BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040243
(797 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 259 bits (662), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 151/352 (42%), Positives = 212/352 (60%), Gaps = 29/352 (8%)
Query: 104 TSRRRRRSRWDPPPSESG--GTEGNGDSGS----GTRKRRSRWADDEPKPVIQLPDFMKD 157
+ RR RS+WD G E + D G G RKRRSRW D K + +P
Sbjct: 93 SDRRDERSKWDEGDRREAPRGRERSRDRGDSNEDGPRKRRSRWGDASAK--VNVPGMPVA 150
Query: 158 FTGGI-EFDPEIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREY 216
G + + + + A++ RL EI+R L++G + PEGQRSPSP P YD G R NTRE
Sbjct: 151 VMGNVSQTELDNYAIHVRLEEINRKLRTGDVVP--PEGQRSPSPTPQYDAYGRRTNTREL 208
Query: 217 RARERLNKERQEIISQIIKRNPAFKPPADY---RPPKLQKKLYIPMKEYPGYNFIGLIIG 273
R R++L ER +I + +K +P F+PP D+ R + Q K+YIP+KE+P NF GL++G
Sbjct: 209 RYRKKLEDERTRLIDRAVKSDPNFRPPVDFQHKRGSRPQDKVYIPVKEFPEINFFGLLVG 268
Query: 274 PRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEG 333
PRGN+ K+MERE+GAKI IRGKGSVKEG+ R E ++LH L+ A+ + ++
Sbjct: 269 PRGNSLKKMERESGAKISIRGKGSVKEGK---GRAGNFPQDEEDELHCLITADDESKVKT 325
Query: 334 AAAMVEKLLQPVD---EVLNEHKRQQLRELAALNGTIRDEE--YCRLCGEPGHRQYACPS 388
A++ K+++ E N+HKR QLRELA+LNGT+RD+E C+ CGE GHR++ CP
Sbjct: 326 CVALINKVIETAASTPEGENDHKRNQLRELASLNGTLRDDENQLCQNCGEKGHRRWECPQ 385
Query: 389 RTSTFKSDVLCKICGDGGHPTIDCLVKG----TTGKK--MDDEYQNFLAELG 434
+ + ++V+C+ICG GH DC +G T K+ D EY +AELG
Sbjct: 386 Q-RVYSANVICRICGGAGHMARDCRGRGDPSLTQNKQTAFDSEYTALMAELG 436
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 259 bits (662), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 151/352 (42%), Positives = 212/352 (60%), Gaps = 29/352 (8%)
Query: 104 TSRRRRRSRWDPPPSESG--GTEGNGDSGS----GTRKRRSRWADDEPKPVIQLPDFMKD 157
+ RR RS+WD G E + D G G RKRRSRW D K + +P
Sbjct: 93 SDRRDERSKWDEGDRREAPRGRERSRDRGDSNEDGPRKRRSRWGDASAK--VNVPGMPVA 150
Query: 158 FTGGI-EFDPEIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREY 216
G + + + + A++ RL EI+R L++G + PEGQRSPSP P YD G R NTRE
Sbjct: 151 VMGNVSQTELDNYAIHVRLEEINRKLRTGDVVP--PEGQRSPSPTPQYDAYGRRTNTREL 208
Query: 217 RARERLNKERQEIISQIIKRNPAFKPPADY---RPPKLQKKLYIPMKEYPGYNFIGLIIG 273
R R++L ER +I + +K +P F+PP D+ R + Q K+YIP+KE+P NF GL++G
Sbjct: 209 RYRKKLEDERTRLIDRAVKSDPNFRPPVDFQHKRGSRPQDKVYIPVKEFPEINFFGLLVG 268
Query: 274 PRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEG 333
PRGN+ K+MERE+GAKI IRGKGSVKEG+ R E ++LH L+ A+ + ++
Sbjct: 269 PRGNSLKKMERESGAKISIRGKGSVKEGK---GRAGNFPQDEEDELHCLITADDESKVKT 325
Query: 334 AAAMVEKLLQPVD---EVLNEHKRQQLRELAALNGTIRDEE--YCRLCGEPGHRQYACPS 388
A++ K+++ E N+HKR QLRELA+LNGT+RD+E C+ CGE GHR++ CP
Sbjct: 326 CVALINKVIETAASTPEGENDHKRNQLRELASLNGTLRDDENQLCQNCGEKGHRRWECPQ 385
Query: 389 RTSTFKSDVLCKICGDGGHPTIDCLVKG----TTGKK--MDDEYQNFLAELG 434
+ + ++V+C+ICG GH DC +G T K+ D EY +AELG
Sbjct: 386 Q-RVYSANVICRICGGAGHMARDCRGRGDPSLTQNKQTAFDSEYTALMAELG 436
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 211/363 (58%), Gaps = 41/363 (11%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDP-EIQALNSRLLEISRMLQSGLPLDDR- 191
RK+R+RW + L + + E L+ R+ EI++ L+ +DD
Sbjct: 79 RKKRNRWGEATENKAAGLMGLPTAIVANMTSEQLEAYTLHLRIEEITQKLK----IDDVV 134
Query: 192 -PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYR-PP 249
+G RSPSP P YDN G R+NTREYR R++L ER ++I + +K P + PP+DYR P
Sbjct: 135 PADGDRSPSPAPQYDNHGRRVNTREYRYRKKLEDERHKLIEKAMKTIPNYHPPSDYRRPT 194
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
K Q+K+Y+P+ +YP NFIGL+IGPRGNT K+ME E+GAKI IRGKGSVKEG+ + D
Sbjct: 195 KTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEGK--GRSDA 252
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQ---PVDEVLNEHKRQQLRELAALNGT 366
++ EDLH L+ A+T+E + A ++ +++ + E NE KR QLRELAALNGT
Sbjct: 253 AHSSNQEEDLHCLIMADTEEKVNKAKKLIHNIIETAASIPEGQNELKRNQLRELAALNGT 312
Query: 367 IRDEE--YCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDC------------ 412
+RD+E C+ CG+ GHR+Y CP + + + ++++C++CG+ GH DC
Sbjct: 313 LRDDENQACQNCGQIGHRKYDCPEKQN-YTANIICRVCGNAGHMARDCPDRQRGASWRND 371
Query: 413 ----------LVKGTTGKKMDDEYQNFLAELGGTLPESASKQS--TTLALGPGSGSSGSN 460
+ G +D EY+ + ELGGT A ++ + + GP SG +G
Sbjct: 372 GPGAGRTAGRIGSSGGGDAVDREYEQLMQELGGTGAAPARIEAGPGSFSNGP-SGGNGDA 430
Query: 461 PPW 463
PW
Sbjct: 431 KPW 433
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 248 bits (632), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 213/365 (58%), Gaps = 41/365 (11%)
Query: 130 GSGTRKRRSRWAD---DEPKPVIQLPD-FMKDFTGGIEFDPEIQALNSRLLEISRMLQSG 185
G RK+R+RW D ++ ++ LP M +FT E L+ R+ EIS+ L+
Sbjct: 60 GVKRRKKRNRWGDAQENKAAGLMGLPTMIMANFT---NEQLEAYTLHLRIEEISQKLRIN 116
Query: 186 --LPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPP 243
+P D G RSPSP P YDN G R+NTREYR R+RL ER +++ + +K P + PP
Sbjct: 117 DVVPAD----GDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPP 172
Query: 244 ADYR-PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGR 302
+DYR P K Q+K+Y+P+ +YP NFIGL+IGPRGNT K+ME E+GAKI IRGKGSVKEG+
Sbjct: 173 SDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEGK 232
Query: 303 LQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQ---PVDEVLNEHKRQQLRE 359
+ D ++ EDLH L+ A+T+E + A +V +++ + E NE KR QLRE
Sbjct: 233 --GRSDAAHASNQEEDLHCLIMADTEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRE 290
Query: 360 LAALNGTIRDEE--YCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDC--LVK 415
LAALNGT+RD+E C+ CG+ GHR+Y CP + + F ++++C++CG+ GH DC +
Sbjct: 291 LAALNGTLRDDENQACQNCGQIGHRKYDCPEQRN-FTANIICRVCGNAGHMARDCPDRQR 349
Query: 416 GT----------------TGKKMDDEYQNFLAELGGTLPESASKQSTTLALGPGSGSSGS 459
G+ G +D E + + EL G P + + GP G
Sbjct: 350 GSDWRNGGGYGGGRRAIGQGDAVDREMEQLMQELSGGAPGPDGQPPRRIEAGPDHGYDDR 409
Query: 460 N-PPW 463
+ PW
Sbjct: 410 DVKPW 414
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 195/339 (57%), Gaps = 38/339 (11%)
Query: 120 SGGTEGNGDSGSGTRKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALNSRLLEIS 179
S T + +G RKR+SRW D K I +P + E D A+ RL EIS
Sbjct: 119 SASTADGSGADAGPRKRKSRWGDANDK--ITIPTAIGANVSAQELDK--YAIQVRLDEIS 174
Query: 180 RMLQSG--LPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRN 237
R L+SG +P P+ +RSPSP P YDN G R NTRE R R++L ER ++ + +K +
Sbjct: 175 RKLRSGDFVP----PDRERSPSPPPTYDNQGRRTNTREVRYRKKLEDERVALVDRQLKLD 230
Query: 238 PAFKPPADYRPPKLQK----KLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIR 293
P F+PP+DY K + K+Y+P+KE+P F GL++GPRGNT K MER++GAKI IR
Sbjct: 231 PNFRPPSDYHAIKRNQRPTEKVYLPIKEFPEIKFFGLLVGPRGNTLKTMERQSGAKISIR 290
Query: 294 GKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVD---EVLN 350
GKGSVK G+ + D + E++H +V A+ + S++ ++ ++++ E N
Sbjct: 291 GKGSVKTGKGKMDAD-----EDEEEMHCVVTADDEASVKKCIKLINQVIETAASTPEGEN 345
Query: 351 EHKRQQLRELAALNGTIRDEE--YCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHP 408
+HKR QLRELAALNGT+RD+E C+ CG GHR + CP + + + + ++C CG GH
Sbjct: 346 DHKRNQLRELAALNGTLRDDENQLCKNCGNKGHRAFECPEQRN-WTAHIICHRCGGQGHL 404
Query: 409 TIDCL-------------VKGTTGKKMDDEYQNFLAELG 434
DC GT ++ D EY N +AELG
Sbjct: 405 ARDCTQGRAGAFNGAPPGAAGTGNRQFDSEYANLMAELG 443
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 236 bits (601), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 126/279 (45%), Positives = 180/279 (64%), Gaps = 15/279 (5%)
Query: 167 EIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKER 226
E+ +LN RL EI++ L++G + E RSPSP P YDN G R+NTRE R +++L ER
Sbjct: 103 ELYSLNVRLEEITQKLRTGDVVPHHRE--RSPSPPPQYDNHGRRLNTREIRYKKKLEDER 160
Query: 227 QEIISQIIKRNPAFKPPADYR-PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERE 285
II + +K P F+ P+DYR P K Q+K+Y+P+K+YP NFIGL+IGPRG+T K ME +
Sbjct: 161 HRIIERAMKMVPGFRAPSDYRRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAK 220
Query: 286 TGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQ-- 343
+GAKI IRGKGSVKEG+ + ++ + EDLH LV A++++ + A +++ ++Q
Sbjct: 221 SGAKIAIRGKGSVKEGKGRSDPSVRGN--MEEDLHCLVTADSEDKINHAIKLIDNVIQTA 278
Query: 344 -PVDEVLNEHKRQQLRELAALNGTIRDEE--YCRLCGEPGHRQYACPSRTSTFKSDVLCK 400
V E N+ KR QLR+LA LNGT+RD+E C+ CG GHR++ CP R + +++C+
Sbjct: 279 ASVPEGQNDLKRNQLRQLATLNGTLRDDENQVCQNCGNVGHRRFDCPERIN-HTMNIVCR 337
Query: 401 ICGDGGHPTIDCLVKG----TTGKKMDDEYQNFLAELGG 435
CG GH DC V+ D EYQ+ + ELGG
Sbjct: 338 HCGSIGHIARDCPVRDQQPPMADSTADREYQSLMQELGG 376
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1
PE=3 SV=1
Length = 501
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 178/281 (63%), Gaps = 28/281 (9%)
Query: 165 DPEIQALNSRLL--EISRMLQSG-LPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARER 221
D +I AL RL EI++ + G + +R + +RSPSP P YDN G R NTRE R +E+
Sbjct: 89 DEQIAALILRLRVDEITKKITIGPIEFTER-DRERSPSPPPTYDNNGKRSNTREQRIKEK 147
Query: 222 LNKERQEIISQIIKRNPAFKPPADYRPP--KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQ 279
L KER +++ + NP +KPP+DY+PP K +K+YIP+K +P YNFIGLIIGPRGNTQ
Sbjct: 148 LQKERHQLVVTAQQINPTYKPPSDYQPPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQ 207
Query: 280 KRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVE 339
KRME+E+GAKI IRGKGS ++G + K EN++LHVL+ A+T + L+ A +V
Sbjct: 208 KRMEKESGAKIAIRGKGSSRDG-----KPTKLQFQENDELHVLLTADTVDQLDKAEVLVR 262
Query: 340 KLLQPVDEVLNEHKRQQLRELAALNGTIRDE-EYCRLCGEPGHRQYACPSRTSTFKSDVL 398
+ L PV+E NEHKRQQLRELA +NGT+R+ Y G+R + D+
Sbjct: 263 EFLIPVEEGKNEHKRQQLRELAEMNGTLRERPAYM------GNRSWT--------PVDIK 308
Query: 399 CKICGDGGHPTIDCLVKGTTGKK--MDDEYQNFLAELGGTL 437
C CG+ HP+ DC ++ + ++ EYQ F+ E+ +L
Sbjct: 309 CVQCGETSHPSSDCPLRSNESNQQYIESEYQKFIDEMSKSL 349
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BBP PE=3 SV=1
Length = 605
Score = 216 bits (551), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 153/407 (37%), Positives = 220/407 (54%), Gaps = 41/407 (10%)
Query: 94 KDQSGGEEETTSRRRRRSRWDPPPSESGGTEG---------NGDSGSGTR--KRRSRWAD 142
KD S TT RRR R+D P++ G D G+ + +R+ RW+
Sbjct: 13 KDTSSSGSNTTPLARRR-RFDEGPADPGSAPHLDSFVVPPTRHDDGTKRQPGRRKQRWSH 71
Query: 143 DEPK--PVIQLPDFMKDFTGGIE-FDPEIQALNSRLLEISRMLQSG--LPLDDRPEGQRS 197
E K ++Q+P + TG + E A+ R+ EIS+ L+ G +P PE +RS
Sbjct: 72 GENKVADLLQMPTAL---TGHLTPEQAEAYAIYYRIEEISQQLRLGDIVP----PEDERS 124
Query: 198 PSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY-RPPKLQKKLY 256
PSP P YD+MG R NTR+ R +L +ER +I + + P ++PP DY +P K Q+ +Y
Sbjct: 125 PSPPPQYDSMGKRTNTRDARYTRQLEEERHRLIERAQRLIPNYRPPVDYHKPAKTQEVVY 184
Query: 257 IPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSEN 316
IP+ EYP NFIG ++G RG T K+ME+E+GAKI IRG+GSVK+G+ + D+ +
Sbjct: 185 IPVNEYPDINFIGQLLGARGKTLKKMEQESGAKICIRGRGSVKQGK--GRTDIPFQSTAE 242
Query: 317 EDLHVLVEAETQESLEGAAAMVEKLLQ---PVDEVLNEHKRQQLRELAALNGTIRDEEYC 373
+DLH L+ +E +E + A +V++++ V E NE KR QLRELAALNGT+RD+E
Sbjct: 243 DDLHCLIISEDEEKIARAVQLVQQVIDTAASVPEGQNELKRSQLRELAALNGTLRDDE-- 300
Query: 374 RLCGEP----GHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKGT---TGKKMDDEY 426
G P G R + F S ++C ICG GH DCL KGT T + D EY
Sbjct: 301 NYGGAPQSSSGDEMDDRNKRRNNFMSSIVCHICGSKGHFARDCLEKGTNAGTSENADREY 360
Query: 427 QNFLAELGGTLPESASKQSTTLALGPGSGSSGSNPPWANNSGSSGTP 473
+ EL G + Q ++A P + + PP +GS+ P
Sbjct: 361 DALMRELQGEGVIDTASQQQSIAQNPNTNNVSKLPPAV--TGSNAAP 405
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 209/378 (55%), Gaps = 53/378 (14%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQ-----PVDEVLNEHKRQQLRELAALN 364
+ P E+E LH LV A T E+++ A + +L+ P D+ N+ ++ QLRELA LN
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQ--NDLRKMQLRELARLN 251
Query: 365 GTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK-------GT 417
GT+R+++ L R + S T + + +C CG GH DC +
Sbjct: 252 GTLREDDNRIL------RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQ 304
Query: 418 TGKKMDDEYQNFLAELGGTLPESASKQSTTLALGPGS----------------------G 455
+MD EY + +AELG P AS ST+ GP +
Sbjct: 305 DKARMDKEYLSLMAELG-EAPVPASVGSTS---GPATTPLASAPRPAAPANNPPPPSLMS 360
Query: 456 SSGSNPPWANNSGSSGTP 473
++ S PPW N+ S P
Sbjct: 361 TTQSRPPWMNSGPSESRP 378
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 209/378 (55%), Gaps = 53/378 (14%)
Query: 134 RKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPE-IQALNSRLLEISRMLQSG-LPLDDR 191
+++RSRW D + +P G+ + E + ++ +++R L++G L +
Sbjct: 16 KRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPN 75
Query: 192 PEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP-- 249
PE RSPSPEPIY++ G R+NTRE+R R++L +ER +I++++ NP FKPPADY+PP
Sbjct: 76 PE-DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPAT 134
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
++ K+ IP EYP NF+GL+IGPRGNT K +E+E AKI+IRGKGSVKEG++ +K D
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRK-DG 193
Query: 310 KPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQ-----PVDEVLNEHKRQQLRELAALN 364
+ P E+E LH LV A T E+++ A + +L+ P D+ N+ ++ QLRELA LN
Sbjct: 194 QMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETPEDQ--NDLRKMQLRELARLN 251
Query: 365 GTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK-------GT 417
GT+R+++ L R + S T + + +C CG GH DC +
Sbjct: 252 GTLREDDNRIL------RPWQS-SETRSITNTTVCTKCGGAGHIASDCKFQRPGDPQSAQ 304
Query: 418 TGKKMDDEYQNFLAELGGTLPESASKQSTTLALGPGS----------------------G 455
+MD EY + +AELG P AS ST+ GP +
Sbjct: 305 DKARMDKEYLSLMAELGEA-PVPASVGSTS---GPATTPLASAPRPAAPASNPPPPSLMS 360
Query: 456 SSGSNPPWANNSGSSGTP 473
++ S PPW N+ S P
Sbjct: 361 TTQSRPPWMNSGPSENRP 378
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 169/311 (54%), Gaps = 15/311 (4%)
Query: 174 RLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQI 233
R+ EIS +++S + RSPSP P+YD G RINTRE +++L ER +++ +
Sbjct: 57 RIQEISSIIKSH-SFEVPNARNRSPSPPPVYDAEGKRINTREQLYKKKLMNERFKLVEVV 115
Query: 234 IKRNPAFKPPADY-RPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVI 292
K P + P DY RP Q+K YIP+ +YP NF+GL++GPRG T ++M+ ++G KI I
Sbjct: 116 SKLIPGYSAPKDYKRPTTFQEKYYIPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAI 175
Query: 293 RGKGSVKEGRLQQKRDLKPDPSENED-LHVLVEAETQESLE-GAAAMVEKLLQPVD--EV 348
RG+GSVKEG+ DL P + D LH L+ A+ +E +E G A +++ V E
Sbjct: 176 RGRGSVKEGKTSS--DLPPGAMDFSDPLHCLIIADNEEKIENGIKACRNIVIKAVTSPEG 233
Query: 349 LNEHKRQQLRELAALNGTIRDEEY-CRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGH 407
NE KR QLRELA LNGT+R++ C CG+ GH++Y CP R TF ++C+ C GH
Sbjct: 234 QNELKRGQLRELAELNGTLREDNRPCATCGQQGHKKYECPHR-ETFAMKIICRRCNQPGH 292
Query: 408 PTIDCLVKGTTGKKM-DDEYQNFL----AELGGTLPESASKQSTTLALGPGSGSSGSNPP 462
DC GK++ Y N + P + S+ T GS N
Sbjct: 293 TIRDCTSDSNYGKQIHSSRYNNEMPYHRTSTAVDQPSAYSRYGYTPRNHNGSSRFNDNSK 352
Query: 463 WANNSGSSGTP 473
+ NN TP
Sbjct: 353 YLNNGNKRATP 363
>sp|Q750X2|BBP_ASHGO Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2
Length = 507
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/306 (39%), Positives = 172/306 (56%), Gaps = 17/306 (5%)
Query: 113 WDPPPSESGGTEGNGDSGSGTRKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDPEIQALN 172
WD + G + + DS G + R D P V QLP + + + +
Sbjct: 18 WDWDIMDRGRSSNSYDSLWGGKAR------DNPI-VSQLPLQYRIRSALTQEQQTAYQVM 70
Query: 173 SRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQ 232
R+ EI+ L++ L+ RS SP P+YD+ G R NTRE+R R++L +ER ++
Sbjct: 71 YRIQEITIKLRTN-DLNPPTSRYRSLSPPPVYDSQGKRTNTREHRYRKKLEEERHRLVEI 129
Query: 233 IIKRNPAFKPPADYR-PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIV 291
+K P F P DYR P K Q K YIP+ +YP NF+GL++GPRGNT K++++++G KIV
Sbjct: 130 ALKMIPHFIAPDDYRRPSKFQDKYYIPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIV 189
Query: 292 IRGKGSVKEGRLQQKRDL-KPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVD---E 347
IRG+GSVKEG+ DL K + NE LH ++ A+T+E + VE ++ E
Sbjct: 190 IRGRGSVKEGK--AATDLPKGAMNMNEPLHCVISADTEEKIPLGINAVESIIIKAITSPE 247
Query: 348 VLNEHKRQQLRELAALNGTIRDEEY-CRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGG 406
N+ KR QLRELA LNGT+R++ C LCGE GH+++ C S S V+C+ C G
Sbjct: 248 GQNDLKRGQLRELAVLNGTLREDNRPCPLCGEQGHKKWECSSNPS-LSMTVICQRCNQPG 306
Query: 407 HPTIDC 412
H DC
Sbjct: 307 HAARDC 312
>sp|Q12186|BBP_YEAST Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1
Length = 476
Score = 187 bits (474), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 139/223 (62%), Gaps = 8/223 (3%)
Query: 196 RSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADY-RPPKLQKK 254
RSPSP P+YD G R NTRE R R++L ER +++ +K P F PP DY RP K Q K
Sbjct: 92 RSPSPPPVYDAQGKRTNTREQRYRKKLEDERIKLVEIALKTIPYFVPPDDYKRPTKFQDK 151
Query: 255 LYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPS 314
YIP+ +YP NF+GL++GPRG T ++++ ++ KI IRG+GSVKEG+ DL P
Sbjct: 152 YYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGK--NASDLPPGAM 209
Query: 315 ENED-LHVLVEAETQESLEGAAAMVEKLLQPVD---EVLNEHKRQQLRELAALNGTIRDE 370
ED LH L+ A++++ ++ + + ++ E N+ KR QLRELA LNGT+R++
Sbjct: 210 NFEDPLHCLIIADSEDKIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRED 269
Query: 371 EY-CRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDC 412
C +CG H++Y CP+R ++CKICG GH + DC
Sbjct: 270 NRPCPICGLKDHKRYDCPNRKIPNIQGIVCKICGQTGHFSRDC 312
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 146/254 (57%), Gaps = 28/254 (11%)
Query: 188 LDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYR 247
+D+ +R PSP P YD G R NTRE R E L KER E++ + P++YR
Sbjct: 84 VDETDHYKRDPSPPPKYDKNGNRTNTRERRVTEALEKERHELVELAASSIKNYMIPSNYR 143
Query: 248 -PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRL--- 303
P + ++LY+P+K+YP NF+G +IGPRGNT K+++ ++GA++ IRGKGSVKEG+
Sbjct: 144 RPSRTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDG 203
Query: 304 ----QQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVD---EVLNEHKRQQ 356
Q D++ +DLHVL+ A++ + A +V +++ + + +N KR Q
Sbjct: 204 FGSSQTGTDIQ------DDLHVLITADSPLKISKAVKLVNEIIDKLIFSPQGMNFMKRDQ 257
Query: 357 LRELAALNGTIRDEE-YCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK 415
L+ELA LNGT+R+ + + E +Q ++ ++CKICG+ GH DC K
Sbjct: 258 LKELAVLNGTLRETKPFDPEAHEKKQQQQMDITK-------IVCKICGNIGHIARDC--K 308
Query: 416 GTTGKK-MDDEYQN 428
GK+ +DD +N
Sbjct: 309 QNNGKRPLDDNAEN 322
>sp|Q6BSP4|BBP_DEBHA Branchpoint-bridging protein OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BBP PE=3 SV=2
Length = 518
Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 104/306 (33%), Positives = 159/306 (51%), Gaps = 27/306 (8%)
Query: 177 EISRMLQSGLPLDDRPEGQRSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQIIKR 236
E+ +L SG + + P +R PSP P YD G R NTRE R + L KER ++
Sbjct: 88 EVLSLLPSG-NIANNPNYEREPSPPPKYDAAGNRSNTREARTKLALEKERHYLVEVAAGS 146
Query: 237 NPAFKPPADYRPP-KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGK 295
+ P DYR P K +K+YIP+K+YP NF+GL++GPRGNT ++++ ++GA++ IRGK
Sbjct: 147 IKNYMSPIDYRKPVKTYEKIYIPVKDYPDINFVGLLLGPRGNTLRQLQEDSGARLAIRGK 206
Query: 296 GSVKEGRLQQKRDLKP-------------DPSENEDLHVLVEAETQESLEGAAAMVEKLL 342
GSVK+G+ + + S N+DLHV++ +++Q + A + +++
Sbjct: 207 GSVKDGKSTSSNNDDDDSNSSLSFSNPNLNSSGNDDLHVVITSDSQSKIAKAIKLTNQVI 266
Query: 343 Q-----PVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPSRTSTFKSDV 397
+ PV + N+ KR QLRELA LNGT+R+ + + R SR S +
Sbjct: 267 EKAISSPVGQ--NDLKRGQLRELAILNGTLRETKPYNPETQQSRR-----SRPGLDVSQL 319
Query: 398 LCKICGDGGHPTIDCLVKGTTGKKMDDEYQNFLAELGGTLPESASKQSTTLALGPGSGSS 457
+CK CG GH DC +GT+ + Q+ T P S S++ +G
Sbjct: 320 VCKSCGKVGHFARDCKFRGTSDGNNNPIVQDQADSYQQTAPYSDSRRQREEEDPRNNGRE 379
Query: 458 GSNPPW 463
PPW
Sbjct: 380 EILPPW 385
>sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660 OS=Arabidopsis thaliana
GN=At1g09660 PE=2 SV=1
Length = 298
Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 90/131 (68%), Gaps = 8/131 (6%)
Query: 248 PPKLQK--KLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQ 305
PP ++K +L +P+ +YP YNF+G I+GPRGN+ KR+E T ++ IRG+GSVK+ ++
Sbjct: 142 PPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEE 201
Query: 306 KRDLKPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRE 359
K KP E LHVL+EAE E LE A +E LL+P+DE ++ +KR+QL+E
Sbjct: 202 KLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKE 261
Query: 360 LAALNGTIRDE 370
LAALNGT+R+E
Sbjct: 262 LAALNGTLREE 272
>sp|Q6P104|QKIB_DANRE Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1
Length = 319
Score = 116 bits (290), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q91XU1|QKI_RAT Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2
Length = 341
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q6IRN2|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1
Length = 342
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 82 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 141
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 142 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 201
Query: 364 NGTIRD 369
NGT RD
Sbjct: 202 NGTYRD 207
>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1
Length = 341
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1
Length = 341
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q96PU8|QKI_HUMAN Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1
Length = 341
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q5W9D6|QKI_HORSE Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1
Length = 341
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q7JJZ8|QKI_FELCA Protein quaking OS=Felis catus GN=QKI PE=2 SV=1
Length = 341
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q9GMY1|QKI_CANFA Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1
Length = 341
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q5W9D7|QKI_BOVIN Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1
Length = 341
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2
Length = 341
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 82 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 141
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 142 KPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 201
Query: 364 NGTIRD 369
NGT RD
Sbjct: 202 NGTYRD 207
>sp|Q9YH18|QKI_CHICK Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2
Length = 340
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
+LQ+KLY+P+KEYP +NF+G I+GPRG T K++E ETG KI++RGKGS+++ + +++
Sbjct: 81 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRG 140
Query: 310 KPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363
KP+ NEDLHVL+ E ++ L+ A V+KLL P E + K+ QL ELA L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAIL 200
Query: 364 NGTIRD 369
NGT RD
Sbjct: 201 NGTYRD 206
>sp|Q6P0D0|QKIA_DANRE Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2
Length = 341
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 100/160 (62%), Gaps = 10/160 (6%)
Query: 220 ERLNKERQEI----ISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPR 275
E +N+ R+++ ++ ++ ++P P LQ+KL++P+KEYP YNF+G I+GPR
Sbjct: 47 EEINRVRKDMYNDSVNGLVDKHPLELPEPVGPIVHLQEKLFVPVKEYPDYNFVGRILGPR 106
Query: 276 GNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAETQES---- 330
G T K++E ETG KI++RG+ S+++ + +++ KP+ NEDLHVL+ E ++
Sbjct: 107 GLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDTQTRAEI 166
Query: 331 -LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRD 369
+ A V+KLL P E + K+ QL ELA LNGT RD
Sbjct: 167 KMRRAVEEVKKLLVPAAEGEDNLKKMQLMELAILNGTYRD 206
>sp|O01367|HOW_DROME Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1
Length = 405
Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 98/161 (60%), Gaps = 8/161 (4%)
Query: 234 IKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIR 293
+K+ P P + + +K+Y+P++E+P +NF+G I+GPRG T K++E+ETG KI++R
Sbjct: 120 VKKEPLTLPEPEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVR 179
Query: 294 GKGSVKEGRLQQKRDLKPDPSE-NEDLHVLVEAETQES-----LEGAAAMVEKLLQPVDE 347
GKGS+++ + + KP+ ++DLHVL+ E E+ L A A V+KLL P E
Sbjct: 180 GKGSMRDKKKEDANRGKPNWEHLSDDLHVLITVEDTENRATVKLAQAVAEVQKLLVPQAE 239
Query: 348 VLNEHKRQQLRELAALNGTIRD--EEYCRLCGEPGHRQYAC 386
+E K++QL ELA +NGT RD + +C E R A
Sbjct: 240 GEDELKKRQLMELAIINGTYRDTTAKSVAVCDEEWRRLVAA 280
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 81/123 (65%), Gaps = 6/123 (4%)
Query: 254 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDP 313
+L +P+ YP +NF+G I+GPRGN+ KR+E TG ++ IRGKGS+K+ + K KP
Sbjct: 137 RLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGY 196
Query: 314 SENED-LHVLVEAE-----TQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 367
D LH+L+EAE L A ++E+LL+PVDE + +KRQQLRELA LN T+
Sbjct: 197 EHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQDFYKRQQLRELAMLNSTL 256
Query: 368 RDE 370
R++
Sbjct: 257 RED 259
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis
elegans GN=gld-1 PE=1 SV=1
Length = 463
Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 6/124 (4%)
Query: 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLK 310
+ +K+Y+P EYP YNF+G I+GPRG T K++E++TG KI++RGKGS+++ + K
Sbjct: 205 ITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGK 264
Query: 311 PDPSENE-DLHVLVEAETQES-----LEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALN 364
+ E DLHVLV+ E E+ L+ A V+KLL P E +E KR+QL ELA +N
Sbjct: 265 ANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIIN 324
Query: 365 GTIR 368
GT R
Sbjct: 325 GTYR 328
>sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620 OS=Arabidopsis thaliana
GN=At3g08620 PE=2 SV=1
Length = 283
Score = 106 bits (265), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 85/133 (63%), Gaps = 7/133 (5%)
Query: 243 PADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGR 302
P+ Y P K +L +P+ YP +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+
Sbjct: 128 PSSY-PVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPE 186
Query: 303 LQQKRDLKPDPSE-NEDLHVLVEAE-----TQESLEGAAAMVEKLLQPVDEVLNEHKRQQ 356
++K KP NE LH+L+EA+ L A ++E+L++PVDE + KRQQ
Sbjct: 187 KEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQ 246
Query: 357 LRELAALNGTIRD 369
LRELA LN +R+
Sbjct: 247 LRELALLNSNLRE 259
>sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610 OS=Arabidopsis thaliana
GN=At2g38610 PE=1 SV=1
Length = 286
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 84/135 (62%), Gaps = 7/135 (5%)
Query: 243 PADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGR 302
P+ Y ++ + L IP+ YP +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+
Sbjct: 129 PSSYTVKRILR-LEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPE 187
Query: 303 LQQKRDLKPDPSE-NEDLHVLVEAE-----TQESLEGAAAMVEKLLQPVDEVLNEHKRQQ 356
+ K +P NE LH+L+EA+ + L A ++E+LL+PVDE + KRQQ
Sbjct: 188 KEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQ 247
Query: 357 LRELAALNGTIRDEE 371
LRELA LN EE
Sbjct: 248 LRELALLNSNNLREE 262
>sp|Q0WLR1|QKIL1_ARATH KH domain-containing protein At4g26480 OS=Arabidopsis thaliana
GN=At4g26480 PE=2 SV=1
Length = 308
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 79/120 (65%), Gaps = 6/120 (5%)
Query: 257 IPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE- 315
IP+ +YP YNF+G ++GPRGN+ KR+E T +++IRG+GS+K+ + KP
Sbjct: 166 IPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHL 225
Query: 316 NEDLHVLVEAE-----TQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDE 370
NE LH+LVEAE L A +++ LL PV+E + +K+QQLRELA LNG++R+E
Sbjct: 226 NEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREE 285
>sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140 OS=Arabidopsis thaliana
GN=At5g56140 PE=2 SV=1
Length = 315
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 79/120 (65%), Gaps = 6/120 (5%)
Query: 257 IPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSE- 315
IP+ YP +NF+G ++GPRGN+ KR+E T +++IRG+GS+K+ ++ KP
Sbjct: 172 IPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHL 231
Query: 316 NEDLHVLVEAE-----TQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDE 370
NE LH+LVEAE L A +++ LL P++E + +K+QQLRELA LNGT+R+E
Sbjct: 232 NEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREE 291
>sp|Q0VFL3|KHDR2_XENTR KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1
Length = 345
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 85/126 (67%), Gaps = 12/126 (9%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+++ +++++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRD-KIKEEELR 117
Query: 310 KPDPSEN----EDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
K D +++ ++LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 118 KSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>sp|Q08BJ2|KHDR2_DANRE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1
Length = 346
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%), Gaps = 12/126 (9%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+++YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K N DLHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSN-DLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 10/125 (8%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNGT 366
LNG
Sbjct: 273 YLNGV 277
>sp|Q07666|KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1
Length = 443
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 10/125 (8%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNGT 366
LNG
Sbjct: 273 YLNGV 277
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 10/125 (8%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 214
Query: 310 KPDPSE---NEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 362 ALNGT 366
LNG
Sbjct: 273 YLNGV 277
>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%), Gaps = 12/126 (9%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>sp|Q5VWX1|KHDR2_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1
Length = 349
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%), Gaps = 12/126 (9%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 80/126 (63%), Gaps = 12/126 (9%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQ 305
KL +++ IP+K+YP +NF+G ++GPRGN+ KR++ ETGAK+ I GKGS+ KE L++
Sbjct: 59 KLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRK 118
Query: 306 KRDLKPDPSENEDLHVLVEA-----ETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLREL 360
+ K +E LHVL+E E + A ++K L P + +E +++QLREL
Sbjct: 119 SGEAKYAHLSDE-LHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLREL 175
Query: 361 AALNGT 366
+ LNG+
Sbjct: 176 SYLNGS 181
>sp|Q8UUW7|KHDR1_CHICK KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1
Length = 433
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 10/125 (8%)
Query: 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDL 309
KL++++ IP+K+YP +NF+G I+GP+GNT KR++ ETGAKI + GKGS+++ +++
Sbjct: 138 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRK 197
Query: 310 KPDPSE---NEDLHVLVE-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELA 361
DP N DLHV +E E + A V+K L P +++++ ++Q EL+
Sbjct: 198 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 255
Query: 362 ALNGT 366
LNG
Sbjct: 256 YLNGV 260
>sp|O75525|KHDR3_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1
Length = 346
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 95/174 (54%), Gaps = 23/174 (13%)
Query: 224 KERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRME 283
K+ ++ I +I +N KL +K+ IP+K++P +NF+G ++GPRGN+ KR++
Sbjct: 40 KDEEKYIDVVINKNM-----------KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQ 88
Query: 284 RETGAKIVIRGKGSV----KEGRLQQKRDLKPDPSENEDLHVLVE-----AETQESLEGA 334
ET K+ I GKGS+ KE L++ + K N+DLHVL+E AE + A
Sbjct: 89 EETLTKMSILGKGSMRDKAKEEELRKSGEAKY-FHLNDDLHVLIEVFAPPAEAYARMGHA 147
Query: 335 AAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPS 388
++K L P + +E ++ QL+EL LNG + + + G+P R P+
Sbjct: 148 LEEIKKFLIP--DYNDEIRQAQLQELTYLNGGSENADVPVVRGKPTLRTRGVPA 199
>sp|Q9R226|KHDR3_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 24/167 (14%)
Query: 209 IRINTREYRARER-LNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNF 267
+R+ RE ++ KE ++ I +I +N KL +K+ IP+K++P +NF
Sbjct: 24 LRLVNREIEKFQKGEGKEEEKYIDVVINKNM-----------KLGQKVLIPVKQFPKFNF 72
Query: 268 IGLIIGPRGNTQKRMERETGAKIVIRGKGSV----KEGRLQQKRDLKPDPSENEDLHVLV 323
+G ++GPRGN+ KR++ ET K+ I GKGS+ KE L++ + K N+DLHVL+
Sbjct: 73 VGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKY-FHLNDDLHVLI 131
Query: 324 E-----AETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNG 365
E AE + A ++K L P + +E ++ QL+EL LNG
Sbjct: 132 EVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>sp|Q9JLP1|KHDR3_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 23/151 (15%)
Query: 224 KERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRME 283
K+ ++ I +I +N KL +K+ IP+K++P +NF+G ++GPRGN+ KR++
Sbjct: 40 KDEEKYIDVVINKNM-----------KLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQ 88
Query: 284 RETGAKIVIRGKGSV----KEGRLQQKRDLKPDPSENEDLHVLVE-----AETQESLEGA 334
ET K+ I GKGS+ KE L++ + K N+DLHVL+E AE + A
Sbjct: 89 EETLTKMSILGKGSMRDKAKEEELRKSGEAKY-FHLNDDLHVLIEVFAPPAEAYARMGHA 147
Query: 335 AAMVEKLLQPVDEVLNEHKRQQLRELAALNG 365
++K L P + +E ++ QL+EL LNG
Sbjct: 148 LEDIKKFLIP--DYNDEIRQAQLQELTYLNG 176
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 465 NNSGSSGTPGHPGLGSNGAKPIKELDDTN-LYIGYLPPTLDDDGLIRLFSTFGDIVMAKV 523
N+S G G+ G GA+ + +D +N +Y+G L +DD L LFS G++V AKV
Sbjct: 182 NSSYGGGRDGNSSFG--GARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKV 239
Query: 524 IKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGKPPQ 573
+ DR +G S+G+GFV Y+ + N+AI S+NG L+GR+I V A + P+
Sbjct: 240 VYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPR 289
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
+D L++G LP ++D L LF G++ + +VI D+++G S+G+GFV + + A
Sbjct: 86 EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAA 145
Query: 550 IASMNGYRLEGRTIAV 565
NGY ++GR I V
Sbjct: 146 EQQFNGYEIDGRAIRV 161
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 465 NNSGSSGTPGHPGLGSNGAKPIKELDDTN-LYIGYLPPTLDDDGLIRLFSTFGDIVMAKV 523
N+S G G+ G GA+ + +D +N +Y+G L +DD L LFS G++V AKV
Sbjct: 181 NSSYGGGRDGNSSFG--GARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKV 238
Query: 524 IKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGKPPQ 573
+ DR +G S+G+GFV Y+ + N+AI S+NG L+GR+I V A + P+
Sbjct: 239 VYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPR 288
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNA 549
+D L++G LP ++D L LF G++ M +VI D++TG S+G+GFV + + A
Sbjct: 85 EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAA 144
Query: 550 IASMNGYRLEGRTIAV 565
NGY ++GR I V
Sbjct: 145 EQQFNGYEIDGRAIRV 160
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,546,130
Number of Sequences: 539616
Number of extensions: 20149766
Number of successful extensions: 209792
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 3962
Number of HSP's that attempted gapping in prelim test: 102119
Number of HSP's gapped (non-prelim): 45529
length of query: 797
length of database: 191,569,459
effective HSP length: 126
effective length of query: 671
effective length of database: 123,577,843
effective search space: 82920732653
effective search space used: 82920732653
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)