRGNT K +E+E
Sbjct: 1 LITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKEC 60
Query: 287 GAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLL-QPV 345
AKI+IRGKGSVKEG++ +K D + P E+E LH LV A T E+++ A + +L Q +
Sbjct: 61 NAKIMIRGKGSVKEGKVGRK-DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGI 119
Query: 346 D--EVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICG 403
+ E N+ ++ QLRELA LNGT+R+++ R+ R + S T + + +C CG
Sbjct: 120 ETPEDQNDLRKMQLRELARLNGTLREDDN-RIL-----RPWQS-SETRSITNTTVCTKCG 172
>UNIPROTKB|Q5W9D7 [details] [associations]
symbol:QKI "Protein quaking" species:9913 "Bos taurus"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006417
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0051028
eggNOG:COG5176 KO:K14945 HOGENOM:HOG000019831 HOVERGEN:HBG093883
EMBL:AB177986 IPI:IPI00690241 RefSeq:NP_001007818.1
UniGene:Bt.91293 ProteinModelPortal:Q5W9D7 SMR:Q5W9D7 STRING:Q5W9D7
PRIDE:Q5W9D7 GeneID:493722 KEGG:bta:493722 CTD:9444
NextBio:20865466 Uniprot:Q5W9D7
Length = 341
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206
>UNIPROTKB|Q9GMY1 [details] [associations]
symbol:QKI "Protein quaking" species:9615 "Canis lupus
familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006417
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0051028
eggNOG:COG5176 KO:K14945 HOGENOM:HOG000019831 HOVERGEN:HBG093883
CTD:9444 EMBL:AB047312 RefSeq:NP_001003021.1 UniGene:Cfa.57
ProteinModelPortal:Q9GMY1 SMR:Q9GMY1 PRIDE:Q9GMY1 GeneID:606754
KEGG:cfa:606754 NextBio:20892526 Uniprot:Q9GMY1
Length = 341
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206
>UNIPROTKB|Q96PU8 [details] [associations]
symbol:QKI "Protein quaking" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0017124
"SH3 domain binding" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0010628
"positive regulation of gene expression" evidence=IEA] [GO:0042552
"myelination" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0042759 "long-chain fatty acid
biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0008380
GO:GO:0007286 GO:GO:0006397 GO:GO:0003723 GO:GO:0042692
GO:GO:0042759 GO:GO:0042552 GO:GO:0010628 GO:GO:0001570
GO:GO:0051028 eggNOG:COG5176 KO:K14945 HOVERGEN:HBG093883
OMA:GMAFPTK OrthoDB:EOG4RFKSZ CTD:9444 EMBL:AB067798 EMBL:AB067799
EMBL:AB067800 EMBL:AB067801 EMBL:AB067808 EMBL:AF142417
EMBL:AF142418 EMBL:AF142419 EMBL:AF142420 EMBL:AF142421
EMBL:AF142422 EMBL:AY780788 EMBL:DQ323998 EMBL:AL356119
EMBL:AL031781 EMBL:BC012222 EMBL:BC019917 EMBL:AK027309
IPI:IPI00385562 IPI:IPI00514277 IPI:IPI00736672 IPI:IPI00749287
IPI:IPI00759828 IPI:IPI00942653 RefSeq:NP_006766.1
RefSeq:NP_996735.1 RefSeq:NP_996736.1 RefSeq:NP_996737.1
UniGene:Hs.510324 ProteinModelPortal:Q96PU8 SMR:Q96PU8
IntAct:Q96PU8 MINT:MINT-1445480 STRING:Q96PU8 PhosphoSite:Q96PU8
DMDM:74761039 PaxDb:Q96PU8 PRIDE:Q96PU8 DNASU:9444
Ensembl:ENST00000275262 Ensembl:ENST00000361195
Ensembl:ENST00000361752 Ensembl:ENST00000361758
Ensembl:ENST00000392127 Ensembl:ENST00000424802
Ensembl:ENST00000453779 GeneID:9444 KEGG:hsa:9444 UCSC:uc003que.3
UCSC:uc003quf.3 UCSC:uc003qug.3 UCSC:uc003quh.3 UCSC:uc003qui.3
UCSC:uc003quj.3 GeneCards:GC06P163835 HGNC:HGNC:21100 HPA:CAB022602
HPA:HPA019123 MIM:609590 neXtProt:NX_Q96PU8 PharmGKB:PA134912180
InParanoid:Q96PU8 ChiTaRS:QKI GenomeRNAi:9444 NextBio:35368
ArrayExpress:Q96PU8 Bgee:Q96PU8 Genevestigator:Q96PU8
GermOnline:ENSG00000112531 Uniprot:Q96PU8
Length = 341
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206
>UNIPROTKB|Q5W9D5 [details] [associations]
symbol:QKI "Protein quaking" species:9823 "Sus scrofa"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006417
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0051028
eggNOG:COG5176 KO:K14945 HOGENOM:HOG000019831 HOVERGEN:HBG093883
OrthoDB:EOG4RFKSZ CTD:9444 EMBL:AB177988 RefSeq:NP_001007196.1
UniGene:Ssc.7659 ProteinModelPortal:Q5W9D5 SMR:Q5W9D5 PRIDE:Q5W9D5
GeneID:492277 KEGG:ssc:492277 Uniprot:Q5W9D5
Length = 341
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206
>MGI|MGI:97837 [details] [associations]
symbol:Qk "quaking" species:10090 "Mus musculus" [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IGI] [GO:0008366 "axon ensheathment"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0017124
"SH3 domain binding" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0042552 "myelination"
evidence=IMP] [GO:0042692 "muscle cell differentiation"
evidence=IMP] [GO:0042759 "long-chain fatty acid biosynthetic
process" evidence=IMP] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:97837 GO:GO:0005886 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0008380 GO:GO:0007286
GO:GO:0006397 GO:GO:0003723 GO:GO:0042692 GO:GO:0042759
GO:GO:0042552 GO:GO:0010628 GO:GO:0001570 GO:GO:0051028
eggNOG:COG5176 GeneTree:ENSGT00550000074434 KO:K14945
HOVERGEN:HBG093883 OMA:GMAFPTK OrthoDB:EOG4RFKSZ EMBL:U44940
EMBL:AF090402 EMBL:AF090403 EMBL:AF090404 EMBL:AF091047
EMBL:AF090401 EMBL:AF090392 EMBL:AF090393 EMBL:AF090394
EMBL:AF090395 EMBL:AF090396 EMBL:AF090397 EMBL:AF090400
EMBL:AF467890 EMBL:AK005169 EMBL:AK132303 EMBL:BC053426
EMBL:BC056346 EMBL:AJ012812 EMBL:AJ012813 EMBL:AJ012814
EMBL:AJ012816 EMBL:AJ012817 EMBL:AJ012815 EMBL:AJ012818
EMBL:AJ012820 EMBL:AJ012819 IPI:IPI00130483 IPI:IPI00136596
IPI:IPI00759871 IPI:IPI00759885 IPI:IPI00759892 IPI:IPI00759906
IPI:IPI00759949 IPI:IPI00760097 RefSeq:NP_001152988.1
RefSeq:NP_001152989.1 RefSeq:NP_068681.1 UniGene:Mm.130694
UniGene:Mm.384135 UniGene:Mm.393248 PDB:4DNN PDBsum:4DNN
ProteinModelPortal:Q9QYS9 SMR:Q9QYS9 STRING:Q9QYS9
PhosphoSite:Q9QYS9 PaxDb:Q9QYS9 PRIDE:Q9QYS9
Ensembl:ENSMUST00000042296 Ensembl:ENSMUST00000097414 GeneID:19317
KEGG:mmu:19317 UCSC:uc008akb.2 UCSC:uc008ake.2 UCSC:uc012ajv.1
CTD:19317 InParanoid:Q9QYS9 NextBio:296279 Bgee:Q9QYS9
CleanEx:MM_QK Genevestigator:Q9QYS9 GermOnline:ENSMUSG00000062078
Uniprot:Q9QYS9
Length = 341
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206
>RGD|1584886 [details] [associations]
symbol:Qk "quaking" species:10116 "Rattus norvegicus"
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007286 "spermatid development" evidence=ISO] [GO:0008366 "axon
ensheathment" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] [GO:0017124 "SH3 domain binding" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0042552
"myelination" evidence=ISO] [GO:0042692 "muscle cell
differentiation" evidence=ISO] [GO:0042759 "long-chain fatty acid
biosynthetic process" evidence=ISO] [GO:0051028 "mRNA transport"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005886 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0008380 GO:GO:0007286
GO:GO:0006397 GO:GO:0003723 GO:GO:0042692 GO:GO:0042759
GO:GO:0042552 GO:GO:0010628 GO:GO:0001570 GO:GO:0051028
eggNOG:COG5176 HOGENOM:HOG000019831 HOVERGEN:HBG093883 OMA:GMAFPTK
OrthoDB:EOG4RFKSZ EMBL:AABR03000138 EMBL:AB054997 IPI:IPI00394474
UniGene:Rn.228876 ProteinModelPortal:Q91XU1 SMR:Q91XU1
STRING:Q91XU1 PhosphoSite:Q91XU1 RGD:628653 InParanoid:Q91XU1
ArrayExpress:Q91XU1 Genevestigator:Q91XU1
GermOnline:ENSRNOG00000017174 Uniprot:Q91XU1
Length = 341
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206
>UNIPROTKB|D4A2X0 [details] [associations]
symbol:Qk "Protein Qk" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 RGD:1584886
GO:GO:0003723 IPI:IPI00213936 PRIDE:D4A2X0
Ensembl:ENSRNOT00000023290 ArrayExpress:D4A2X0 Uniprot:D4A2X0
Length = 338
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206
>UNIPROTKB|F1LMH5 [details] [associations]
symbol:Qk "Protein Qk" species:10116 "Rattus norvegicus"
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0042759 "long-chain
fatty acid biosynthetic process" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 RGD:1584886
GO:GO:0005886 GO:GO:0005634 GO:GO:0007286 GO:GO:0003723
GO:GO:0042692 GO:GO:0042759 GO:GO:0042552 GO:GO:0010628
GO:GO:0001570 IPI:IPI01016326 Ensembl:ENSRNOT00000035402
ArrayExpress:F1LMH5 Uniprot:F1LMH5
Length = 341
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206
>TAIR|locus:2024326 [details] [associations]
symbol:AT1G09660 "AT1G09660" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003723
eggNOG:COG5176 EMBL:AC000132 KO:K14945 HSSP:Q32NN2
HOGENOM:HOG000238548 EMBL:AK118683 EMBL:AF419590 EMBL:AY079111
EMBL:BX842524 EMBL:AK175370 EMBL:AK175796 EMBL:AK176267
EMBL:AK176765 EMBL:AK176899 IPI:IPI00517028 IPI:IPI00535968
PIR:D86230 PIR:E86230 RefSeq:NP_172437.2 RefSeq:NP_973800.1
UniGene:At.10221 ProteinModelPortal:Q8GWR3 SMR:Q8GWR3 IntAct:Q8GWR3
EnsemblPlants:AT1G09660.1 GeneID:837494 KEGG:ath:AT1G09660
TAIR:At1g09660 InParanoid:Q8GWR3 OMA:VEASTQC PhylomeDB:Q8GWR3
ProtClustDB:CLSN2690390 Genevestigator:Q8GWR3 Uniprot:Q8GWR3
Length = 298
Score = 293 (108.2 bits), Expect = 4.1e-25, P = 4.1e-25
Identities = 63/131 (48%), Positives = 90/131 (68%)
Query: 248 PPKLQK--KLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQ 305
PP ++K +L +P+ +YP YNF+G I+GPRGN+ KR+E T ++ IRG+GSVK+ ++
Sbjct: 142 PPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEE 201
Query: 306 KRDLKPDPSEN-EDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRE 359
K KP E LHVL+EAE E LE A +E LL+P+DE ++ +KR+QL+E
Sbjct: 202 KLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKE 261
Query: 360 LAALNGTIRDE 370
LAALNGT+R+E
Sbjct: 262 LAALNGTLREE 272
>UNIPROTKB|F1NWU9 [details] [associations]
symbol:QKI "Protein quaking" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074434 IPI:IPI00682938 EMBL:AADN02035543
EMBL:AADN02035544 Ensembl:ENSGALT00000018845 ArrayExpress:F1NWU9
Uniprot:F1NWU9
Length = 334
Score = 292 (107.8 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTYRD 206
>UNIPROTKB|F1NWV0 [details] [associations]
symbol:QKI "Protein quaking" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0042759 "long-chain
fatty acid biosynthetic process" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0005886
GO:GO:0005634 GO:GO:0003723 GO:GO:0042759 GO:GO:0010628
GeneTree:ENSGT00550000074434 OMA:GMAFPTK IPI:IPI00760364
EMBL:AADN02035543 EMBL:AADN02035544 Ensembl:ENSGALT00000018844
ArrayExpress:F1NWV0 Uniprot:F1NWV0
Length = 340
Score = 292 (107.8 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTYRD 206
>UNIPROTKB|Q9YH18 [details] [associations]
symbol:QKI "Protein quaking" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0017124
"SH3 domain binding" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006417
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0051028
eggNOG:COG5176 KO:K14945 HOGENOM:HOG000019831 HOVERGEN:HBG093883
CTD:9444 EMBL:U86764 EMBL:U86765 EMBL:U86766 EMBL:U86767
IPI:IPI00582039 IPI:IPI00595503 IPI:IPI00682938 IPI:IPI00760364
RefSeq:NP_989641.2 UniGene:Gga.3168 ProteinModelPortal:Q9YH18
SMR:Q9YH18 STRING:Q9YH18 GeneID:374204 KEGG:gga:374204
InParanoid:Q9YH18 NextBio:20813708 Uniprot:Q9YH18
Length = 340
Score = 292 (107.8 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 70/172 (40%), Positives = 106/172 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ E ++ L+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAILNGTYRD 206
>ZFIN|ZDB-GENE-040426-1462 [details] [associations]
symbol:qki2 "QKI, KH domain containing, RNA
binding 2" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0017124 "SH3 domain binding"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1462 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0051028 eggNOG:COG5176
GeneTree:ENSGT00550000074434 KO:K14945 EMBL:AB086654 EMBL:BC061709
EMBL:BC065344 IPI:IPI00501345 IPI:IPI00760231 RefSeq:NP_957136.2
UniGene:Dr.133657 ProteinModelPortal:Q6P104 SMR:Q6P104
Ensembl:ENSDART00000027034 GeneID:393815 KEGG:dre:393815 CTD:393815
HOGENOM:HOG000019831 HOVERGEN:HBG093883 OMA:GMAFPTK
OrthoDB:EOG4RFKSZ NextBio:20814805 Bgee:Q6P104 Uniprot:Q6P104
Length = 319
Score = 292 (107.8 bits), Expect = 5.3e-25, P = 5.3e-25
Identities = 61/126 (48%), Positives = 87/126 (69%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>UNIPROTKB|F1N7N1 [details] [associations]
symbol:QKI "Protein quaking" species:9913 "Bos taurus"
[GO:0042759 "long-chain fatty acid biosynthetic process"
evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0010628
"positive regulation of gene expression" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0005886 GO:GO:0005634 GO:GO:0007286 GO:GO:0003723
GO:GO:0042692 GO:GO:0042759 GO:GO:0042552 GO:GO:0010628
GO:GO:0001570 GeneTree:ENSGT00550000074434 IPI:IPI00690241
EMBL:DAAA02027443 EMBL:DAAA02027444 EMBL:DAAA02027445
EMBL:DAAA02027446 EMBL:DAAA02027447 Ensembl:ENSBTAT00000054202
OMA:CLTHLKF Uniprot:F1N7N1
Length = 315
Score = 291 (107.5 bits), Expect = 6.8e-25, P = 6.8e-25
Identities = 61/126 (48%), Positives = 87/126 (69%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 55 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 114
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 115 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 174
Query: 364 NGTIRD 369
NGT RD
Sbjct: 175 NGTYRD 180
>UNIPROTKB|F1PLY2 [details] [associations]
symbol:QKI "Protein quaking" species:9615 "Canis lupus
familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074434 EMBL:AAEX03000337
EMBL:AAEX03000338 Ensembl:ENSCAFT00000001203 Uniprot:F1PLY2
Length = 310
Score = 291 (107.5 bits), Expect = 6.8e-25, P = 6.8e-25
Identities = 61/126 (48%), Positives = 87/126 (69%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 55 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 114
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 115 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 174
Query: 364 NGTIRD 369
NGT RD
Sbjct: 175 NGTYRD 180
>UNIPROTKB|F1PX61 [details] [associations]
symbol:QKI "Protein quaking" species:9615 "Canis lupus
familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074434 OMA:CLTHLKF
EMBL:AAEX03000337 EMBL:AAEX03000338 Ensembl:ENSCAFT00000035144
Uniprot:F1PX61
Length = 339
Score = 291 (107.5 bits), Expect = 6.8e-25, P = 6.8e-25
Identities = 61/126 (48%), Positives = 87/126 (69%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 84 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 143
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 144 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 203
Query: 364 NGTIRD 369
NGT RD
Sbjct: 204 NGTYRD 209
>UNIPROTKB|J9NVZ6 [details] [associations]
symbol:QKI "Protein quaking" species:9615 "Canis lupus
familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074434 EMBL:AAEX03000337
EMBL:AAEX03000338 Ensembl:ENSCAFT00000045317 Uniprot:J9NVZ6
Length = 286
Score = 291 (107.5 bits), Expect = 6.8e-25, P = 6.8e-25
Identities = 61/126 (48%), Positives = 87/126 (69%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 26 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 85
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 86 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 145
Query: 364 NGTIRD 369
NGT RD
Sbjct: 146 NGTYRD 151
>UNIPROTKB|F5GXS8 [details] [associations]
symbol:QKI "Protein quaking" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0003723
EMBL:AL356119 EMBL:AL031781 HGNC:HGNC:21100 ChiTaRS:QKI
IPI:IPI01009757 ProteinModelPortal:F5GXS8 SMR:F5GXS8
Ensembl:ENST00000537041 ArrayExpress:F5GXS8 Bgee:F5GXS8
Uniprot:F5GXS8
Length = 160
Score = 291 (107.5 bits), Expect = 6.8e-25, P = 6.8e-25
Identities = 61/126 (48%), Positives = 87/126 (69%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 26 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 85
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 86 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 145
Query: 364 NGTIRD 369
NGT RD
Sbjct: 146 NGTYRD 151
>UNIPROTKB|F5GYM3 [details] [associations]
symbol:QKI "Protein quaking" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0042759 "long-chain
fatty acid biosynthetic process" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0007286
GO:GO:0003723 GO:GO:0042692 GO:GO:0042759 GO:GO:0042552
GO:GO:0010628 GO:GO:0001570 EMBL:AL356119 EMBL:AL031781
HGNC:HGNC:21100 ChiTaRS:QKI IPI:IPI01009310
ProteinModelPortal:F5GYM3 SMR:F5GYM3 Ensembl:ENST00000544823
ArrayExpress:F5GYM3 Bgee:F5GYM3 Uniprot:F5GYM3
Length = 170
Score = 291 (107.5 bits), Expect = 6.8e-25, P = 6.8e-25
Identities = 61/126 (48%), Positives = 87/126 (69%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 26 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 85
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 86 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 145
Query: 364 NGTIRD 369
NGT RD
Sbjct: 146 NGTYRD 151
>UNIPROTKB|F1SBW4 [details] [associations]
symbol:QKI "Protein quaking" species:9823 "Sus scrofa"
[GO:0042759 "long-chain fatty acid biosynthetic process"
evidence=IEA] [GO:0042692 "muscle cell differentiation"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0010628
"positive regulation of gene expression" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0005886 GO:GO:0005634 GO:GO:0007286 GO:GO:0003723
GO:GO:0042692 GO:GO:0042759 GO:GO:0042552 GO:GO:0010628
GO:GO:0001570 GeneTree:ENSGT00550000074434 OMA:CLTHLKF
EMBL:AEMK01188940 EMBL:CU062434 EMBL:CU074317
Ensembl:ENSSSCT00000004455 Uniprot:F1SBW4
Length = 311
Score = 291 (107.5 bits), Expect = 6.8e-25, P = 6.8e-25
Identities = 61/126 (48%), Positives = 87/126 (69%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 56 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 115
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 116 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 175
Query: 364 NGTIRD 369
NGT RD
Sbjct: 176 NGTYRD 181
>ZFIN|ZDB-GENE-081028-54 [details] [associations]
symbol:qkib "QKI, KH domain containing, RNA binding
b" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
SMART:SM00322 ZFIN:ZDB-GENE-081028-54 GO:GO:0003723
GeneTree:ENSGT00550000074434 EMBL:CABZ01010714 EMBL:CABZ01010715
EMBL:CU019624 EMBL:CU467873 EMBL:CU915796 EMBL:FP325125
IPI:IPI00898626 Ensembl:ENSDART00000018737 Uniprot:F1QTT6
Length = 345
Score = 290 (107.1 bits), Expect = 8.7e-25, P = 8.7e-25
Identities = 61/126 (48%), Positives = 86/126 (68%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVNKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>TAIR|locus:2064097 [details] [associations]
symbol:AT2G38610 "AT2G38610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC005499 eggNOG:COG5176 KO:K14945 HSSP:Q32NN2
HOGENOM:HOG000238548 EMBL:AY042804 EMBL:AY064682 EMBL:AY065112
EMBL:BT000084 IPI:IPI00520364 PIR:B84807 RefSeq:NP_181395.1
RefSeq:NP_850296.1 UniGene:At.23456 ProteinModelPortal:Q9ZVI3
SMR:Q9ZVI3 IntAct:Q9ZVI3 PaxDb:Q9ZVI3 PRIDE:Q9ZVI3
EnsemblPlants:AT2G38610.1 EnsemblPlants:AT2G38610.2 GeneID:818443
KEGG:ath:AT2G38610 TAIR:At2g38610 InParanoid:Q9ZVI3 OMA:IMRVSSI
PhylomeDB:Q9ZVI3 ProtClustDB:CLSN2683215 Genevestigator:Q9ZVI3
Uniprot:Q9ZVI3
Length = 286
Score = 281 (104.0 bits), Expect = 8.3e-24, P = 8.3e-24
Identities = 76/209 (36%), Positives = 113/209 (54%)
Query: 171 LNSRLLEISRMLQS-GLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQE- 228
LN + +S M+ + G DR RSPSP N+ ++ L++ER
Sbjct: 57 LNQEMFRVSGMMSNQGFGDFDRLR-HRSPSPMAS-SNLMSNVSNTGLGGWNGLSQERLSG 114
Query: 229 IISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGA 288
+ A P+ Y ++ + L IP+ YP +NF+G ++GPRGN+ KR+E TG
Sbjct: 115 TPGMTMDWQGAPGSPSSYTVKRILR-LEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGC 173
Query: 289 KIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLL 342
++ IRGKGS+K+ + K +P NE LH+L+EA+ S L A ++E+LL
Sbjct: 174 RVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELL 233
Query: 343 QPVDEVLNEHKRQQLRELAALNGT-IRDE 370
+PVDE + KRQQLRELA LN +R+E
Sbjct: 234 KPVDESQDFIKRQQLRELALLNSNNLREE 262
>UNIPROTKB|Q75GR5 [details] [associations]
symbol:SPIN1 "KH domain-containing protein SPIN1"
species:39947 "Oryza sativa Japonica Group" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048577 "negative regulation of short-day
photoperiodism, flowering" evidence=IMP] [GO:0048579 "negative
regulation of long-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 GO:GO:0003723 GO:GO:0009908 GO:GO:0048577 HSSP:Q9BW01
eggNOG:COG5176 EMBL:CM000140 GO:GO:0048579 KO:K14945 OMA:IMRVSSI
EMBL:AC139172 EMBL:AK065405 RefSeq:NP_001051685.1 UniGene:Os.5675
ProteinModelPortal:Q75GR5 EnsemblPlants:LOC_Os03g60110.1
GeneID:4334557 KEGG:dosa:Os01t0886300-01 KEGG:dosa:Os03t0815700-01
KEGG:osa:4334557 Gramene:Q75GR5 ProtClustDB:CLSN2694450
Uniprot:Q75GR5
Length = 281
Score = 276 (102.2 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 58/123 (47%), Positives = 82/123 (66%)
Query: 254 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDP 313
+L +P+ YP +NF+G I+GPRGN+ KR+E TG ++ IRGKGS+K+ + K KP
Sbjct: 137 RLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGY 196
Query: 314 SENED-LHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 367
D LH+L+EAE S L A ++E+LL+PVDE + +KRQQLRELA LN T+
Sbjct: 197 EHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTL 256
Query: 368 RDE 370
R++
Sbjct: 257 RED 259
>FB|FBgn0264491 [details] [associations]
symbol:how "held out wings" species:7227 "Drosophila
melanogaster" [GO:0007525 "somatic muscle development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
[GO:0008016 "regulation of heart contraction" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0007521
"muscle cell fate determination" evidence=IDA] [GO:0007155 "cell
adhesion" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0007475 "apposition of dorsal and ventral
imaginal disc-derived wing surfaces" evidence=IMP] [GO:0003729
"mRNA binding" evidence=NAS;IDA] [GO:0007498 "mesoderm development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0008347 "glial cell migration" evidence=IMP] [GO:0008366 "axon
ensheathment" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0008078 "mesodermal cell migration" evidence=IMP] [GO:0045214
"sarcomere organization" evidence=IMP] [GO:0007284 "spermatogonial
cell division" evidence=IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AE014297
GO:GO:0005634 GO:GO:0007155 GO:GO:0008016 GO:GO:0007438
GO:GO:0016203 GO:GO:0003730 GO:GO:0045214 GO:GO:0030718
GO:GO:0008078 GO:GO:0008347 GO:GO:0007475 GO:GO:0007284
eggNOG:COG5176 GeneTree:ENSGT00550000074434 GO:GO:0007525
GO:GO:0000381 GO:GO:0008366 EMBL:U85651 EMBL:U72331 EMBL:AF003106
EMBL:AF003107 EMBL:U87150 EMBL:AY069862 RefSeq:NP_001027203.1
RefSeq:NP_001163683.1 RefSeq:NP_001163684.1 RefSeq:NP_524447.2
RefSeq:NP_732695.1 UniGene:Dm.20227 ProteinModelPortal:O01367
SMR:O01367 IntAct:O01367 MINT:MINT-307488 STRING:O01367
PaxDb:O01367 PRIDE:O01367 EnsemblMetazoa:FBtr0084177
EnsemblMetazoa:FBtr0301401 GeneID:42596 KEGG:dme:Dmel_CG10293
CTD:42596 FlyBase:FBgn0017397 InParanoid:O01367 KO:K14945
OMA:SLFQING OrthoDB:EOG4FJ6RD PhylomeDB:O01367 ChiTaRS:how
GenomeRNAi:42596 NextBio:829604 Bgee:O01367 GermOnline:CG10293
GO:GO:0007521 Uniprot:O01367
Length = 405
Score = 286 (105.7 bits), Expect = 4.0e-23, P = 4.0e-23
Identities = 68/170 (40%), Positives = 103/170 (60%)
Query: 234 IKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIR 293
+K+ P P + + +K+Y+P++E+P +NF+G I+GPRG T K++E+ETG KI++R
Sbjct: 120 VKKEPLTLPEPEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVR 179
Query: 294 GKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDE 347
GKGS+++ + + KP+ ++DLHVL+ E E+ L A A V+KLL P E
Sbjct: 180 GKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAE 239
Query: 348 VLNEHKRQQLRELAALNGTIRDE--EYCRLCGEPGHRQYACP-SR--TST 392
+E K++QL ELA +NGT RD + +C E R A SR TST
Sbjct: 240 GEDELKKRQLMELAIINGTYRDTTAKSVAVCDEEWRRLVAASDSRLLTST 289
>TAIR|locus:2077818 [details] [associations]
symbol:AT3G08620 "AT3G08620" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC012562 eggNOG:COG5176 KO:K14945 HSSP:Q32NN2
HOGENOM:HOG000238548 ProtClustDB:CLSN2683215 EMBL:AK117438
IPI:IPI00536963 RefSeq:NP_187474.2 UniGene:At.40250
ProteinModelPortal:Q8GYR4 SMR:Q8GYR4 PaxDb:Q8GYR4 PRIDE:Q8GYR4
EnsemblPlants:AT3G08620.1 GeneID:820009 KEGG:ath:AT3G08620
TAIR:At3g08620 InParanoid:Q9C9Z4 OMA:IFRITGM PhylomeDB:Q8GYR4
Genevestigator:Q8GYR4 Uniprot:Q8GYR4
Length = 283
Score = 274 (101.5 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 75/207 (36%), Positives = 111/207 (53%)
Query: 171 LNSRLLEISRMLQS-GLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKER-QE 228
LN + I+ M+ + G DR RSPSP N+ ++ L ER
Sbjct: 56 LNQEIFRITGMMPNQGFTDFDRLR-HRSPSPMAS-PNLMSNVSGGGLGGWNGLPPERIGG 113
Query: 229 IISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGA 288
++ A P+ Y P K +L +P+ YP +NF+G ++GPRGN+ KR+E TG
Sbjct: 114 PHGMAMEWQGAPASPSSY-PVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGC 172
Query: 289 KIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAE-----TQESLEGAAAMVEKLL 342
++ IRGKGS+K+ ++K KP NE LH+L+EA+ L A ++E+L+
Sbjct: 173 RVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELV 232
Query: 343 QPVDEVLNEHKRQQLRELAALNGTIRD 369
+PVDE + KRQQLRELA LN +R+
Sbjct: 233 KPVDESQDYIKRQQLRELALLNSNLRE 259
>ZFIN|ZDB-GENE-990415-230 [details] [associations]
symbol:qkia "QKI, KH domain containing, RNA binding
a" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008589 "regulation of smoothened signaling
pathway" evidence=IMP] [GO:0007519 "skeletal muscle tissue
development" evidence=IMP] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IGI] [GO:0017124 "SH3 domain binding"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
ZFIN:ZDB-GENE-990415-230 GO:GO:0003723 GeneTree:ENSGT00550000074434
GO:GO:0008589 GO:GO:0007519 GO:GO:0070935 EMBL:BX936408
EMBL:BX936463 IPI:IPI00993157 Ensembl:ENSDART00000125640
ArrayExpress:F1R190 Bgee:F1R190 Uniprot:F1R190
Length = 486
Score = 289 (106.8 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 67/161 (41%), Positives = 102/161 (63%)
Query: 220 ERLNKERQEI----ISQIIKRNPAFKPPADYRP-PKLQKKLYIPMKEYPGYNFIGLIIGP 274
E +N+ R+++ ++ ++ ++P + P P LQ+KL++P+KEYP YNF+G I+GP
Sbjct: 151 EEINRVRKDMYNDSVNGLVDKHP-LELPEPVGPIVHLQEKLFVPVKEYPDYNFVGRILGP 209
Query: 275 RGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAE-TQESLE 332
RG T K++E ETG KI++RG+ S+++ + +++ KP+ NEDLHVL+ E TQ E
Sbjct: 210 RGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDTQTRAE 269
Query: 333 ----GAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 270 IKMRRAVEEVKKLLVPAAEGEDNLKKMQLMELAILNGTYRD 310
>UNIPROTKB|G5EFF1 [details] [associations]
symbol:asd-2 "Protein ASD-2, isoform c" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0007411 GO:GO:0002119 GO:GO:0003727
GO:GO:0040017 GO:GO:0007413 GO:GO:0097157
GeneTree:ENSGT00550000074434 GO:GO:0000381 GO:GO:0043186
EMBL:FO080897 UniGene:Cel.16725 GeneID:188703 KEGG:cel:CELE_T21G5.5
CTD:188703 EMBL:EF630626 RefSeq:NP_001021627.1 SMR:G5EFF1
IntAct:G5EFF1 EnsemblMetazoa:T21G5.5c WormBase:T21G5.5c
NextBio:939786 Uniprot:G5EFF1
Length = 445
Score = 274 (101.5 bits), Expect = 3.5e-21, P = 3.5e-21
Identities = 63/160 (39%), Positives = 96/160 (60%)
Query: 215 EYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGP 274
E A E +NK R + + A P A+ +K+++P KE+P YNF+G I+GP
Sbjct: 94 ERLADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGP 153
Query: 275 RGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAETQES--- 330
RG T K++E+ETG KI++RG+GS+++ + ++ KP+ +E+LHVL++ E E+
Sbjct: 154 RGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAK 213
Query: 331 --LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIR 368
L A V KLL P E ++ KR+QL ELA +NGT R
Sbjct: 214 VKLMRAVEEVRKLLVPAPEGEDDLKRKQLMELAIINGTYR 253
>TAIR|locus:2161845 [details] [associations]
symbol:AT5G56140 "AT5G56140" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003723 EMBL:AB011476
eggNOG:COG5176 KO:K14945 HSSP:Q32NN2 EMBL:AY080852 EMBL:BT000873
IPI:IPI00544767 RefSeq:NP_200425.1 UniGene:At.29404
ProteinModelPortal:Q9FKT4 SMR:Q9FKT4 PRIDE:Q9FKT4
EnsemblPlants:AT5G56140.1 GeneID:835713 KEGG:ath:AT5G56140
TAIR:At5g56140 HOGENOM:HOG000238548 InParanoid:Q9FKT4 OMA:AKRTIRV
PhylomeDB:Q9FKT4 ProtClustDB:CLSN2916672 Genevestigator:Q9FKT4
Uniprot:Q9FKT4
Length = 315
Score = 256 (95.2 bits), Expect = 4.2e-21, P = 4.2e-21
Identities = 53/120 (44%), Positives = 79/120 (65%)
Query: 257 IPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE- 315
IP+ YP +NF+G ++GPRGN+ KR+E T +++IRG+GS+K+ ++ KP
Sbjct: 172 IPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHL 231
Query: 316 NEDLHVLVEAETQESLEGAAAM-----VEKLLQPVDEVLNEHKRQQLRELAALNGTIRDE 370
NE LH+LVEAE + A M ++ LL P++E + +K+QQLRELA LNGT+R+E
Sbjct: 232 NEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREE 291
>WB|WBGene00006423 [details] [associations]
symbol:asd-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0007411
"axon guidance" evidence=IMP] [GO:0007413 "axonal fasciculation"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0097157 "pre-mRNA intronic binding"
evidence=IPI] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0018991 GO:GO:0040010 GO:GO:0007411
GO:GO:0002119 GO:GO:0003727 GO:GO:0040017 GO:GO:0007413
GO:GO:0097157 GeneTree:ENSGT00550000074434 GO:GO:0000381
GO:GO:0043186 EMBL:FO080897 EMBL:FO080896 RefSeq:NP_001250340.1
UniGene:Cel.16725 ProteinModelPortal:D4YW53 SMR:D4YW53
EnsemblMetazoa:T21G5.5d GeneID:188703 KEGG:cel:CELE_T21G5.5
CTD:188703 WormBase:T21G5.5d OMA:IQQYAAG ArrayExpress:D4YW53
Uniprot:D4YW53
Length = 486
Score = 274 (101.5 bits), Expect = 5.4e-21, P = 5.4e-21
Identities = 63/160 (39%), Positives = 96/160 (60%)
Query: 215 EYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGP 274
E A E +NK R + + A P A+ +K+++P KE+P YNF+G I+GP
Sbjct: 124 ERLADEEINKVRVVLFQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEHPDYNFVGRILGP 183
Query: 275 RGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAETQES--- 330
RG T K++E+ETG KI++RG+GS+++ + ++ KP+ +E+LHVL++ E E+
Sbjct: 184 RGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNRGKPNWEHLSEELHVLIQCEDTENRAK 243
Query: 331 --LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIR 368
L A V KLL P E ++ KR+QL ELA +NGT R
Sbjct: 244 VKLMRAVEEVRKLLVPAPEGEDDLKRKQLMELAIINGTYR 283
>WB|WBGene00001595 [details] [associations]
symbol:gld-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0042127 "regulation of
cell proliferation" evidence=IMP] [GO:0040020 "regulation of
meiosis" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IDA] [GO:0017148 "negative regulation of
translation" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005829
GO:GO:0009792 GO:GO:0007126 GO:GO:0006898 GO:GO:0030154
GO:GO:0017148 GO:GO:0003727 GO:GO:0048477 GO:GO:0051729
GO:GO:0042127 GO:GO:0048027 GO:GO:0003730 GO:GO:0040027
GO:GO:0040020 eggNOG:COG5176 GeneTree:ENSGT00550000074434
EMBL:Z81130 EMBL:U20535 PIR:T25193 RefSeq:NP_492143.1 PDB:3K6T
PDB:3KBL PDBsum:3K6T PDBsum:3KBL ProteinModelPortal:Q17339
SMR:Q17339 DIP:DIP-24870N IntAct:Q17339 MINT:MINT-1054588
STRING:Q17339 PaxDb:Q17339 EnsemblMetazoa:T23G11.3.1
EnsemblMetazoa:T23G11.3.2 GeneID:172532 KEGG:cel:CELE_T23G11.3
UCSC:T23G11.3 CTD:172532 WormBase:T23G11.3 HOGENOM:HOG000015966
InParanoid:Q17339 OMA:TENRVHL BindingDB:Q17339 ChEMBL:CHEMBL1293302
EvolutionaryTrace:Q17339 NextBio:875927 GermOnline:T23G11.3
Uniprot:Q17339
Length = 463
Score = 267 (99.0 bits), Expect = 2.8e-20, P = 2.8e-20
Identities = 57/124 (45%), Positives = 81/124 (65%)
Query: 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLK 310
+ +K+Y+P EYP YNF+G I+GPRG T K++E++TG KI++RGKGS+++ + K
Sbjct: 205 ITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGK 264
Query: 311 PDPSENED-LHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALN 364
+ ED LHVLV+ E E+ L+ A V+KLL P E +E KR+QL ELA +N
Sbjct: 265 ANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIIN 324
Query: 365 GTIR 368
GT R
Sbjct: 325 GTYR 328
>UNIPROTKB|F1P522 [details] [associations]
symbol:QKI "Protein quaking" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074434 EMBL:AADN02035543 EMBL:AADN02035544
IPI:IPI01017166 Ensembl:ENSGALT00000031822 ArrayExpress:F1P522
Uniprot:F1P522
Length = 186
Score = 239 (89.2 bits), Expect = 2.9e-19, P = 2.9e-19
Identities = 57/147 (38%), Positives = 91/147 (61%)
Query: 208 GIRINTREYRARERLNKERQEIISQII----KRNPAFKPPADYRPPKLQKKLYIPMKEYP 263
GI N E E +++ R+++ + + ++ A P A +LQ+KLY+P+KEYP
Sbjct: 36 GI-FNHLERLLDEEISRVRKDMYNDTLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYP 94
Query: 264 GYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVL 322
+NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++ KP+ NEDLHVL
Sbjct: 95 DFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVL 154
Query: 323 VEAETQES-----LEGAAAMVEKLLQP 344
+ E ++ L+ A V+KLL P
Sbjct: 155 ITVEDAQNRAEIKLKRAVEEVKKLLIP 181
>UNIPROTKB|F5H8C8 [details] [associations]
symbol:QKI "Protein quaking" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0042552 "myelination" evidence=IEA] [GO:0042692
"muscle cell differentiation" evidence=IEA] [GO:0042759 "long-chain
fatty acid biosynthetic process" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 GO:GO:0007286
GO:GO:0003723 GO:GO:0042692 GO:GO:0042759 GO:GO:0042552
GO:GO:0010628 GO:GO:0001570 EMBL:AL356119 EMBL:AL031781
HGNC:HGNC:21100 ChiTaRS:QKI IPI:IPI01010211
ProteinModelPortal:F5H8C8 SMR:F5H8C8 Ensembl:ENST00000544436
ArrayExpress:F5H8C8 Bgee:F5H8C8 Uniprot:F5H8C8
Length = 100
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 40/75 (53%), Positives = 60/75 (80%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 26 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 85
Query: 310 KPDPSE-NEDLHVLV 323
KP+ NEDLHVL+
Sbjct: 86 KPNWEHLNEDLHVLI 100
>UNIPROTKB|F1RZV6 [details] [associations]
symbol:KHDRBS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042169 "SH2 domain binding" evidence=IEA]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0008266 "poly(U)
RNA binding" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0008266
GeneTree:ENSGT00550000074434 GO:GO:0008143 OMA:PPIARGV
EMBL:CT797468 EMBL:CT961061 EMBL:CU407231 EMBL:CU570917
EMBL:FP565898 Ensembl:ENSSSCT00000001662 Uniprot:F1RZV6
Length = 277
Score = 217 (81.4 bits), Expect = 6.9e-17, P = 6.9e-17
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>ZFIN|ZDB-GENE-061013-497 [details] [associations]
symbol:khdrbs2 "KH domain containing, RNA binding,
signal transduction associated 2" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-061013-497
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0003723
eggNOG:COG5176 GeneTree:ENSGT00550000074434 HOGENOM:HOG000230771
HOVERGEN:HBG079164 EMBL:BC124701 IPI:IPI00802483
RefSeq:NP_001070758.1 UniGene:Dr.92774 ProteinModelPortal:Q08BJ2
PRIDE:Q08BJ2 Ensembl:ENSDART00000101134 GeneID:768147
KEGG:dre:768147 CTD:202559 InParanoid:Q08BJ2 OMA:PPIARGV
OrthoDB:EOG418BP2 NextBio:20918466 Bgee:Q08BJ2 Uniprot:Q08BJ2
Length = 346
Score = 221 (82.9 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+++YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N DLHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSN-DLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
Score = 44 (20.5 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 19/79 (24%), Positives = 25/79 (31%)
Query: 714 GSSMPPMPPNVQPAYATAPLGXXXXXXXXXXXXXXXXXXXXDHSQNLGNVPWATNPPVQP 773
GS+ PP PP A AP G ++ P P +Q
Sbjct: 207 GSAAPPAPPG---RGAAAPRGTVSSRTSVPTPARGVSA---PRTRGTAGTPGYRAPSLQA 260
Query: 774 PVSSAEKSNY--GADAEYE 790
+ E Y G D EY+
Sbjct: 261 THKTYEDYGYDDGYDGEYD 279
>UNIPROTKB|E5RJZ9 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
HGNC:HGNC:18117 EMBL:AC040914 EMBL:AC104371 IPI:IPI01010991
ProteinModelPortal:E5RJZ9 SMR:E5RJZ9 Ensembl:ENST00000524199
ArrayExpress:E5RJZ9 Bgee:E5RJZ9 Uniprot:E5RJZ9
Length = 265
Score = 206 (77.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +K+ IP+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++
Sbjct: 27 KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRK 86
Query: 306 KRDLKPDPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N+DLHVL+E AE + A ++K L P + +E ++ QL+EL
Sbjct: 87 SGEAKYFHL-NDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQEL 143
Query: 361 AALNGTIRDEEYCRLCGEPGHRQYACPSRTST 392
LNG + + + G+P R P+ T
Sbjct: 144 TYLNGGSENADVPVVRGKPTLRTRGVPAPAIT 175
>UNIPROTKB|I3LAN7 [details] [associations]
symbol:LOC100625959 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074434 Ensembl:ENSSSCT00000023135 OMA:PEMNDEI
Uniprot:I3LAN7
Length = 151
Score = 205 (77.2 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 54/148 (36%), Positives = 86/148 (58%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +K+ IP+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++
Sbjct: 2 KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRK 61
Query: 306 KRDLKPDPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N+DLHVL+E AE + A ++K L P + +E ++ QL+EL
Sbjct: 62 SGEAKYFHL-NDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQEL 118
Query: 361 AALNGTIRDEEYCRLCGEPGHRQYACPS 388
LNG + + + G+P R P+
Sbjct: 119 TYLNGGSENADVPVVRGKPTLRTRGVPT 146
>UNIPROTKB|E1BVW8 [details] [associations]
symbol:KHDRBS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0042169 "SH2 domain binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0008266
GeneTree:ENSGT00550000074434 GO:GO:0008143 CTD:202559 OMA:PPIARGV
EMBL:AADN02002672 EMBL:AADN02002673 EMBL:AADN02002674
EMBL:AADN02002675 EMBL:AADN02002676 EMBL:AADN02002677
EMBL:AADN02002678 EMBL:AADN02002679 EMBL:AADN02002680
IPI:IPI00593041 RefSeq:XP_426201.2 UniGene:Gga.14902
Ensembl:ENSGALT00000026242 GeneID:428643 KEGG:gga:428643
NextBio:20829580 Uniprot:E1BVW8
Length = 348
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>UNIPROTKB|E1BP48 [details] [associations]
symbol:KHDRBS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0042169 "SH2 domain binding" evidence=IEA]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0008266 "poly(U)
RNA binding" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0008266
GeneTree:ENSGT00550000074434 GO:GO:0008143 CTD:202559 OMA:PPIARGV
EMBL:DAAA02054729 EMBL:DAAA02054730 EMBL:DAAA02054731
EMBL:DAAA02054732 EMBL:DAAA02054733 EMBL:DAAA02054734
EMBL:DAAA02054735 EMBL:DAAA02054736 EMBL:DAAA02054737
EMBL:DAAA02054738 EMBL:DAAA02054739 EMBL:DAAA02054740
EMBL:DAAA02054741 EMBL:DAAA02054742 EMBL:DAAA02054743
EMBL:DAAA02054744 EMBL:DAAA02054745 EMBL:DAAA02054746
IPI:IPI00913818 RefSeq:XP_002697212.1 Ensembl:ENSBTAT00000061105
GeneID:789972 KEGG:bta:789972 NextBio:20929992 Uniprot:E1BP48
Length = 348
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>UNIPROTKB|E2QWN2 [details] [associations]
symbol:KHDRBS2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0042169 "SH2 domain binding"
evidence=IEA] [GO:0017124 "SH3 domain binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0008266 GeneTree:ENSGT00550000074434 GO:GO:0008143 CTD:202559
OMA:PPIARGV EMBL:AAEX03008417 EMBL:AAEX03008418 EMBL:AAEX03008419
RefSeq:XP_538980.2 ProteinModelPortal:E2QWN2
Ensembl:ENSCAFT00000003891 GeneID:481859 KEGG:cfa:481859
NextBio:20856585 Uniprot:E2QWN2
Length = 349
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>UNIPROTKB|Q5VWX1 [details] [associations]
symbol:KHDRBS2 "KH domain-containing, RNA-binding, signal
transduction-associated protein 2" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0017124 "SH3
domain binding" evidence=IEA] [GO:0042169 "SH2 domain binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0008266 GO:GO:0006355 GO:GO:0006351
eggNOG:COG5176 GO:GO:0008143 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:202559 OMA:PPIARGV OrthoDB:EOG418BP2
EMBL:AY077838 EMBL:AK292043 EMBL:AL360220 EMBL:AL049544
EMBL:AL138882 EMBL:AL355347 EMBL:AL391644 EMBL:Z93021 EMBL:CH471143
EMBL:BC034043 IPI:IPI00166708 RefSeq:NP_689901.2 UniGene:Hs.519794
HSSP:Q32NN2 ProteinModelPortal:Q5VWX1 SMR:Q5VWX1 IntAct:Q5VWX1
MINT:MINT-1449914 STRING:Q5VWX1 PhosphoSite:Q5VWX1 DMDM:74762274
PaxDb:Q5VWX1 PRIDE:Q5VWX1 DNASU:202559 Ensembl:ENST00000281156
GeneID:202559 KEGG:hsa:202559 UCSC:uc003peg.2 GeneCards:GC06M062447
H-InvDB:HIX0005989 HGNC:HGNC:18114 HPA:HPA029392 MIM:610487
neXtProt:NX_Q5VWX1 PharmGKB:PA30093 InParanoid:Q5VWX1
PhylomeDB:Q5VWX1 GenomeRNAi:202559 NextBio:90301
ArrayExpress:Q5VWX1 Bgee:Q5VWX1 CleanEx:HS_KHDRBS2
Genevestigator:Q5VWX1 Uniprot:Q5VWX1
Length = 349
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>MGI|MGI:2159649 [details] [associations]
symbol:Khdrbs2 "KH domain containing, RNA binding, signal
transduction associated 2" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005070 "SH3/SH2 adaptor activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0017124 "SH3 domain
binding" evidence=IDA] [GO:0042169 "SH2 domain binding"
evidence=IDA] [GO:0046982 "protein heterodimerization activity"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:2159649 GO:GO:0005634
GO:GO:0008266 GO:GO:0006355 GO:GO:0005070 GO:GO:0017124
GO:GO:0006351 GO:GO:0042169 GO:GO:0046982 eggNOG:COG5176
GeneTree:ENSGT00550000074434 GO:GO:0008143 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:202559 OMA:PPIARGV OrthoDB:EOG418BP2
HSSP:Q32NN2 EMBL:AF098796 EMBL:BC066814 EMBL:BC132117 EMBL:BC132119
IPI:IPI00322691 IPI:IPI00874354 RefSeq:NP_573498.1
UniGene:Mm.336594 ProteinModelPortal:Q9WU01 SMR:Q9WU01
STRING:Q9WU01 PhosphoSite:Q9WU01 PaxDb:Q9WU01 PRIDE:Q9WU01
Ensembl:ENSMUST00000027226 GeneID:170771 KEGG:mmu:170771
UCSC:uc007ano.1 UCSC:uc007anp.1 InParanoid:Q9WU01 ChiTaRS:KHDRBS2
NextBio:370395 Bgee:Q9WU01 Genevestigator:Q9WU01 Uniprot:Q9WU01
Length = 349
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>RGD|621738 [details] [associations]
symbol:Khdrbs2 "KH domain containing, RNA binding, signal
transduction associated 2" species:10116 "Rattus norvegicus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0017124 "SH3 domain binding"
evidence=IEA;ISO] [GO:0042169 "SH2 domain binding"
evidence=IEA;ISO] [GO:0046982 "protein heterodimerization activity"
evidence=IEA;ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:621738 GO:GO:0005634
GO:GO:0008266 GO:GO:0006355 GO:GO:0006351 eggNOG:COG5176
GeneTree:ENSGT00550000074434 GO:GO:0008143 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:202559 OMA:PPIARGV OrthoDB:EOG418BP2
HSSP:Q32NN2 EMBL:AF305618 IPI:IPI00200486 RefSeq:NP_579852.1
UniGene:Rn.154423 ProteinModelPortal:Q920F3 STRING:Q920F3
PhosphoSite:Q920F3 PRIDE:Q920F3 Ensembl:ENSRNOT00000016578
GeneID:170843 KEGG:rno:170843 UCSC:RGD:621738 InParanoid:Q920F3
NextBio:621265 ArrayExpress:Q920F3 Genevestigator:Q920F3
Uniprot:Q920F3
Length = 349
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 51/126 (40%), Positives = 80/126 (63%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>UNIPROTKB|E5RG12 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:18117 EMBL:AC040914
EMBL:AC104371 IPI:IPI00980277 ProteinModelPortal:E5RG12 SMR:E5RG12
Ensembl:ENST00000517394 ArrayExpress:E5RG12 Bgee:E5RG12
Uniprot:E5RG12
Length = 161
Score = 198 (74.8 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +K+ IP+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++
Sbjct: 28 KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRK 87
Query: 306 KRDLKPDPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N+DLHVL+E AE + A ++K L P + +E ++ QL+EL
Sbjct: 88 SGEAKYFHL-NDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQEL 144
Query: 361 AALNG 365
LNG
Sbjct: 145 TYLNG 149
>UNIPROTKB|F1NKE9 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR004087 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 GeneTree:ENSGT00550000074434
OMA:ETYGEYE EMBL:AADN02037546 EMBL:AADN02037547 IPI:IPI00813297
Ensembl:ENSGALT00000026120 Uniprot:F1NKE9
Length = 327
Score = 212 (79.7 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 62/186 (33%), Positives = 100/186 (53%)
Query: 211 INTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGL 270
+NT + ++ KE ++ I +I +N KL +K+ IP+K++P +NF+G
Sbjct: 9 LNTEIEKYQKGEGKEEEKYIDVVINKNM-----------KLGQKVLIPVKQFPKFNFVGK 57
Query: 271 IIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQKRDLKPDPSENEDLHVLVE-- 324
++GPRGN+ KR++ ET K+ I GKGS+ KE L++ + K N+DLHVL+E
Sbjct: 58 LLGPRGNSLKRLQEETLTKMSILGKGSMRDKTKEEELRKSGEAKYFHL-NDDLHVLIEVF 116
Query: 325 ---AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGH 381
AE + A ++K L P + +E ++ QL+EL LNG + E + G+P
Sbjct: 117 APPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNGGSENAEVPVVRGKPSI 174
Query: 382 RQYACP 387
R P
Sbjct: 175 RARGVP 180
>UNIPROTKB|E1C4N4 [details] [associations]
symbol:KHDRBS1 "KH domain-containing, RNA-binding, signal
transduction-associated protein 1" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005070 "SH3/SH2
adaptor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007166 "cell surface receptor signaling pathway" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046831 "regulation of RNA export from nucleus" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0045892 GO:GO:0016020
GO:GO:0003723 GO:GO:0007166 GeneTree:ENSGT00550000074434
GO:GO:0046831 EMBL:AADN02043780 EMBL:AADN02043781 EMBL:AADN02043782
IPI:IPI00822118 Ensembl:ENSGALT00000040759 Uniprot:E1C4N4
Length = 355
Score = 213 (80.0 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 60 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 119
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 120 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 177
Query: 362 ALNG 365
LNG
Sbjct: 178 YLNG 181
>WB|WBGene00019509 [details] [associations]
symbol:K07H8.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0040007 GO:GO:0002119 GO:GO:0000003 GO:GO:0003723 HSSP:Q9BW01
eggNOG:COG5176 GeneTree:ENSGT00550000074434 EMBL:FO081300
PIR:T33021 RefSeq:NP_501390.1 ProteinModelPortal:O45180 SMR:O45180
STRING:O45180 EnsemblMetazoa:K07H8.9 GeneID:177620
KEGG:cel:CELE_K07H8.9 UCSC:K07H8.9 CTD:177620 WormBase:K07H8.9
HOGENOM:HOG000016492 InParanoid:O45180 OMA:ISMADIG NextBio:897640
Uniprot:O45180
Length = 254
Score = 195 (73.7 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 53/127 (41%), Positives = 72/127 (56%)
Query: 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKE-GRLQQKRDL 309
L + + IP++ YP YNFIG IIGPRG T K++E++TG +I+IRG S K G K
Sbjct: 121 LTESIRIPVETYPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHSNKMYGNALHKTH- 179
Query: 310 KPDPSENE---DLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
D S++ L V+VE E + A V+ LL P + +E KR+QL ELA
Sbjct: 180 -GDGSQDAIDLPLRVIVETSGPRREATARITAALETVQVLLVPPPDGRDELKRRQLVELA 238
Query: 362 ALNGTIR 368
+NGT R
Sbjct: 239 IMNGTYR 245
>UNIPROTKB|F1RRV9 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
SMART:SM00322 GO:GO:0003723 OMA:ETYGEYE EMBL:CU151851
Ensembl:ENSSSCT00000006524 Uniprot:F1RRV9
Length = 300
Score = 206 (77.6 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +K+ IP+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++
Sbjct: 9 KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRK 68
Query: 306 KRDLKPDPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N+DLHVL+E AE + A ++K L P + +E ++ QL+EL
Sbjct: 69 SGEAKYFHL-NDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQEL 125
Query: 361 AALNGTIRDEEYCRLCGEPGHRQYACPSRTST 392
LNG + + + G+P R P+ T
Sbjct: 126 TYLNGGSENADVPVVRGKPTLRTRGVPTPAIT 157
>UNIPROTKB|J9NRH2 [details] [associations]
symbol:KHDRBS1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074434
EMBL:AAEX03001657 EMBL:AAEX03001658 Ensembl:ENSCAFT00000043112
Uniprot:J9NRH2
Length = 423
Score = 213 (80.0 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 135 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 194
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 195 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 252
Query: 362 ALNG 365
LNG
Sbjct: 253 YLNG 256
>UNIPROTKB|F1NLF2 [details] [associations]
symbol:KHDRBS1 "KH domain-containing, RNA-binding, signal
transduction-associated protein 1" species:9031 "Gallus gallus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005070 "SH3/SH2
adaptor activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007166 "cell surface receptor signaling pathway" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0046831 "regulation of RNA export from nucleus" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0045892 GO:GO:0016020
GO:GO:0003723 GO:GO:0007166 GeneTree:ENSGT00550000074434
IPI:IPI00603250 GO:GO:0046831 OMA:FMELSYL EMBL:AADN02043780
EMBL:AADN02043781 EMBL:AADN02043782 Ensembl:ENSGALT00000005175
Uniprot:F1NLF2
Length = 433
Score = 213 (80.0 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 138 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 197
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 198 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 255
Query: 362 ALNG 365
LNG
Sbjct: 256 YLNG 259
>UNIPROTKB|Q8UUW7 [details] [associations]
symbol:KHDRBS1 "KH domain-containing, RNA-binding, signal
transduction-associated protein 1" species:9031 "Gallus gallus"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0000086 "G2/M
transition of mitotic cell cycle" evidence=IDA] [GO:0007166 "cell
surface receptor signaling pathway" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0016020 "membrane" evidence=ISS] [GO:0045948
"positive regulation of translational initiation" evidence=ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0046831 "regulation of RNA export from nucleus"
evidence=ISS] [GO:0005070 "SH3/SH2 adaptor activity" evidence=ISS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0045892 GO:GO:0000086
GO:GO:0016020 GO:GO:0005070 GO:GO:0006351 GO:GO:0003723
GO:GO:0007166 eggNOG:COG5176 EMBL:AY057837 IPI:IPI00603250
RefSeq:NP_989561.1 UniGene:Gga.3874 ProteinModelPortal:Q8UUW7
SMR:Q8UUW7 STRING:Q8UUW7 PRIDE:Q8UUW7 GeneID:374071 KEGG:gga:374071
CTD:10657 HOGENOM:HOG000230771 HOVERGEN:HBG079164 InParanoid:Q8UUW7
KO:K13198 NextBio:20813592 GO:GO:0046831 Uniprot:Q8UUW7
Length = 433
Score = 213 (80.0 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 138 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 197
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 198 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 255
Query: 362 ALNG 365
LNG
Sbjct: 256 YLNG 259
>UNIPROTKB|Q29RQ2 [details] [associations]
symbol:KHDRBS1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046831 "regulation of RNA export from nucleus"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0007166 "cell surface receptor signaling pathway" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005070 "SH3/SH2 adaptor
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0045892 GO:GO:0016020
GO:GO:0003723 GO:GO:0007166 eggNOG:COG5176
GeneTree:ENSGT00550000074434 CTD:10657 HOGENOM:HOG000230771
HOVERGEN:HBG079164 KO:K13198 GO:GO:0046831 OMA:FMELSYL
OrthoDB:EOG4JHCGB EMBL:DAAA02006245 EMBL:BC114075 IPI:IPI00691512
RefSeq:NP_001039907.1 UniGene:Bt.23430 SMR:Q29RQ2 STRING:Q29RQ2
Ensembl:ENSBTAT00000016581 GeneID:538775 KEGG:bta:538775
InParanoid:Q29RQ2 NextBio:20877572 Uniprot:Q29RQ2
Length = 443
Score = 213 (80.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNG 365
LNG
Sbjct: 273 YLNG 276
>UNIPROTKB|Q07666 [details] [associations]
symbol:KHDRBS1 "KH domain-containing, RNA-binding, signal
transduction-associated protein 1" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0017124 "SH3 domain
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0070618 "Grb2-Sos complex" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS]
[GO:0046831 "regulation of RNA export from nucleus" evidence=ISS]
[GO:0016020 "membrane" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0007166 "cell surface receptor signaling pathway"
evidence=IDA] [GO:0005070 "SH3/SH2 adaptor activity" evidence=IPI]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=IDA] [GO:0045948 "positive
regulation of translational initiation" evidence=IDA] [GO:0031647
"regulation of protein stability" evidence=IDA] [GO:0007050 "cell
cycle arrest" evidence=TAS] [GO:0003677 "DNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0007165 "signal
transduction" evidence=TAS] [GO:0008283 "cell proliferation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0045892
GO:GO:0000086 GO:GO:0016020 GO:GO:0003677 EMBL:CH471059
GO:GO:0008283 GO:GO:0006397 GO:GO:0007050 GO:GO:0006351
GO:GO:0003723 GO:GO:0007166 PDB:3QHE PDBsum:3QHE eggNOG:COG5176
EMBL:AL445248 CTD:10657 HOGENOM:HOG000230771 HOVERGEN:HBG079164
KO:K13198 GO:GO:0046831 EMBL:M88108 EMBL:U78971 EMBL:AK091346
EMBL:AL139249 EMBL:BC000717 EMBL:BC010132 EMBL:BC019109
IPI:IPI00008575 IPI:IPI00082310 IPI:IPI00385834 PIR:A38219
RefSeq:NP_001258807.1 RefSeq:NP_006550.1 UniGene:Hs.445893 PDB:2XA6
PDBsum:2XA6 ProteinModelPortal:Q07666 SMR:Q07666 DIP:DIP-29007N
IntAct:Q07666 MINT:MINT-102826 STRING:Q07666 PhosphoSite:Q07666
DMDM:62511098 PaxDb:Q07666 PRIDE:Q07666 DNASU:10657
Ensembl:ENST00000327300 Ensembl:ENST00000492989 GeneID:10657
KEGG:hsa:10657 UCSC:uc001bua.1 UCSC:uc001bub.3
GeneCards:GC01P032479 HGNC:HGNC:18116 HPA:CAB005355 MIM:602489
neXtProt:NX_Q07666 PharmGKB:PA30092 InParanoid:Q07666 OMA:FMELSYL
OrthoDB:EOG4JHCGB PhylomeDB:Q07666 BindingDB:Q07666
ChEMBL:CHEMBL1795190 ChiTaRS:KHDRBS1 EvolutionaryTrace:Q07666
GenomeRNAi:10657 NextBio:40517 PMAP-CutDB:Q07666
ArrayExpress:Q07666 Bgee:Q07666 CleanEx:HS_KHDRBS1
Genevestigator:Q07666 GermOnline:ENSG00000121774 Uniprot:Q07666
Length = 443
Score = 213 (80.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNG 365
LNG
Sbjct: 273 YLNG 276
>UNIPROTKB|I3LP11 [details] [associations]
symbol:LOC100739434 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0046831 "regulation of RNA export from nucleus"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0007166 "cell surface receptor signaling pathway" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005070 "SH3/SH2 adaptor
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074434
EMBL:FP325355 EMBL:FP340586 Ensembl:ENSSSCT00000031351 OMA:REEPESY
Uniprot:I3LP11
Length = 443
Score = 213 (80.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNG 365
LNG
Sbjct: 273 YLNG 276
>MGI|MGI:893579 [details] [associations]
symbol:Khdrbs1 "KH domain containing, RNA binding, signal
transduction associated 1" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005070 "SH3/SH2 adaptor
activity" evidence=ISO;IPI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007166 "cell surface receptor signaling
pathway" evidence=ISO;IDA] [GO:0016020 "membrane" evidence=ISO]
[GO:0017124 "SH3 domain binding" evidence=ISO] [GO:0032403 "protein
complex binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045948 "positive
regulation of translational initiation" evidence=ISO] [GO:0046831
"regulation of RNA export from nucleus" evidence=IDA] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISO]
[GO:0070618 "Grb2-Sos complex" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:893579 GO:GO:0005634 GO:GO:0045892 GO:GO:0016020
GO:GO:0006351 GO:GO:0003723 GO:GO:0007049 GO:GO:0007166
eggNOG:COG5176 GeneTree:ENSGT00550000074434 CTD:10657
HOVERGEN:HBG079164 KO:K13198 GO:GO:0046831 OMA:FMELSYL
OrthoDB:EOG4JHCGB ChiTaRS:KHDRBS1 EMBL:U17961 EMBL:U17046
EMBL:AK050520 EMBL:AK152084 EMBL:AL669834 EMBL:CU210913
EMBL:BC002051 IPI:IPI00458765 PIR:I49140 PIR:S43974
RefSeq:NP_035447.3 UniGene:Mm.489797 UniGene:Mm.8256
ProteinModelPortal:Q60749 SMR:Q60749 DIP:DIP-2861N IntAct:Q60749
STRING:Q60749 PhosphoSite:Q60749 PaxDb:Q60749 PRIDE:Q60749
Ensembl:ENSMUST00000066257 Ensembl:ENSMUST00000129342 GeneID:20218
KEGG:mmu:20218 UCSC:uc008uyd.1 InParanoid:B2KG38 NextBio:297827
Bgee:Q60749 Genevestigator:Q60749 GermOnline:ENSMUSG00000028790
Uniprot:Q60749
Length = 443
Score = 213 (80.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNG 365
LNG
Sbjct: 273 YLNG 276
>RGD|621459 [details] [associations]
symbol:Khdrbs1 "KH domain containing, RNA binding, signal
transduction associated 1" species:10116 "Rattus norvegicus"
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISO;ISS;TAS] [GO:0005070
"SH3/SH2 adaptor activity" evidence=ISO;IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007166 "cell surface receptor
signaling pathway" evidence=ISO;IDA] [GO:0009966 "regulation of
signal transduction" evidence=NAS] [GO:0016020 "membrane"
evidence=ISO;ISS] [GO:0017124 "SH3 domain binding" evidence=IDA]
[GO:0032403 "protein complex binding" evidence=IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0045948 "positive regulation of translational
initiation" evidence=ISO;ISS] [GO:0046831 "regulation of RNA export
from nucleus" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISO;ISS] [GO:0070618 "Grb2-Sos
complex" evidence=IDA] [GO:0031647 "regulation of protein
stability" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:621459 GO:GO:0005634
GO:GO:0005737 GO:GO:0045892 GO:GO:0000086 GO:GO:0009966
GO:GO:0032403 GO:GO:0017124 GO:GO:0006351 GO:GO:0003723
GO:GO:0007166 eggNOG:COG5176 CTD:10657 HOGENOM:HOG000230771
HOVERGEN:HBG079164 KO:K13198 GO:GO:0046831 OrthoDB:EOG4JHCGB
EMBL:AF305619 EMBL:AF393783 EMBL:BC061987 IPI:IPI00205097
RefSeq:NP_569089.1 UniGene:Rn.92906 ProteinModelPortal:Q91V33
SMR:Q91V33 IntAct:Q91V33 STRING:Q91V33 PhosphoSite:Q91V33
PRIDE:Q91V33 GeneID:117268 KEGG:rno:117268 NextBio:620165
ArrayExpress:Q91V33 Genevestigator:Q91V33 GO:GO:0070618
Uniprot:Q91V33
Length = 443
Score = 213 (80.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNG 365
LNG
Sbjct: 273 YLNG 276
>UNIPROTKB|F1PLD5 [details] [associations]
symbol:KHDRBS1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0046831 "regulation of RNA export from
nucleus" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007166 "cell surface receptor signaling pathway"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005070
"SH3/SH2 adaptor activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0045892
GO:GO:0016020 GO:GO:0003723 GO:GO:0007166
GeneTree:ENSGT00550000074434 GO:GO:0046831 OMA:FMELSYL
EMBL:AAEX03001657 EMBL:AAEX03001658 Ensembl:ENSCAFT00000017162
Uniprot:F1PLD5
Length = 444
Score = 213 (80.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 48/124 (38%), Positives = 78/124 (62%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNG 365
LNG
Sbjct: 273 YLNG 276
>UNIPROTKB|A4FV24 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 eggNOG:COG5176
GeneTree:ENSGT00550000074434 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:10656 KO:K14942 OMA:ETYGEYE
OrthoDB:EOG4DBTFN EMBL:DAAA02037568 EMBL:DAAA02037569 EMBL:BC123651
IPI:IPI00717873 RefSeq:NP_001076981.1 UniGene:Bt.50935
STRING:A4FV24 Ensembl:ENSBTAT00000002827 GeneID:615095
KEGG:bta:615095 InParanoid:A4FV24 NextBio:20899441 Uniprot:A4FV24
Length = 346
Score = 206 (77.6 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +K+ IP+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++
Sbjct: 55 KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRK 114
Query: 306 KRDLKPDPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N+DLHVL+E AE + A ++K L P + +E ++ QL+EL
Sbjct: 115 SGEAKYFHL-NDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQEL 171
Query: 361 AALNGTIRDEEYCRLCGEPGHRQYACPSRTST 392
LNG + + + G+P R P+ T
Sbjct: 172 TYLNGGSENADVPVVRGKPTLRTRGVPTPAIT 203
>UNIPROTKB|E2RLG8 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074434 CTD:10656 KO:K14942 OMA:ETYGEYE
EMBL:AAEX03008846 RefSeq:XP_848348.1 Ensembl:ENSCAFT00000001808
GeneID:475106 KEGG:cfa:475106 Uniprot:E2RLG8
Length = 346
Score = 206 (77.6 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +K+ IP+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++
Sbjct: 55 KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRK 114
Query: 306 KRDLKPDPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N+DLHVL+E AE + A ++K L P + +E ++ QL+EL
Sbjct: 115 SGEAKYFHL-NDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQEL 171
Query: 361 AALNGTIRDEEYCRLCGEPGHRQYACPSRTST 392
LNG + + + G+P R P+ T
Sbjct: 172 TYLNGGSENADVPVVRGKPTLRTRGVPTPAIT 203
>UNIPROTKB|O75525 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0017124 "SH3 domain binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR004087 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0006355 GO:GO:0003727
GO:GO:0006397 GO:GO:0007283 GO:GO:0006351 GO:GO:0003723
eggNOG:COG5176 GO:GO:0033120 HOGENOM:HOG000230771
HOVERGEN:HBG079164 HPA:HPA029392 EMBL:AF051321 EMBL:AF051322
EMBL:AF069681 EMBL:BC032606 EMBL:BC068536 IPI:IPI00008570
IPI:IPI00744983 RefSeq:NP_006549.1 UniGene:Hs.444558
ProteinModelPortal:O75525 SMR:O75525 IntAct:O75525
MINT:MINT-1411200 STRING:O75525 PhosphoSite:O75525 PaxDb:O75525
PRIDE:O75525 DNASU:10656 Ensembl:ENST00000355849 GeneID:10656
KEGG:hsa:10656 UCSC:uc003yuv.3 UCSC:uc003yuw.3 CTD:10656
GeneCards:GC08P136538 HGNC:HGNC:18117 HPA:HPA000275 HPA:HPA000500
MIM:610421 neXtProt:NX_O75525 PharmGKB:PA30094 InParanoid:O75525
KO:K14942 OMA:ETYGEYE OrthoDB:EOG4DBTFN PhylomeDB:O75525
GenomeRNAi:10656 NextBio:40513 ArrayExpress:O75525 Bgee:O75525
CleanEx:HS_KHDRBS3 Genevestigator:O75525 GermOnline:ENSG00000131773
Uniprot:O75525
Length = 346
Score = 206 (77.6 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +K+ IP+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++
Sbjct: 55 KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRK 114
Query: 306 KRDLKPDPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N+DLHVL+E AE + A ++K L P + +E ++ QL+EL
Sbjct: 115 SGEAKYFHL-NDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQEL 171
Query: 361 AALNGTIRDEEYCRLCGEPGHRQYACPSRTST 392
LNG + + + G+P R P+ T
Sbjct: 172 TYLNGGSENADVPVVRGKPTLRTRGVPAPAIT 203
>TAIR|locus:2096648 [details] [associations]
symbol:AT3G32940 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR004087 SMART:SM00322 EMBL:CP002686
GO:GO:0003723 eggNOG:COG5176 KO:K13095 EMBL:AK226622
IPI:IPI00526408 RefSeq:NP_189783.2 UniGene:At.43616
ProteinModelPortal:Q0WVW4 PaxDb:Q0WVW4 PRIDE:Q0WVW4
EnsemblPlants:AT3G32940.1 GeneID:823058 KEGG:ath:AT3G32940
TAIR:At3g32940 HOGENOM:HOG000120709 InParanoid:Q0WVW4 OMA:LEVETNR
ProtClustDB:CLSN2713407 Genevestigator:Q0WVW4 Uniprot:Q0WVW4
Length = 607
Score = 215 (80.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 51/133 (38%), Positives = 81/133 (60%)
Query: 219 RERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNT 278
R L E++E I +I++ NP +K P DY+P + +L I +KE+ ++F+ LI G +G+T
Sbjct: 101 RTDLEFEKREAIGEILELNPRYKAPPDYKPLLKEARLPIDVKEHSDFSFLSLIFGSQGDT 160
Query: 279 QKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENE------DLHVLVEAETQESLE 332
QKR+E+ETGAK+ I G K G +K +L P ENE +L+ + ++T E ++
Sbjct: 161 QKRLEKETGAKVQIFG---TKTGG--EKVELSPS-DENEIQKSWQELYFQISSDTYEKVD 214
Query: 333 GAAAMVEKLLQPV 345
A A+VE L+ V
Sbjct: 215 AAIAVVELLMSSV 227
Score = 41 (19.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 713 YGSSMPPMPPNVQPAYATAPLG 734
YGS P +V P A+ P G
Sbjct: 434 YGSGSSLRPMSVSPHIASRPAG 455
>MGI|MGI:1313312 [details] [associations]
symbol:Khdrbs3 "KH domain containing, RNA binding, signal
transduction associated 3" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003727 "single-stranded RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=ISO]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=ISO]
InterPro:IPR004087 PROSITE:PS50084 SMART:SM00322 MGI:MGI:1313312
GO:GO:0005634 GO:GO:0006355 GO:GO:0003727 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 eggNOG:COG5176
GeneTree:ENSGT00550000074434 GO:GO:0033120 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:10656 KO:K14942 OMA:ETYGEYE
OrthoDB:EOG4DBTFN EMBL:AF079763 EMBL:AF099092 EMBL:BC031507
EMBL:BC057577 IPI:IPI00314520 RefSeq:NP_034288.2 UniGene:Mm.17964
ProteinModelPortal:Q9R226 SMR:Q9R226 IntAct:Q9R226 STRING:Q9R226
PhosphoSite:Q9R226 PaxDb:Q9R226 PRIDE:Q9R226
Ensembl:ENSMUST00000022954 GeneID:13992 KEGG:mmu:13992
UCSC:uc007wbf.1 InParanoid:Q9R226 NextBio:284872 Bgee:Q9R226
Genevestigator:Q9R226 GermOnline:ENSMUSG00000022332 Uniprot:Q9R226
Length = 346
Score = 201 (75.8 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 60/177 (33%), Positives = 98/177 (55%)
Query: 199 SPEPIYDNMGIRINTREYRARER-LNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYI 257
S +P + + +R+ RE ++ KE ++ I +I +N KL +K+ I
Sbjct: 15 SLDPSFTH-ALRLVNREIEKFQKGEGKEEEKYIDVVINKNM-----------KLGQKVLI 62
Query: 258 PMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQKRDLKPDP 313
P+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++ + K
Sbjct: 63 PVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFH 122
Query: 314 SENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNG 365
N+DLHVL+E AE + A ++K L P + +E ++ QL+EL LNG
Sbjct: 123 L-NDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>ZFIN|ZDB-GENE-040426-2344 [details] [associations]
symbol:khdrbs1b "KH domain containing, RNA
binding, signal transduction associated 1b" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2344 GO:GO:0003723 EMBL:BX547939 HSSP:Q9BW01
eggNOG:COG5176 GeneTree:ENSGT00550000074434 InterPro:IPR012956
Pfam:PF08143 HOGENOM:HOG000230771 HOVERGEN:HBG079164 KO:K13198
OMA:FMELSYL OrthoDB:EOG4JHCGB EMBL:BC067711 EMBL:BC155179
IPI:IPI00494960 RefSeq:NP_998400.1 UniGene:Dr.162044
Ensembl:ENSDART00000103471 GeneID:406516 KEGG:dre:406516 CTD:406516
InParanoid:Q6NW62 NextBio:20818091 Uniprot:Q6NW62
Length = 352
Score = 200 (75.5 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 45/124 (36%), Positives = 81/124 (65%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 58 KLKERILIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKNKEEELRK 117
Query: 310 KPDPSE---NEDLHVLVE--AETQES-LEGAAAM--VEKLLQPVDEVLNEHKRQQLRELA 361
+P + +LHV +E A ++ + A AM ++K L P +++++ ++Q E+
Sbjct: 118 NGEPKYAHLSMELHVFIEVFAPVPDAYMRMAHAMEEIKKFLFP--DMMDDICQEQFMEMK 175
Query: 362 ALNG 365
LNG
Sbjct: 176 FLNG 179
>RGD|620921 [details] [associations]
symbol:Khdrbs3 "KH domain containing, RNA binding, signal
transduction associated 3" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0017124 "SH3 domain binding" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IMP] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 PROSITE:PS50084
SMART:SM00322 RGD:620921 GO:GO:0005634 GO:GO:0006355 GO:GO:0003727
GO:GO:0006397 GO:GO:0006351 GO:GO:0033120 HOGENOM:HOG000230771
HOVERGEN:HBG079164 CTD:10656 KO:K14942 OrthoDB:EOG4DBTFN
EMBL:AF152547 IPI:IPI00203901 RefSeq:NP_071585.1 UniGene:Rn.229046
ProteinModelPortal:Q9JLP1 STRING:Q9JLP1 PhosphoSite:Q9JLP1
PRIDE:Q9JLP1 GeneID:64015 KEGG:rno:64015 UCSC:RGD:620921
eggNOG:NOG249423 InParanoid:Q9JLP1 NextBio:612594
ArrayExpress:Q9JLP1 Genevestigator:Q9JLP1
GermOnline:ENSRNOG00000009539 Uniprot:Q9JLP1
Length = 346
Score = 197 (74.4 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 50/125 (40%), Positives = 77/125 (61%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +K+ IP+K++P +NF+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++
Sbjct: 55 KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRK 114
Query: 306 KRDLKPDPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N+DLHVL+E AE + A ++K L P + +E ++ QL+EL
Sbjct: 115 SGEAKYFHL-NDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQEL 171
Query: 361 AALNG 365
LNG
Sbjct: 172 TYLNG 176
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
P P LG+NGA + TNL + YLP + D LF + GDI K+++D++TG S
Sbjct: 23 PNGPLLGTNGATDDSK---TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
GYGFV Y+D A+ AI ++NG +L+ +TI V A
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ + +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + V
Sbjct: 175 KRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 346 NGYRLGERVLQV 357
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
P P LG+NGA + TNL + YLP + D LF + GDI K+++D++TG S
Sbjct: 23 PNGPLLGTNGATDDSK---TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
GYGFV Y+D A+ AI ++NG +L+ +TI V A
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ + +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + V
Sbjct: 175 KRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 346 NGYRLGERVLQV 357
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
P P LG+NGA + TNL + YLP + D LF + GDI K+++D++TG S
Sbjct: 23 PNGPLLGTNGATDDSK---TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
GYGFV Y+D A+ AI ++NG +L+ +TI V A
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ + +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + V
Sbjct: 175 KRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 346 NGYRLGERVLQV 357
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
P P LG+NGA + TNL + YLP + D LF + GDI K+++D++TG S
Sbjct: 23 PNGPLLGTNGATDDSK---TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
GYGFV Y+D A+ AI ++NG +L+ +TI V A
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 346 NGYRLGERVLQV 357
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ + +LFS +G I+ ++++ D+ TG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + V
Sbjct: 175 KRIEAEEAIKGLNGQKPLGAAEPITV 200
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
P P LG+NGA + TNL + YLP + D LF + GDI K+++D++TG S
Sbjct: 23 PNGPLLGTNGATDDSK---TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
GYGFV Y+D A+ AI ++NG +L+ +TI V A
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 346 NGYRLGERVLQV 357
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ + +LFS +G I+ ++++ D+ TG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + V
Sbjct: 175 KRIEAEEAIKGLNGQKPLGAAEPITV 200
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 196 (74.1 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 41/96 (42%), Positives = 58/96 (60%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
P P LG+NGA + TNL + YLP + D LF + GDI K+++D++TG S
Sbjct: 23 PNGPLLGTNGATDDSK---TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQS 79
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
GYGFV Y+D A+ AI ++NG +L+ +TI V A
Sbjct: 80 LGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ + +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + V
Sbjct: 175 KRIEAEEAIKGLNGQKPLGAAEPITV 200
Score = 137 (53.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 347 NGYRLGERVLQV 358
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 177 (67.4 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL + YLP + + L LF + G+I K+++D++T
Sbjct: 17 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 140 (54.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 542 DIQMANNAIASMNG 555
A AI +NG
Sbjct: 175 KRIEAEEAIKGLNG 188
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 173 (66.0 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
T LYIG L P D+ L FS+F + A+V+ ++VTG S+GYGFV + AN+AI+
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 552 SMNGYRLEGRTIAVRVA 568
+MNG L G I+V VA
Sbjct: 91 AMNGQELNGFNISVNVA 107
>UNIPROTKB|F6W1U9 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090681 HGNC:HGNC:9909
EMBL:AC097104 IPI:IPI01022449 ProteinModelPortal:F6W1U9 SMR:F6W1U9
Ensembl:ENST00000545007 ArrayExpress:F6W1U9 Bgee:F6W1U9
Uniprot:F6W1U9
Length = 147
Score = 141 (54.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 35/96 (36%), Positives = 47/96 (48%)
Query: 472 TPGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGM 531
TP GSNG +L TNLYI L P D L++L +G IV K I D+ T
Sbjct: 40 TPNSSS-GSNGND---QLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNK 95
Query: 532 SKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567
KGYGFV + A A+ ++ ++ + VRV
Sbjct: 96 CKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKVRV 131
Score = 52 (23.4 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 4 TVESNPQYQTLDFNQNPPLPQDTLDHDSQNPPKTLAPPDAQNPQPASENG 53
+V S P T +N+N P +L + +APP N P S +G
Sbjct: 4 SVTSRPGISTFGYNRNNKKPYVSL-------AQQMAPPSPSNSTPNSSSG 46
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 186 (70.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + D L LFS+ G++ AK+I+D+V G S GYGFV Y + + A
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAE 75
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V VA
Sbjct: 76 RAINTLNGLRLQSKTIKVSVA 96
Score = 145 (56.1 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +F FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 96 ARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFD 155
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AIAS NG++ G + + V
Sbjct: 156 KRSEAEEAIASFNGHKPPGSSEPITV 181
Score = 129 (50.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL +T+
Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTL 315
Query: 564 AV 565
V
Sbjct: 316 QV 317
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 189 (71.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
TNL + YLP T+ D + LF +FG++ K+I+D+VTG S GYGFV Y + A AI
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 169
Query: 552 SMNGYRLEGRTIAVRVA 568
++NG RL+ +TI V +A
Sbjct: 170 ALNGLRLQNKTIKVSIA 186
Score = 122 (48.0 bits), Expect = 0.00032, P = 0.00032
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTG-----MSKGYG 536
A+P E + NLY+ LP + L LFS +G I+ ++++ D +TG +SKG G
Sbjct: 186 ARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVG 245
Query: 537 FVKYADIQMANNAIASMNGYRLEGRTIAVRV 567
F+++ A+ AI +NG + T + V
Sbjct: 246 FIRFDQRFEADRAIKELNGTTPKNSTEPITV 276
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 167 (63.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
T +Y+G L PT DD L FS +G++V A V++DR T S+G+GFV Y+ A A++
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 552 SMNGYRLEGRTIAVRVAG 569
M+G L GR ++V++ G
Sbjct: 63 GMDGKELNGRRVSVKLFG 80
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 165 (63.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANN 548
L + +++G L P+ D + L F +FG IV A V+ DR +G+S+G+GFV Y I++ANN
Sbjct: 33 LTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANN 92
Query: 549 AIASMNGYRLEGRTIAVRVA 568
A+ +M L+GR I V A
Sbjct: 93 AMQAMQNKELDGRIIGVHPA 112
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 183 (69.5 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 42/93 (45%), Positives = 57/93 (61%)
Query: 480 SNGAKP--IKELDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGY 535
SNG + EL D TNL + YLP + D L LFS+ G++ AK+I+D+V G S GY
Sbjct: 18 SNGYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGY 77
Query: 536 GFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
GFV Y + A AI+++NG RL+ +TI V A
Sbjct: 78 GFVNYLNPNDAERAISTLNGLRLQSKTIKVSYA 110
Score = 128 (50.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + + D NLYI LP T+ + +F +G I+ ++V+ D+ +G+S+G F+++
Sbjct: 110 ARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFD 169
Query: 542 DIQMANNAIASMNGYRLEG 560
A +AI +NG + G
Sbjct: 170 KRAEAEDAIKDLNGQKPPG 188
Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + A AIAS+NGYRL + +
Sbjct: 270 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKIL 329
Query: 564 AV 565
V
Sbjct: 330 QV 331
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 164 (62.8 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 43/97 (44%), Positives = 53/97 (54%)
Query: 478 LGSNGAKPIKE------LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGM 531
+ SNG P+ L T L+IG L DD L F+ FGD+V AKVI DR TG
Sbjct: 15 ISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGR 74
Query: 532 SKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
S+G+GFV + D A AI+ M+G L GR I V A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 181 (68.8 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 36/81 (44%), Positives = 52/81 (64%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + D L LFS+ G++ AK+I+D+V G S GYGFV Y + + A
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAE 75
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 76 RAINTLNGLRLQSKTIKVSFA 96
Score = 146 (56.5 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +F FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 96 ARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFD 155
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AIAS NG++ G + + V
Sbjct: 156 KRSEAEEAIASFNGHKPPGSSEPITV 181
Score = 129 (50.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL +T+
Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTL 315
Query: 564 AV 565
V
Sbjct: 316 QV 317
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 180 (68.4 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + D L LFS+ G++ AK+I+D+V G S GYGFV Y + A
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 76 RAINTLNGLRLQSKTIKVSYA 96
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +FS FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 96 ARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI S NG++ G + + V
Sbjct: 156 KRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL + +
Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 315
Query: 564 AV 565
V
Sbjct: 316 QV 317
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 180 (68.4 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + D L LFS+ G++ AK+I+D+V G S GYGFV Y + A
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 76 RAINTLNGLRLQSKTIKVSYA 96
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP + + +FS FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 96 ARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI S NG++ G + + V
Sbjct: 156 KRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL + +
Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 315
Query: 564 AV 565
V
Sbjct: 316 QV 317
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 180 (68.4 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + D L LFS+ G++ AK+I+D+V G S GYGFV Y + A
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 76 RAINTLNGLRLQSKTIKVSYA 96
Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP ++ + +FS FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 96 ARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI + NG++ G + + V
Sbjct: 156 KRSEAEEAITNFNGHKPPGSSEPITV 181
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL + +
Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 315
Query: 564 AV 565
V
Sbjct: 316 QV 317
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 162 (62.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
+ L++G L DD L + F++FG++ A VI DR TG S+G+GFV ++ ANNAI
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 552 SMNGYRLEGRTIAVRVA 568
M+G L GR I V +A
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 162 (62.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 495 YIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN 554
++G L +D+ L R FS FGD++ +K+I DR +G S+G+GFV + D + +AI MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 555 GYRLEGRTIAVRVA 568
G L+GR I V A
Sbjct: 69 GKELDGRVITVNEA 82
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 180 (68.4 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + D L LFS+ G++ AK+I+D+V G S GYGFV Y + A
Sbjct: 24 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 83
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 84 RAINTLNGLRLQSKTIKVSYA 104
Score = 147 (56.8 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +FS FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 104 ARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 163
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI S NG++ G + + V
Sbjct: 164 KRSEAEEAITSFNGHKPPGSSEPITV 189
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL + +
Sbjct: 264 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 323
Query: 564 AV 565
V
Sbjct: 324 QV 325
>FB|FBgn0034739 [details] [associations]
symbol:CG3927 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=ISM;IEA] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0046331 "lateral inhibition" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0016607 GO:GO:0003723 GO:GO:0046331 HSSP:Q9BW01
eggNOG:COG5176 EMBL:AY075269 ProteinModelPortal:Q8T8U7 SMR:Q8T8U7
STRING:Q8T8U7 PaxDb:Q8T8U7 PRIDE:Q8T8U7 FlyBase:FBgn0034739
InParanoid:Q8T8U7 ArrayExpress:Q8T8U7 Bgee:Q8T8U7 Uniprot:Q8T8U7
Length = 275
Score = 176 (67.0 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 47/140 (33%), Positives = 80/140 (57%)
Query: 236 RNPAFKPPAD-Y--RPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVI 292
R P +P AD Y +P K+ +K+++P+ ++P +NF G I+GP+GN+ +R++ ET KIVI
Sbjct: 68 RIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVI 127
Query: 293 RGKGSVKEGRLQQKRDLKPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQP 344
+G+ S+++ +++ DP ++DL + V A E + A A + K L P
Sbjct: 128 KGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIP 187
Query: 345 VDEVLNEHKRQQLRELAALN 364
D H++Q REL +N
Sbjct: 188 DDNDDVWHEQQ--RELMEMN 205
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 179 (68.1 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + + L LFS+ G++ AK+I+D+V G S GYGFV Y + A
Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI+++NG RL+ +TI V A
Sbjct: 76 RAISTLNGLRLQSKTIKVSYA 96
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +FS FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 96 ARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI S NG++ G + + V
Sbjct: 156 KRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL + +
Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 315
Query: 564 AV 565
V
Sbjct: 316 QV 317
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 179 (68.1 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + + L LFS+ G++ AK+I+D+V G S GYGFV Y + A
Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI+++NG RL+ +TI V A
Sbjct: 76 RAISTLNGLRLQSKTIKVSYA 96
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +FS FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 96 ARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 155
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI S NG++ G + + V
Sbjct: 156 KRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL + +
Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 315
Query: 564 AV 565
V
Sbjct: 316 QV 317
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 180 (68.4 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + D L LFS+ G++ AK+I+D+V G S GYGFV Y + A
Sbjct: 43 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 102
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 103 RAINTLNGLRLQSKTIKVSYA 123
Score = 147 (56.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +FS FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 123 ARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFD 182
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI S NG++ G + + V
Sbjct: 183 KRSEAEEAITSFNGHKPPGSSEPITV 208
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL + +
Sbjct: 283 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKIL 342
Query: 564 AV 565
V
Sbjct: 343 QV 344
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 180 (68.4 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 37/96 (38%), Positives = 56/96 (58%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
P P + +NGA + TNL + YLP + + LF + G+I K+++D++TG S
Sbjct: 22 PNGPVISTNGATDDSK---TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQS 78
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
GYGFV Y D A+ AI ++NG +L+ +TI V A
Sbjct: 79 LGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA 114
Score = 138 (53.6 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 136 (52.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT-GMSKGYGFVKY 540
A+P + D NLY+ LP T+ + +LFS +G I+ ++++ D+VT G+S+G GF+++
Sbjct: 114 ARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRF 173
Query: 541 ADIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + V
Sbjct: 174 DKRNEAEEAIKGLNGQKPLGAAEPITV 200
>FB|FBgn0022984 [details] [associations]
symbol:qkr58E-3 "quaking related 58E-3" species:7227
"Drosophila melanogaster" [GO:0003723 "RNA binding"
evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003729
"mRNA binding" evidence=NAS] [GO:0006915 "apoptotic process"
evidence=IGI;IMP;IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0016607 "nuclear
speck" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0006915
GO:GO:0016607 GO:GO:0003723 HSSP:Q9BW01 GO:GO:0000381
FlyBase:FBgn0022984 EMBL:AY058724 ProteinModelPortal:Q95TJ8
DIP:DIP-21348N IntAct:Q95TJ8 MINT:MINT-310636 STRING:Q95TJ8
PRIDE:Q95TJ8 InParanoid:Q95TJ8 ArrayExpress:Q95TJ8 Bgee:Q95TJ8
Uniprot:Q95TJ8
Length = 320
Score = 178 (67.7 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 42/126 (33%), Positives = 74/126 (58%)
Query: 247 RPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQK 306
+P K+ +K+++P+K+YP +NF G I+GP+GN+ +R++ ET KI I+G+ S+++ +++
Sbjct: 79 KPMKITQKVFVPVKQYPKFNFTGKILGPKGNSLRRLQEETQCKIAIKGRSSIRDRNKEEQ 138
Query: 307 RDLKPDPSE---NEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLR 358
DP +DL + V AE + A A + K L P D+ +E +QLR
Sbjct: 139 LRSTGDPRYAHLQKDLFLEVSTVATPAECYARIAYALAEIRKYLIP-DKN-DEVSHEQLR 196
Query: 359 ELAALN 364
EL ++
Sbjct: 197 ELMEMD 202
>ZFIN|ZDB-GENE-000210-25 [details] [associations]
symbol:khdrbs1a "KH domain containing, RNA binding,
signal transduction associated 1a" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-000210-25 GO:GO:0003723 EMBL:CR376783
GeneTree:ENSGT00550000074434 HOGENOM:HOG000230771
HOVERGEN:HBG079164 EMBL:BC067717 IPI:IPI00504880 RefSeq:NP_571000.1
UniGene:Dr.153239 STRING:Q6NW56 Ensembl:ENSDART00000074787
GeneID:30082 KEGG:dre:30082 CTD:30082 InParanoid:Q6NW56 OMA:ADTEYYD
NextBio:20806567 Uniprot:Q6NW56
Length = 370
Score = 179 (68.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 45/124 (36%), Positives = 75/124 (60%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++++++ IP+K+YP +NF+G I+GP+G+T KR++ +TGAKI + GKGS+++ +++
Sbjct: 68 RVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRK 127
Query: 310 KPDPSENE---DLHVLVE--AETQES-LEGAAAM--VEKLLQPVDEVLNEHKRQQLRELA 361
DP +LHV +E A + L A AM V+K L PV E ++E +
Sbjct: 128 GGDPKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFLMPV-EGMDEMHPDAFMDPG 186
Query: 362 ALNG 365
LNG
Sbjct: 187 FLNG 190
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 177 (67.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
++ TNL + YLP + + L LFS+ G+I AK+I+D+V G S GYGFV Y + A
Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 76 RAINTLNGLRLQSKTIKVSYA 96
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +FS FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 96 ARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFD 155
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI S NG++ G + + V
Sbjct: 156 KRSEAEEAITSFNGHKPPGSSEPITV 181
Score = 126 (49.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A+ AIAS+NGYRL + +
Sbjct: 256 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDKIL 315
Query: 564 AV 565
V
Sbjct: 316 QV 317
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 495 YIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN 554
++G L DD L FS +GD++ +K+I DR TG S+G+GFV +A + AI +MN
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 555 GYRLEGRTIAVRVA 568
G L+GR I V A
Sbjct: 69 GQDLDGRNITVNEA 82
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 483 AKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYAD 542
A+P E TNL++ L +GL F+ FG++ AKV+ DRV+G SKG+GFV+YA
Sbjct: 48 ARPQAE-PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106
Query: 543 IQMANNAIASMNGYRLEGRTIAVRVA 568
++ + IA M+G L+G I A
Sbjct: 107 LEDSAKGIAGMDGKFLDGWVIFAEYA 132
>FB|FBgn0034659 [details] [associations]
symbol:CG4021 species:7227 "Drosophila melanogaster"
[GO:0008150 "biological_process" evidence=ND] [GO:0003723 "RNA
binding" evidence=ISM;IEA] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014
SMART:SM00322 EMBL:AE013599 GO:GO:0016607 GO:GO:0003723
GeneTree:ENSGT00550000074434 RefSeq:NP_611610.2 UniGene:Dm.15712
ProteinModelPortal:Q9W2D0 SMR:Q9W2D0 STRING:Q9W2D0
EnsemblMetazoa:FBtr0071716 GeneID:37484 KEGG:dme:Dmel_CG4021
UCSC:CG4021-RA FlyBase:FBgn0034659 InParanoid:Q9W2D0
OrthoDB:EOG4SQVCF PhylomeDB:Q9W2D0 GenomeRNAi:37484 NextBio:803886
ArrayExpress:Q9W2D0 Bgee:Q9W2D0 Uniprot:Q9W2D0
Length = 319
Score = 176 (67.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 46/140 (32%), Positives = 80/140 (57%)
Query: 236 RNPAFKPPAD-YR--PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVI 292
R P + AD YR P K+ +K+++P+ +YP +NF G I+GP+GN+ +R++ ET KI +
Sbjct: 66 RIPGKELYADVYRQKPMKIIQKVFVPVNQYPKFNFAGKILGPKGNSLRRLQEETQCKIAL 125
Query: 293 RGKGSVKEGRLQQKRDLKPDP-----SENEDLHV---LVEAETQESLEGAAAMVEKLLQP 344
+G+ S+++ ++ +L+ DP +N L V + AE + A A + K L P
Sbjct: 126 KGRSSMRDRNKEE--ELRSDPRYAHLQKNLFLEVSTVAIPAECHSRIAYALAEIRKYLIP 183
Query: 345 VDEVLNEHKRQQLRELAALN 364
+ +E +QLREL ++
Sbjct: 184 DNN--DEVSHEQLRELMEID 201
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 177 (67.4 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL + YLP + + L LF + G+I K+++D++T
Sbjct: 17 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 149 (57.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITV 200
Score = 135 (52.6 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
PGHPG G +++ L P D+ L ++F FG + KVI+D T
Sbjct: 269 PGHPGTG------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 316
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565
KG+GFV + A AIAS+NGYRL R + V
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 176 (67.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL + YLP + + L LF + G+I K+++D++T
Sbjct: 17 GPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 149 (57.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITV 200
Score = 135 (52.6 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
PGHPG G +++ L P D+ L ++F FG + KVI+D T
Sbjct: 256 PGHPGTG------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 303
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565
KG+GFV + A AIAS+NGYRL R + V
Sbjct: 304 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 336
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 177 (67.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL + YLP + + L LF + G+I K+++D++T
Sbjct: 45 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 104
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 105 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 143
Score = 149 (57.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 143 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 202
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 203 KRIEAEEAIKGLNGQKPPGATEPITV 228
Score = 135 (52.6 bits), Expect = 9.4e-06, P = 9.4e-06
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
PGHPG G +++ L P D+ L ++F FG + KVI+D T
Sbjct: 297 PGHPGTG------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 344
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565
KG+GFV + A AIAS+NGYRL R + V
Sbjct: 345 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 377
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 177 (67.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL + YLP + + L LF + G+I K+++D++T
Sbjct: 46 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 105
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 106 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 144
Score = 149 (57.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 144 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 203
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 204 KRIEAEEAIKGLNGQKPPGATEPITV 229
Score = 135 (52.6 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
PGHPG G +++ L P D+ L ++F FG + KVI+D T
Sbjct: 299 PGHPGTG------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 346
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565
KG+GFV + A AIAS+NGYRL R + V
Sbjct: 347 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 379
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 177 (67.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL + YLP + + L LF + G+I K+++D++T
Sbjct: 46 GPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 105
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 106 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 144
Score = 149 (57.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 144 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 203
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 204 KRIEAEEAIKGLNGQKPPGATEPITV 229
Score = 135 (52.6 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
PGHPG G +++ L P D+ L ++F FG + KVI+D T
Sbjct: 298 PGHPGTG------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 345
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565
KG+GFV + A AIAS+NGYRL R + V
Sbjct: 346 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 378
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 177 (67.4 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
TNL + YLP ++ + L LF + G+I K+++D++TG S GYGFV Y D + A AI
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126
Query: 552 SMNGYRLEGRTIAVRVA 568
++NG RL+ +TI V A
Sbjct: 127 TLNGLRLQTKTIKVSYA 143
Score = 147 (56.8 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTGMS+G GF+++
Sbjct: 143 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFD 202
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + T + V
Sbjct: 203 KRIEAEEAIKGLNGQKPPAATEPITV 228
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L ++F FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 367 NGYRLGDRVLQV 378
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 175 (66.7 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 35/75 (46%), Positives = 51/75 (68%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+Y+G LP +D+ L +LFS G +V A+V+ DR TG S+G+GFV +D+ N AI+++
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 554 NGYRLEGRTIAVRVA 568
+G LEGR I V VA
Sbjct: 306 DGQNLEGRAIRVNVA 320
Score = 126 (49.4 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G L ++ L LF G + +A+VI +R T S+G+GFV + + A A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 550 IASMNGYRLEGRTIAVRVA 568
+ N Y L GR + V A
Sbjct: 208 VEKFNRYDLNGRLLTVNKA 226
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 176 (67.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL + YLP + + L LF + G+I K+++D++T
Sbjct: 17 GPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 149 (57.5 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITV 200
Score = 135 (52.6 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
PGHPG G +++ L P D+ L ++F FG + KVI+D T
Sbjct: 270 PGHPGTG------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 317
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565
KG+GFV + A AIAS+NGYRL R + V
Sbjct: 318 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 350
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 182 (69.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
NL+I +LP T D L +FS FG+I +V+ D TG+S+G+GFVK+ D+ A AI S
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 553 MNGYRLEGRTIAVRVA 568
MNG ++E +T+ VR A
Sbjct: 160 MNGAKVENKTLLVRFA 175
Score = 164 (62.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D TNLY+ LP DD L RLFS G I K+++D+ T + +GYGFV+ + + +A
Sbjct: 380 DPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSA 439
Query: 550 IASMNGYRLEGRTIAV 565
I S+NG ++ G+TI+V
Sbjct: 440 INSINGVQVGGKTISV 455
Score = 143 (55.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 480 SNGAKPIKELD-DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFV 538
+N I E N++I LP D + L LFS +G++V +K++ D T S+G G V
Sbjct: 206 NNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLV 265
Query: 539 KYADIQMANNAIASMNGYRLEG--RTIAVRVA 568
+Y D Q A NA+ S+NG+ L+ + + VR A
Sbjct: 266 RYIDTQSAINAVKSLNGFILQDPEKPLIVRFA 297
Score = 40 (19.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 83 NGLTNTHSGTDKDQXXXXXXXXXXXXXXXXWDPPP 117
N TNT++ TD D PPP
Sbjct: 39 NTNTNTNTNTDTDSIEATTTPTPIPTPAVVTTPPP 73
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 172 (65.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+Y+G LP +D L RLFS G +V A+V+ DR TG S+G+GFV+ ++ N AIA++
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 554 NGYRLEGRTIAVRVA 568
+G LEGR I V VA
Sbjct: 269 DGQNLEGRAIKVNVA 283
Score = 132 (51.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G LP +D L LF G + +++VI +R T S+G+GFV + ++ A A
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 550 IASMNGYRLEGRTIAVRVA 568
+ N + + GR + V A
Sbjct: 171 VEKFNSFEVNGRRLTVNRA 189
Score = 39 (18.8 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 152 PDFMKDFTGGIEFDPEIQAL 171
P+ K F G + +D + QAL
Sbjct: 110 PEEAKLFVGNLPYDVDSQAL 129
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 156 (60.0 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 495 YIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN 554
++G L DD L F+ +GD++ +K+I DR TG S+G+GFV + D + +AI MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 555 GYRLEGRTIAVRVA 568
G L+GR+I V A
Sbjct: 71 GQDLDGRSITVNEA 84
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 179 (68.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
G +K D NL+I +LP D LI F+ FG I+ AKV D+VT +SK +GFV Y
Sbjct: 493 GNGDVKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYE 552
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
+ Q A NAI++MNG+++ + + V++
Sbjct: 553 NAQSATNAISAMNGFQIGSKRLKVQL 578
Score = 46 (21.3 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 345 VDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKS 395
+ ++ +H + LRE+ A G I D C + + + C T T +S
Sbjct: 146 IGQLSKKHNEENLREIFAKFGHIED---CSVLRDQDGKSRGCAFVTFTNRS 193
Score = 44 (20.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 277 NTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKP 311
+TQK + +T + I G GS K G ++L P
Sbjct: 221 DTQKDKDVKTKSMITGSGAGSPKGGAASLLQNLNP 255
Score = 42 (19.8 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 152 PDFMKDFTGGIEFDPEIQALNSRLLEISRMLQSGL-PLDDRPEGQ 195
PD + T D + +N+RL S+M Q G PL R Q
Sbjct: 364 PDSASNATDSSSDDNNV--MNNRLTPTSKMAQYGYGPLIPRHPAQ 406
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 153 (58.9 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 39/89 (43%), Positives = 50/89 (56%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D G SKG+GFV Y
Sbjct: 97 GAKA-KEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYE 152
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G+ I V A K
Sbjct: 153 KHEDANKAVEEMNGKEISGKIIFVGRAQK 181
>WB|WBGene00044674 [details] [associations]
symbol:B0280.17 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0008219 "cell death" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
GO:GO:0009792 GO:GO:0008219 GO:GO:0000003 GO:GO:0003723
eggNOG:COG5176 GeneTree:ENSGT00550000074434 EMBL:FO080148
RefSeq:NP_001040836.2 ProteinModelPortal:Q2V4X2 SMR:Q2V4X2
EnsemblMetazoa:B0280.17 GeneID:4363051 KEGG:cel:CELE_B0280.17
UCSC:B0280.17 CTD:4363051 WormBase:B0280.17 HOGENOM:HOG000020938
InParanoid:Q2V4X2 OMA:IRGKGCT NextBio:959623 Uniprot:Q2V4X2
Length = 260
Score = 167 (63.8 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 39/125 (31%), Positives = 74/125 (59%)
Query: 250 KLQK--KLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQK- 306
K +K K++ P + N +G +IGPRG T +++E++ G K+ IRGKG K+ +++
Sbjct: 136 KFEKIDKVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAKEERL 195
Query: 307 RDLKPDPSENEDLHVL--VEAETQESLEGAAAMVEKLLQP-VDEVLNEHKRQQLRELAAL 363
R+ E +HV+ V ++++E+ + ++K+LQ ++ +E KR QL +LA +
Sbjct: 196 RERVGWEHLKEPIHVMISVRSDSEEAASEKLSSIKKMLQEFLEHTDSELKRSQLMQLAVI 255
Query: 364 NGTIR 368
GT++
Sbjct: 256 EGTLK 260
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 172 (65.6 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 40 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 99
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 100 KAINTLNGLRLQTKTIKVSYA 120
Score = 150 (57.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 120 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 179
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 180 KRIEAEEAIKGLNGQKPSGATEPITV 205
Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 330 NGYRLGDRVLQV 341
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 172 (65.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 102 KAINTLNGLRLQTKTIKVSYA 122
Score = 150 (57.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 122 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 182 KRIEAEEAIKGLNGQKPSGATEPITV 207
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 345 NGYRLGDRVLQV 356
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 172 (65.6 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 102 KAINTLNGLRLQTKTIKVSYA 122
Score = 150 (57.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 122 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 182 KRIEAEEAIKGLNGQKPSGATEPITV 207
Score = 131 (51.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 345 NGYRLGDRVLQV 356
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 172 (65.6 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 107 KAINTLNGLRLQTKTIKVSYA 127
Score = 150 (57.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 127 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 187 KRIEAEEAIKGLNGQKPSGATEPITV 212
Score = 131 (51.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 350 NGYRLGDRVLQV 361
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 172 (65.6 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 107 KAINTLNGLRLQTKTIKVSYA 127
Score = 150 (57.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 127 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 187 KRIEAEEAIKGLNGQKPSGATEPITV 212
Score = 131 (51.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 350 NGYRLGDRVLQV 361
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 172 (65.6 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 95 KAINTLNGLRLQTKTIKVSYA 115
Score = 150 (57.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 175 KRIEAEEAIKGLNGQKPSGATEPITV 200
Score = 131 (51.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 352 NGYRLGDRVLQV 363
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 172 (65.6 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 95 KAINTLNGLRLQTKTIKVSYA 115
Score = 150 (57.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 175 KRIEAEEAIKGLNGQKPSGATEPITV 200
Score = 131 (51.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 352 NGYRLGDRVLQV 363
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 152 (58.6 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G L D+ L FS+FG I V+KDR T S+G+GF+ + + + A+NA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG L+GR I V AGK
Sbjct: 64 MRAMNGESLDGRQIRVDHAGK 84
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 172 (65.6 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 102 KAINTLNGLRLQTKTIKVSYA 122
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 122 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 182 KRIEAEEAIKGLNGQKPSGATEPITV 207
Score = 131 (51.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 359 NGYRLGDRVLQV 370
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 172 (65.6 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 102 KAINTLNGLRLQTKTIKVSYA 122
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 122 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 181
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 182 KRIEAEEAIKGLNGQKPSGATEPITV 207
Score = 131 (51.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 359 NGYRLGDRVLQV 370
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 172 (65.6 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 58 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 117
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 118 KAINTLNGLRLQTKTIKVSYA 138
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 138 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 197
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 198 KRIEAEEAIKGLNGQKPSGATEPITV 223
Score = 131 (51.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 361 NGYRLGDRVLQV 372
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 172 (65.6 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 46 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 105
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 106 KAINTLNGLRLQTKTIKVSYA 126
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 126 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 185
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 186 KRIEAEEAIKGLNGQKPSGATEPITV 211
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 363 NGYRLGDRVLQV 374
>FB|FBgn0022987 [details] [associations]
symbol:qkr54B "quaking related 54B" species:7227 "Drosophila
melanogaster" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 SMART:SM00322
EMBL:AE013599 GO:GO:0005737 GO:GO:0003723
GeneTree:ENSGT00550000074434 KO:K14942 RefSeq:NP_523772.1
RefSeq:NP_725679.1 RefSeq:NP_725680.2 UniGene:Dm.667 GeneID:36966
KEGG:dme:Dmel_CG4816 CTD:36966 FlyBase:FBgn0022987 GenomeRNAi:36966
NextBio:801273 EMBL:AF096272 EMBL:AY095201 SMR:Q7KNS5
EnsemblMetazoa:FBtr0086923 EnsemblMetazoa:FBtr0086925
EnsemblMetazoa:FBtr0306248 UCSC:CG4816-RA InParanoid:Q7KNS5
OMA:AYARIAY Uniprot:Q7KNS5
Length = 428
Score = 173 (66.0 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 54/179 (30%), Positives = 97/179 (54%)
Query: 201 EPIYDNMGIRINT-REYRARERLNKERQEIISQIIKRNPAFKPP-AD-YR--PPKLQKKL 255
E I D M R R++ E+L + E + Q R P+ + AD YR P ++ +++
Sbjct: 67 EYIRDCMAERNRMDRKFPIAEKLLEGEIEKV-QTTGRIPSREQKYADIYREKPLRISQRV 125
Query: 256 YIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGS----VKEGRLQQKRDLKP 311
+P++E+P +NF+G ++GP+GN+ +R++ ET K+ + G+ S VKE L+ +D K
Sbjct: 126 LVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKY 185
Query: 312 DPSENEDLHVLVE-----AETQESLEGAAAMVEKLLQP-VDEVLNEHKRQQLRELAALN 364
N DLHV + AE + A A + K L P ++++ + + ++L + +LN
Sbjct: 186 -AHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLRELMDSTSLN 243
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 172 (65.6 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 107 KAINTLNGLRLQTKTIKVSYA 127
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 127 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 187 KRIEAEEAIKGLNGQKPSGATEPITV 212
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 364 NGYRLGDRVLQV 375
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 172 (65.6 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 107 KAINTLNGLRLQTKTIKVSYA 127
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 127 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 186
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 187 KRIEAEEAIKGLNGQKPSGATEPITV 212
Score = 131 (51.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 364 NGYRLGDRVLQV 375
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 172 (65.6 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 36/88 (40%), Positives = 54/88 (61%)
Query: 481 NGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKY 540
NG++ K TNL + YLP + + L LF + G+I K+++D++TG S GYGFV Y
Sbjct: 61 NGSEDSK----TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 116
Query: 541 ADIQMANNAIASMNGYRLEGRTIAVRVA 568
+ + A AI ++NG RL+ +TI V A
Sbjct: 117 MEPKDAEKAINTLNGLRLQTKTIKVSYA 144
Score = 152 (58.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS FG I+ ++++ D+VTG+S+G GF+++
Sbjct: 144 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFD 203
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 204 RRVEAEEAIKGLNGQKPPGATEPITV 229
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D++ L ++F FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 367 NGYRLGDRVLQV 378
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 172 (65.6 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 490 DD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
DD TNL + YLP + + LF + G+I K+++D++TG S GYGFV Y D + A
Sbjct: 84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 143
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++NG RL+ +TI V A
Sbjct: 144 KAINTLNGLRLQTKTIKVSYA 164
Score = 141 (54.7 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG S+G GF+++
Sbjct: 164 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFD 223
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + V
Sbjct: 224 KRIEAEEAIKGLNGQKPSGAAEPITV 249
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L +LF FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 387 NGYRLGDRVLQV 398
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 151 (58.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
+ LY+G L + D L R F+ +G + A+V+ DR TG S+G+GFV+ Q A AIA
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 552 SMNGYRLEGRTIAVRVA 568
+NG ++GR + V A
Sbjct: 63 GLNGKEMDGRNLMVNEA 79
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 151 (58.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L D+ L +FS +G I V+KDR T S+G+GFV + + + A +A
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+A MNG ++GR I V AGK
Sbjct: 64 MAGMNGKTVDGRQIRVDQAGK 84
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL YLP + + L LF + G+I K+++D++T
Sbjct: 17 GPTTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 149 (57.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITV 200
Score = 135 (52.6 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
PGHPG G +++ L P D+ L ++F FG + KVI+D T
Sbjct: 269 PGHPGTG------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 316
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565
KG+GFV + A AIAS+NGYRL R + V
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
Score = 43 (20.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 345 VDEVLNEHKRQQLRELAALNGTIRDEEYCRL 375
+D L ++ Q+ EL +L G+I + E C+L
Sbjct: 42 IDNYLPQNMTQE--ELKSLFGSIGEIESCKL 70
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 474 GHPGLGSNGAKPIKE--LDD--TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT 529
G + +N + P+ +D TNL YLP + + L LF + G+I K+++D++T
Sbjct: 17 GPTTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 76
Query: 530 GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y D + A AI ++NG RL+ +TI V A
Sbjct: 77 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
Score = 149 (57.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 115 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFD 174
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 175 KRIEAEEAIKGLNGQKPPGATEPITV 200
Score = 135 (52.6 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 35/93 (37%), Positives = 47/93 (50%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
PGHPG G +++ L P D+ L ++F FG + KVI+D T
Sbjct: 269 PGHPGTG------------WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 316
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565
KG+GFV + A AIAS+NGYRL R + V
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
Score = 43 (20.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 345 VDEVLNEHKRQQLRELAALNGTIRDEEYCRL 375
+D L ++ Q+ EL +L G+I + E C+L
Sbjct: 42 IDNYLPQNMTQE--ELKSLFGSIGEIESCKL 70
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANN 548
LD+ L +G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 549 AIASMNGYRLEGRTIAVRVAGK 570
A+ +MNG ++GR I V AGK
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANN 548
LD+ L +G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 549 AIASMNGYRLEGRTIAVRVAGK 570
A+ +MNG ++GR I V AGK
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANN 548
LD+ L +G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 549 AIASMNGYRLEGRTIAVRVAGK 570
A+ +MNG ++GR I V AGK
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G L D+ L FS+FG I V+KDR T S+G+GF+ + + + A+NA
Sbjct: 4 EEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG L+GR I V AGK
Sbjct: 64 MRAMNGESLDGRQIRVDHAGK 84
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>FB|FBgn0022986 [details] [associations]
symbol:qkr58E-1 "quaking related 58E-1" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 SMART:SM00322
GO:GO:0022008 GO:GO:0003723 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 HSSP:Q9BW01 eggNOG:COG5176 OrthoDB:EOG4SBCDH
EMBL:AF038584 ProteinModelPortal:O44435 SMR:O44435 PaxDb:O44435
PRIDE:O44435 FlyBase:FBgn0022986 InParanoid:O44435
ArrayExpress:O44435 Bgee:O44435 Uniprot:O44435
Length = 396
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 63/239 (26%), Positives = 111/239 (46%)
Query: 222 LNKERQEI-ISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQK 280
L+ E ++I +S I + + +P ++ +K+ P+KEYP +NF+G I+GP+GNT +
Sbjct: 83 LDDEVEKILVSGRIPKPEIYANVYSEKPIRVAQKVLFPIKEYPKFNFVGKILGPKGNTLR 142
Query: 281 RMERETGAKIVIRGKGSVKE-GRLQQKRDL-KPDPSE-NEDLHVLVE-----AETQESLE 332
+++ ET K+V+ G S+++ G+ ++ R P + + DLHV + AE +
Sbjct: 143 QLQEETMCKMVVMGGNSMRDHGKEEELRSSGNPKYAHLSRDLHVEISTVAPPAEAYHRIS 202
Query: 333 GAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIR-DEEYCRLCGEPGHRQYACPSRTS 391
A + K + P + ++ + +QLRE+ + Y + G+ G P S
Sbjct: 203 YALGEIRKFMIP--DANDDIRLEQLREMDGKERMYKKSHHYSKSYGDHGAYSSRTPPPAS 260
Query: 392 TFKS--DVLCKICGDGGHPTIDCLVKGTTGKKMDDEYQNFLAELG--GTLPESASKQST 446
+ +L K P +VK T + D E + E T P SK ST
Sbjct: 261 SKPKVYSILEKARYVMDDPNYG-IVK--THRSRDHELYDHHGEYDRYATPPPQTSKHST 316
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 36/86 (41%), Positives = 49/86 (56%)
Query: 487 KELD-DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMA-KVIKDRVTGMSKGYGFVKYADIQ 544
K LD N++IG L P +D+ L FS FG I+ K+++D TG SKGY F+ +A
Sbjct: 51 KNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFD 110
Query: 545 MANNAIASMNGYRLEGRTIAVRVAGK 570
++ AI +MNG L R I V A K
Sbjct: 111 ASDAAIEAMNGQYLCNRPITVSYAFK 136
>FB|FBgn0034731 [details] [associations]
symbol:CG10384 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
SMART:SM00322 EMBL:AE013599 GO:GO:0003723
GeneTree:ENSGT00550000074434 UniGene:Dm.10916 GeneID:37567
KEGG:dme:Dmel_CG10384 FlyBase:FBgn0034731 GenomeRNAi:37567
NextBio:804326 RefSeq:NP_611673.2 ProteinModelPortal:Q9W249
SMR:Q9W249 PRIDE:Q9W249 EnsemblMetazoa:FBtr0300683 UCSC:CG10384-RA
InParanoid:Q9W249 OMA:DYHDDIR PhylomeDB:Q9W249 ArrayExpress:Q9W249
Bgee:Q9W249 Uniprot:Q9W249
Length = 470
Score = 171 (65.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 38/128 (29%), Positives = 75/128 (58%)
Query: 247 RPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQK 306
+P K+ K+ +P++++P +NF+G ++GP+GN+ KR++ +T K+ + G+GS+++ R +++
Sbjct: 8 KPVKVAVKVAVPVRDHPKFNFVGKLLGPKGNSMKRLQEDTMCKMAVLGRGSMRDRRKEEE 67
Query: 307 RDLKPDPSEN---EDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLR 358
D EDLHV + AE + A A V + L P + ++ +++Q+
Sbjct: 68 LRGSGDSRYAHLFEDLHVEISTFAAPAEAHARIAYALAEVRRFLVP--DYHDDIRQEQMW 125
Query: 359 ELAALNGT 366
E+ AL T
Sbjct: 126 EMQALTST 133
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 148 (57.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAI 550
+T +Y+ LP +GLI F FG+IV AKV+ D T SKG+GFV + +++ A A
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 551 ASMNGYRLEGRTIAVRVA 568
+ N + ++GRT+ ++A
Sbjct: 68 ENPN-HTIDGRTVNCKLA 84
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 169 (64.5 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
TNL I YLP + + + LF++ G+I K+++D+VTG S GYGFV Y + A A++
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 552 SMNGYRLEGRTIAVRVA 568
S NG RL+ +TI V A
Sbjct: 102 SFNGLRLQNKTIKVSYA 118
Score = 131 (51.2 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + + +NLY+ +P ++ L +F FG I+ ++++ D VTG+SKG GFV++
Sbjct: 118 ARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFD 177
Query: 542 DIQMANNAIASMNG 555
A+ AI ++NG
Sbjct: 178 KKDEADVAIKTLNG 191
Score = 129 (50.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L++ L DD L +LFS FG IV K+++D +T KGY FV ++ A NA+ S+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSL 434
Query: 554 NGYRLEGRTIAV 565
NG L G+T+ V
Sbjct: 435 NGTNLAGKTLQV 446
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 147 (56.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G L D+ L F +FG I V+KDR T S+G+GF+ + D + A++A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG L+GR I V AGK
Sbjct: 64 MRAMNGESLDGRQIRVDHAGK 84
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 147 (56.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G L D+ L FS+FG I V+KDR T S+G+GF+ + + + A++A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG L+GR I V AGK
Sbjct: 64 MRAMNGESLDGRQIRVDHAGK 84
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 147 (56.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G L D+ L FS+FG I V+KDR T S+G+GF+ + + + A++A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG L+GR I V AGK
Sbjct: 64 MRAMNGESLDGRQIRVDHAGK 84
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 147 (56.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
+ L+IG L + GL FS G +V A+++ DRV+ SKG+GFV +A A A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 552 SMNGYRLEGRTIAVRVA 568
NG +L GRTI V A
Sbjct: 94 EFNGQQLNGRTIFVDYA 110
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 166 (63.5 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT-GMSKGYGFVKYADIQMANNAI 550
TNL + YLP + + L LF + G+I K+++D++T G S GYGFV Y D + A AI
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 551 ASMNGYRLEGRTIAVRVA 568
++NG RL+ +TI V A
Sbjct: 126 NTLNGLRLQTKTIKVSYA 143
Score = 149 (57.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + D NLY+ LP T+ L +LFS +G I+ ++++ D+VTG+S+G GF+++
Sbjct: 143 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 202
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G T + V
Sbjct: 203 KRIEAEEAIKGLNGQKPPGATEPITV 228
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
+++ L P D+ L ++F FG + KVI+D T KG+GFV + A AIAS+
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 554 NGYRLEGRTIAV 565
NGYRL R + V
Sbjct: 368 NGYRLGDRVLQV 379
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 145 (56.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L+IG L ++D L + F+ +G I V+KDR T S+G+GFV + ++ A +A
Sbjct: 3 DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDA 62
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 63 MMAMNGKSVDGRQIRVDQAGK 83
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 145 (56.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANN 548
+ +Y+G L + D L F +G+I AK+I DR TG SKG+ F+ Y A
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 549 AIASMNGYRLEGRTIAVRVA 568
A++ NG L+GR I V +A
Sbjct: 75 AVSKANGIDLQGRKIRVNIA 94
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 145 (56.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L+IG L +++ L ++FS +G I V+KDR T S+G+GFV + + A +A
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 63 MMAMNGKAVDGRQIRVDQAGK 83
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 145 (56.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANN 548
+ +Y+G L + D L F +G+I AK+I DR TG SKG+ F+ Y A
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 549 AIASMNGYRLEGRTIAVRVA 568
A++ NG L+GR I V +A
Sbjct: 75 AVSKANGIDLQGRKIRVNIA 94
>FB|FBgn0034740 [details] [associations]
symbol:nsr "novel spermatogenesis regulator" species:7227
"Drosophila melanogaster" [GO:0003723 "RNA binding"
evidence=ISM;IEA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IMP] [GO:0007291 "sperm individualization" evidence=IMP]
[GO:0007288 "sperm axoneme assembly" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:AE013599 GO:GO:0016607 GO:GO:0003723
GO:GO:0007291 HSSP:Q9BW01 GeneTree:ENSGT00550000074434
GO:GO:0007288 GO:GO:0010608 RefSeq:NP_611682.1
ProteinModelPortal:Q9W224 SMR:Q9W224 MINT:MINT-834857 STRING:Q9W224
EnsemblMetazoa:FBtr0071861 GeneID:37577 KEGG:dme:Dmel_CG3875
UCSC:CG3875-RA CTD:37577 FlyBase:FBgn0034740 InParanoid:Q9W224
OrthoDB:EOG4SXKV2 PhylomeDB:Q9W224 GenomeRNAi:37577 NextBio:804376
ArrayExpress:Q9W224 Bgee:Q9W224 Uniprot:Q9W224
Length = 340
Score = 167 (63.8 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 41/126 (32%), Positives = 72/126 (57%)
Query: 247 RPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQK 306
RP K+ +K+++P+ ++P +NF I+GP+GN+ +R++ ET KIVI+G+ S+++ +++
Sbjct: 82 RPMKITQKVFVPVNKFPKFNFARKILGPKGNSVRRLKEETNCKIVIKGRSSMRDRNKEEE 141
Query: 307 RDLKPDPSE---NEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLR 358
DP ++DL + V A E + A A + K L P D H++Q R
Sbjct: 142 LRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQ--R 199
Query: 359 ELAALN 364
EL +N
Sbjct: 200 ELMEMN 205
Score = 38 (18.4 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 473 PGHPGLGSNGAKPIKELDDTN 493
P P LG +KP + TN
Sbjct: 269 PSRPSLGFEYSKPPPSMTATN 289
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 159 (61.0 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 34/77 (44%), Positives = 46/77 (59%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
TNL + YLP + + L RLFS FG+I AK+I+ R TG+S YGFV Y + A A+
Sbjct: 41 TNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVN 100
Query: 552 SMNGYRLEGRTIAVRVA 568
M+GY G+ + V A
Sbjct: 101 GMDGYETRGKRLKVAFA 117
Score = 117 (46.2 bits), Expect = 0.00036, P = 0.00036
Identities = 29/115 (25%), Positives = 55/115 (47%)
Query: 483 AKPIK-ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + E ++LY+G LP +D+ + LF+T+G+IV +++ + S+G F+++
Sbjct: 117 ARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFE 176
Query: 542 DIQMANNAIASMNGYRLEG--RTIAVRVAGKXXXXXXXXXXXXXXXXXXXVSAPP 594
++ A A M+ Y +EG R + V+ + S PP
Sbjct: 177 LVRDAEVAKYGMDRYMIEGASRPLTVKFVEREKKGSSSTSSGSQYKDKRKSSPPP 231
>UNIPROTKB|K7GNY3 [details] [associations]
symbol:KHDRBS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004088
PROSITE:PS50084 GeneTree:ENSGT00550000074434 EMBL:CU151851
Ensembl:ENSSSCT00000035168 Uniprot:K7GNY3
Length = 242
Score = 157 (60.3 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 47/135 (34%), Positives = 73/135 (54%)
Query: 267 FIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQKRDLKPDPSENEDLHVL 322
F+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++ + K N+DLHVL
Sbjct: 1 FVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHL-NDDLHVL 59
Query: 323 VE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCG 377
+E AE + A ++K L P + +E ++ QL+EL LNG + + + G
Sbjct: 60 IEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNGGSENADVPVVRG 117
Query: 378 EPGHRQYACPSRTST 392
+P R P+ T
Sbjct: 118 KPTLRTRGVPTPAIT 132
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 143 (55.4 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G L D+ L FS+FG I V+KDR T S+G+GF+ + + + A+ A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG L+GR I V AGK
Sbjct: 64 MRAMNGESLDGRQIRVDHAGK 84
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 143 (55.4 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
++ L++G L D+ L FS+FG I V+KDR T S+G+GF+ + + + A++
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG L+GR I V AGK
Sbjct: 64 MRAMNGESLDGRQIRVDHAGK 84
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 143 (55.4 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
T +Y+G LP T +GLI F FG+I+ V+ DR T S+GYGFV + D + A A
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 552 SMNGYRLEGRTIAVRVA 568
N +EGR ++A
Sbjct: 73 DPNP-TIEGRITNCKLA 88
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 142 (55.0 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
LY+G L + +D L +F FG I ++KD TG SKGYGF+ ++D + A A+ +
Sbjct: 15 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 74
Query: 554 NGYRLEGRTIAV 565
NG+ L GR + V
Sbjct: 75 NGFELAGRPMRV 86
>WB|WBGene00013325 [details] [associations]
symbol:Y57G11C.36 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
EMBL:Z99281 GO:GO:0003723 eggNOG:COG5176
GeneTree:ENSGT00550000074434 RefSeq:NP_872088.1
ProteinModelPortal:Q8I4C4 SMR:Q8I4C4 EnsemblMetazoa:Y57G11C.36.1
EnsemblMetazoa:Y57G11C.36.2 EnsemblMetazoa:Y57G11C.36.3
GeneID:259844 KEGG:cel:CELE_Y57G11C.36 UCSC:Y57G11C.36.1 CTD:259844
WormBase:Y57G11C.36 HOGENOM:HOG000022069 InParanoid:Q8I4C4
OMA:HMYELMN NextBio:952632 Uniprot:Q8I4C4
Length = 380
Score = 162 (62.1 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 42/140 (30%), Positives = 73/140 (52%)
Query: 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLK 310
L + + +P++++P YNF+G ++GPRG T K++E TG +I I G+ + ++G D+
Sbjct: 112 LTETIMVPVEKFPDYNFVGRLLGPRGTTAKQLEVTTGCRITILGR-TKRDGS-SSNPDVT 169
Query: 311 PDPSENEDLHVLVEAETQES---LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 367
P + + V A+ ++ L+G ++ +L + +E KRQQL LA +NGT
Sbjct: 170 TGPLR---VQISVPADMPQAAKLLKGGVGHIQAILDVPTDGNDELKRQQLLILANMNGTY 226
Query: 368 RDEEYCRLCGEPGHRQYACP 387
+ PG Y P
Sbjct: 227 QPRGSAT---SPGSGDYGHP 243
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 150 (57.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 38/96 (39%), Positives = 50/96 (52%)
Query: 473 PGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMS 532
P PG +G++ K+ T +++G LP D L + F FGDI A VI DR TG S
Sbjct: 18 PAAPG-AMHGSQ--KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 74
Query: 533 KGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
+GYGFV AD A A N ++GR V +A
Sbjct: 75 RGYGFVTMADRAAAERACKDPNP-NIDGRKANVNLA 109
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G + V+KDR + S+G+GFV + + + A +A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 176 (67.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMA 546
K +DTNL++ +LPP +DD L +LFS FG + +VI D+ TG +KGYGFVK+ A
Sbjct: 764 KHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEA 823
Query: 547 NNAIASMNGYRLEGRTIAVRV 567
MNG+R+ + + V++
Sbjct: 824 LKCQKEMNGFRIGSKFLKVKL 844
Score = 140 (54.3 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
E D TN+++ +LP +D+ L LFS +G ++ +KV+ D G S GYGFV+++ Q +
Sbjct: 105 ERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDP-KGNSYGYGFVRFSSPQESA 163
Query: 548 NAIASMNGYRLEGRTIAVRVA 568
AI ++GY+ + + + R++
Sbjct: 164 AAIEELDGYQYQNKKLLCRLS 184
Score = 128 (50.1 bits), Expect = 0.00019, P = 0.00019
Identities = 37/112 (33%), Positives = 53/112 (47%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
NL+I LP + DD L +LF FG I+ KV+ D G SK GFV+++ A+ AI +
Sbjct: 198 NLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDH-NGQSKFAGFVRFSSELDASKAIDA 256
Query: 553 MNGYRLE---GRTIAVRVAGKXXXXXXXXXXXXXXXXXXXVSAPPVGGYPSQ 601
MNG R+ G + V+ A + APP+ +P Q
Sbjct: 257 MNGVRINKDSGYPLVVKYADTEQQKISRKQRKMQTIYQEKIIAPPI--FPPQ 306
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 341 LLQPVDEVLNEHKRQQLRE 359
LLQ ++L +H QQ +E
Sbjct: 362 LLQQQHQILIDHSHQQQQE 380
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 158 (60.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 41/95 (43%), Positives = 53/95 (55%)
Query: 474 GHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSK 533
G+ G G +GA +Y+G L +DD L LFS G +V A+VI DR +G SK
Sbjct: 191 GYGGGGGSGAG-----SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSK 245
Query: 534 GYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G+GFV Y Q NAI S++G L+GR I V A
Sbjct: 246 GFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 155 (59.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAI 550
D L++G LP +D L +LF + G++ M +VI D++TG S+G+GFV + + A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 551 ASMNGYRLEGRTIAVRVAG 569
NGY L+GR + V AG
Sbjct: 150 QQFNGYELDGRPLRVN-AG 167
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 151 (58.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L+IG L + L FS +G I VI+DR T S+G+GFV + + + A +A
Sbjct: 21 DEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDA 80
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+A+MNG +++GR I V AGK
Sbjct: 81 MAAMNGKQVDGRMIRVDEAGK 101
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/76 (36%), Positives = 48/76 (63%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D ++IG LP L + +I +FS +G++V +++D+ TG SKG+ F+ Y D + A
Sbjct: 34 DSAWVFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLA 93
Query: 550 IASMNGYRLEGRTIAV 565
+ + NG +++GRTI V
Sbjct: 94 VDNFNGIKIKGRTIRV 109
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 30/71 (42%), Positives = 42/71 (59%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
++++G L P + + + F+ FG I A+V+KD TG SKGYGFV + + A NAI
Sbjct: 59 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 118
Query: 553 MNGYRLEGRTI 563
M G L GR I
Sbjct: 119 MGGQWLGGRQI 129
>UNIPROTKB|F6UBL3 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
Length = 133
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 477 GLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYG 536
GL A P+K+ D L++G +P LD+ L LF FG I V+KDR+TG+ KG
Sbjct: 2 GLNPGPAVPMKDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCA 61
Query: 537 FVKYADIQMANNAIASMNGYR-LEGRT 562
F+ Y A A ++++ + L GRT
Sbjct: 62 FLTYCARDSALKAQSALHEQKTLPGRT 88
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAV 565
+ +MNG ++GR I V
Sbjct: 64 MMAMNGKSVDGRQIRV 79
>UNIPROTKB|K7ENG2 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC008735 TIGRFAMs:TIGR01642 HGNC:HGNC:23156
Ensembl:ENST00000590551 Uniprot:K7ENG2
Length = 307
Score = 157 (60.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L+IG LP L+DD + L ++FG + ++KD TG+SKGY F +Y DI + + AIA +
Sbjct: 97 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156
Query: 554 NGYRLEGRTIAVRVA 568
NG +L + + V+ A
Sbjct: 157 NGMQLGDKKLLVQRA 171
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 157 (60.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 30/83 (36%), Positives = 53/83 (63%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I+ + + L+IG + ++D+D L F+ +G++V +VI DR TG S+G+GFV + +
Sbjct: 34 IRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEA 93
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A++AI +++G L GR + V A
Sbjct: 94 ASSAIQALDGRDLHGRVVKVNYA 116
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 475 HPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKG 534
HP L S+ + T LY+G LP ++ + LF+ FG++ +++KD+ TG +G
Sbjct: 48 HPTLSSSEDEEASSTTKT-LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRG 106
Query: 535 YGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
+GFV A Q A AI ++N RT+ VR+A
Sbjct: 107 FGFVVIAASQ-AQTAIDALNEKEYMQRTLKVRIA 139
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 475 HPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKG 534
HP L S+ + T LY+G LP ++ + LF+ FG++ +++KD+ TG +G
Sbjct: 48 HPTLSSSEDEEASSTTKT-LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRG 106
Query: 535 YGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
+GFV A Q A AI ++N RT+ VR+A
Sbjct: 107 FGFVVIAASQ-AQTAIDALNEKEYMQRTLKVRIA 139
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 158 (60.7 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSK--------GYGFVKYADI 543
TNL I YLP + + L LFS+ G++ AK+I+D++ GMS GYGFV Y +
Sbjct: 56 TNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNP 115
Query: 544 QMANNAIASMNGYRLEGRTIAVRVA 568
A AI ++NG RL+ +TI V A
Sbjct: 116 SDAERAINTLNGLRLQSKTIKVSYA 140
Score = 129 (50.5 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P + + D NLYI LP T+ + +F+ +G I+ ++++ D+ +G+S+G F+++
Sbjct: 140 ARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFD 199
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AI +NG + G + + V
Sbjct: 200 KRSEAEEAIKDLNGSKPSGASEPITV 225
Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AI+S+NGYRL + +
Sbjct: 298 DEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLNGYRLGDKVL 357
Query: 564 AV 565
V
Sbjct: 358 QV 359
>UNIPROTKB|H0YAQ3 [details] [associations]
symbol:KHDRBS3 "KH domain-containing, RNA-binding, signal
transduction-associated protein 3" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] GO:GO:0005634 HGNC:HGNC:18117 EMBL:AC040914
EMBL:AC104371 Ensembl:ENST00000517859 Uniprot:H0YAQ3
Length = 196
Score = 142 (55.0 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 45/130 (34%), Positives = 69/130 (53%)
Query: 272 IGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQKRDLKPDPSENEDLHVLVE--- 324
+GPRGN+ KR++ ET K+ I GKGS+ KE L++ + K N+DLHVL+E
Sbjct: 2 LGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHL-NDDLHVLIEVFA 60
Query: 325 --AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHR 382
AE + A ++K L P + +E ++ QL+EL LNG + + + G+P R
Sbjct: 61 PPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTLR 118
Query: 383 QYACPSRTST 392
P+ T
Sbjct: 119 TRGVPAPAIT 128
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 156 (60.0 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 37/92 (40%), Positives = 54/92 (58%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTG-------MSKG----YG 536
++ TNL + YLP + D L LFS+ G++ AK+I+D+V G +SKG YG
Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYG 75
Query: 537 FVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
FV Y + + A AI ++NG RL+ +TI V A
Sbjct: 76 FVNYLNAKDAERAINTLNGLRLQSKTIKVSFA 107
Score = 146 (56.5 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 31/86 (36%), Positives = 50/86 (58%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + D NLYI LP T+ + +F FG I+ ++V+ D+ TG+S+G F+++
Sbjct: 107 ARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFD 166
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRV 567
A AIAS NG++ G + + V
Sbjct: 167 KRSEAEEAIASFNGHKPPGSSEPITV 192
Score = 129 (50.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 505 DDGLI-RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563
D+G++ ++F FG + KVI+D T KG+GFV + + A AIAS+NGYRL +T+
Sbjct: 267 DEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTL 326
Query: 564 AV 565
V
Sbjct: 327 QV 328
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 158 (60.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 476 PGLGSNGAKPIKELDD-----TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTG 530
PG+ +NG L NL+I +P +D L F FG ++ AKV D+ TG
Sbjct: 318 PGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATG 377
Query: 531 MSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567
+SK +GF+ Y A NAI +MNG +L G+ + V++
Sbjct: 378 ISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 151 (58.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 495 YIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN 554
+IG L T D GL F +G +V AKV+ D+ +G S+G+GF+ + + + + AIA+MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 555 GYRLEGRTIAV 565
G L+GRTI V
Sbjct: 70 GMDLDGRTITV 80
>UNIPROTKB|K7EJD7 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589386 Uniprot:K7EJD7
Length = 185
Score = 136 (52.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
NL+I +LP D L+++F FG+++ +KV DR T SK +GFV + + A AI +
Sbjct: 115 NLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 174
Query: 553 MNGYRL 558
MNG+++
Sbjct: 175 MNGFQI 180
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 136 (52.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
LY+G LP + + L + S FG+++ A+VI ++ TG S+GYGF++ D + A + +
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63
Query: 554 NGYRLEGRTIAVRVA 568
NG +EGR + V A
Sbjct: 64 NGKEVEGRQLVVSEA 78
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 136 (52.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
LY+G LP + + L + S FG+++ A+VI ++ TG S+GYGF++ D + A + +
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63
Query: 554 NGYRLEGRTIAVRVA 568
NG +EGR + V A
Sbjct: 64 NGKEVEGRQLVVSEA 78
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 160 (61.4 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D NL+I +LP D LI++F+ FG IV AKV DR T SK +GFV Y +I + A
Sbjct: 427 DGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAA 486
Query: 550 IASMNGYRLEGRTIAVRV 567
I +MNG+++ + + V++
Sbjct: 487 ITAMNGFQIGMKRLKVQL 504
Score = 130 (50.8 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 480 SNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVK 539
SNG P+K+ D L++G +P L++ L LF FG I ++KD+ TGM KG F+
Sbjct: 18 SNGF-PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLT 76
Query: 540 YADIQMANNAIASMNGYR-LEGRTIAVRV 567
Y A A+++ + L G A++V
Sbjct: 77 YCHRDSAVRCQATLHDQKTLPGMNRAMQV 105
Score = 46 (21.3 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 331 LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAA 362
L+ AAA + PV + ++QQ ++LAA
Sbjct: 276 LQAAAAAAQAAANPVLSQQTQQQQQQQQQLAA 307
Score = 37 (18.1 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 219 RERLNKERQEIISQIIKRNP 238
+ER N+ Q++ +Q+ NP
Sbjct: 206 KERQNRRMQQMAAQMGMLNP 225
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 153 (58.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 33/97 (34%), Positives = 56/97 (57%)
Query: 472 TPGHPGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGM 531
T H S+ + I+ + + +++G + + D+ GL FS +G++V AK+I DR TG
Sbjct: 14 TSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGR 73
Query: 532 SKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
S+G+ FV + + A+NA+ ++G L GR I V A
Sbjct: 74 SRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYA 109
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 157 (60.3 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
++++G + + +D + +FS G+++ K++ DR TG KGYGF+++ DIQ A AI +
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 553 MNGYRLEGRTIAV 565
+NGY L GR + V
Sbjct: 79 LNGYELSGRILRV 91
Score = 39 (18.8 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 769 PPVQPPVSSAEKSNYG 784
PP+ PP+ + YG
Sbjct: 242 PPMGPPMGHPQAPQYG 257
>ZFIN|ZDB-GENE-050706-131 [details] [associations]
symbol:u2af2a "U2 small nuclear RNA auxiliary
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0046660 "female sex
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050706-131 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0046660
GeneTree:ENSGT00690000102089 TIGRFAMs:TIGR01642 EMBL:CR848818
IPI:IPI00503978 Ensembl:ENSDART00000124875 Bgee:E7F8Y4
Uniprot:E7F8Y4
Length = 470
Score = 157 (60.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 30/75 (40%), Positives = 49/75 (65%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L+IG LP L+DD + L ++FG + ++KD TG+SKGY F +Y D+ +++ AIA +
Sbjct: 259 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNISDQAIAGL 318
Query: 554 NGYRLEGRTIAVRVA 568
NG +L + + V+ A
Sbjct: 319 NGMQLGDKKLLVQRA 333
>UNIPROTKB|E2R0G3 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00690000102089 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP CTD:11338 EMBL:AAEX03000723 RefSeq:XP_003638845.1
ProteinModelPortal:E2R0G3 Ensembl:ENSCAFT00000004031
GeneID:100687048 KEGG:cfa:100687048 Uniprot:E2R0G3
Length = 471
Score = 157 (60.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L+IG LP L+DD + L ++FG + ++KD TG+SKGY F +Y DI + + AIA +
Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
Query: 554 NGYRLEGRTIAVRVA 568
NG +L + + V+ A
Sbjct: 321 NGMQLGDKKLLVQRA 335
>UNIPROTKB|Q24JZ8 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:DAAA02047732
EMBL:BC114160 IPI:IPI00705989 RefSeq:NP_001068804.1
UniGene:Bt.41502 SMR:Q24JZ8 STRING:Q24JZ8
Ensembl:ENSBTAT00000003664 GeneID:507895 KEGG:bta:507895
InParanoid:Q24JZ8 NextBio:20868263 Uniprot:Q24JZ8
Length = 475
Score = 157 (60.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L+IG LP L+DD + L ++FG + ++KD TG+SKGY F +Y DI + + AIA +
Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
Query: 554 NGYRLEGRTIAVRVA 568
NG +L + + V+ A
Sbjct: 321 NGMQLGDKKLLVQRA 335
>UNIPROTKB|P26368 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0070742
"C2H2 zinc finger domain binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006406 GO:GO:0000398
EMBL:CH471135 Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:4FXW PDBsum:4FXW
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP PDB:1JMT PDBsum:1JMT EMBL:X64044 EMBL:BC008740
EMBL:BC030574 IPI:IPI00031556 IPI:IPI00830039 PIR:S20250
RefSeq:NP_001012496.1 RefSeq:NP_009210.1 UniGene:Hs.528007 PDB:1O0P
PDB:1OPI PDB:1U2F PDB:2G4B PDB:2HZC PDB:2U2F PDB:2YH0 PDB:2YH1
PDBsum:1O0P PDBsum:1OPI PDBsum:1U2F PDBsum:2G4B PDBsum:2HZC
PDBsum:2U2F PDBsum:2YH0 PDBsum:2YH1 ProteinModelPortal:P26368
SMR:P26368 DIP:DIP-2154N IntAct:P26368 MINT:MINT-1192370
STRING:P26368 PhosphoSite:P26368 DMDM:267188 PaxDb:P26368
PRIDE:P26368 DNASU:11338 Ensembl:ENST00000308924
Ensembl:ENST00000450554 GeneID:11338 KEGG:hsa:11338 UCSC:uc002qlt.3
UCSC:uc002qlu.3 CTD:11338 GeneCards:GC19P056165 HGNC:HGNC:23156
HPA:CAB010910 MIM:191318 neXtProt:NX_P26368 PharmGKB:PA134908683
HOVERGEN:HBG062169 InParanoid:P26368 OrthoDB:EOG4PRSQX
PhylomeDB:P26368 ChiTaRS:U2AF2 EvolutionaryTrace:P26368
GenomeRNAi:11338 NextBio:43079 PMAP-CutDB:P26368 Bgee:P26368
CleanEx:HS_U2AF2 Genevestigator:P26368 GermOnline:ENSG00000063244
Uniprot:P26368
Length = 475
Score = 157 (60.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L+IG LP L+DD + L ++FG + ++KD TG+SKGY F +Y DI + + AIA +
Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
Query: 554 NGYRLEGRTIAVRVA 568
NG +L + + V+ A
Sbjct: 321 NGMQLGDKKLLVQRA 335
>MGI|MGI:98886 [details] [associations]
symbol:U2af2 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IDA] [GO:0016607 "nuclear speck" evidence=TAS]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:98886
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:X64587 EMBL:AK078496
IPI:IPI00113746 PIR:S22646 RefSeq:NP_001192160.1 UniGene:Mm.360389
PDB:3V4M PDBsum:3V4M ProteinModelPortal:P26369 SMR:P26369
STRING:P26369 PhosphoSite:P26369 PaxDb:P26369 PRIDE:P26369
Ensembl:ENSMUST00000005041 GeneID:22185 KEGG:mmu:22185
UCSC:uc009ezu.2 InParanoid:P26369 NextBio:302149 PMAP-CutDB:P26369
Bgee:P26369 Genevestigator:P26369 GermOnline:ENSMUSG00000030435
Uniprot:P26369
Length = 475
Score = 157 (60.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L+IG LP L+DD + L ++FG + ++KD TG+SKGY F +Y DI + + AIA +
Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
Query: 554 NGYRLEGRTIAVRVA 568
NG +L + + V+ A
Sbjct: 321 NGMQLGDKKLLVQRA 335
>RGD|1597319 [details] [associations]
symbol:LOC690372 "similar to U2 (RNU2) small nuclear RNA
auxiliary factor 2 isoform b" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0070742 "C2H2 zinc
finger domain binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1597319 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
KO:K12837 TIGRFAMs:TIGR01642 CTD:11338 IPI:IPI00366387
RefSeq:XP_003748811.1 UniGene:Rn.15383 ProteinModelPortal:F2Z3T9
SMR:F2Z3T9 PRIDE:F2Z3T9 Ensembl:ENSRNOT00000021391 GeneID:308335
KEGG:rno:308335 NextBio:740780 Uniprot:F2Z3T9
Length = 475
Score = 157 (60.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L+IG LP L+DD + L ++FG + ++KD TG+SKGY F +Y DI + + AIA +
Sbjct: 261 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 320
Query: 554 NGYRLEGRTIAVRVA 568
NG +L + + V+ A
Sbjct: 321 NGMQLGDKKLLVQRA 335
>UNIPROTKB|E1C131 [details] [associations]
symbol:E1C131 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
IPI:IPI00822398 ProteinModelPortal:E1C131
Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
Length = 123
Score = 134 (52.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 34/88 (38%), Positives = 48/88 (54%)
Query: 472 TPGHP-GL----GSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKD 526
T GH GL G+ P+K+ D L+IG +P LD+ L LF FG I V+KD
Sbjct: 27 TNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD 86
Query: 527 RVTGMSKGYGFVKYADIQMANNAIASMN 554
R TGM KG F+ Y + + A A ++++
Sbjct: 87 RFTGMHKGCAFLTYCERESALKAQSALH 114
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 134 (52.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 34/82 (41%), Positives = 43/82 (52%)
Query: 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMA 546
K+ T +++G LP D L + F FGDI A VI DR TG S+GYGFV AD A
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 547 NNAIASMNGYRLEGRTIAVRVA 568
A N ++GR V +A
Sbjct: 66 ERACKDPNPI-IDGRKANVNLA 86
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 134 (52.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMA 546
K ++ +Y+G LP + ++ L + FS FG I K++++ TG SKGY FV Y + A
Sbjct: 39 KSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQA 98
Query: 547 NNAIASMNGYRLEGRTIAVRVA 568
A+ + +G L+GR++ VR+A
Sbjct: 99 VKALDA-HGKDLQGRSLVVRIA 119
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 134 (52.2 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMA 546
K ++ +Y+G LP + ++ L + FS FG I K++++ TG SKGY FV Y + A
Sbjct: 39 KSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQA 98
Query: 547 NNAIASMNGYRLEGRTIAVRVA 568
A+ + +G L+GR++ VR+A
Sbjct: 99 VKALDA-HGKDLQGRSLVVRIA 119
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 150 (57.9 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 484 KPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADI 543
+P+ + L++G L T+ + L F GD+V A+V+ D TG S+GYGFV Y+
Sbjct: 169 EPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSK 228
Query: 544 QMANNAIASMNGYRLEGRTIAVRVA-GK 570
A+ S++G+ LEGR I V +A GK
Sbjct: 229 AEMETALESLDGFELEGRAIRVNLAQGK 256
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAI 550
+T LY G LP +D L ++ F + + +V+ +R TG S+G+ FV ++++ N I
Sbjct: 84 NTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Query: 551 ASMNGYRLEGRTIAVRVAGK 570
+++G GR + V A K
Sbjct: 144 DNLDGTEYLGRALKVNFADK 163
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 157 (60.3 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D +G SKG+GFV Y
Sbjct: 113 GAKA-KEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYE 168
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G++I V A K
Sbjct: 169 KHEDANKAVEEMNGKEMSGKSIFVGRAQK 197
Score = 134 (52.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 217 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 274
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 275 ATKAVTEMNGRIVGSKPLYVALA 297
Score = 124 (48.7 bits), Expect = 0.00029, P = 0.00029
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
N++I L ++D+ L FS FG+I+ KV+ D G SKGY FV + + AN AI
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEK 86
Query: 553 MNGYRLEGRTIAV 565
MNG L R + V
Sbjct: 87 MNGMLLNDRKVFV 99
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 157 (60.3 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D +G SKG+GFV Y
Sbjct: 184 GAKA-KEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYE 239
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G++I V A K
Sbjct: 240 KHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Score = 134 (52.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALA 368
Score = 124 (48.7 bits), Expect = 0.00032, P = 0.00032
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
N++I L ++D+ L FS FG+I+ KV+ D G SKGY FV + + AN AI
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEK 157
Query: 553 MNGYRLEGRTIAV 565
MNG L R + V
Sbjct: 158 MNGMLLNDRKVFV 170
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 157 (60.3 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D +G SKG+GFV Y
Sbjct: 184 GAKA-KEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYE 239
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G++I V A K
Sbjct: 240 KHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALA 368
Score = 124 (48.7 bits), Expect = 0.00034, P = 0.00034
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
N++I L ++D+ L FS FG+I+ KV+ D G SKGY FV + + AN AI
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEK 157
Query: 553 MNGYRLEGRTIAV 565
MNG L R + V
Sbjct: 158 MNGMLLNDRKVFV 170
>WB|WBGene00022101 [details] [associations]
symbol:Y69A2AR.32 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GeneTree:ENSGT00550000074434 EMBL:FO081818 RefSeq:NP_741340.2
ProteinModelPortal:H2L0S1 PRIDE:H2L0S1 EnsemblMetazoa:Y69A2AR.32a
GeneID:177042 KEGG:cel:CELE_Y69A2AR.32 CTD:177042
WormBase:Y69A2AR.32a OMA:PLHVYIE Uniprot:H2L0S1
Length = 384
Score = 153 (58.9 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 38/107 (35%), Positives = 60/107 (56%)
Query: 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL- 309
L + L +P+++YP YNF+G I+GPRG T K++E+ETG +I +RG+ S + K +
Sbjct: 71 LSEILMVPVEKYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRASTTASNPESKPNKS 130
Query: 310 -----KPDPS---EN----EDLHVLVEAE-TQESLEGAAAMVEKLLQ 343
KP S N E LHV +E + TQ + + A +++Q
Sbjct: 131 TPSFSKPSLSIISRNALTEEPLHVYIECQDTQSAAQAKMAHAVEVIQ 177
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 132 (51.5 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L++G + T+D+ L +FS+FGDI +V + T ++G+ FV+Y ++ A +A+ +M
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 554 NGYRLEGRTIAV 565
N + L G+ I V
Sbjct: 70 NNFELNGKRIHV 81
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 132 (51.5 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMAN 547
+L TNLYI LPP D L++L +G IV K I D+ T KGYGFV + A
Sbjct: 25 QLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQ 84
Query: 548 NAIASM 553
A++++
Sbjct: 85 KAVSAL 90
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 132 (51.5 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L++G + T+D+ L +FS+FGDI +V + T ++G+ FV+Y ++ A +A+ +M
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 554 NGYRLEGRTIAV 565
N + L G+ I V
Sbjct: 70 NNFELNGKRIHV 81
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 132 (51.5 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANN 548
L L++ L ++ L F++FG +V A+VI DR +G SKG+GFV YA I+ A
Sbjct: 31 LTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEK 90
Query: 549 AIASMNGYRLEGRTIAV 565
A A MN L+G I V
Sbjct: 91 AKAEMNAKFLDGWVIFV 107
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D+ L++G L ++ L ++FS +G I V+KDR T S+G+GFV + +I A +A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 550 IASMNGYRLEGRTIAVRVAGK 570
+ +MNG ++GR I V AGK
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 156 (60.0 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 483 AKPIKE-LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
A+P E + DTNLY+ LP T+ DD L +F +G IV +++D++TG +G FV+Y
Sbjct: 201 ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 260
Query: 542 DIQMANNAIASMNGYRLEG--RTIAVRVA 568
+ A AI+++N EG + ++VR+A
Sbjct: 261 KREEAQEAISALNNVIPEGGSQPLSVRLA 289
Score = 126 (49.4 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 478 LGSNGAKPIKE---LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKG 534
LGS G+ + +TNL + YLP + D L LF G I ++++D TG S G
Sbjct: 108 LGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFG 167
Query: 535 YGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
Y FV + + AI +NG + + + V A
Sbjct: 168 YAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 201
Score = 37 (18.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 762 NVPWATNPPVQPPVSSAEKSN 782
NVP PP QPP A N
Sbjct: 310 NVP---PPPPQPPAHMAAAFN 327
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 131 (51.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
L+IG L DD L FS +G I A V+KDR T S+G+GFV++A A+ A+ +M
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAM 63
Query: 554 NGYRLEGRTIAVRVAGK 570
N +GR I V A +
Sbjct: 64 NNQEFDGRIIRVDKASE 80
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 155 (59.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D +G SKG+GFV Y
Sbjct: 184 GAKA-KEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYE 239
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G+ I V A K
Sbjct: 240 KHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 134 (52.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALA 368
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 155 (59.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D +G SKG+GFV Y
Sbjct: 184 GAKA-KEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYE 239
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G+ I V A K
Sbjct: 240 KHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Score = 134 (52.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALA 368
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
++Y+G P ++ L FS+ G I +++ DR TG +G+ F+++A+ A A+
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 553 MNGYRLEGRTIAVRVAGK 570
MNG GR + V +A K
Sbjct: 66 MNGAEFNGRPLRVNLANK 83
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 155 (59.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D +G SKG+GFV Y
Sbjct: 224 GAKA-KEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYE 279
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G+ I V A K
Sbjct: 280 KHEDANKAVEEMNGKEISGKVIFVGRAQK 308
Score = 134 (52.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 328 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 385
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 386 ATKAVTEMNGRIVGSKPLYVALA 408
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 142 (55.0 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
LY+G L + +D L +F FG I ++KD TG SKGYGF+ ++D + A A+ +
Sbjct: 40 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 99
Query: 554 NGYRLEGRTIAV 565
NG+ L GR + V
Sbjct: 100 NGFELAGRPMRV 111
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 154 (59.3 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D +G SKG+GFV Y
Sbjct: 184 GAKA-KEF--TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYE 239
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G+ I V A K
Sbjct: 240 KHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Score = 134 (52.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALA 368
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 153 (58.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 39/89 (43%), Positives = 50/89 (56%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D G SKG+GFV Y
Sbjct: 86 GAKA-KEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYE 141
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G+ I V A K
Sbjct: 142 KHEDANKAVEEMNGKEISGKIIFVGRAQK 170
Score = 134 (52.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 190 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 247
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 248 ATKAVTEMNGRIVGSKPLYVALA 270
Score = 119 (46.9 bits), Expect = 0.00093, P = 0.00093
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552
N++I L ++D+ L FS FG+I+ KV+ D G SKGY FV + + A+ AI
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEK 59
Query: 553 MNGYRLEGRTIAV 565
MNG L R + V
Sbjct: 60 MNGMLLNDRKVFV 72
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 129 (50.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
LY+G++ +D L RLFS G + +I D TG SKG G+V+ + A AI ++
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 554 NGYRLEGRTIAVRVA 568
+G L R I V VA
Sbjct: 65 DGALLRNRVITVSVA 79
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 129 (50.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
LY+G++ +D L RLFS G + +I D TG SKG G+V+ + A AI ++
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 554 NGYRLEGRTIAVRVA 568
+G L R I V VA
Sbjct: 65 DGALLRNRVITVSVA 79
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 129 (50.5 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIA 551
T +Y+G LP ++GL F FGDI+ ++ DR TG S+GYGFV + D + A A
Sbjct: 52 TKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQ 111
Query: 552 SMNGYRLEGRTIAVRVA 568
+ ++GR +A
Sbjct: 112 NPKPV-IDGREAKCNLA 127
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 154 (59.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 43/111 (38%), Positives = 58/111 (52%)
Query: 472 TPGHPGLGS-NGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT- 529
T G+ G GS NG+ E TNL + YLP T+ +D + LFS+ G+I K+I+D+
Sbjct: 129 TNGNAGSGSQNGSNGSTETR-TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQV 187
Query: 530 ------------GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568
G S GYGFV Y Q A A+ +NG RL+ +TI V A
Sbjct: 188 YIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 238
Score = 128 (50.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 494 LYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM 553
++I L P ++ L +LF FG + K++KD T KGYGFV + A AI ++
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 554 NGYRLEGRTIAV 565
NGY + R + V
Sbjct: 464 NGYTMGNRVLQV 475
Score = 42 (19.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 324 EAETQESLEGAAAMVEKLLQPVDEVLNEHK---RQQLRELAAL 363
+ +TQ+++ AAA V + LQ + + + +QQ ++ AA+
Sbjct: 66 QQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQQQQQAAAV 108
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 153 (58.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 39/89 (43%), Positives = 50/89 (56%)
Query: 482 GAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYA 541
GAK KE TN+YI +DD+ L LFS FG + KV++D G SKG+GFV Y
Sbjct: 184 GAKA-KEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYE 239
Query: 542 DIQMANNAIASMNGYRLEGRTIAVRVAGK 570
+ AN A+ MNG + G+ I V A K
Sbjct: 240 KHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Score = 134 (52.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 486 IKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQM 545
I NLYI L T+DD+ L + FS FG I AKV+ + G SKG+GFV ++ +
Sbjct: 288 ISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEE 345
Query: 546 ANNAIASMNGYRLEGRTIAVRVA 568
A A+ MNG + + + V +A
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALA 368
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 141 (54.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
D ++++G L P + + + F+ FG I A+V+KD TG SKGYGFV + + A NA
Sbjct: 104 DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 163
Query: 550 IASMNGYRLEGRTI 563
I M G L GR I
Sbjct: 164 IQQMGGQWLGGRQI 177
WARNING: HSPs involving 530 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.133 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 797 605 0.00086 120 3 11 23 0.48 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 780
No. of states in DFA: 611 (65 KB)
Total size of DFA: 320 KB (2162 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 57.55u 0.13s 57.68t Elapsed: 00:00:04
Total cpu time: 57.57u 0.13s 57.70t Elapsed: 00:00:04
Start: Fri May 10 09:11:35 2013 End: Fri May 10 09:11:39 2013
WARNINGS ISSUED: 2