Query 040243
Match_columns 797
No_of_seqs 695 out of 3229
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 7.1E-39 2.4E-43 306.1 6.6 125 250-374 1-131 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 3.6E-36 1.2E-40 285.9 7.4 122 249-371 5-129 (131)
3 4fxw_B Splicing factor 1; UHM, 100.0 3.6E-32 1.2E-36 252.5 11.6 120 130-249 4-124 (124)
4 2yqr_A KIAA0907 protein; struc 99.9 7.7E-27 2.6E-31 217.9 10.1 101 249-356 10-111 (119)
5 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.2E-19 1.4E-23 167.9 14.4 139 396-568 2-140 (140)
6 4fxv_A ELAV-like protein 1; RN 99.8 2.9E-19 9.8E-24 161.4 11.1 82 489-570 17-98 (99)
7 2cpz_A CUG triplet repeat RNA- 99.8 2.6E-18 8.9E-23 158.0 13.9 89 487-575 21-109 (115)
8 2cq0_A Eukaryotic translation 99.8 3.5E-18 1.2E-22 153.9 13.4 89 487-575 11-99 (103)
9 2dgo_A Cytotoxic granule-assoc 99.8 1E-17 3.5E-22 153.9 16.0 89 487-575 11-99 (115)
10 2e5h_A Zinc finger CCHC-type a 99.8 5.7E-18 2E-22 149.7 12.3 82 488-569 13-94 (94)
11 3s8s_A Histone-lysine N-methyl 99.7 4.4E-18 1.5E-22 156.7 11.7 83 490-572 5-87 (110)
12 2dnm_A SRP46 splicing factor; 99.7 5.5E-18 1.9E-22 152.7 11.4 89 487-575 9-97 (103)
13 2cqd_A RNA-binding region cont 99.7 2.2E-17 7.7E-22 152.0 15.2 88 487-575 13-100 (116)
14 1x5u_A Splicing factor 3B subu 99.7 1E-17 3.5E-22 151.2 12.5 88 487-574 11-98 (105)
15 3p5t_L Cleavage and polyadenyl 99.7 1.6E-18 5.4E-23 152.9 6.8 82 492-573 2-85 (90)
16 2cqc_A Arginine/serine-rich sp 99.7 1.4E-17 4.6E-22 147.3 12.2 83 488-570 12-94 (95)
17 2do0_A HnRNP M, heterogeneous 99.7 3.6E-17 1.2E-21 149.8 15.4 84 488-572 12-95 (114)
18 2dgs_A DAZ-associated protein 99.7 1.7E-17 5.8E-22 148.4 12.8 87 488-575 7-93 (99)
19 2do4_A Squamous cell carcinoma 99.7 2.4E-17 8.2E-22 147.6 13.8 86 487-573 13-98 (100)
20 1x4h_A RNA-binding protein 28; 99.7 2.1E-17 7E-22 150.5 13.5 89 487-575 11-105 (111)
21 2dng_A Eukaryotic translation 99.7 2.7E-17 9.1E-22 148.3 14.0 87 487-575 11-97 (103)
22 3bs9_A Nucleolysin TIA-1 isofo 99.7 1E-17 3.6E-22 145.7 10.8 83 489-571 4-86 (87)
23 2lxi_A RNA-binding protein 10; 99.7 3E-18 1E-22 152.1 7.3 83 491-573 1-85 (91)
24 2d9p_A Polyadenylate-binding p 99.7 2.1E-17 7.2E-22 148.8 12.9 87 487-575 11-97 (103)
25 2dnz_A Probable RNA-binding pr 99.7 1.9E-17 6.6E-22 146.5 12.4 86 490-575 4-89 (95)
26 2cph_A RNA binding motif prote 99.7 1.9E-17 6.5E-22 149.8 12.6 89 487-575 11-101 (107)
27 1whw_A Hypothetical protein ri 99.7 2.2E-17 7.6E-22 147.4 12.8 86 489-574 6-91 (99)
28 3md1_A Nuclear and cytoplasmic 99.7 1.9E-17 6.3E-22 142.8 11.7 81 492-572 2-82 (83)
29 2dh8_A DAZ-associated protein 99.7 1.4E-17 4.6E-22 150.6 11.3 87 487-574 12-98 (105)
30 2cpe_A RNA-binding protein EWS 99.7 1.7E-17 5.9E-22 151.9 11.9 89 487-575 11-107 (113)
31 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.4E-17 4.8E-22 149.5 10.8 87 489-575 10-96 (102)
32 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-17 5.1E-22 150.4 11.0 89 487-575 9-100 (106)
33 2dnh_A Bruno-like 5, RNA bindi 99.7 5E-17 1.7E-21 146.7 13.7 87 488-575 12-101 (105)
34 1x5s_A Cold-inducible RNA-bind 99.7 1.8E-17 6.3E-22 148.8 10.7 87 489-575 10-96 (102)
35 1p27_B RNA-binding protein 8A; 99.7 1.9E-17 6.5E-22 149.7 10.8 86 487-572 19-104 (106)
36 1wi8_A EIF-4B, eukaryotic tran 99.7 4.8E-17 1.7E-21 146.9 13.3 86 487-574 11-97 (104)
37 2khc_A Testis-specific RNP-typ 99.7 5.6E-17 1.9E-21 149.6 13.8 83 487-569 36-118 (118)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.2E-17 7.4E-22 143.1 10.3 81 489-569 5-85 (85)
39 2cpf_A RNA binding motif prote 99.7 2.8E-17 9.7E-22 146.5 11.3 86 490-575 4-92 (98)
40 2lkz_A RNA-binding protein 5; 99.7 7.3E-18 2.5E-22 151.5 7.2 82 489-570 7-94 (95)
41 2cq3_A RNA-binding protein 9; 99.7 9.2E-17 3.1E-21 144.6 14.2 87 487-575 11-97 (103)
42 2ywk_A Putative RNA-binding pr 99.7 2.5E-17 8.4E-22 145.9 10.2 83 487-570 12-94 (95)
43 2m2b_A RNA-binding protein 10; 99.7 3E-17 1E-21 154.9 11.4 87 487-574 19-111 (131)
44 1x5t_A Splicing factor 3B subu 99.7 2.8E-17 9.6E-22 145.8 10.4 86 490-575 4-90 (96)
45 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.1E-16 3.6E-21 144.2 14.1 86 487-574 11-96 (103)
46 1x4a_A Splicing factor, argini 99.7 1.4E-16 4.9E-21 144.9 14.9 85 487-574 18-102 (109)
47 2kxn_B Transformer-2 protein h 99.7 2.5E-17 8.5E-22 155.7 10.1 85 488-572 43-127 (129)
48 2x1f_A MRNA 3'-END-processing 99.7 3.7E-17 1.3E-21 145.5 10.6 83 491-573 2-84 (96)
49 2cqg_A TDP-43, TAR DNA-binding 99.7 1.4E-16 4.9E-21 143.3 14.2 87 487-575 11-97 (103)
50 2la6_A RNA-binding protein FUS 99.7 4.3E-17 1.5E-21 145.9 10.7 82 488-569 10-99 (99)
51 2fy1_A RNA-binding motif prote 99.7 7.3E-17 2.5E-21 149.5 12.4 86 488-574 4-89 (116)
52 1u6f_A Tcubp1, RNA-binding pro 99.7 9.5E-17 3.2E-21 152.2 13.3 89 487-575 38-126 (139)
53 2cqp_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 146.0 9.5 83 489-571 13-95 (98)
54 3ns6_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 149.3 7.7 81 490-570 5-92 (100)
55 1oo0_B CG8781-PA, drosophila Y 99.7 4.3E-17 1.5E-21 148.5 10.2 86 487-572 22-107 (110)
56 2dhg_A TRNA selenocysteine ass 99.7 7.5E-17 2.6E-21 145.3 11.6 88 487-575 5-94 (104)
57 4f25_A Polyadenylate-binding p 99.7 5.9E-17 2E-21 149.6 11.1 81 491-573 5-85 (115)
58 2kt5_A RNA and export factor-b 99.7 3.6E-16 1.2E-20 145.7 16.4 87 488-575 32-118 (124)
59 2div_A TRNA selenocysteine ass 99.7 6.1E-17 2.1E-21 144.6 10.7 84 489-572 7-95 (99)
60 3n9u_C Cleavage and polyadenyl 99.7 5.3E-17 1.8E-21 158.6 10.9 82 489-570 53-136 (156)
61 3s7r_A Heterogeneous nuclear r 99.7 9.3E-17 3.2E-21 140.0 11.3 81 487-568 7-87 (87)
62 2jrs_A RNA-binding protein 39; 99.7 8.4E-17 2.9E-21 147.2 11.2 84 488-571 23-106 (108)
63 2cpi_A CCR4-NOT transcription 99.7 1.1E-16 3.6E-21 146.9 11.7 87 487-573 11-103 (111)
64 2lea_A Serine/arginine-rich sp 99.7 4.1E-17 1.4E-21 155.3 8.7 88 487-574 43-130 (135)
65 1p1t_A Cleavage stimulation fa 99.7 3.5E-17 1.2E-21 147.2 7.7 85 488-572 5-89 (104)
66 3ucg_A Polyadenylate-binding p 99.7 1.2E-16 3.9E-21 139.6 10.6 82 489-571 4-85 (89)
67 4a8x_A RNA-binding protein wit 99.7 9E-17 3.1E-21 139.9 9.8 83 490-572 3-86 (88)
68 3ulh_A THO complex subunit 4; 99.7 1.6E-16 5.4E-21 143.9 11.3 80 489-569 27-106 (107)
69 1x4b_A Heterogeneous nuclear r 99.7 2.1E-16 7.1E-21 145.5 12.2 87 488-575 24-110 (116)
70 2fc9_A NCL protein; structure 99.7 2.7E-16 9.3E-21 141.0 12.5 84 487-574 11-94 (101)
71 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-16 5.5E-21 141.8 11.0 82 489-573 7-92 (96)
72 2ek1_A RNA-binding protein 12; 99.7 5E-17 1.7E-21 143.8 7.4 81 490-570 14-94 (95)
73 3ex7_B RNA-binding protein 8A; 99.7 1.1E-16 3.8E-21 149.2 10.2 88 487-574 18-105 (126)
74 1x5o_A RNA binding motif, sing 99.7 4.1E-16 1.4E-20 142.9 13.8 83 487-570 21-111 (114)
75 2dgv_A HnRNP M, heterogeneous 99.7 1.8E-16 6.3E-21 139.4 10.8 83 489-573 6-88 (92)
76 2cq4_A RNA binding motif prote 99.7 1.2E-16 4.1E-21 146.6 9.8 84 488-572 22-105 (114)
77 2dgw_A Probable RNA-binding pr 99.7 3.3E-16 1.1E-20 137.8 12.1 82 488-572 7-88 (91)
78 2rs2_A Musashi-1, RNA-binding 99.7 2.1E-16 7.3E-21 144.7 11.0 85 488-573 22-106 (109)
79 1x4e_A RNA binding motif, sing 99.7 4.9E-17 1.7E-21 141.2 6.4 80 490-569 4-83 (85)
80 3q2s_C Cleavage and polyadenyl 99.7 5.7E-17 2E-21 167.8 8.0 81 490-570 67-149 (229)
81 2dis_A Unnamed protein product 99.7 2.9E-16 9.9E-21 142.6 11.5 85 489-573 6-94 (109)
82 2hgl_A HNRPF protein, heteroge 99.7 1.4E-16 4.8E-21 152.4 9.6 82 487-570 40-124 (136)
83 1wg5_A Heterogeneous nuclear r 99.7 3.8E-16 1.3E-20 141.5 12.0 83 488-572 12-95 (104)
84 2mss_A Protein (musashi1); RNA 99.7 6.9E-17 2.4E-21 136.9 6.5 75 493-568 1-75 (75)
85 1wel_A RNA-binding protein 12; 99.7 1.3E-16 4.3E-21 149.1 8.8 83 488-571 22-104 (124)
86 1x4c_A Splicing factor, argini 99.7 6.9E-16 2.4E-20 140.6 13.4 79 488-573 12-95 (108)
87 1wez_A HnRNP H', FTP-3, hetero 99.7 2.8E-16 9.6E-21 142.5 10.7 82 488-572 12-93 (102)
88 2cpy_A RNA-binding protein 12; 99.7 2E-16 6.9E-21 145.7 9.8 83 488-572 12-95 (114)
89 2ki2_A SS-DNA binding protein 99.7 3.6E-17 1.2E-21 143.5 4.6 82 492-574 2-83 (90)
90 2jwn_A Embryonic polyadenylate 99.7 3.6E-16 1.2E-20 145.4 11.5 83 489-572 34-116 (124)
91 2fc8_A NCL protein; structure 99.7 4.9E-16 1.7E-20 139.4 11.8 85 487-574 11-95 (102)
92 1s79_A Lupus LA protein; RRM, 99.7 2.1E-16 7.1E-21 143.9 9.5 81 487-569 7-87 (103)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1E-16 3.4E-21 144.2 7.3 83 488-572 16-99 (100)
94 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.3E-16 1.5E-20 150.9 12.2 85 489-573 37-121 (156)
95 2db1_A Heterogeneous nuclear r 99.7 2.8E-16 9.7E-21 145.9 10.2 83 487-571 13-98 (118)
96 2kn4_A Immunoglobulin G-bindin 99.7 3.5E-16 1.2E-20 151.3 11.1 85 489-573 68-152 (158)
97 1uaw_A Mouse-musashi-1; RNP-ty 99.6 9.5E-17 3.2E-21 136.4 5.9 76 492-568 1-76 (77)
98 1x4d_A Matrin 3; structural ge 99.6 5.8E-16 2E-20 141.1 10.6 81 488-574 12-95 (102)
99 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.1E-16 2.1E-20 151.6 11.0 87 487-573 68-154 (165)
100 2nlw_A Eukaryotic translation 99.6 6.2E-16 2.1E-20 140.4 10.0 82 488-571 12-100 (105)
101 2cq1_A PTB-like protein L; RRM 99.6 2.2E-15 7.5E-20 136.9 13.1 82 488-575 12-95 (101)
102 1sjq_A Polypyrimidine tract-bi 99.6 5.2E-16 1.8E-20 142.1 8.9 80 489-574 14-95 (105)
103 2err_A Ataxin-2-binding protei 99.6 6.3E-16 2.2E-20 141.4 9.3 83 487-571 25-107 (109)
104 1why_A Hypothetical protein ri 99.6 1.9E-15 6.5E-20 134.7 11.9 79 489-573 15-95 (97)
105 1fj7_A Nucleolin RBD1, protein 99.6 1.8E-16 6E-21 142.2 5.2 83 489-573 15-97 (101)
106 2e5j_A Methenyltetrahydrofolat 99.6 1.5E-15 5.1E-20 135.5 11.2 80 488-572 16-95 (97)
107 2dnq_A RNA-binding protein 4B; 99.6 2.5E-15 8.5E-20 132.0 11.9 79 489-575 6-84 (90)
108 2krb_A Eukaryotic translation 99.6 5E-16 1.7E-20 134.0 6.9 74 491-566 1-81 (81)
109 2wbr_A GW182, gawky, LD47780P; 99.6 1.1E-15 3.8E-20 135.3 9.2 73 491-569 7-79 (89)
110 2cpx_A Hypothetical protein FL 99.6 9E-16 3.1E-20 140.7 9.0 87 489-575 23-109 (115)
111 2dnn_A RNA-binding protein 12; 99.6 1.2E-15 4.2E-20 140.4 9.7 79 489-570 14-92 (109)
112 2a3j_A U1 small nuclear ribonu 99.6 1.5E-15 5.2E-20 143.5 10.5 81 489-572 27-111 (127)
113 1wex_A Hypothetical protein (r 99.6 2.5E-15 8.7E-20 137.1 11.4 80 489-574 13-94 (104)
114 2cpj_A Non-POU domain-containi 99.6 2.6E-15 8.8E-20 134.3 11.2 82 488-575 12-93 (99)
115 1x4g_A Nucleolysin TIAR; struc 99.6 2.5E-15 8.5E-20 136.9 11.2 82 488-575 22-103 (109)
116 2dgt_A RNA-binding protein 30; 99.6 3.8E-15 1.3E-19 131.4 12.0 81 487-575 6-86 (92)
117 1iqt_A AUF1, heterogeneous nuc 99.6 3E-16 1E-20 132.8 4.5 75 493-568 1-75 (75)
118 2f3j_A RNA and export factor b 99.6 5E-15 1.7E-19 147.4 13.9 83 489-572 86-168 (177)
119 2ytc_A PRE-mRNA-splicing facto 99.6 2.7E-15 9.4E-20 129.9 10.3 77 487-569 8-85 (85)
120 2hgm_A HNRPF protein, heteroge 99.6 9E-16 3.1E-20 145.0 7.5 80 488-570 39-120 (126)
121 1x5p_A Negative elongation fac 99.6 7.9E-15 2.7E-19 130.8 13.2 80 488-575 12-91 (97)
122 2dgu_A Heterogeneous nuclear r 99.6 7.8E-15 2.7E-19 132.2 13.2 79 489-575 9-87 (103)
123 2la4_A Nuclear and cytoplasmic 99.6 1.5E-15 5.2E-20 136.1 8.5 76 489-570 25-100 (101)
124 2lcw_A RNA-binding protein FUS 99.4 7.8E-17 2.7E-21 148.5 0.0 87 488-574 4-98 (116)
125 2lmi_A GRSF-1, G-rich sequence 99.6 7.9E-16 2.7E-20 140.1 6.2 82 488-571 8-92 (107)
126 1nu4_A U1A RNA binding domain; 99.6 1.7E-15 5.7E-20 134.5 8.0 82 488-572 5-90 (97)
127 2jvr_A Nucleolar protein 3; RN 99.6 1.9E-15 6.5E-20 139.6 8.6 78 490-571 27-105 (111)
128 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-14 4.8E-19 129.5 14.0 79 488-574 12-92 (99)
129 2ad9_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 139.6 10.3 81 488-574 28-110 (119)
130 2hvz_A Splicing factor, argini 99.6 2.3E-15 7.7E-20 135.0 8.6 78 492-574 1-78 (101)
131 1fjc_A Nucleolin RBD2, protein 99.6 2.7E-15 9.1E-20 133.1 8.8 82 487-573 12-93 (96)
132 2qfj_A FBP-interacting repress 99.6 6.2E-15 2.1E-19 148.0 12.0 86 490-575 124-209 (216)
133 2dha_A FLJ20171 protein; RRM d 99.6 6.1E-16 2.1E-20 145.5 4.3 81 488-570 20-104 (123)
134 2hgn_A Heterogeneous nuclear r 99.6 6E-16 2E-20 148.6 4.2 82 488-572 43-124 (139)
135 2xs2_A Deleted in azoospermia- 99.6 1.2E-15 4.2E-20 137.0 6.0 83 488-573 6-88 (102)
136 2xnq_A Nuclear polyadenylated 99.6 7E-15 2.4E-19 131.8 10.8 77 488-572 19-96 (97)
137 1whx_A Hypothetical protein ri 99.6 3E-15 1E-19 137.5 8.3 79 488-572 7-85 (111)
138 4f02_A Polyadenylate-binding p 99.6 6.5E-15 2.2E-19 149.6 11.5 84 489-572 13-96 (213)
139 1wf1_A RNA-binding protein RAL 99.6 1.5E-14 5.3E-19 131.8 12.7 76 490-573 26-102 (110)
140 1x4f_A Matrin 3; structural ge 99.6 7.2E-15 2.5E-19 136.1 10.5 82 488-575 22-106 (112)
141 2e44_A Insulin-like growth fac 99.6 7E-15 2.4E-19 130.4 10.0 79 489-571 13-92 (96)
142 3r27_A HnRNP L, heterogeneous 99.6 7.5E-15 2.6E-19 133.3 10.3 77 489-571 19-97 (100)
143 2e5g_A U6 snRNA-specific termi 99.6 1.3E-14 4.4E-19 128.6 11.6 79 489-573 6-84 (94)
144 3md3_A Nuclear and cytoplasmic 99.6 1E-14 3.5E-19 139.8 11.7 82 489-570 85-166 (166)
145 2jvo_A Nucleolar protein 3; nu 99.6 6.8E-15 2.3E-19 134.6 9.7 78 488-573 28-105 (108)
146 1fxl_A Paraneoplastic encephal 99.6 1.2E-14 4E-19 139.5 11.6 82 491-572 2-83 (167)
147 2cqh_A IGF-II mRNA-binding pro 99.6 5.2E-15 1.8E-19 130.6 8.4 79 489-574 6-86 (93)
148 3lqv_A PRE-mRNA branch site pr 99.6 1.1E-14 3.7E-19 133.6 10.7 80 489-571 6-85 (115)
149 2dnp_A RNA-binding protein 14; 99.6 1.4E-14 4.9E-19 127.2 11.1 78 488-573 6-83 (90)
150 2j8a_A Histone-lysine N-methyl 99.6 5.1E-15 1.8E-19 139.5 8.5 79 492-570 3-95 (136)
151 1b7f_A Protein (SXL-lethal pro 99.6 1.1E-14 3.6E-19 140.4 10.4 83 490-572 2-84 (168)
152 2i2y_A Fusion protein consists 99.5 1.2E-14 4.2E-19 139.7 10.3 80 488-572 70-149 (150)
153 2kvi_A Nuclear polyadenylated 99.5 8.4E-15 2.9E-19 130.5 8.3 79 488-574 7-86 (96)
154 1wg1_A KIAA1579 protein, homol 99.5 1.2E-14 4E-19 127.5 8.9 76 490-572 4-79 (88)
155 3egn_A RNA-binding protein 40; 99.5 3.2E-15 1.1E-19 142.7 5.0 83 490-572 44-131 (143)
156 3beg_B Splicing factor, argini 99.5 9.5E-15 3.2E-19 134.9 7.9 75 489-570 14-93 (115)
157 1l3k_A Heterogeneous nuclear r 99.5 2.2E-14 7.6E-19 141.8 11.0 85 487-572 9-93 (196)
158 2yh0_A Splicing factor U2AF 65 99.5 2.8E-14 9.7E-19 141.3 11.8 85 489-573 112-196 (198)
159 2g4b_A Splicing factor U2AF 65 99.5 1.7E-14 5.8E-19 139.7 9.4 80 490-569 93-172 (172)
160 3pgw_S U1-70K; protein-RNA com 99.5 3E-14 1E-18 160.7 12.7 84 490-573 101-184 (437)
161 2cjk_A Nuclear polyadenylated 99.5 1.5E-14 5.2E-19 139.3 8.6 81 490-571 86-166 (167)
162 2qfj_A FBP-interacting repress 99.5 5.1E-15 1.7E-19 148.7 4.3 84 489-572 26-109 (216)
163 1sjr_A Polypyrimidine tract-bi 99.5 4.6E-14 1.6E-18 138.9 10.4 80 489-572 44-125 (164)
164 1l3k_A Heterogeneous nuclear r 99.5 5.6E-14 1.9E-18 138.9 11.1 85 490-575 103-187 (196)
165 4f02_A Polyadenylate-binding p 99.5 5.4E-14 1.8E-18 142.8 10.7 80 491-572 103-182 (213)
166 1b7f_A Protein (SXL-lethal pro 99.5 9E-14 3.1E-18 133.8 11.4 80 489-568 87-168 (168)
167 3md3_A Nuclear and cytoplasmic 99.5 7.4E-14 2.5E-18 133.7 10.7 81 492-573 1-81 (166)
168 3d2w_A TAR DNA-binding protein 99.5 5.1E-14 1.7E-18 124.4 8.7 78 488-572 8-85 (89)
169 2dnl_A Cytoplasmic polyadenyla 99.5 8.9E-14 3E-18 127.9 10.2 78 489-569 6-86 (114)
170 3zzy_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 131.4 11.0 78 490-572 27-107 (130)
171 3pgw_A U1-A; protein-RNA compl 99.5 6.7E-13 2.3E-17 139.5 18.1 83 487-572 5-91 (282)
172 1wf0_A TDP-43, TAR DNA-binding 99.5 5.4E-14 1.9E-18 122.9 8.0 78 490-574 4-81 (88)
173 1fxl_A Paraneoplastic encephal 99.5 1.1E-13 3.7E-18 132.7 10.5 79 490-568 87-167 (167)
174 3tyt_A Heterogeneous nuclear r 99.5 8.6E-14 2.9E-18 141.5 10.2 78 490-572 3-81 (205)
175 2bz2_A Negative elongation fac 99.5 9E-14 3.1E-18 129.9 9.0 77 489-573 37-113 (121)
176 2cq2_A Hypothetical protein LO 99.5 9.5E-14 3.2E-18 128.9 9.1 78 489-572 23-107 (114)
177 3nmr_A Cugbp ELAV-like family 99.5 1.3E-13 4.5E-18 133.3 10.0 79 490-569 94-175 (175)
178 2hzc_A Splicing factor U2AF 65 99.5 1.2E-13 4E-18 119.9 8.4 72 489-567 4-86 (87)
179 2diu_A KIAA0430 protein; struc 99.5 2.5E-13 8.5E-18 121.5 10.6 75 491-575 9-88 (96)
180 3nmr_A Cugbp ELAV-like family 99.5 1.5E-13 5E-18 133.0 9.8 83 490-572 2-89 (175)
181 2e5i_A Heterogeneous nuclear r 99.5 2.5E-13 8.4E-18 128.0 11.0 76 491-572 25-103 (124)
182 2cjk_A Nuclear polyadenylated 99.4 9.9E-14 3.4E-18 133.6 8.0 79 490-570 2-80 (167)
183 2pe8_A Splicing factor 45; RRM 99.4 3.7E-13 1.3E-17 122.9 10.9 82 489-570 6-93 (105)
184 1fje_B Nucleolin RBD12, protei 99.4 3.1E-13 1.1E-17 131.5 9.7 78 489-571 97-174 (175)
185 2voo_A Lupus LA protein; RNA-b 99.4 4.5E-13 1.5E-17 135.0 10.8 79 490-570 108-186 (193)
186 2dit_A HIV TAT specific factor 99.4 2.1E-12 7.2E-17 118.5 12.7 82 488-573 12-104 (112)
187 2ghp_A U4/U6 snRNA-associated 99.4 6E-13 2.1E-17 140.6 10.0 82 489-571 208-291 (292)
188 3u1l_A PRE-mRNA-splicing facto 99.4 5.1E-13 1.8E-17 139.1 8.6 80 488-573 131-231 (240)
189 2adc_A Polypyrimidine tract-bi 99.4 8E-13 2.7E-17 135.6 9.9 79 489-572 32-111 (229)
190 1fje_B Nucleolin RBD12, protei 99.4 2.2E-13 7.6E-18 132.6 4.9 84 487-572 9-92 (175)
191 3pgw_A U1-A; protein-RNA compl 99.4 1.3E-12 4.3E-17 137.4 10.7 78 488-570 204-282 (282)
192 3smz_A Protein raver-1, ribonu 99.4 1.7E-12 5.7E-17 136.6 11.2 83 490-572 94-176 (284)
193 3smz_A Protein raver-1, ribonu 99.4 1.8E-12 6E-17 136.4 10.8 84 489-573 182-266 (284)
194 1qm9_A Polypyrimidine tract-bi 99.3 9E-13 3.1E-17 131.2 6.7 78 490-572 2-80 (198)
195 1jmt_A Splicing factor U2AF 35 99.3 8.6E-13 2.9E-17 120.2 4.0 73 495-568 19-103 (104)
196 3tyt_A Heterogeneous nuclear r 99.3 3.1E-12 1.1E-16 129.9 7.3 77 490-568 122-204 (205)
197 3sde_A Paraspeckle component 1 99.3 7.4E-12 2.5E-16 131.0 9.7 81 491-572 96-180 (261)
198 1qm9_A Polypyrimidine tract-bi 99.3 6.1E-12 2.1E-16 125.2 7.5 77 490-571 119-197 (198)
199 2ghp_A U4/U6 snRNA-associated 99.2 7.9E-12 2.7E-16 132.0 8.6 83 490-573 116-199 (292)
200 2d9o_A DNAJ (HSP40) homolog, s 99.2 5.3E-11 1.8E-15 107.8 12.7 76 491-573 10-92 (100)
201 3v4m_A Splicing factor U2AF 65 99.2 1.1E-11 3.7E-16 113.1 8.3 79 491-569 5-95 (105)
202 3ue2_A Poly(U)-binding-splicin 99.2 1.5E-11 5.2E-16 114.7 9.4 80 490-569 19-107 (118)
203 2adc_A Polypyrimidine tract-bi 99.2 1.4E-11 4.9E-16 126.3 9.9 77 490-571 150-228 (229)
204 3sde_A Paraspeckle component 1 99.2 1.5E-11 5E-16 128.7 9.8 76 489-570 20-95 (261)
205 2g4b_A Splicing factor U2AF 65 99.2 2.5E-11 8.6E-16 117.3 9.5 75 490-571 3-88 (172)
206 2yh0_A Splicing factor U2AF 65 99.2 3.7E-11 1.3E-15 118.8 9.8 76 490-572 3-89 (198)
207 3tht_A Alkylated DNA repair pr 99.1 1E-10 3.5E-15 127.8 9.0 76 488-569 15-97 (345)
208 2opv_A KHSRP protein; KH domai 99.1 1.2E-10 4.3E-15 102.2 7.6 72 250-343 13-84 (85)
209 1dtj_A RNA-binding neurooncolo 99.1 2.9E-10 1E-14 97.5 7.7 73 250-343 2-74 (76)
210 1x4m_A FAR upstream element bi 99.0 1.5E-10 5E-15 103.8 5.4 78 246-345 10-87 (94)
211 3s6e_A RNA-binding protein 39; 99.0 4.1E-10 1.4E-14 104.4 6.3 77 490-570 6-92 (114)
212 2hh2_A KH-type splicing regula 99.0 6.9E-10 2.4E-14 101.8 6.9 74 251-345 7-80 (107)
213 2p2r_A Poly(RC)-binding protei 98.9 7.9E-10 2.7E-14 94.9 5.9 73 248-344 2-74 (76)
214 1ec6_A RNA-binding protein NOV 98.9 6.1E-10 2.1E-14 98.2 5.1 74 250-344 2-75 (87)
215 1we8_A Tudor and KH domain con 98.9 1.2E-09 4.1E-14 99.6 7.2 81 240-344 6-86 (104)
216 2hh3_A KH-type splicing regula 98.9 5.6E-10 1.9E-14 102.3 4.7 70 252-345 12-81 (106)
217 1zzk_A Heterogeneous nuclear r 98.9 2E-09 7E-14 93.8 7.7 72 249-344 5-76 (82)
218 1x4n_A FAR upstream element bi 98.9 1.1E-09 3.8E-14 97.7 5.8 72 249-344 13-84 (92)
219 1wvn_A Poly(RC)-binding protei 98.9 1.6E-09 5.5E-14 94.4 6.2 71 250-344 5-75 (82)
220 3u1k_A Polyribonucleotide nucl 98.9 2E-09 6.7E-14 125.9 8.5 96 217-343 534-630 (630)
221 2dnr_A Synaptojanin-1; RRM dom 98.8 7.5E-09 2.6E-13 91.8 8.9 74 491-573 7-88 (91)
222 2axy_A Poly(RC)-binding protei 98.8 2.6E-09 9E-14 91.2 5.6 70 249-344 3-72 (73)
223 1vig_A Vigilin; RNA-binding pr 98.8 4.7E-09 1.6E-13 89.1 6.6 68 250-343 4-71 (71)
224 1j5k_A Heterogeneous nuclear r 98.8 3.4E-09 1.2E-13 93.9 5.5 72 249-344 12-83 (89)
225 3krm_A Insulin-like growth fac 98.8 9.7E-09 3.3E-13 100.2 9.0 101 220-346 58-158 (163)
226 2ctk_A Vigilin; K homology typ 98.8 3.9E-09 1.3E-13 96.3 5.3 74 243-344 11-84 (104)
227 2cte_A Vigilin; K homology typ 98.8 3.3E-09 1.1E-13 95.0 4.7 69 250-344 16-84 (94)
228 2dgr_A Ring finger and KH doma 98.8 3.1E-09 1.1E-13 93.1 4.2 69 248-343 7-75 (83)
229 2ctl_A Vigilin; K homology typ 98.8 4.8E-09 1.6E-13 94.5 5.4 72 250-344 16-87 (97)
230 1owx_A Lupus LA protein, SS-B, 98.8 1.8E-08 6.3E-13 94.3 8.8 75 488-568 15-93 (121)
231 2cpq_A FragIle X mental retard 98.7 7.9E-09 2.7E-13 91.8 4.4 66 250-344 14-81 (91)
232 2ctm_A Vigilin; K homology typ 98.7 1.2E-08 4.1E-13 91.6 5.5 70 250-344 16-85 (95)
233 2jvz_A KH type-splicing, FAR u 98.7 1.1E-08 3.8E-13 99.6 5.4 102 220-345 58-161 (164)
234 4aid_A Polyribonucleotide nucl 98.7 8.9E-09 3E-13 121.7 5.5 101 217-348 537-638 (726)
235 3dxb_A Thioredoxin N-terminall 98.7 2.8E-08 9.5E-13 101.2 8.3 67 503-569 141-211 (222)
236 2jzx_A Poly(RC)-binding protei 98.6 9.3E-08 3.2E-12 93.0 8.6 101 220-343 57-158 (160)
237 1ufw_A Synaptojanin 2; RNP dom 98.6 7.8E-08 2.7E-12 85.8 6.7 71 490-569 14-93 (95)
238 2ctj_A Vigilin; K homology typ 98.5 5.1E-08 1.7E-12 87.5 3.9 69 250-344 16-85 (95)
239 1j4w_A FUSE binding protein; s 98.5 1.9E-07 6.5E-12 92.1 7.0 72 250-342 103-174 (174)
240 2jvz_A KH type-splicing, FAR u 98.4 3.6E-07 1.2E-11 88.9 7.8 73 251-345 2-74 (164)
241 2e3u_A PH-DIM2P, hypothetical 98.3 3.7E-07 1.3E-11 93.8 5.5 71 243-344 28-103 (219)
242 2anr_A Neuro-oncological ventr 98.3 5.2E-07 1.8E-11 89.2 5.9 75 250-345 5-79 (178)
243 1j4w_A FUSE binding protein; s 98.3 5.5E-07 1.9E-11 88.8 5.8 70 251-344 3-72 (174)
244 2jzx_A Poly(RC)-binding protei 98.2 1.1E-06 3.6E-11 85.4 5.8 69 249-343 3-71 (160)
245 2anr_A Neuro-oncological ventr 98.2 5.3E-07 1.8E-11 89.2 3.6 73 250-344 103-175 (178)
246 3cdi_A Polynucleotide phosphor 98.2 6.6E-07 2.2E-11 106.2 3.8 100 217-347 527-627 (723)
247 3krm_A Insulin-like growth fac 98.1 2.6E-06 8.8E-11 83.0 6.5 69 252-343 4-72 (163)
248 1e3p_A Guanosine pentaphosphat 98.0 8.3E-07 2.8E-11 105.7 0.5 95 217-342 566-660 (757)
249 2l9w_A U4/U6 snRNA-associated- 97.9 2E-05 6.9E-10 71.8 8.2 72 489-566 19-95 (117)
250 2ihx_A Nucleocapsid (NC) prote 97.9 7.5E-06 2.6E-10 67.4 3.7 47 370-416 4-50 (61)
251 1tua_A Hypothetical protein AP 97.8 2.3E-05 8E-10 78.7 7.2 54 266-344 107-160 (191)
252 2qnd_A FMR1 protein; KH domain 97.6 5.5E-05 1.9E-09 72.7 6.1 72 253-344 69-142 (144)
253 2e3u_A PH-DIM2P, hypothetical 97.6 5.5E-05 1.9E-09 77.6 6.4 54 267-345 139-192 (219)
254 2ec7_A GAG polyprotein (PR55GA 97.6 3.4E-05 1.2E-09 60.7 3.6 41 371-416 7-47 (49)
255 2a51_A Nucleocapsid protein; s 97.6 2.7E-05 9.3E-10 58.3 2.7 37 372-413 2-38 (39)
256 2bl6_A Nucleocapsid protein P1 97.5 3.2E-05 1.1E-09 57.2 2.4 35 372-413 2-36 (37)
257 2cqf_A RNA-binding protein LIN 97.5 3.6E-05 1.2E-09 63.7 2.9 42 371-416 8-49 (63)
258 1cl4_A Protein (GAG polyprotei 97.5 2.9E-05 9.9E-10 63.5 1.7 45 372-416 3-50 (60)
259 2li8_A Protein LIN-28 homolog 97.5 5E-05 1.7E-09 64.9 3.3 42 371-416 25-66 (74)
260 1a1t_A Nucleocapsid protein; s 97.3 9.8E-05 3.4E-09 59.3 3.1 40 371-415 13-52 (55)
261 3nyb_B Protein AIR2; polya RNA 97.3 0.00011 3.6E-09 64.3 3.2 47 371-417 6-67 (83)
262 2ctf_A Vigilin; K homology typ 97.3 0.0003 1E-08 63.7 5.6 65 251-344 27-92 (102)
263 3ts2_A Protein LIN-28 homolog 97.2 0.00016 5.6E-09 69.8 3.3 42 371-416 98-139 (148)
264 1wey_A Calcipressin 1; structu 96.8 0.0017 5.7E-08 58.9 6.4 73 491-569 5-82 (104)
265 3n89_A Defective in GERM LINE 96.7 0.0024 8.1E-08 70.3 7.8 83 241-342 20-104 (376)
266 2lli_A Protein AIR2; RNA surve 96.7 0.00084 2.9E-08 62.6 3.6 44 371-414 65-123 (124)
267 3n89_A Defective in GERM LINE 96.6 0.0031 1.1E-07 69.3 7.8 96 220-343 162-260 (376)
268 1tua_A Hypothetical protein AP 96.4 0.0031 1.1E-07 63.3 5.7 69 250-346 3-75 (191)
269 2qnd_A FMR1 protein; KH domain 96.4 0.0028 9.5E-08 60.7 5.1 62 250-338 3-64 (144)
270 1a6b_B Momulv, zinc finger pro 96.3 0.0018 6.3E-08 48.7 2.7 24 394-417 8-31 (40)
271 2lli_A Protein AIR2; RNA surve 96.1 0.0028 9.5E-08 59.1 3.4 40 372-415 44-83 (124)
272 2dhx_A Poly (ADP-ribose) polym 96.1 0.023 8E-07 51.3 9.2 70 490-568 7-81 (104)
273 1whv_A Poly(A)-specific ribonu 96.0 0.023 7.8E-07 50.9 8.4 56 490-554 15-70 (100)
274 1u6p_A GAG polyprotein; MLV, A 95.7 0.0041 1.4E-07 50.2 2.0 25 393-417 20-44 (56)
275 1uw4_A UPF3X; nonsense mediate 95.5 0.042 1.4E-06 48.6 8.2 69 492-560 2-72 (91)
276 3ctr_A Poly(A)-specific ribonu 95.3 0.022 7.4E-07 51.1 5.5 54 492-554 7-60 (101)
277 1wwh_A Nucleoporin 35, nucleop 95.1 0.06 2E-06 49.9 8.0 73 488-568 21-94 (119)
278 1dsq_A Nucleic acid binding pr 95.1 0.0069 2.3E-07 41.2 1.3 20 396-415 2-21 (26)
279 3v69_A Protein filia; RNA-bind 95.0 0.027 9.2E-07 53.2 5.4 91 237-363 45-135 (140)
280 2kn4_A Immunoglobulin G-bindin 94.3 0.034 1.2E-06 52.8 4.6 36 520-557 2-37 (158)
281 1nc8_A Nucleocapsid protein; H 93.7 0.022 7.6E-07 39.6 1.4 20 395-414 5-24 (29)
282 2i2y_A Fusion protein consists 93.1 0.054 1.9E-06 51.1 3.6 42 529-571 9-51 (150)
283 3p3d_A Nucleoporin 53; structu 92.2 0.12 4E-06 48.8 4.4 78 490-569 6-97 (132)
284 2l08_A Regulator of nonsense t 92.2 0.22 7.4E-06 44.6 5.9 79 490-568 8-93 (97)
285 3pq1_A Poly(A) RNA polymerase; 92.0 0.067 2.3E-06 60.5 3.1 57 490-552 52-108 (464)
286 2ysa_A Retinoblastoma-binding 92.0 0.049 1.7E-06 43.8 1.4 22 395-416 6-27 (55)
287 2a51_A Nucleocapsid protein; s 86.2 0.2 6.9E-06 37.0 0.9 19 397-415 1-19 (39)
288 2li8_A Protein LIN-28 homolog 84.7 0.36 1.2E-05 41.0 1.9 36 379-414 2-42 (74)
289 3h0g_A DNA-directed RNA polyme 84.5 0.19 6.5E-06 65.0 0.0 18 278-295 1265-1282(1752)
290 1a6b_B Momulv, zinc finger pro 84.1 0.51 1.7E-05 35.4 2.2 26 365-390 5-30 (40)
291 2bl6_A Nucleocapsid protein P1 83.6 0.38 1.3E-05 35.1 1.3 19 397-415 1-19 (37)
292 2ec7_A GAG polyprotein (PR55GA 82.7 0.39 1.3E-05 37.3 1.1 21 395-415 5-25 (49)
293 2ihx_A Nucleocapsid (NC) prote 82.0 0.53 1.8E-05 38.2 1.7 22 395-416 3-24 (61)
294 1u6p_A GAG polyprotein; MLV, A 80.5 0.77 2.6E-05 36.9 2.1 26 365-390 18-43 (56)
295 1a1t_A Nucleocapsid protein; s 79.7 0.6 2.1E-05 37.0 1.3 21 395-415 11-31 (55)
296 3nyb_B Protein AIR2; polya RNA 76.5 0.81 2.8E-05 39.7 1.2 21 395-415 4-24 (83)
297 2cqf_A RNA-binding protein LIN 75.2 0.93 3.2E-05 37.1 1.2 21 395-415 6-26 (63)
298 1cl4_A Protein (GAG polyprotei 73.7 0.67 2.3E-05 37.3 0.0 18 398-415 3-20 (60)
299 2cxc_A NUSA; transcription ter 73.3 1.8 6.1E-05 41.4 2.8 30 266-295 45-74 (144)
300 3d45_A Poly(A)-specific ribonu 72.9 5.3 0.00018 45.5 7.2 55 491-554 440-494 (507)
301 2z0s_A Probable exosome comple 67.7 10 0.00035 38.8 7.3 53 266-341 157-209 (235)
302 2g0c_A ATP-dependent RNA helic 67.0 9 0.00031 31.7 5.6 68 493-569 2-75 (76)
303 3ts2_A Protein LIN-28 homolog 66.5 1.9 6.3E-05 41.3 1.3 20 395-414 96-115 (148)
304 2ba0_A Archeal exosome RNA bin 57.2 13 0.00044 38.0 5.7 52 266-340 145-198 (229)
305 1nc8_A Nucleocapsid protein; H 56.7 4.5 0.00016 27.8 1.5 20 370-389 6-25 (29)
306 2ijl_A AGR_C_4647P, molybdenum 54.3 6.6 0.00023 36.9 2.7 20 277-296 57-76 (135)
307 1dsq_A Nucleic acid binding pr 53.7 5.4 0.00019 26.7 1.5 20 371-390 3-22 (26)
308 2asb_A Transcription elongatio 53.2 2.4 8.2E-05 44.1 -0.5 75 213-294 80-155 (251)
309 2hqh_E Restin; beta/BETA struc 52.0 4.4 0.00015 27.4 0.8 16 398-413 5-20 (26)
310 3ukx_C Bimax2 peptide; arm rep 46.6 8.8 0.0003 25.5 1.5 13 106-118 7-19 (28)
311 1wjw_A Phosphoacetylglucosamin 42.8 51 0.0017 29.6 6.7 48 277-342 45-93 (112)
312 2pzo_E CAP-Gly domain-containi 42.6 7.3 0.00025 29.2 0.8 19 396-414 20-38 (42)
313 1k0r_A NUSA; two component arr 41.9 4.9 0.00017 44.0 -0.4 75 213-294 203-278 (366)
314 2ysa_A Retinoblastoma-binding 41.0 17 0.00058 29.0 2.8 19 371-389 8-26 (55)
315 4fxw_B Splicing factor 1; UHM, 38.8 8.2 0.00028 35.9 0.7 15 104-118 5-19 (124)
316 2hqh_E Restin; beta/BETA struc 38.2 10 0.00034 25.7 0.8 21 370-390 3-23 (26)
317 1go3_E DNA-directed RNA polyme 37.9 18 0.00062 35.3 3.1 38 250-296 6-55 (187)
318 2je6_I RRP4, exosome complex R 37.6 3.6 0.00012 42.7 -2.1 52 266-340 164-218 (251)
319 3eth_A Phosphoribosylaminoimid 37.5 23 0.00078 38.3 4.1 51 279-344 291-341 (355)
320 2nn6_G Exosome complex exonucl 35.3 18 0.0006 38.3 2.7 53 266-341 219-271 (289)
321 3k5i_A Phosphoribosyl-aminoimi 34.8 44 0.0015 36.4 5.9 40 279-332 349-388 (403)
322 2ja9_A Exosome complex exonucl 33.6 25 0.00084 34.5 3.2 52 266-340 100-152 (175)
323 2pt7_G HP1451, hypothetical pr 30.4 11 0.00039 36.1 0.2 22 266-287 42-63 (152)
324 2cxc_A NUSA; transcription ter 26.9 14 0.00047 35.2 0.1 37 251-293 103-139 (144)
325 1hh2_P NUSA, N utilization sub 26.6 14 0.00049 40.0 0.2 75 213-294 199-274 (344)
326 4e4t_A Phosphoribosylaminoimid 25.5 73 0.0025 34.9 5.6 50 279-342 365-414 (419)
327 3twe_A Alpha4H; unknown functi 24.8 64 0.0022 21.3 2.9 19 167-185 9-27 (27)
328 3e2u_E CAP-Gly domain-containi 24.4 22 0.00076 26.8 0.8 17 398-414 22-38 (42)
329 1n0z_A ZNF265; zinc finger, RN 23.5 35 0.0012 26.0 1.8 22 383-404 14-38 (45)
330 3szp_A Transcriptional regulat 21.6 60 0.002 31.9 3.6 20 277-296 34-53 (291)
331 2esn_A Probable transcriptiona 21.2 60 0.0021 32.6 3.6 20 277-296 43-62 (310)
332 2pzo_E CAP-Gly domain-containi 20.6 30 0.001 26.0 0.8 21 370-390 20-40 (42)
333 3iev_A GTP-binding protein ERA 20.5 39 0.0013 35.3 2.1 40 249-293 238-285 (308)
334 2jpi_A Hypothetical protein; a 20.1 64 0.0022 29.5 3.1 62 276-343 36-101 (118)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=7.1e-39 Score=306.09 Aligned_cols=125 Identities=48% Similarity=0.781 Sum_probs=113.3
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCC-CCCCCCceEEEEecCH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPD-PSENEDLHVLVEAETQ 328 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~-~~~~e~LHv~I~a~~~ 328 (797)
.+++|||||+++||+|||||+||||||+|+|+||+||||||.||||||+|+++.+......+. .+++|||||+|+|++.
T Consensus 1 ~~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~ 80 (140)
T 2bl5_A 1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA 80 (140)
T ss_dssp CEEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred CceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc
Confidence 368999999999999999999999999999999999999999999999999987654333332 2789999999999887
Q ss_pred H-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhcCCcCccchhc
Q 040243 329 E-----SLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCR 374 (797)
Q Consensus 329 e-----~v~~A~~~I~~ll~~~~e~~n~~k~~Ql~ela~lnGt~r~~~~c~ 374 (797)
+ +|++|+++|++||.++++++|++|++||+|||.||||||++..|.
T Consensus 81 ~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~ 131 (140)
T 2bl5_A 81 QNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKS 131 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSC
T ss_pred hhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcccc
Confidence 5 899999999999999999999999999999999999999987653
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=3.6e-36 Score=285.94 Aligned_cols=122 Identities=48% Similarity=0.804 Sum_probs=110.4
Q ss_pred CceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCH
Q 040243 249 PKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQ 328 (797)
Q Consensus 249 ~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~ 328 (797)
.|+++|||||+++||+|||||+||||||+|||+||+||||||.|||+||+|+++.+. .+.....+++|+|||+|+|++.
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~-~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGR-KDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSS-CCCCCSCCSSCCEEEEEEESSH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccc-cccccccccCCCeEEEEEECCH
Confidence 589999999999999999999999999999999999999999999999999987653 2444456889999999999999
Q ss_pred HHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHhhcCCcCccc
Q 040243 329 ESLEGAAAMVEKLLQP---VDEVLNEHKRQQLRELAALNGTIRDEE 371 (797)
Q Consensus 329 e~v~~A~~~I~~ll~~---~~e~~n~~k~~Ql~ela~lnGt~r~~~ 371 (797)
++|++|+++|+.||.. +++++|++|++||+|||.||||||+++
T Consensus 84 e~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~ 129 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDD 129 (131)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcC
Confidence 9999999999999975 778999999999999999999999874
No 3
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=99.97 E-value=3.6e-32 Score=252.46 Aligned_cols=120 Identities=37% Similarity=0.713 Sum_probs=87.8
Q ss_pred CCCCCccCCCCCCCCCCCcccCCccccccCCCCcCCH-HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCCCC
Q 040243 130 GSGTRKRRSRWADDEPKPVIQLPDFMKDFTGGIEFDP-EIQALNSRLLEISRMLQSGLPLDDRPEGQRSPSPEPIYDNMG 208 (797)
Q Consensus 130 ~~~~~~r~srw~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~r~~ei~~~l~~~~~~~~~~~~~rspsp~p~yd~~g 208 (797)
|.++||||||||.++++....||...+.++++++.++ +++++++|||||+++|++|++.....+++|||||+|+||++|
T Consensus 4 ~~~~~~r~srW~~~~~~~k~~ip~~pt~ip~~Lt~eq~~ay~~~~RieeIt~kL~~g~l~i~~~~~~RSPSPpP~Yd~~G 83 (124)
T 4fxw_B 4 GSSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEG 83 (124)
T ss_dssp --------CCBCCC--------CCSCSBCCSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSTTSSCCCCCCCBCTTS
T ss_pred CccccccccccCCCcccccccCCCCCeecCCCCCHHHHHHHHHHhhHHHHHHHHhcCCcCCCCCcccCCCCCCCccCccc
Confidence 5679999999998754433345555566677776555 335679999999999999987543346899999999999999
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 040243 209 IRINTREYRARERLNKERQEIISQIIKRNPAFKPPADYRPP 249 (797)
Q Consensus 209 ~r~ntre~r~~~~le~er~~li~~~~~~~p~~~pp~dy~p~ 249 (797)
+||||||+|+|++||+|||+||++|+++||.|++|+||||.
T Consensus 84 ~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DYkpp 124 (124)
T 4fxw_B 84 KRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPP 124 (124)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC----
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999974
No 4
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=7.7e-27 Score=217.91 Aligned_cols=101 Identities=27% Similarity=0.379 Sum_probs=91.9
Q ss_pred CceEEEEEecCC-CCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecC
Q 040243 249 PKLQKKLYIPMK-EYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAET 327 (797)
Q Consensus 249 ~~~~~Ki~IP~~-~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~ 327 (797)
.++++|||||++ +||+|||||+||||+|+|||+||+||||||.|||+||+|... ....+++|+|||+|+|.+
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~-------~~~~e~~e~l~V~I~a~~ 82 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEP-------ASGREAFEPMYIYISHPK 82 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCT-------TTSSCCSSBCEEEEEESS
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccc-------ccccccCCCcEEEEEeCC
Confidence 368999999999 699999999999999999999999999999999999987321 223478999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 040243 328 QESLEGAAAMVEKLLQPVDEVLNEHKRQQ 356 (797)
Q Consensus 328 ~e~v~~A~~~I~~ll~~~~e~~n~~k~~Q 356 (797)
.++|++|+++|+.||..+.+.++++|++|
T Consensus 83 ~e~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 83 PEGLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 99999999999999999999999999875
No 5
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=167.90 Aligned_cols=139 Identities=28% Similarity=0.420 Sum_probs=103.8
Q ss_pred cccceecCCCCCCcccCCCCCcCCCCcchHHHHHHhhhcCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 040243 396 DVLCKICGDGGHPTIDCLVKGTTGKKMDDEYQNFLAELGGTLPESASKQSTTLALGPGSGSSGSNPPWANNSGSSGTPGH 475 (797)
Q Consensus 396 ~v~Cr~CG~~gH~t~dCp~k~~~g~~ld~eY~~~m~Elg~~~pe~a~ka~~~~a~g~g~gg~G~~~p~~~~~g~~g~~g~ 475 (797)
.|.|.+|++-.|.+ | ..++++|.+++++|-....-. ..........++++ + .
T Consensus 2 mi~c~~c~~w~H~~--c-------~~~~~~~~~~l~~lp~~~~~~---------------c~~C~~~~~~~~~~-~---~ 53 (140)
T 2ku7_A 2 MMQCGKCDRWVHSK--C-------ENLSDEMYEILSNLPESVAYT---------------CVNCTERHVDGGSG-G---S 53 (140)
T ss_dssp CCCCSCCSSCHHHH--H-------CCCCHHHHHHHHSSCTTTTCC---------------SSCCTTTSCCCCSC-S---S
T ss_pred ccccccCCCccCCc--c-------cccCHHHHHHHhhccccceee---------------CccccccccCCCCC-C---C
Confidence 57899999988865 5 248899999998754211000 00000000000000 0 0
Q ss_pred CCCCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCc
Q 040243 476 PGLGSNGAKPIKELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNG 555 (797)
Q Consensus 476 ~g~g~~~~~~~~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG 555 (797)
+ + ........++|||+||+.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|||
T Consensus 54 ~--~----~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 54 G--G----SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp C--S----SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred C--C----CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 0 0 011334678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccceEEEEec
Q 040243 556 YRLEGRTIAVRVA 568 (797)
Q Consensus 556 ~~l~Gr~L~V~~A 568 (797)
..|+|+.|+|+||
T Consensus 128 ~~~~g~~l~v~~A 140 (140)
T 2ku7_A 128 SELFGRTIRVNLA 140 (140)
T ss_dssp EEETTEEEEEEC-
T ss_pred CEECCEEEEEEeC
Confidence 9999999999986
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=161.36 Aligned_cols=82 Identities=44% Similarity=0.753 Sum_probs=78.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
..+++|||+||++++|+++|+++|++||.|.+|+|++|+.||++||||||+|.+.++|++||+.|||..|+|+.|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 040243 569 GK 570 (797)
Q Consensus 569 ~~ 570 (797)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 63
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.6e-18 Score=158.01 Aligned_cols=89 Identities=34% Similarity=0.598 Sum_probs=83.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|++.+....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 998765543
No 8
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=153.94 Aligned_cols=89 Identities=26% Similarity=0.433 Sum_probs=83.6
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
+....++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|||+.|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|+..+....
T Consensus 91 ~a~~~~~~~ 99 (103)
T 2cq0_A 91 WAKPSTNSG 99 (103)
T ss_dssp ESSCCCCSC
T ss_pred ECCCCCCCC
Confidence 998766544
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=1e-17 Score=153.85 Aligned_cols=89 Identities=36% Similarity=0.598 Sum_probs=83.6
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|+|+.|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|+..+....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998765543
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=149.66 Aligned_cols=82 Identities=32% Similarity=0.553 Sum_probs=78.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||+.++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.||+..|+|+.|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 040243 568 AG 569 (797)
Q Consensus 568 A~ 569 (797)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 11
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=156.66 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||++++++++|+++|++||.|.+|+|++|+.||++||||||+|.+.++|++||+.|||..|+|+.|+|++|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 040243 570 KPP 572 (797)
Q Consensus 570 ~~~ 572 (797)
...
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 543
No 12
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=152.66 Aligned_cols=89 Identities=26% Similarity=0.387 Sum_probs=83.1
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
||+......
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dnm_A 89 VARYGRRDL 97 (103)
T ss_dssp ECSSCCSCC
T ss_pred ECCcCCCCC
Confidence 998655443
No 13
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=151.96 Aligned_cols=88 Identities=40% Similarity=0.565 Sum_probs=81.8
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.+...++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 556789999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
||.......
T Consensus 92 ~a~~~~~~~ 100 (116)
T 2cqd_A 92 LAYLGAKPR 100 (116)
T ss_dssp ESTTTCCCC
T ss_pred EcccCCCcc
Confidence 997654433
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=151.20 Aligned_cols=88 Identities=33% Similarity=0.497 Sum_probs=82.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.|+++.|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|+......
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99876543
No 15
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.6e-18 Score=152.91 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=73.2
Q ss_pred cEEEEecCCCCCcHHHHHHHhhcCC--CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 492 TNLYIGYLPPTLDDDGLIRLFSTFG--DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 492 ~tLfVgNLp~~vte~dL~~~Fs~fG--~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
.+|||+||++++++++|+++|++|| .|.+|+|++|+.||++||||||+|.+.++|++||+.|||..|+|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 040243 570 KPPQ 573 (797)
Q Consensus 570 ~~~~ 573 (797)
.+..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6544
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=147.35 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=79.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 040243 568 AGK 570 (797)
Q Consensus 568 A~~ 570 (797)
|+.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 17
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=149.76 Aligned_cols=84 Identities=25% Similarity=0.359 Sum_probs=78.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+.||++.|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87543
No 18
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=148.36 Aligned_cols=87 Identities=21% Similarity=0.421 Sum_probs=81.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+ |+++.|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred cCCCCCCC
Q 040243 568 AGKPPQPT 575 (797)
Q Consensus 568 A~~~~~~~ 575 (797)
+..+....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 98765544
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=147.65 Aligned_cols=86 Identities=23% Similarity=0.485 Sum_probs=80.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 040243 567 VAGKPPQ 573 (797)
Q Consensus 567 ~A~~~~~ 573 (797)
|+..+..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9986543
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=150.51 Aligned_cols=89 Identities=22% Similarity=0.426 Sum_probs=82.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcC------ceeecc
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN------GYRLEG 560 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~Ln------G~~l~G 560 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.|+ +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceEEEEecCCCCCCC
Q 040243 561 RTIAVRVAGKPPQPT 575 (797)
Q Consensus 561 r~L~V~~A~~~~~~~ 575 (797)
+.|+|+|+..+....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999998765443
No 21
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.7e-17 Score=148.31 Aligned_cols=87 Identities=21% Similarity=0.390 Sum_probs=80.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++|| |.+|+|++|+.|++++|||||+|.+.++|++|| .||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999999999999999999999999999 899999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|+.......
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 998765443
No 22
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=145.69 Aligned_cols=83 Identities=37% Similarity=0.587 Sum_probs=77.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||+.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|+||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 040243 569 GKP 571 (797)
Q Consensus 569 ~~~ 571 (797)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=152.12 Aligned_cols=83 Identities=16% Similarity=0.434 Sum_probs=77.3
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCC-CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhc-CceeeccceEEEEec
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFG-DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM-NGYRLEGRTIAVRVA 568 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG-~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~L-nG~~l~Gr~L~V~~A 568 (797)
+++|||+||+.++||++|+++|++|| .|.+|+|++|+.||++||||||+|.+.++|++||+.| ++..|+|+.|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999987 567899999999999
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86654
No 24
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=148.82 Aligned_cols=87 Identities=33% Similarity=0.550 Sum_probs=81.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.+ +++++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4557889999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|+..+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 998766544
No 25
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=146.55 Aligned_cols=86 Identities=34% Similarity=0.592 Sum_probs=81.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||+.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|||+.|+|+.|+|+|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 040243 570 KPPQPT 575 (797)
Q Consensus 570 ~~~~~~ 575 (797)
.+....
T Consensus 84 ~~~~~~ 89 (95)
T 2dnz_A 84 ERLDGG 89 (95)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 766544
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=149.77 Aligned_cols=89 Identities=25% Similarity=0.444 Sum_probs=83.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEec-CCCCcccceEEEEecCHHHHHHHHHhc-CceeeccceEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKD-RVTGMSKGYGFVKYADIQMANNAIASM-NGYRLEGRTIA 564 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~d-k~TGksrGfaFV~F~s~e~A~~AI~~L-nG~~l~Gr~L~ 564 (797)
.+...++|||+||++++++++|+++|++||.|.+|+|+++ +.+++++|||||+|.+.++|++||+.| |++.|+|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4567889999999999999999999999999999999999 889999999999999999999999999 99999999999
Q ss_pred EEecCCCCCCC
Q 040243 565 VRVAGKPPQPT 575 (797)
Q Consensus 565 V~~A~~~~~~~ 575 (797)
|+|+.......
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998765433
No 27
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=147.42 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=81.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 040243 569 GKPPQP 574 (797)
Q Consensus 569 ~~~~~~ 574 (797)
..+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 876654
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.9e-17 Score=142.84 Aligned_cols=81 Identities=37% Similarity=0.588 Sum_probs=78.2
Q ss_pred cEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecCCC
Q 040243 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGKP 571 (797)
Q Consensus 492 ~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~~~ 571 (797)
++|||+||+.++++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+|+..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 040243 572 P 572 (797)
Q Consensus 572 ~ 572 (797)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=150.59 Aligned_cols=87 Identities=28% Similarity=0.458 Sum_probs=81.6
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. +++.|+|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456778999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
++..+...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99866543
No 30
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=151.86 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=83.1
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEE--------EEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceee
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIV--------MAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRL 558 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~--------~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l 558 (797)
+....++|||+||++++++++|+++|++||.|. .|+|+.|+.+++++|||||+|.+.++|++||+.|||+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred ccceEEEEecCCCCCCC
Q 040243 559 EGRTIAVRVAGKPPQPT 575 (797)
Q Consensus 559 ~Gr~L~V~~A~~~~~~~ 575 (797)
+|+.|+|+|++.+....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998765543
No 31
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=149.55 Aligned_cols=87 Identities=33% Similarity=0.418 Sum_probs=82.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++||+.||++.|+|+.|+|+|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 040243 569 GKPPQPT 575 (797)
Q Consensus 569 ~~~~~~~ 575 (797)
.......
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8766544
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.5e-17 Score=150.39 Aligned_cols=89 Identities=35% Similarity=0.573 Sum_probs=82.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceee---ccceE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRL---EGRTI 563 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l---~Gr~L 563 (797)
.+...++|||+||+.++++++|+++|++||.|.+|+|+.|+.++++||||||+|.+.++|++||+.||+..+ +|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456788999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred EEEecCCCCCCC
Q 040243 564 AVRVAGKPPQPT 575 (797)
Q Consensus 564 ~V~~A~~~~~~~ 575 (797)
+|+|+.......
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998766543
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=5e-17 Score=146.67 Aligned_cols=87 Identities=28% Similarity=0.481 Sum_probs=81.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeecc---ceEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEG---RTIA 564 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~G---r~L~ 564 (797)
....++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++||+.|||..|.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999999999999998 9999
Q ss_pred EEecCCCCCCC
Q 040243 565 VRVAGKPPQPT 575 (797)
Q Consensus 565 V~~A~~~~~~~ 575 (797)
|+||.......
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99998766544
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=148.75 Aligned_cols=87 Identities=37% Similarity=0.643 Sum_probs=81.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.||++.|+|+.|+|+|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 040243 569 GKPPQPT 575 (797)
Q Consensus 569 ~~~~~~~ 575 (797)
+......
T Consensus 90 ~~~~~~~ 96 (102)
T 1x5s_A 90 GKSSDNR 96 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8765543
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=149.69 Aligned_cols=86 Identities=24% Similarity=0.390 Sum_probs=81.2
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
||..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997543
No 36
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=146.85 Aligned_cols=86 Identities=20% Similarity=0.412 Sum_probs=80.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCC-CcccceEEEEecCHHHHHHHHHhcCceeeccceEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT-GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~T-GksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V 565 (797)
.....++|||+||++++++++|+++|++|| |.+|+|++++.+ |+++|||||+|.+.++|++|| .|++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 999999999988 999999999999999999999 99999999999999
Q ss_pred EecCCCCCC
Q 040243 566 RVAGKPPQP 574 (797)
Q Consensus 566 ~~A~~~~~~ 574 (797)
+++..+...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 37
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=5.6e-17 Score=149.58 Aligned_cols=83 Identities=33% Similarity=0.582 Sum_probs=79.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|||+.|+|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 040243 567 VAG 569 (797)
Q Consensus 567 ~A~ 569 (797)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=2.2e-17 Score=143.05 Aligned_cols=81 Identities=36% Similarity=0.476 Sum_probs=78.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 040243 569 G 569 (797)
Q Consensus 569 ~ 569 (797)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=146.47 Aligned_cols=86 Identities=26% Similarity=0.516 Sum_probs=80.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCC---CCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRV---TGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~---TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
..++|||+||++++++++|+++|++||.|.+|+|++++. |++++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467899999999999999999999999999999999987 77999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|+.......
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 998766544
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=7.3e-18 Score=151.51 Aligned_cols=82 Identities=20% Similarity=0.401 Sum_probs=76.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCC--EEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCce----eeccce
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGD--IVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGY----RLEGRT 562 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~--I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~----~l~Gr~ 562 (797)
..-.||||+||++++|+++|+++|++||. |.+|+|++|+.||++||||||+|.+.++|++||+.|||. .|+||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45569999999999999999999999995 678999999999999999999999999999999999986 599999
Q ss_pred EEEEecCC
Q 040243 563 IAVRVAGK 570 (797)
Q Consensus 563 L~V~~A~~ 570 (797)
|+|+||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999974
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-17 Score=144.61 Aligned_cols=87 Identities=28% Similarity=0.444 Sum_probs=79.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++||+.|+++.|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 445678999999999999999999999999999999999864 389999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|+..+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998765544
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=145.87 Aligned_cols=83 Identities=33% Similarity=0.525 Sum_probs=78.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|..++. ++++|||||+|.+.++|++||+.||+..|+|+.|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445678999999999999999999999999999999999985 9999999999999999999999999999999999999
Q ss_pred ecCC
Q 040243 567 VAGK 570 (797)
Q Consensus 567 ~A~~ 570 (797)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 43
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=154.87 Aligned_cols=87 Identities=21% Similarity=0.429 Sum_probs=80.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEE--EEEEecCCCCcccceEEEEecCHHHHHHHHHhcCce----eecc
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVM--AKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGY----RLEG 560 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~--v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~----~l~G 560 (797)
.+...++|||+||++++++++|+++|++||.|.. |+|++|+.||++||||||+|.+. +|++||+.|||+ .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4456789999999999999999999999999977 99999999999999999999999 999999999999 9999
Q ss_pred ceEEEEecCCCCCC
Q 040243 561 RTIAVRVAGKPPQP 574 (797)
Q Consensus 561 r~L~V~~A~~~~~~ 574 (797)
+.|+|+|++.....
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999875443
No 44
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-17 Score=145.76 Aligned_cols=86 Identities=37% Similarity=0.606 Sum_probs=81.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEE-EEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMA-KVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v-~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
..++|||+||++++++++|+++|++||.|.+| +|++|+.+++++|||||+|.+.++|++||+.|||..|+|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46799999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 040243 569 GKPPQPT 575 (797)
Q Consensus 569 ~~~~~~~ 575 (797)
..+....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 8766543
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=144.21 Aligned_cols=86 Identities=27% Similarity=0.485 Sum_probs=79.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++++.+ ++|||||+|.+.++|++||+.|++..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 4567889999999999999999999999999999999999643 79999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|+..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99876543
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=144.94 Aligned_cols=85 Identities=21% Similarity=0.435 Sum_probs=77.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|.. +++++|||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 455678999999999999999999999999999999955 45689999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|++.....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99876543
No 47
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.5e-17 Score=155.73 Aligned_cols=85 Identities=25% Similarity=0.356 Sum_probs=80.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+..+.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 97654
No 48
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=3.7e-17 Score=145.52 Aligned_cols=83 Identities=27% Similarity=0.560 Sum_probs=79.4
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecCC
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGK 570 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~~ 570 (797)
.++|||+||+.++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|++||+.|+|..|+|+.|+|+||..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 040243 571 PPQ 573 (797)
Q Consensus 571 ~~~ 573 (797)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 49
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=143.34 Aligned_cols=87 Identities=26% Similarity=0.466 Sum_probs=79.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|++||+ +++.|+|+.|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999998 4789999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|+..+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqg_A 89 LPNSKQSQD 97 (103)
T ss_dssp CCCTTCCCC
T ss_pred ecCCCCcCC
Confidence 998765543
No 50
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=145.88 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=78.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEE--------EEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVM--------AKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE 559 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~--------v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~ 559 (797)
....++|||+||++++++++|+++|++||.|.+ |+|++|+.+|+++|||||+|.+.++|++||+.|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456789999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cceEEEEecC
Q 040243 560 GRTIAVRVAG 569 (797)
Q Consensus 560 Gr~L~V~~A~ 569 (797)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=149.48 Aligned_cols=86 Identities=34% Similarity=0.500 Sum_probs=80.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 040243 568 AGKPPQP 574 (797)
Q Consensus 568 A~~~~~~ 574 (797)
++.+...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9866543
No 52
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=9.5e-17 Score=152.24 Aligned_cols=89 Identities=35% Similarity=0.563 Sum_probs=83.1
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++++.++++||||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|++......
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998765543
No 53
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=146.01 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 040243 569 GKP 571 (797)
Q Consensus 569 ~~~ 571 (797)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=1.8e-17 Score=149.35 Aligned_cols=81 Identities=26% Similarity=0.374 Sum_probs=77.8
Q ss_pred CCcEEEEecCCC------CCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeecc-ce
Q 040243 490 DDTNLYIGYLPP------TLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEG-RT 562 (797)
Q Consensus 490 ~~~tLfVgNLp~------~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~G-r~ 562 (797)
..++|||+|||. ++++++|+++|++||.|.+|+|++|+.||++||||||+|.+.++|++||+.|||+.|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEecCC
Q 040243 563 IAVRVAGK 570 (797)
Q Consensus 563 L~V~~A~~ 570 (797)
|+|.+|..
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999853
No 55
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=4.3e-17 Score=148.53 Aligned_cols=86 Identities=27% Similarity=0.410 Sum_probs=81.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|++||+.|+|..|+|+.|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
|+..+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997554
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=145.26 Aligned_cols=88 Identities=31% Similarity=0.493 Sum_probs=81.5
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhc-CCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCcee-eccceEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFST-FGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYR-LEGRTIA 564 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~-fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~-l~Gr~L~ 564 (797)
.....++|||+||++++++++|+++|++ ||.|.+|+|++|+ +|+++|||||+|.+.++|++||+.|++.. |+|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999999 99999999999999999999999999999 9999999
Q ss_pred EEecCCCCCCC
Q 040243 565 VRVAGKPPQPT 575 (797)
Q Consensus 565 V~~A~~~~~~~ 575 (797)
|+++..+....
T Consensus 84 v~~a~~~~~~~ 94 (104)
T 2dhg_A 84 LSVAIPKASRV 94 (104)
T ss_dssp CCBCCCCCSCC
T ss_pred EEEccCCCcCC
Confidence 99997665443
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=5.9e-17 Score=149.62 Aligned_cols=81 Identities=36% Similarity=0.579 Sum_probs=75.6
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecCC
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGK 570 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~~ 570 (797)
.++|||+||++++++++|+++|++||.|.+|+|++|+ +.+||||||+|.+.++|++||+.|+|+.|+|+.|+|+++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4589999999999999999999999999999999996 55899999999999999999999999999999999999976
Q ss_pred CCC
Q 040243 571 PPQ 573 (797)
Q Consensus 571 ~~~ 573 (797)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 58
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=3.6e-16 Score=145.73 Aligned_cols=87 Identities=24% Similarity=0.336 Sum_probs=81.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 040243 568 AGKPPQPT 575 (797)
Q Consensus 568 A~~~~~~~ 575 (797)
|.......
T Consensus 111 a~~~~~~~ 118 (124)
T 2kt5_A 111 VASQIDLE 118 (124)
T ss_dssp ECCTTCCC
T ss_pred eCCCCCCC
Confidence 98655433
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.1e-17 Score=144.58 Aligned_cols=84 Identities=33% Similarity=0.603 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEE-EEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccce----E
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIV-MAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRT----I 563 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~-~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~----L 563 (797)
...++|||+||++++++++|+++|++||.|. +|+|++|+.+++++|||||+|.+.++|++||+.|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEecCCCC
Q 040243 564 AVRVAGKPP 572 (797)
Q Consensus 564 ~V~~A~~~~ 572 (797)
+|+||+...
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997554
No 60
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=5.3e-17 Score=158.56 Aligned_cols=82 Identities=28% Similarity=0.428 Sum_probs=77.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCC--CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFG--DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG--~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
...++|||+||++++++++|+++|++|| .|.+|+|++|+.||++||||||+|.+.++|++||+.|||+.|+|+.|+|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 040243 567 VAGK 570 (797)
Q Consensus 567 ~A~~ 570 (797)
+|..
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9864
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=9.3e-17 Score=140.02 Aligned_cols=81 Identities=28% Similarity=0.518 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.+...++|||+||++++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|++||+ +++..|+|+.|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44577899999999999999999999999999999999999999999999999999999999996 58889999999999
Q ss_pred ec
Q 040243 567 VA 568 (797)
Q Consensus 567 ~A 568 (797)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 62
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=8.4e-17 Score=147.21 Aligned_cols=84 Identities=33% Similarity=0.612 Sum_probs=80.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||+.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|+|..|+|+.|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 040243 568 AGKP 571 (797)
Q Consensus 568 A~~~ 571 (797)
++.+
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9765
No 63
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=146.88 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=79.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHH---HHhhcCCCEEEEEEEecCCCC---cccceEEEEecCHHHHHHHHHhcCceeecc
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLI---RLFSTFGDIVMAKVIKDRVTG---MSKGYGFVKYADIQMANNAIASMNGYRLEG 560 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~---~~Fs~fG~I~~v~v~~dk~TG---ksrGfaFV~F~s~e~A~~AI~~LnG~~l~G 560 (797)
+....++|||+||++++++++|+ ++|++||.|.+|+|++++.++ +++|||||+|.+.++|++||+.|||+.|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 45567899999999999999999 999999999999999998755 456999999999999999999999999999
Q ss_pred ceEEEEecCCCCC
Q 040243 561 RTIAVRVAGKPPQ 573 (797)
Q Consensus 561 r~L~V~~A~~~~~ 573 (797)
+.|+|+||..+..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987653
No 64
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=4.1e-17 Score=155.34 Aligned_cols=88 Identities=30% Similarity=0.463 Sum_probs=82.5
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|++.....
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99865543
No 65
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-17 Score=147.25 Aligned_cols=85 Identities=31% Similarity=0.577 Sum_probs=80.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
+...++|||+||++++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+....
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98655
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.2e-16 Score=139.65 Aligned_cols=82 Identities=18% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
.+.++|||+||++++++++|+++|++||.|.+|++..++.+++++|||||+|.+.++|++|+ .|+|..|+|+.|+|+++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999999999999999999999999999999999 89999999999999998
Q ss_pred CCC
Q 040243 569 GKP 571 (797)
Q Consensus 569 ~~~ 571 (797)
+..
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 753
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=9e-17 Score=139.86 Aligned_cols=83 Identities=29% Similarity=0.529 Sum_probs=78.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCc-ccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGM-SKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGk-srGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
..++|||+||+.++++++|+++|++||.|.+|+|+.++.++. ++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999988777 9999999999999999999999999999999999999
Q ss_pred CCCC
Q 040243 569 GKPP 572 (797)
Q Consensus 569 ~~~~ 572 (797)
..+.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 68
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.6e-16 Score=143.89 Aligned_cols=80 Identities=28% Similarity=0.397 Sum_probs=77.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++||+.|+|..|+|+.|+|+||
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 467899999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred C
Q 040243 569 G 569 (797)
Q Consensus 569 ~ 569 (797)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 69
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=145.48 Aligned_cols=87 Identities=21% Similarity=0.416 Sum_probs=80.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+. +++.|+|+.|+|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred cCCCCCCC
Q 040243 568 AGKPPQPT 575 (797)
Q Consensus 568 A~~~~~~~ 575 (797)
+..+....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98765543
No 70
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=141.03 Aligned_cols=84 Identities=29% Similarity=0.453 Sum_probs=76.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999987 56666 589999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|++.+...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99876543
No 71
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=141.80 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=76.5
Q ss_pred CCCcEEEEecCCCCCcHHHHH----HHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLI----RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIA 564 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~----~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~ 564 (797)
.+.++|||+||++++++++|+ ++|++||.|.+|+|+.|+.+ ||||||+|.+.++|++||+.|||..|+|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999999865 89999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 040243 565 VRVAGKPPQ 573 (797)
Q Consensus 565 V~~A~~~~~ 573 (797)
|++|+....
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999976544
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=5e-17 Score=143.84 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=76.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||++++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++||+.||++.|+|+.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 040243 570 K 570 (797)
Q Consensus 570 ~ 570 (797)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 73
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.1e-16 Score=149.23 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=82.2
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
||......
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99765543
No 74
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.1e-16 Score=142.88 Aligned_cols=83 Identities=28% Similarity=0.610 Sum_probs=78.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceee--------
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRL-------- 558 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l-------- 558 (797)
.+...++|||+||++++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+.|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred ccceEEEEecCC
Q 040243 559 EGRTIAVRVAGK 570 (797)
Q Consensus 559 ~Gr~L~V~~A~~ 570 (797)
.++.|+|+||..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 578899999974
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=1.8e-16 Score=139.39 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=77.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|.++ +++++|||||+|.+.++|++||+.|++..|+|+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999985 8999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
+....
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 86554
No 76
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=146.63 Aligned_cols=84 Identities=29% Similarity=0.440 Sum_probs=79.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
+...++|||+||++++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++|| .|||+.|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+....
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 86543
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=137.81 Aligned_cols=82 Identities=17% Similarity=0.324 Sum_probs=77.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|++||+ |||..|+|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3567899999999999999999999999 9999999999 699999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98654
No 78
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=2.1e-16 Score=144.65 Aligned_cols=85 Identities=27% Similarity=0.451 Sum_probs=76.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|++++.||++||||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999976 5999999999999
Q ss_pred cCCCCC
Q 040243 568 AGKPPQ 573 (797)
Q Consensus 568 A~~~~~ 573 (797)
+..+..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 986543
No 79
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-17 Score=141.16 Aligned_cols=80 Identities=29% Similarity=0.515 Sum_probs=76.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||++++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999988764
No 80
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=5.7e-17 Score=167.84 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=77.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCC--CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFG--DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG--~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
..++|||+||++++++++|+++|++|| .|.+|+|++|+.||++||||||+|.+.++|++||+.||++.|+|+.|+|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 040243 568 AGK 570 (797)
Q Consensus 568 A~~ 570 (797)
|+.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 865
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=142.59 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=79.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCC-EEEEEEE-ecCCCCcccceEEEEecCHHHHHHHHHhcC--ceeeccceEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGD-IVMAKVI-KDRVTGMSKGYGFVKYADIQMANNAIASMN--GYRLEGRTIA 564 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~-I~~v~v~-~dk~TGksrGfaFV~F~s~e~A~~AI~~Ln--G~~l~Gr~L~ 564 (797)
...++|||+||++++++++|+++|++||. |.+|.|+ .++.+|++||||||+|.+.++|++||+.|+ +..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 899999999999999999999999999996 5899999999
Q ss_pred EEecCCCCC
Q 040243 565 VRVAGKPPQ 573 (797)
Q Consensus 565 V~~A~~~~~ 573 (797)
|+||.....
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999986654
No 82
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=1.4e-16 Score=152.42 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=76.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCC---EEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGD---IVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~---I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L 563 (797)
.....++|||+||++++|+++|+++|++||. |.+|+|++|+. |++||||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999999 99999999999
Q ss_pred EEEecCC
Q 040243 564 AVRVAGK 570 (797)
Q Consensus 564 ~V~~A~~ 570 (797)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999864
No 83
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=141.51 Aligned_cols=83 Identities=20% Similarity=0.313 Sum_probs=76.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEE-EEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVM-AKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~-v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
....++|||+||++++++++|+++|++||.|.+ |+|+.+ .+|+++|||||+|.+.++|++||+. ++..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 456789999999999999999999999999998 889898 6999999999999999999999987 9999999999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987544
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=6.9e-17 Score=136.92 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=72.8
Q ss_pred EEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 493 tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
+|||+||++++++++|+++|++||.|.+|++..++.+|+++|||||+|.+.++|++|++ |++..|+|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999997 9999999999999986
No 85
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=149.08 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=76.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|++||+ ||+..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3466899999999999999999999999999997777777899999999999999999999999 999999999999999
Q ss_pred cCCC
Q 040243 568 AGKP 571 (797)
Q Consensus 568 A~~~ 571 (797)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 86
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.9e-16 Score=140.61 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=73.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeecc-----ce
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEG-----RT 562 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~G-----r~ 562 (797)
....++|||+||++++++++|+++|++||.|.+|+|+.| |||||+|.+.++|++||+.||++.|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999887 899999999999999999999999999 99
Q ss_pred EEEEecCCCCC
Q 040243 563 IAVRVAGKPPQ 573 (797)
Q Consensus 563 L~V~~A~~~~~ 573 (797)
|+|++|..+..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987544
No 87
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=142.48 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=75.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||. ++|+|++|+ +|++||||||+|.+.++|++||+ +|+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 346689999999999999999999999994 599999998 99999999999999999999995 799999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87554
No 88
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=145.70 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=77.7
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCE-EEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDI-VMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I-~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
....++|||+||++++++++|+++|+.||.| .+|+|++|+ +|++||||||+|.+.++|++||+. |+..|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4567899999999999999999999999999 899999999 999999999999999999999987 9999999999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987544
No 89
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=3.6e-17 Score=143.50 Aligned_cols=82 Identities=34% Similarity=0.536 Sum_probs=74.6
Q ss_pred cEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecCCC
Q 040243 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGKP 571 (797)
Q Consensus 492 ~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~~~ 571 (797)
++|||+||+.++++++|+++|++||.|.+|+|.+++.+|+++|||||+|.+.+ |++|++.|||..|+|+.|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999865
Q ss_pred CCC
Q 040243 572 PQP 574 (797)
Q Consensus 572 ~~~ 574 (797)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 90
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=3.6e-16 Score=145.36 Aligned_cols=83 Identities=25% Similarity=0.462 Sum_probs=78.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++|| .|+|..|+|+.|+|+|+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred CCCC
Q 040243 569 GKPP 572 (797)
Q Consensus 569 ~~~~ 572 (797)
+...
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7544
No 91
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=139.44 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=77.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|+.|+ +|+++.++.+++++|||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 445678999999999999999999999874 67888999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|++.+...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876554
No 92
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=143.85 Aligned_cols=81 Identities=15% Similarity=0.269 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.+...++|||+||++++|+++|+++|++||.|.+|+|++|+. |++||||||+|.+.++|++||+ +++..|+|+.|+|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445678999999999999999999999999999999999986 9999999999999999999998 89999999999999
Q ss_pred ecC
Q 040243 567 VAG 569 (797)
Q Consensus 567 ~A~ 569 (797)
|+.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 864
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=144.22 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=75.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecC-CCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDR-VTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk-~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
....++|||+||++++++++|+++|++|| |.+|+|++++ .+|+++|||||+|.+.++|++|| .|+|..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35678999999999999999999999999 9999999998 69999999999999999999999 899999999999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
+++...
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 997653
No 94
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=4.3e-16 Score=150.88 Aligned_cols=85 Identities=28% Similarity=0.388 Sum_probs=80.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|++||+.||++.|+|+.|+|+||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86543
No 95
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=2.8e-16 Score=145.94 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=77.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCC---EEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGD---IVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~---I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L 563 (797)
.....++|||+||++++++++|+++|+.||. |.+|+|++|+. |++||||||+|.+.++|++||+ |+++.|+|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999998 99999999999
Q ss_pred EEEecCCC
Q 040243 564 AVRVAGKP 571 (797)
Q Consensus 564 ~V~~A~~~ 571 (797)
+|.++...
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998654
No 96
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.65 E-value=3.5e-16 Score=151.34 Aligned_cols=85 Identities=29% Similarity=0.455 Sum_probs=80.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
.....
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86543
No 97
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.5e-17 Score=136.42 Aligned_cols=76 Identities=30% Similarity=0.554 Sum_probs=73.8
Q ss_pred cEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 492 ~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
++|||+||++++++++|+++|++||.|.+|++..++.+|+++|||||+|.+.++|++|++.++ ..|+|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999997
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=141.06 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=72.9
Q ss_pred CCCCcEEEEecCCC-CCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCce--eeccceEE
Q 040243 488 ELDDTNLYIGYLPP-TLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGY--RLEGRTIA 564 (797)
Q Consensus 488 ~~~~~tLfVgNLp~-~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~--~l~Gr~L~ 564 (797)
....++|||+||++ .+++++|+++|++||.|.+|+|++++ |||||+|.+.++|++||+.|++. .|+|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 99999999999999999999998764 89999999999999999999875 59999999
Q ss_pred EEecCCCCCC
Q 040243 565 VRVAGKPPQP 574 (797)
Q Consensus 565 V~~A~~~~~~ 574 (797)
|.||+.....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9999865543
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=6.1e-16 Score=151.56 Aligned_cols=87 Identities=26% Similarity=0.404 Sum_probs=81.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|..|.|+.++.||+++|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 040243 567 VAGKPPQ 573 (797)
Q Consensus 567 ~A~~~~~ 573 (797)
|+.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976544
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=140.35 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=75.6
Q ss_pred CCCCcEEEEecCCCCC------cHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccc
Q 040243 488 ELDDTNLYIGYLPPTL------DDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGR 561 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~v------te~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr 561 (797)
+...++|||+||++.+ ++++|+++|++||.|.+|+|. +.+|++||||||+|.+.++|++||+.|||+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3456899999999999 789999999999999999988 46899999999999999999999999999999999
Q ss_pred -eEEEEecCCC
Q 040243 562 -TIAVRVAGKP 571 (797)
Q Consensus 562 -~L~V~~A~~~ 571 (797)
.|+|++|...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 101
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.2e-15 Score=136.85 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=73.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcC--ceeeccceEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN--GYRLEGRTIAV 565 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~Ln--G~~l~Gr~L~V 565 (797)
....++|||+||++.+++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++||+.|+ +..|.|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999998875 6999999999999999999774 67899999999
Q ss_pred EecCCCCCCC
Q 040243 566 RVAGKPPQPT 575 (797)
Q Consensus 566 ~~A~~~~~~~ 575 (797)
+||+.+....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998665443
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=142.12 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcC--ceeeccceEEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN--GYRLEGRTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~Ln--G~~l~Gr~L~V~ 566 (797)
...++|||+||++.+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+.|+ +..|+|+.|+|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999999876 5999999999999999999886 478999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
||+.+...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99865543
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.3e-16 Score=141.38 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=77.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||+.++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|++.|+|..|+|+.|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999985 4599999999999999999999999999999999999
Q ss_pred ecCCC
Q 040243 567 VAGKP 571 (797)
Q Consensus 567 ~A~~~ 571 (797)
+++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99764
No 104
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=134.65 Aligned_cols=79 Identities=29% Similarity=0.512 Sum_probs=72.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec--cceEEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE--GRTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~--Gr~L~V~ 566 (797)
...++|||+||++++++++|+++|++||.|.+|++..+ +|||||+|.+.++|++||+.||+..|+ |+.|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45679999999999999999999999999999998764 689999999999999999999999999 9999999
Q ss_pred ecCCCCC
Q 040243 567 VAGKPPQ 573 (797)
Q Consensus 567 ~A~~~~~ 573 (797)
|++.+..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9986543
No 105
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-16 Score=142.25 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=76.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.. .++.++.+|++||||||+|.+.++|++||+ |||..|+|+.|+|+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999999988 777888899999999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
..+..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 106
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=135.47 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=72.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++||+.|||..|+|+.|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999996 666654 5889999999999999999999999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
++.+.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98654
No 107
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=132.05 Aligned_cols=79 Identities=29% Similarity=0.580 Sum_probs=73.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|. ||||||+|.+.++|++||+.|++..|+|+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 467899999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 040243 569 GKPPQPT 575 (797)
Q Consensus 569 ~~~~~~~ 575 (797)
..+....
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 8766543
No 108
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=5e-16 Score=134.02 Aligned_cols=74 Identities=28% Similarity=0.484 Sum_probs=68.7
Q ss_pred CcEEEEecCCCCC------cHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccc-eE
Q 040243 491 DTNLYIGYLPPTL------DDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGR-TI 563 (797)
Q Consensus 491 ~~tLfVgNLp~~v------te~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr-~L 563 (797)
+++|||+||+..+ ++++|+++|++||.|.+|+|. +.+|++||||||+|.+.++|++||+.|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 45899999999999999999999999999999999 88
Q ss_pred EEE
Q 040243 564 AVR 566 (797)
Q Consensus 564 ~V~ 566 (797)
+|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 773
No 109
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.1e-15 Score=135.25 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=69.2
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..-|||+||++.+||++|+++|.+||.|.++++.. +||||||+|.+.++|++||+.||+..|+|+.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45799999999999999999999999999999865 67999999999999999999999999999999999984
No 110
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9e-16 Score=140.67 Aligned_cols=87 Identities=23% Similarity=0.458 Sum_probs=75.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.++.+..+..+++++|||||+|.+.++|++||+.|+|..|+|+.|+|+||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999954433333338899999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 040243 569 GKPPQPT 575 (797)
Q Consensus 569 ~~~~~~~ 575 (797)
..+....
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 8766544
No 111
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=140.39 Aligned_cols=79 Identities=23% Similarity=0.322 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
.+.++|||+||++++++++|+++|+.| .|.+|+|++|+. |++||||||+|.+.++|++|| .||+..|+||.|+|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 456899999999999999999999999 899999999985 999999999999999999999 69999999999999887
Q ss_pred CC
Q 040243 569 GK 570 (797)
Q Consensus 569 ~~ 570 (797)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 112
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=143.53 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCcHHHHH----HHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLI----RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIA 564 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~----~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~ 564 (797)
...++|||+||++.+++++|+ ++|++||.|.+|.+.+ ++++||||||+|.+.++|++||+.|||..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 346799999999999999876 7999999999987743 789999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 040243 565 VRVAGKPP 572 (797)
Q Consensus 565 V~~A~~~~ 572 (797)
|+||+.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 113
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=137.09 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=71.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCce--eeccceEEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGY--RLEGRTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~--~l~Gr~L~V~ 566 (797)
...++|||+||++.+++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++||+.|++. .|+|+.|+|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45679999999999999999999999999999998764 699999999999999999988765 4999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|++.+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99865543
No 114
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=134.29 Aligned_cols=82 Identities=27% Similarity=0.544 Sum_probs=74.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|.++ ||||||+|.+.++|++||+.|+|+.|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 356789999999999999999999999999999999864 68999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 040243 568 AGKPPQPT 575 (797)
Q Consensus 568 A~~~~~~~ 575 (797)
++.+....
T Consensus 86 a~~~~~~~ 93 (99)
T 2cpj_A 86 ACHSASLT 93 (99)
T ss_dssp SSCCSCCC
T ss_pred cCCCCCCC
Confidence 98765433
No 115
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=136.89 Aligned_cols=82 Identities=30% Similarity=0.547 Sum_probs=75.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||+.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++||+.|+|+.|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999886 68999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 040243 568 AGKPPQPT 575 (797)
Q Consensus 568 A~~~~~~~ 575 (797)
++......
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 98766543
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.8e-15 Score=131.39 Aligned_cols=81 Identities=21% Similarity=0.432 Sum_probs=73.9
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++ +||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 445678999999999999999999999999999999874 499999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 040243 567 VAGKPPQPT 575 (797)
Q Consensus 567 ~A~~~~~~~ 575 (797)
|++.+....
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 998765544
No 117
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=3e-16 Score=132.76 Aligned_cols=75 Identities=16% Similarity=0.387 Sum_probs=72.1
Q ss_pred EEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 493 NLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 493 tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
+|||+||++++++++|+++|++||.|.+|++.+++.+|+++|||||+|.+.++|++||+. ++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999984 899999999999986
No 118
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=5e-15 Score=147.42 Aligned_cols=83 Identities=25% Similarity=0.365 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++.+++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+.|||..|+|+.|+|+||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred CCCC
Q 040243 569 GKPP 572 (797)
Q Consensus 569 ~~~~ 572 (797)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7543
No 119
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=129.91 Aligned_cols=77 Identities=27% Similarity=0.427 Sum_probs=71.8
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhc-CceeeccceEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASM-NGYRLEGRTIAV 565 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~L-nG~~l~Gr~L~V 565 (797)
.+...++|||+||+.++++++|+++|++||.|.+|++.++ ||||||+|.+.++|++|++.| ++..|+|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 4456789999999999999999999999999999999874 699999999999999999999 999999999999
Q ss_pred EecC
Q 040243 566 RVAG 569 (797)
Q Consensus 566 ~~A~ 569 (797)
+||+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 120
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=9e-16 Score=145.02 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=73.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEE--EEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIV--MAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~--~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V 565 (797)
....++|||+||++++++++|+++|+.| .|. +|+|++|+. |++||||||+|.+.++|++||+. ++..|+||.|+|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3467899999999999999999999999 677 899999986 99999999999999999999985 779999999999
Q ss_pred EecCC
Q 040243 566 RVAGK 570 (797)
Q Consensus 566 ~~A~~ 570 (797)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 121
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.9e-15 Score=130.76 Aligned_cols=80 Identities=26% Similarity=0.404 Sum_probs=72.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+|| ++++++|+++|++||.|.+|+|. +++|||||+|.+.++|++||+.|+|..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346789999996 89999999999999999999984 5679999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 040243 568 AGKPPQPT 575 (797)
Q Consensus 568 A~~~~~~~ 575 (797)
+..+....
T Consensus 84 a~~~~~~~ 91 (97)
T 1x5p_A 84 ARKQPMLD 91 (97)
T ss_dssp CSSCCCCC
T ss_pred CCCCCCCC
Confidence 98765443
No 122
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=7.8e-15 Score=132.25 Aligned_cols=79 Identities=30% Similarity=0.488 Sum_probs=72.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|+ +|||||+|.+.++|++||+.|+++.|+|+.|+|+|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 356799999999999999999999999999999986 469999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 040243 569 GKPPQPT 575 (797)
Q Consensus 569 ~~~~~~~ 575 (797)
..+....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8766543
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.5e-15 Score=136.11 Aligned_cols=76 Identities=29% Similarity=0.450 Sum_probs=71.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||+.++++++|+++|++||.|.+|++. ++||||||+|.+.++|++||+.|||..|+|+.|+|+||
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346899999999999999999999999999999987 35799999999999999999999999999999999998
Q ss_pred CC
Q 040243 569 GK 570 (797)
Q Consensus 569 ~~ 570 (797)
+.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 124
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=7.8e-17 Score=148.47 Aligned_cols=87 Identities=24% Similarity=0.342 Sum_probs=81.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEE--------EEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVM--------AKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE 559 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~--------v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~ 559 (797)
....++|||+||++++++++|+++|++||.|.+ |+|+.|+.+++++|||||+|.+.++|++||+.|||..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cceEEEEecCCCCCC
Q 040243 560 GRTIAVRVAGKPPQP 574 (797)
Q Consensus 560 Gr~L~V~~A~~~~~~ 574 (797)
|+.|+|+|+..+...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 125
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=7.9e-16 Score=140.15 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=76.7
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCC---EEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGD---IVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIA 564 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~---I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~ 564 (797)
....++|||+||++++++++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ |++..|+|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 356789999999999999999999999998 89999999986 9999999999999999999998 999999999999
Q ss_pred EEecCCC
Q 040243 565 VRVAGKP 571 (797)
Q Consensus 565 V~~A~~~ 571 (797)
|.++...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 126
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.7e-15 Score=134.52 Aligned_cols=82 Identities=26% Similarity=0.461 Sum_probs=75.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHH----HHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLI----RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~----~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L 563 (797)
....++|||+||++++++++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|++|++.|+|..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4467899999999999999999 9999999999998873 68899999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 040243 564 AVRVAGKPP 572 (797)
Q Consensus 564 ~V~~A~~~~ 572 (797)
+|+|+....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998654
No 127
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=1.9e-15 Score=139.63 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=71.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCC-CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFG-DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG-~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
..++|||+||++++++++|+++|++|| .|..+.|..+ +++|||||+|.+.++|++||+.|||..|+|+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 467999999999999999999999999 9999988543 48999999999999999999999999999999999998
Q ss_pred CCC
Q 040243 569 GKP 571 (797)
Q Consensus 569 ~~~ 571 (797)
..+
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 128
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=129.48 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcC--CCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTF--GDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~f--G~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V 565 (797)
....++|||+||++++++++|+++|++| |.|.+|++. ||||||+|.+.++|++||+.|||+.|+|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999998863 579999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 040243 566 RVAGKPPQP 574 (797)
Q Consensus 566 ~~A~~~~~~ 574 (797)
+|++.....
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 129
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=139.60 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=73.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCc--eeeccceEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNG--YRLEGRTIAV 565 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG--~~l~Gr~L~V 565 (797)
....++|||+||++.+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+.|++ ..|.|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999876 69999999999999999999885 5899999999
Q ss_pred EecCCCCCC
Q 040243 566 RVAGKPPQP 574 (797)
Q Consensus 566 ~~A~~~~~~ 574 (797)
+||+.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999865543
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=134.99 Aligned_cols=78 Identities=23% Similarity=0.478 Sum_probs=73.4
Q ss_pred cEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecCCC
Q 040243 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGKP 571 (797)
Q Consensus 492 ~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~~~ 571 (797)
++|||+||++++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++||+.|+|..|+|+.|+|+|++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 7899999999999999999999999999999999999876
Q ss_pred CCC
Q 040243 572 PQP 574 (797)
Q Consensus 572 ~~~ 574 (797)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=133.14 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=74.1
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.+...++|||+||++++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+.|+|..|+|+.|+|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 3489999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 040243 567 VAGKPPQ 573 (797)
Q Consensus 567 ~A~~~~~ 573 (797)
++..+..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9976544
No 132
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=6.2e-15 Score=147.99 Aligned_cols=86 Identities=35% Similarity=0.632 Sum_probs=80.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||+..+++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+||+.|||..|+|+.|+|+|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 040243 570 KPPQPT 575 (797)
Q Consensus 570 ~~~~~~ 575 (797)
.+....
T Consensus 204 ~~~~~~ 209 (216)
T 2qfj_A 204 TPPMPL 209 (216)
T ss_dssp SCSSTT
T ss_pred CCCCCC
Confidence 664433
No 133
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-16 Score=145.51 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=74.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCE----EEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDI----VMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I----~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L 563 (797)
....++|||+||++++++++|+++|++||.| .+|+|++|+ +|++||||||+|.+.++|++||+. ++..|+||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3467899999999999999999999999976 689999995 899999999999999999999986 9999999999
Q ss_pred EEEecCC
Q 040243 564 AVRVAGK 570 (797)
Q Consensus 564 ~V~~A~~ 570 (797)
+|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 134
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=6e-16 Score=148.59 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++|| |++|+|++|+. |++||||||+|.+.++|++|| .+|+..|+|+.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999 77999999985 999999999999999999999 7899999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87554
No 135
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.2e-15 Score=136.99 Aligned_cols=83 Identities=23% Similarity=0.509 Sum_probs=76.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
+...++|||+||++++++++|+++|++||.|.+|+|+.++ +|++||||||+|.+.++|++||+ ++..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999998 99999999999999
Q ss_pred cCCCCC
Q 040243 568 AGKPPQ 573 (797)
Q Consensus 568 A~~~~~ 573 (797)
+..+..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 136
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=7e-15 Score=131.75 Aligned_cols=77 Identities=23% Similarity=0.509 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCC-CCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 488 ELDDTNLYIGYLPP-TLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 488 ~~~~~tLfVgNLp~-~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
....++|||+||++ ++++++|+++|++||.|.+|+| ++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999998 9999999999999999999998 27999999999999999999999999999999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
|++...
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 997653
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=137.49 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=72.7
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
+.+.++|||+||++.+++++|+++|++||.|.+|.|.. ++|||||+|.+.++|++||+.|||+.|+|+.|+|+|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999998864 568999999999999999999999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
|....
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 97644
No 138
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=6.5e-15 Score=149.56 Aligned_cols=84 Identities=27% Similarity=0.462 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++||+.|++..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 040243 569 GKPP 572 (797)
Q Consensus 569 ~~~~ 572 (797)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6543
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=1.5e-14 Score=131.81 Aligned_cols=76 Identities=30% Similarity=0.609 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCC-CcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 490 DDTNLYIGYLPPT-LDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 490 ~~~tLfVgNLp~~-vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
..++|||+||+++ +++++|+++|++||.|.+|+| ++|||||+|.+.++|++||+.|++..|+|+.|+|+|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999998 5799999999999999999999999999999999999
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
+.+..
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75443
No 140
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.2e-15 Score=136.07 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCC-CcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCc--eeeccceEE
Q 040243 488 ELDDTNLYIGYLPPT-LDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNG--YRLEGRTIA 564 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~-vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG--~~l~Gr~L~ 564 (797)
....++|||+||+++ +++++|+++|++||.|.+|+|++ +||||||+|.+.++|++||+.|++ ..|+|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345789999999998 99999999999999999999974 469999999999999999998865 569999999
Q ss_pred EEecCCCCCCC
Q 040243 565 VRVAGKPPQPT 575 (797)
Q Consensus 565 V~~A~~~~~~~ 575 (797)
|.||+.+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998765543
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7e-15 Score=130.41 Aligned_cols=79 Identities=27% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEE-EEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMA-KVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v-~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
...++|||+||++++++++|+++|++||.|.+| .|+.++.+++ |||+|.+.++|++||+.|||+.|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999999999999999 5888876654 99999999999999999999999999999999
Q ss_pred cCCC
Q 040243 568 AGKP 571 (797)
Q Consensus 568 A~~~ 571 (797)
|..+
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9866
No 142
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=7.5e-15 Score=133.27 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCcee--eccceEEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYR--LEGRTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~--l~Gr~L~V~ 566 (797)
..+++|||+||++.+++++|+++|++||.|.+|++++ +||||||+|.+.++|.+||+.|++.. |.|+.|+|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3567999999999999999999999999999999975 36899999999999999999999875 789999999
Q ss_pred ecCCC
Q 040243 567 VAGKP 571 (797)
Q Consensus 567 ~A~~~ 571 (797)
|++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99864
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=128.64 Aligned_cols=79 Identities=18% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+ |+|+.|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 67776776 99999999999999999 9999999999999998
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
..+..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 75543
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1e-14 Score=139.76 Aligned_cols=82 Identities=38% Similarity=0.595 Sum_probs=78.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||+..+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|+||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 040243 569 GK 570 (797)
Q Consensus 569 ~~ 570 (797)
++
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 145
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.56 E-value=6.8e-15 Score=134.61 Aligned_cols=78 Identities=24% Similarity=0.553 Sum_probs=72.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
+...++|||+||++++++++|+++|++||.|.+|+|. +|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 040243 568 AGKPPQ 573 (797)
Q Consensus 568 A~~~~~ 573 (797)
++....
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 986543
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=1.2e-14 Score=139.47 Aligned_cols=82 Identities=40% Similarity=0.726 Sum_probs=78.4
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecCC
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGK 570 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~~ 570 (797)
.++|||+||+.++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|++|++.|+|..+.|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 040243 571 PP 572 (797)
Q Consensus 571 ~~ 572 (797)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=130.63 Aligned_cols=79 Identities=29% Similarity=0.466 Sum_probs=69.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCC-EEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCc-eeeccceEEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGD-IVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNG-YRLEGRTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~-I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG-~~l~Gr~L~V~ 566 (797)
...++|||+||++++++++|+++|++||. |..+.+ .++|||||+|.+.++|++||+.||| ..|+|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35679999999999999999999999999 555555 2579999999999999999999999 99999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|+..+...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876543
No 148
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=1.1e-14 Score=133.60 Aligned_cols=80 Identities=25% Similarity=0.426 Sum_probs=74.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|+|+++ +.++|||||+|.+.++|++||+.|||..|+|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35679999999999999999999999999999999875 456999999999999999999999999999999999998
Q ss_pred CCC
Q 040243 569 GKP 571 (797)
Q Consensus 569 ~~~ 571 (797)
...
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 753
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=127.18 Aligned_cols=78 Identities=26% Similarity=0.452 Sum_probs=72.1
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|++ +||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999873 4999999999999999999999999999999999
Q ss_pred cCCCCC
Q 040243 568 AGKPPQ 573 (797)
Q Consensus 568 A~~~~~ 573 (797)
+.....
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 986644
No 150
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.1e-15 Score=139.54 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=72.1
Q ss_pred cEEEEecC----CCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecC----HHH----HHHHHH--hcCcee
Q 040243 492 TNLYIGYL----PPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYAD----IQM----ANNAIA--SMNGYR 557 (797)
Q Consensus 492 ~tLfVgNL----p~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s----~e~----A~~AI~--~LnG~~ 557 (797)
++|||+|| ++.+++.+|+++|+.||+|.+|.++.|+.||+++|||||+|.+ .++ |.+||+ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999995 322 899998 889999
Q ss_pred eccceEEEEecCC
Q 040243 558 LEGRTIAVRVAGK 570 (797)
Q Consensus 558 l~Gr~L~V~~A~~ 570 (797)
|+|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998653
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=1.1e-14 Score=140.36 Aligned_cols=83 Identities=31% Similarity=0.552 Sum_probs=79.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||+.++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.|+|..++|+.|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 040243 570 KPP 572 (797)
Q Consensus 570 ~~~ 572 (797)
...
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 544
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.55 E-value=1.2e-14 Score=139.71 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=74.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+.|||..|+|+.|+|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999887 589999999999999999999999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+..+.
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97653
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=8.4e-15 Score=130.48 Aligned_cols=79 Identities=24% Similarity=0.519 Sum_probs=71.4
Q ss_pred CCCCcEEEEecCCC-CCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 488 ELDDTNLYIGYLPP-TLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 488 ~~~~~tLfVgNLp~-~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
....++|||+||++ ++++++|+++|++||.|.+|+|. ||||||+|.+.++|++||+.|+|..|.|+.|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 040243 567 VAGKPPQP 574 (797)
Q Consensus 567 ~A~~~~~~ 574 (797)
|+......
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99765543
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=1.2e-14 Score=127.50 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=70.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||++++++++|+++|++| .|.+++|. ++||||||+|.+.++|++||+.|||..++|+.|+|+|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 688999999999999999999999999999999999987
Q ss_pred CCC
Q 040243 570 KPP 572 (797)
Q Consensus 570 ~~~ 572 (797)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 155
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=3.2e-15 Score=142.67 Aligned_cols=83 Identities=23% Similarity=0.413 Sum_probs=72.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEE--E---EecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEE
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAK--V---IKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIA 564 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~--v---~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~ 564 (797)
..++|||+||++++++++|+++|++||.|..+. + +....+|+++|||||+|.+.++|.+||+.|||+.|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 457999999999999999999999999987741 1 11124799999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 040243 565 VRVAGKPP 572 (797)
Q Consensus 565 V~~A~~~~ 572 (797)
|+||+...
T Consensus 124 V~~a~~~~ 131 (143)
T 3egn_A 124 VQFARSAR 131 (143)
T ss_dssp EEECCCSC
T ss_pred EEECCCCC
Confidence 99997644
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.53 E-value=9.5e-15 Score=134.92 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=66.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccce-----E
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRT-----I 563 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~-----L 563 (797)
...++|||+||++++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++||+.|||+.|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999876 89999999999999999999999999998 7
Q ss_pred EEEecCC
Q 040243 564 AVRVAGK 570 (797)
Q Consensus 564 ~V~~A~~ 570 (797)
+|..+..
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 7776654
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.53 E-value=2.2e-14 Score=141.80 Aligned_cols=85 Identities=26% Similarity=0.443 Sum_probs=78.4
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+. ++..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999999999999999999999999999999999976 8999999999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987543
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=2.8e-14 Score=141.26 Aligned_cols=85 Identities=36% Similarity=0.658 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++++++|+++|++||.|.+|++.+++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
..+.+
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=1.7e-14 Score=139.70 Aligned_cols=80 Identities=39% Similarity=0.720 Sum_probs=77.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||+.++++++|+++|++||.|.++++.+++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+||.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999984
No 160
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=3e-14 Score=160.71 Aligned_cols=84 Identities=20% Similarity=0.410 Sum_probs=79.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||+++|++++|+++|++||.|..|.|+.++.||+++|||||+|.+.++|++||+.|||+.|+|+.|.|.|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 040243 570 KPPQ 573 (797)
Q Consensus 570 ~~~~ 573 (797)
....
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=1.5e-14 Score=139.35 Aligned_cols=81 Identities=23% Similarity=0.486 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||+.++++++|+++|++||.|.+++|+.++.+|+++|||||+|.+.++|.+|++ +++..|+|+.|+|+||.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999999999999999999999999999998 89999999999999997
Q ss_pred CC
Q 040243 570 KP 571 (797)
Q Consensus 570 ~~ 571 (797)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=5.1e-15 Score=148.66 Aligned_cols=84 Identities=30% Similarity=0.398 Sum_probs=76.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||+.++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+.|++..|+|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 040243 569 GKPP 572 (797)
Q Consensus 569 ~~~~ 572 (797)
....
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 6543
No 163
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.50 E-value=4.6e-14 Score=138.88 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=72.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeecc--ceEEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEG--RTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~G--r~L~V~ 566 (797)
....+|||+||++.+++++|+++|++||.|.+|+|+.++ ++|||||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345689999999999999999999999999999987543 57999999999999999999999999965 999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
|++.+.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998654
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=5.6e-14 Score=138.92 Aligned_cols=85 Identities=19% Similarity=0.409 Sum_probs=76.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||++++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|.|+||.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 457999999999999999999999999999999999999999999999999999999999986 7999999999999998
Q ss_pred CCCCCC
Q 040243 570 KPPQPT 575 (797)
Q Consensus 570 ~~~~~~ 575 (797)
.+....
T Consensus 182 ~k~~~~ 187 (196)
T 1l3k_A 182 SKQEMA 187 (196)
T ss_dssp ------
T ss_pred ChhHhc
Confidence 766543
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=5.4e-14 Score=142.80 Aligned_cols=80 Identities=36% Similarity=0.565 Sum_probs=74.9
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecCC
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGK 570 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~~ 570 (797)
.++|||+||++.+++++|+++|++||.|.+|+|++|+ +.+||||||+|.+.++|++||+.|||+.|+|+.|+|+||..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 4589999999999999999999999999999999985 55899999999999999999999999999999999999976
Q ss_pred CC
Q 040243 571 PP 572 (797)
Q Consensus 571 ~~ 572 (797)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=9e-14 Score=133.84 Aligned_cols=80 Identities=39% Similarity=0.729 Sum_probs=76.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeecc--ceEEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEG--RTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~G--r~L~V~ 566 (797)
...++|||+||+..+++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|.+|++.|||..|+| +.|+|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 356799999999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred ec
Q 040243 567 VA 568 (797)
Q Consensus 567 ~A 568 (797)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.4e-14 Score=133.70 Aligned_cols=81 Identities=28% Similarity=0.456 Sum_probs=75.4
Q ss_pred cEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecCCC
Q 040243 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAGKP 571 (797)
Q Consensus 492 ~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~~~ 571 (797)
++|||+||+.++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999997 5889999999999999999999999999999999999998755
Q ss_pred CC
Q 040243 572 PQ 573 (797)
Q Consensus 572 ~~ 573 (797)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.49 E-value=5.1e-14 Score=124.36 Aligned_cols=78 Identities=17% Similarity=0.385 Sum_probs=62.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
....++|||+||++++++++|+++|++||.|.+|+|+++ +||||||+|.+.++|+++.. ....+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEEEE
Confidence 356789999999999999999999999999999999875 78999999999999984321 13345699999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
|..+.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87653
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.9e-14 Score=127.95 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=68.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCC---CcccceEEEEecCHHHHHHHHHhcCceeeccceEEE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVT---GMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~T---GksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V 565 (797)
...++|||+||++++++++|+++|++||.|. +.++.++.+ |++||||||+|.+.++|++||+.|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3567899999999999999999999999999 888888877 7999999999999999999999883 366776666
Q ss_pred EecC
Q 040243 566 RVAG 569 (797)
Q Consensus 566 ~~A~ 569 (797)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5543
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.1e-13 Score=131.38 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=71.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccce-EEEEecCHHHHHHHHHhcCceeecc--ceEEEE
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGY-GFVKYADIQMANNAIASMNGYRLEG--RTIAVR 566 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGf-aFV~F~s~e~A~~AI~~LnG~~l~G--r~L~V~ 566 (797)
..-+|||+||++.+|+++|+++|++||.|.+|+|+.+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4468999999999999999999999999999988764 3688 9999999999999999999999998 899999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
|++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998654
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=6.7e-13 Score=139.49 Aligned_cols=83 Identities=25% Similarity=0.461 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCcHHHHH----HHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccce
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLI----RLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRT 562 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~----~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~ 562 (797)
+....++|||+||++++++++|+ ++|++||.|.+|+|.+ ++++||||||+|.+.++|++||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568899999999999999976 8999999999999876 7889999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 040243 563 IAVRVAGKPP 572 (797)
Q Consensus 563 L~V~~A~~~~ 572 (797)
|+|+|++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997644
No 172
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.4e-14 Score=122.94 Aligned_cols=78 Identities=21% Similarity=0.420 Sum_probs=67.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||++++++++|+++|++||.|.+|+|+++ +||||||+|.+.++|++|+.. ...+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4679999999999999999999999999999999865 789999999999999876432 456789999999998
Q ss_pred CCCCC
Q 040243 570 KPPQP 574 (797)
Q Consensus 570 ~~~~~ 574 (797)
.+...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 66543
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.47 E-value=1.1e-13 Score=132.73 Aligned_cols=79 Identities=39% Similarity=0.727 Sum_probs=75.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccce--EEEEe
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRT--IAVRV 567 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~--L~V~~ 567 (797)
..++|||+||+..+++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..|+|+. |+|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999975 88888
Q ss_pred c
Q 040243 568 A 568 (797)
Q Consensus 568 A 568 (797)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.47 E-value=8.6e-14 Score=141.46 Aligned_cols=78 Identities=24% Similarity=0.390 Sum_probs=72.5
Q ss_pred CCcEEEEecCC-CCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 490 DDTNLYIGYLP-PTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 490 ~~~tLfVgNLp-~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
.+++|||+||+ +.+++++|+++|++||.|.+|+|+++ +||||||+|.+.++|++||+.|||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999876 3799999999999999999999999999999999999
Q ss_pred CCCC
Q 040243 569 GKPP 572 (797)
Q Consensus 569 ~~~~ 572 (797)
+...
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=9e-14 Score=129.95 Aligned_cols=77 Identities=27% Similarity=0.431 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+|| ++++++|+++|++||.|.+|+|. ++||||||+|.+.++|++||+.|+|..|+|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 69999999999999999999985 47799999999999999999999999999999999999
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
.....
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 86644
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.5e-14 Score=128.92 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=69.9
Q ss_pred CCCcEEEE--ecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceee-----ccc
Q 040243 489 LDDTNLYI--GYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRL-----EGR 561 (797)
Q Consensus 489 ~~~~tLfV--gNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l-----~Gr 561 (797)
...++||| |||++++++++|+++|++||.|.+|.|.. .||||||+|.+.++|++|++.|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 77999999999999999999999998754 369999999999999999999999998 689
Q ss_pred eEEEEecCCCC
Q 040243 562 TIAVRVAGKPP 572 (797)
Q Consensus 562 ~L~V~~A~~~~ 572 (797)
.|.|.|++...
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999987544
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.46 E-value=1.3e-13 Score=133.32 Aligned_cols=79 Identities=27% Similarity=0.561 Sum_probs=74.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec---cceEEEE
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE---GRTIAVR 566 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~---Gr~L~V~ 566 (797)
..++|||+||+..+++++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|.+||+.|||..+. ++.|+|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56799999999999999999999999999999999996 6999999999999999999999999998776 4999999
Q ss_pred ecC
Q 040243 567 VAG 569 (797)
Q Consensus 567 ~A~ 569 (797)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=1.2e-13 Score=119.92 Aligned_cols=72 Identities=18% Similarity=0.575 Sum_probs=67.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcC----C-------CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCcee
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTF----G-------DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYR 557 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~f----G-------~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~ 557 (797)
...++|||+||++++++++|+++|++| | .|.++++.++ ||||||+|.+.++|++|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 9999998765 699999999999999999 999999
Q ss_pred eccceEEEEe
Q 040243 558 LEGRTIAVRV 567 (797)
Q Consensus 558 l~Gr~L~V~~ 567 (797)
|+|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=121.50 Aligned_cols=75 Identities=25% Similarity=0.333 Sum_probs=66.9
Q ss_pred CcEEEEecCCCCCcHHH----HHHHhhcC-CCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEE
Q 040243 491 DTNLYIGYLPPTLDDDG----LIRLFSTF-GDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~d----L~~~Fs~f-G~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V 565 (797)
.+.|||+||++.+++++ |+++|++| |.|.+| |+ |||||+|.+.++|++|++.|+|..|.||.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999987 55899999 599998 34 99999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 040243 566 RVAGKPPQPT 575 (797)
Q Consensus 566 ~~A~~~~~~~ 575 (797)
.+|+......
T Consensus 79 ~~A~~~sd~~ 88 (96)
T 2diu_A 79 SFTPKNRELC 88 (96)
T ss_dssp ESSCCSCCCC
T ss_pred EecCCCccee
Confidence 9998776543
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=1.5e-13 Score=133.00 Aligned_cols=83 Identities=24% Similarity=0.450 Sum_probs=75.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCC--cccceEEEEecCHHHHHHHHHhcCceeec---cceEE
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTG--MSKGYGFVKYADIQMANNAIASMNGYRLE---GRTIA 564 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TG--ksrGfaFV~F~s~e~A~~AI~~LnG~~l~---Gr~L~ 564 (797)
+.++|||+||++++++++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999887 99999999999999999999999998776 67788
Q ss_pred EEecCCCC
Q 040243 565 VRVAGKPP 572 (797)
Q Consensus 565 V~~A~~~~ 572 (797)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876443
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.5e-13 Score=127.97 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=68.6
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccce-EEEEecCHHHHHHHHHhcCceeecc--ceEEEEe
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGY-GFVKYADIQMANNAIASMNGYRLEG--RTIAVRV 567 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGf-aFV~F~s~e~A~~AI~~LnG~~l~G--r~L~V~~ 567 (797)
...|||+||++.+++++|+++|++||.|.+|+|+. + .|| |||+|.+.++|++|++.|||..|.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 34678999999999999999999999999999865 3 286 9999999999999999999999988 6899999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
|+.+.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98665
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=9.9e-14 Score=133.63 Aligned_cols=79 Identities=25% Similarity=0.497 Sum_probs=74.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
+.++|||+||++++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|++||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999999999999999999999999999984 678999999999876
Q ss_pred C
Q 040243 570 K 570 (797)
Q Consensus 570 ~ 570 (797)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=3.7e-13 Score=122.92 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=72.9
Q ss_pred CCCcEEEEecCCC-----CCcHHHHHHHhhcCCCEEEEEEEecCCC-CcccceEEEEecCHHHHHHHHHhcCceeeccce
Q 040243 489 LDDTNLYIGYLPP-----TLDDDGLIRLFSTFGDIVMAKVIKDRVT-GMSKGYGFVKYADIQMANNAIASMNGYRLEGRT 562 (797)
Q Consensus 489 ~~~~tLfVgNLp~-----~vte~dL~~~Fs~fG~I~~v~v~~dk~T-GksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~ 562 (797)
...++|+|.||-. .-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||..|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999963 2368999999999999999999998754 689999999999999999999999999999999
Q ss_pred EEEEecCC
Q 040243 563 IAVRVAGK 570 (797)
Q Consensus 563 L~V~~A~~ 570 (797)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.42 E-value=3.1e-13 Score=131.51 Aligned_cols=78 Identities=19% Similarity=0.365 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||+..+++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+||+.|||..|+|+.|+|+||
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356799999999999999999999999988766 458999999999999999999999999999999999999999
Q ss_pred CCC
Q 040243 569 GKP 571 (797)
Q Consensus 569 ~~~ 571 (797)
..+
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=4.5e-13 Score=135.03 Aligned_cols=79 Identities=14% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||++.+++++|+++|++||.|.+|+|.++. ++++||||||+|.+.++|++||+.++ ..|+|+.|+|.|+.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 45899999999999999999999999999999999997 69999999999999999999998664 58999999999976
Q ss_pred C
Q 040243 570 K 570 (797)
Q Consensus 570 ~ 570 (797)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.1e-12 Score=118.47 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=70.5
Q ss_pred CCCCcEEEEecCCCCCc-----------HHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCce
Q 040243 488 ELDDTNLYIGYLPPTLD-----------DDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGY 556 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vt-----------e~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~ 556 (797)
....++|+|.||-...+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++||+.|||+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34578999999954432 5799999999999999965 554 38999999999999999999999999
Q ss_pred eeccceEEEEecCCCCC
Q 040243 557 RLEGRTIAVRVAGKPPQ 573 (797)
Q Consensus 557 ~l~Gr~L~V~~A~~~~~ 573 (797)
.|+|+.|+|.|+.....
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999876543
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=6e-13 Score=140.56 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=76.2
Q ss_pred CCCcEEEEecCCCC-CcHHHHHHHhhcCCCEEEEEEEecCC-CCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 489 LDDTNLYIGYLPPT-LDDDGLIRLFSTFGDIVMAKVIKDRV-TGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 489 ~~~~tLfVgNLp~~-vte~dL~~~Fs~fG~I~~v~v~~dk~-TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
...++|||+||++. +++++|+++|++||.|.+|+|+.+.. ||+++|||||+|.+.++|.+|| .|||..|+|+.|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45679999999999 99999999999999999999999886 6999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 040243 567 VAGKP 571 (797)
Q Consensus 567 ~A~~~ 571 (797)
||..+
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99865
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=5.1e-13 Score=139.15 Aligned_cols=80 Identities=30% Similarity=0.445 Sum_probs=71.1
Q ss_pred CCCCcEEEEecCCCCC---------cHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceee
Q 040243 488 ELDDTNLYIGYLPPTL---------DDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRL 558 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~v---------te~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l 558 (797)
+...++||||||+..+ +|++|+++|++||.|.+|+|+. +||||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 7999999999999999999985 469999999999999999999999999
Q ss_pred ------------ccceEEEEecCCCCC
Q 040243 559 ------------EGRTIAVRVAGKPPQ 573 (797)
Q Consensus 559 ------------~Gr~L~V~~A~~~~~ 573 (797)
.|+.|.|+||+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986554
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=8e-13 Score=135.61 Aligned_cols=79 Identities=25% Similarity=0.473 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCC-CCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 489 LDDTNLYIGYLPP-TLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 489 ~~~~tLfVgNLp~-~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
...++|||+||++ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+.|+|..|.|+.|+|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4678999999999 99999999999999999999999885 78999999999999999999999999999999999
Q ss_pred cCCCC
Q 040243 568 AGKPP 572 (797)
Q Consensus 568 A~~~~ 572 (797)
+....
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 97553
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=2.2e-13 Score=132.57 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=74.6
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 487 KELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 487 ~~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
.....++|||+||++++++++|+++|..||.|.. .++.+..+|++||||||+|.+.++|++||+ |+|..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4467899999999999999999999999998766 345555689999999999999999999994 99999999999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 987653
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=1.3e-12 Score=137.38 Aligned_cols=78 Identities=19% Similarity=0.383 Sum_probs=72.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec-cceEEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE-GRTIAVR 566 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~-Gr~L~V~ 566 (797)
....++|||+||+..+++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++||+.|||+.|+ |+.|+|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3457899999999999999999999999999999999765 589999999999999999999999999 9999999
Q ss_pred ecCC
Q 040243 567 VAGK 570 (797)
Q Consensus 567 ~A~~ 570 (797)
||++
T Consensus 279 ~akk 282 (282)
T 3pgw_A 279 FAKK 282 (282)
T ss_pred EecC
Confidence 9874
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=1.7e-12 Score=136.60 Aligned_cols=83 Identities=30% Similarity=0.460 Sum_probs=78.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
..++|||+||++++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|+|.|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 040243 570 KPP 572 (797)
Q Consensus 570 ~~~ 572 (797)
...
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.35 E-value=1.8e-12 Score=136.44 Aligned_cols=84 Identities=26% Similarity=0.456 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCCCC-cHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEe
Q 040243 489 LDDTNLYIGYLPPTL-DDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRV 567 (797)
Q Consensus 489 ~~~~tLfVgNLp~~v-te~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~ 567 (797)
...++|||+||++.+ ++++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 456799999999995 999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 040243 568 AGKPPQ 573 (797)
Q Consensus 568 A~~~~~ 573 (797)
+..+..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 986553
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.33 E-value=9e-13 Score=131.16 Aligned_cols=78 Identities=26% Similarity=0.485 Sum_probs=73.1
Q ss_pred CCcEEEEecCCC-CCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 490 DDTNLYIGYLPP-TLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 490 ~~~tLfVgNLp~-~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
+.++|||+||++ .+++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+.|+|..|.|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 457999999999 99999999999999999999998875 789999999999999999999999999999999998
Q ss_pred CCCC
Q 040243 569 GKPP 572 (797)
Q Consensus 569 ~~~~ 572 (797)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8654
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=8.6e-13 Score=120.18 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=65.1
Q ss_pred EEecCCCCCcHHHHHHHh------------hcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccce
Q 040243 495 YIGYLPPTLDDDGLIRLF------------STFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRT 562 (797)
Q Consensus 495 fVgNLp~~vte~dL~~~F------------s~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~ 562 (797)
++.||++.+++++|+++| ++||.|.+|+|.+++ ++++||||||+|.+.++|.+|++.|||..|+||.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 367788888888777666 999999999999987 5899999999999999999999999999999999
Q ss_pred EEEEec
Q 040243 563 IAVRVA 568 (797)
Q Consensus 563 L~V~~A 568 (797)
|+|+|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.28 E-value=3.1e-12 Score=129.94 Aligned_cols=77 Identities=12% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCE--EEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccc----eE
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDI--VMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGR----TI 563 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I--~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr----~L 563 (797)
..++|||+||++.+++++|+++|++||.| .+++++.++ ++++|||||+|.+.++|.+||..|||+.|.|+ .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 35789999999999999999999999999 899998875 56779999999999999999999999999987 47
Q ss_pred EEEec
Q 040243 564 AVRVA 568 (797)
Q Consensus 564 ~V~~A 568 (797)
.|+||
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.27 E-value=7.4e-12 Score=131.03 Aligned_cols=81 Identities=27% Similarity=0.351 Sum_probs=73.4
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCce-eec---cceEEEE
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGY-RLE---GRTIAVR 566 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~-~l~---Gr~L~V~ 566 (797)
.++|||+||+..+++++|+++|+.||.|.+|+|+.| .+|+++|||||+|.+.++|.+||+.|++. .+. ++.|.|+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 458999999999999999999999999999999999 49999999999999999999999999554 444 9999999
Q ss_pred ecCCCC
Q 040243 567 VAGKPP 572 (797)
Q Consensus 567 ~A~~~~ 572 (797)
++....
T Consensus 175 ~~~~~~ 180 (261)
T 3sde_A 175 PMEQFD 180 (261)
T ss_dssp ECCCEE
T ss_pred eccccC
Confidence 987643
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.25 E-value=6.1e-12 Score=125.16 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCC-CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec-cceEEEEe
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFG-DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE-GRTIAVRV 567 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG-~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~-Gr~L~V~~ 567 (797)
..++|||+||+..+++++|+++|++|| .|.+|+|+.+ .+|||||+|.+.++|.+|++.|||..|+ |+.|+|.|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 468999999999999999999999999 9999998764 2799999999999999999999999999 99999999
Q ss_pred cCCC
Q 040243 568 AGKP 571 (797)
Q Consensus 568 A~~~ 571 (797)
++.+
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8753
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.25 E-value=7.9e-12 Score=131.98 Aligned_cols=83 Identities=16% Similarity=0.382 Sum_probs=70.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCC-CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFG-DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG-~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
..++|||+||++.+++++|+++|+.|| .|.+|+|+.++. |+++|||||+|.+.++|.+||+.|+|..|+|+.|+|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467999999999999999999999999 999999999974 889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 040243 569 GKPPQ 573 (797)
Q Consensus 569 ~~~~~ 573 (797)
.....
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 75543
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.3e-11 Score=107.85 Aligned_cols=76 Identities=20% Similarity=0.335 Sum_probs=64.0
Q ss_pred CcEEEEecCC-------CCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceE
Q 040243 491 DTNLYIGYLP-------PTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563 (797)
Q Consensus 491 ~~tLfVgNLp-------~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L 563 (797)
.++|.|.-.. ..+++++|+++|++||.|.+|+|+ +++||||||+|.+.++|++||+.+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4466666443 458999999999999999999987 46899999999999999999998555 689999
Q ss_pred EEEecCCCCC
Q 040243 564 AVRVAGKPPQ 573 (797)
Q Consensus 564 ~V~~A~~~~~ 573 (797)
+|+|++.+..
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999986654
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.25 E-value=1.1e-11 Score=113.10 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=69.1
Q ss_pred CcEEEEecCC--CCC--------cHHHHHHHhhcCCCEEEEEEEecCCC--CcccceEEEEecCHHHHHHHHHhcCceee
Q 040243 491 DTNLYIGYLP--PTL--------DDDGLIRLFSTFGDIVMAKVIKDRVT--GMSKGYGFVKYADIQMANNAIASMNGYRL 558 (797)
Q Consensus 491 ~~tLfVgNLp--~~v--------te~dL~~~Fs~fG~I~~v~v~~dk~T--GksrGfaFV~F~s~e~A~~AI~~LnG~~l 558 (797)
.+.|.|.|+= ..+ .+++|+++|++||.|.+|+|.+++.+ ++++||+||+|.+.++|.+|++.|||..|
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5579999983 223 23689999999999999999999865 47899999999999999999999999999
Q ss_pred ccceEEEEecC
Q 040243 559 EGRTIAVRVAG 569 (797)
Q Consensus 559 ~Gr~L~V~~A~ 569 (797)
+||.|+|.++.
T Consensus 85 ~GR~i~v~~~~ 95 (105)
T 3v4m_A 85 ANRVVVTKYCD 95 (105)
T ss_dssp TTEECEEEEEC
T ss_pred CCCEEEEEEeC
Confidence 99999999874
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=1.5e-11 Score=114.70 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCcEEEEecCCCC-----CcHHHHHHHhhcCCCEEEEEEEecCC----CCcccceEEEEecCHHHHHHHHHhcCceeecc
Q 040243 490 DDTNLYIGYLPPT-----LDDDGLIRLFSTFGDIVMAKVIKDRV----TGMSKGYGFVKYADIQMANNAIASMNGYRLEG 560 (797)
Q Consensus 490 ~~~tLfVgNLp~~-----vte~dL~~~Fs~fG~I~~v~v~~dk~----TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~G 560 (797)
..++|+|.|+-.. -.++||++.|++||.|.+|+|.+++. +++++||+||+|.+.++|.+|++.|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4678999998421 23689999999999999999999875 46889999999999999999999999999999
Q ss_pred ceEEEEecC
Q 040243 561 RTIAVRVAG 569 (797)
Q Consensus 561 r~L~V~~A~ 569 (797)
|.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.24 E-value=1.4e-11 Score=126.26 Aligned_cols=77 Identities=17% Similarity=0.342 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCC-CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec-cceEEEEe
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFG-DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE-GRTIAVRV 567 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG-~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~-Gr~L~V~~ 567 (797)
..++|||+||+..+++++|+++|++|| .|.+|+|+.+ .+|||||+|.+.++|.+||+.|+|..|+ |+.|+|+|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999998663 3699999999999999999999999999 99999999
Q ss_pred cCCC
Q 040243 568 AGKP 571 (797)
Q Consensus 568 A~~~ 571 (797)
++.+
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9753
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=1.5e-11 Score=128.74 Aligned_cols=76 Identities=26% Similarity=0.585 Sum_probs=71.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEec
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVA 568 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A 568 (797)
...++|||+||++++|+++|+++|++||.|.+|+|.++ +|||||+|.+.++|.+||+.|+|..|.|+.|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45689999999999999999999999999999998654 699999999999999999999999999999999998
Q ss_pred CC
Q 040243 569 GK 570 (797)
Q Consensus 569 ~~ 570 (797)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.21 E-value=2.5e-11 Score=117.27 Aligned_cols=75 Identities=16% Similarity=0.526 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcC----C-------CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceee
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTF----G-------DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRL 558 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~f----G-------~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l 558 (797)
+.++|||+||+.++++++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .|+|..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 77777764 35799999999999999999 8999999
Q ss_pred ccceEEEEecCCC
Q 040243 559 EGRTIAVRVAGKP 571 (797)
Q Consensus 559 ~Gr~L~V~~A~~~ 571 (797)
+|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987644
No 206
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.20 E-value=3.7e-11 Score=118.76 Aligned_cols=76 Identities=16% Similarity=0.517 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcC----C-------CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceee
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTF----G-------DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRL 558 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~f----G-------~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l 558 (797)
..++|||+||++++++++|+++|++| | .|.++++ ++++|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 5 5666654 456899999999999999999 8999999
Q ss_pred ccceEEEEecCCCC
Q 040243 559 EGRTIAVRVAGKPP 572 (797)
Q Consensus 559 ~Gr~L~V~~A~~~~ 572 (797)
+|+.|+|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987543
No 207
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.11 E-value=1e-10 Score=127.84 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=65.6
Q ss_pred CCCCcEEEEec--CCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec---cc-
Q 040243 488 ELDDTNLYIGY--LPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE---GR- 561 (797)
Q Consensus 488 ~~~~~tLfVgN--Lp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~---Gr- 561 (797)
+....+||||| |++.++|++|+++|++||+|.+|.+.. +||||||+|.+.++|++||+.|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34567999999 578999999999999999999987643 5799999999999999999999999874 44
Q ss_pred -eEEEEecC
Q 040243 562 -TIAVRVAG 569 (797)
Q Consensus 562 -~L~V~~A~ 569 (797)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57888875
No 208
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=102.23 Aligned_cols=72 Identities=26% Similarity=0.439 Sum_probs=61.4
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
....+|.||. ++||+|||++|+|+|+|+++|||+|.|...|+. ....+-+|.|+| +.+
T Consensus 13 ~~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---------------~~~~er~v~I~G-~~~ 70 (85)
T 2opv_A 13 GTVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---------------NTNVDKPLRIIG-DPY 70 (85)
T ss_dssp SEEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---------------STTSCEEEEEEE-CHH
T ss_pred CEEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---------------CCCCceEEEEEe-CHH
Confidence 4567889998 899999999999999999999999999976631 112344899999 999
Q ss_pred HHHHHHHHHHHhcC
Q 040243 330 SLEGAAAMVEKLLQ 343 (797)
Q Consensus 330 ~v~~A~~~I~~ll~ 343 (797)
++++|+++|+.|+.
T Consensus 71 ~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 71 KVQQACEMVMDILR 84 (85)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999875
No 209
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.05 E-value=2.9e-10 Score=97.47 Aligned_cols=73 Identities=25% Similarity=0.410 Sum_probs=61.0
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
+.+.+|.||. ++||+|||++|+|+|+|+++|||+|.|...+....+ ..+-.|.|+|. .+
T Consensus 2 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~--------------~~~~~v~I~G~-~~ 60 (76)
T 1dtj_A 2 KELVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG--------------TRNRRVTITGS-PA 60 (76)
T ss_dssp CEEEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTT--------------CCEEEEEEEES-HH
T ss_pred ceEEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCC--------------CceeEEEEEeC-HH
Confidence 5678899998 899999999999999999999999999865421111 12348999997 89
Q ss_pred HHHHHHHHHHHhcC
Q 040243 330 SLEGAAAMVEKLLQ 343 (797)
Q Consensus 330 ~v~~A~~~I~~ll~ 343 (797)
.+++|.++|+.+|.
T Consensus 61 ~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 61 ATQAAQYLISQRVT 74 (76)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 210
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.04 E-value=1.5e-10 Score=103.77 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=65.9
Q ss_pred CCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEe
Q 040243 246 YRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEA 325 (797)
Q Consensus 246 y~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a 325 (797)
+.|-..+.+|.||. ++||+|||.+|+|+|+|+++|||+|.|...+... ...+-.|.|++
T Consensus 10 ~~p~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---------------~~~~r~v~I~G 68 (94)
T 1x4m_A 10 DGPGNAVQEIMIPA------SKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---------------TGADKPLRITG 68 (94)
T ss_dssp CCCCCEEEEEEECH------HHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---------------SCSCEEEEEEE
T ss_pred CCCCcEEEEEEECh------hhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---------------CCCceEEEEEe
Confidence 34677899999998 8999999999999999999999999998665211 12345899999
Q ss_pred cCHHHHHHHHHHHHHhcCCC
Q 040243 326 ETQESLEGAAAMVEKLLQPV 345 (797)
Q Consensus 326 ~~~e~v~~A~~~I~~ll~~~ 345 (797)
+.+++++|+++|+.+|...
T Consensus 69 -~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 69 -DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp -CTTTHHHHHHHHHHHHCCC
T ss_pred -CHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999764
No 211
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.98 E-value=4.1e-10 Score=104.39 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=64.7
Q ss_pred CCcEEEEecCCCCC----------cHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeec
Q 040243 490 DDTNLYIGYLPPTL----------DDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLE 559 (797)
Q Consensus 490 ~~~tLfVgNLp~~v----------te~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~ 559 (797)
..+.|.+.|+=.-- .++||++.|++||.|.+|+|.++. .+||+||+|.+.++|.+|++.|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34578888874321 135789999999999999986653 5899999999999999999999999999
Q ss_pred cceEEEEecCC
Q 040243 560 GRTIAVRVAGK 570 (797)
Q Consensus 560 Gr~L~V~~A~~ 570 (797)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999753
No 212
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.96 E-value=6.9e-10 Score=101.77 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=60.5
Q ss_pred eEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHH
Q 040243 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQES 330 (797)
Q Consensus 251 ~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~ 330 (797)
.+.+|.||. ++||+|||.+|+|||+|+++|||+|.|....... ....+-.|.|++ +.++
T Consensus 7 ~~~~i~IP~------~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~--------------~~~~~r~V~I~G-~~e~ 65 (107)
T 2hh2_A 7 GEMTFSIPT------HKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN--------------GDPNFKLFIIRG-SPQQ 65 (107)
T ss_dssp CCEEEEEEG------GGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTT--------------CCTTEEEEEEES-CHHH
T ss_pred CeEEEEECH------HHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCC--------------CCCCceEEEEEC-CHHH
Confidence 367889998 8999999999999999999999999998643100 011234789999 8999
Q ss_pred HHHHHHHHHHhcCCC
Q 040243 331 LEGAAAMVEKLLQPV 345 (797)
Q Consensus 331 v~~A~~~I~~ll~~~ 345 (797)
|++|+++|+.+|...
T Consensus 66 v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 66 IDHAKQLIEEKIEGP 80 (107)
T ss_dssp HHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998753
No 213
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.94 E-value=7.9e-10 Score=94.95 Aligned_cols=73 Identities=26% Similarity=0.387 Sum_probs=61.2
Q ss_pred CCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecC
Q 040243 248 PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAET 327 (797)
Q Consensus 248 p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~ 327 (797)
+..++.+|.||. ++||+|||.+|+|+|+|+++|||+|.|.... . ...+-.|.|+|.
T Consensus 2 ~~~~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~---~--------------~~~~~~v~I~G~- 57 (76)
T 2p2r_A 2 AQTTSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANPV---E--------------GSTDRQVTITGS- 57 (76)
T ss_dssp -CCEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCCC---T--------------TCSEEEEEEEEC-
T ss_pred CCceEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCCC---C--------------CCCeEEEEEEeC-
Confidence 456788999998 8999999999999999999999999998521 1 112338999997
Q ss_pred HHHHHHHHHHHHHhcCC
Q 040243 328 QESLEGAAAMVEKLLQP 344 (797)
Q Consensus 328 ~e~v~~A~~~I~~ll~~ 344 (797)
.+.+++|.++|+.+|..
T Consensus 58 ~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 58 AASISLAQYLINVRLSS 74 (76)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999864
No 214
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.93 E-value=6.1e-10 Score=98.21 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=61.2
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
+.+.+|.||. ++||+|||.+|+|+|+|+++|||+|.|...+....| ..+-.|.|+|. .+
T Consensus 2 k~t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g--------------~~~r~v~I~G~-~~ 60 (87)
T 1ec6_A 2 KELVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG--------------TRNRRVTITGS-PA 60 (87)
T ss_dssp CSEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT--------------SCEEEEEEESS-HH
T ss_pred ceEEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC--------------CCceEEEEEcC-HH
Confidence 5678899998 899999999999999999999999999865421111 12238999997 89
Q ss_pred HHHHHHHHHHHhcCC
Q 040243 330 SLEGAAAMVEKLLQP 344 (797)
Q Consensus 330 ~v~~A~~~I~~ll~~ 344 (797)
.+++|..+|+.+|..
T Consensus 61 ~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 61 ATQAAQYLISQRVTY 75 (87)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999864
No 215
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.93 E-value=1.2e-09 Score=99.60 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCc
Q 040243 240 FKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDL 319 (797)
Q Consensus 240 ~~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~L 319 (797)
+...++|.| ++.+|.||. ++||+|||++|+|+|+|+++|||+|.|...... ...++-
T Consensus 6 ~~~~s~~ap--~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---------------~~~~~~ 62 (104)
T 1we8_A 6 SGILTENTP--VFEQLSVPQ------RSVGRIIGRGGETIRSICKASGAKITCDKESEG---------------TLLLSR 62 (104)
T ss_dssp CCCCSSSCE--EEEEEEEET------TTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC---------------SSSSEE
T ss_pred ccccCCCCC--EEEEEEECh------hheeeeECCCCHHHHHHHHHHCCEEEEecCCCC---------------CCCCcc
Confidence 345566666 455677998 899999999999999999999999999864310 012334
Q ss_pred eEEEEecCHHHHHHHHHHHHHhcCC
Q 040243 320 HVLVEAETQESLEGAAAMVEKLLQP 344 (797)
Q Consensus 320 Hv~I~a~~~e~v~~A~~~I~~ll~~ 344 (797)
.|.|+|... .+++|+++|+.+|..
T Consensus 63 ~V~I~G~~~-~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 63 LIKISGTQK-EVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEHH-HHHHHHHHHHHHHHH
T ss_pred eEEEEcCHH-HHHHHHHHHHHHHhh
Confidence 899999766 799999999999864
No 216
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=5.6e-10 Score=102.25 Aligned_cols=70 Identities=20% Similarity=0.413 Sum_probs=58.8
Q ss_pred EEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHH
Q 040243 252 QKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESL 331 (797)
Q Consensus 252 ~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v 331 (797)
+.+|.||. ++||+|||++|+|||+|+++|||+|.|.... ....+-+|.|++. .|++
T Consensus 12 ~~~i~Ip~------~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-----------------~~~~er~V~I~G~-~e~v 67 (106)
T 2hh3_A 12 GIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-----------------GTGPEKIAHIMGP-PDRC 67 (106)
T ss_dssp CEEEEEET------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-----------------SSSSEEEEEEESS-HHHH
T ss_pred EEEEEECH------HHcCccCCCCcHHHHHHHHHHCcEEEEecCC-----------------CCCceeEEEEEeC-HHHH
Confidence 56788998 8999999999999999999999999998432 0122348999987 8999
Q ss_pred HHHHHHHHHhcCCC
Q 040243 332 EGAAAMVEKLLQPV 345 (797)
Q Consensus 332 ~~A~~~I~~ll~~~ 345 (797)
++|+++|+.+|...
T Consensus 68 ~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 68 EHAARIINDLLQSL 81 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998643
No 217
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.91 E-value=2e-09 Score=93.83 Aligned_cols=72 Identities=29% Similarity=0.511 Sum_probs=60.0
Q ss_pred CceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCH
Q 040243 249 PKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQ 328 (797)
Q Consensus 249 ~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~ 328 (797)
..++.+|.||. +++|+|||++|+|+|+|+++|||+|.|...- .+ ..+-.|.|++ +.
T Consensus 5 ~~~~~~i~Vp~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~---~~--------------~~~~~v~I~G-~~ 60 (82)
T 1zzk_A 5 PIITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPL---EG--------------SEDRIITITG-TQ 60 (82)
T ss_dssp CCEEEEEEEET------TTGGGGTCGGGHHHHHHHHHHCCEEEECCTT---SC--------------SSEEEEEEEE-CH
T ss_pred CeEEEEEEECh------HhcCeeECCCchHHHHHHHHHCCEEEEcCCC---CC--------------CCceEEEEEe-CH
Confidence 35788999998 8999999999999999999999999997421 01 1223799999 59
Q ss_pred HHHHHHHHHHHHhcCC
Q 040243 329 ESLEGAAAMVEKLLQP 344 (797)
Q Consensus 329 e~v~~A~~~I~~ll~~ 344 (797)
+.+++|.++|+.+|..
T Consensus 61 ~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 61 DQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 218
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.90 E-value=1.1e-09 Score=97.66 Aligned_cols=72 Identities=22% Similarity=0.495 Sum_probs=61.1
Q ss_pred CceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCH
Q 040243 249 PKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQ 328 (797)
Q Consensus 249 ~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~ 328 (797)
..++.+|.||. ++||+|||++|+|+|+|+++|||+|.|..... + ..+-.|.|++. .
T Consensus 13 ~~~~~~i~Ip~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~---g--------------~~~r~v~I~G~-~ 68 (92)
T 1x4n_A 13 SVMTEEYKVPD------GMVGFIIGRGGEQISRIQQESGCKIQIAPDSG---G--------------LPERSCMLTGT-P 68 (92)
T ss_dssp CCEEEEEEEEH------HHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT---T--------------CSEEEEEEEEC-H
T ss_pred CCEEEEEEECh------HHcceeECCCchHHHHHHHHhCCEEEEcCCCC---C--------------CCccEEEEEeC-H
Confidence 45788999998 89999999999999999999999999986431 1 12237999997 8
Q ss_pred HHHHHHHHHHHHhcCC
Q 040243 329 ESLEGAAAMVEKLLQP 344 (797)
Q Consensus 329 e~v~~A~~~I~~ll~~ 344 (797)
+.|++|+++|+.+|..
T Consensus 69 e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 69 ESVQSAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 219
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.89 E-value=1.6e-09 Score=94.43 Aligned_cols=71 Identities=28% Similarity=0.436 Sum_probs=59.6
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
.++.+|.||. ++||+|||++|+|+|+|+++|||+|.|.... ++ ..+-.|.|+|.. +
T Consensus 5 ~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~---~~--------------~~~r~v~I~G~~-~ 60 (82)
T 1wvn_A 5 QTTHELTIPN------NLIGCIIGRQGANINEIRQMSGAQIKIANPV---EG--------------SSGRQVTITGSA-A 60 (82)
T ss_dssp CEEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHCCEEEECCCC---TT--------------CSEEEEEEEECH-H
T ss_pred cEEEEEEEch------HhccceeCCCchhHHHHHHHhCCEEEEecCC---CC--------------CCceEEEEEcCH-H
Confidence 5678999998 8999999999999999999999999998531 11 123389999965 9
Q ss_pred HHHHHHHHHHHhcCC
Q 040243 330 SLEGAAAMVEKLLQP 344 (797)
Q Consensus 330 ~v~~A~~~I~~ll~~ 344 (797)
.+++|+++|+.+|..
T Consensus 61 ~v~~A~~~I~~~i~~ 75 (82)
T 1wvn_A 61 SISLAQYLINARLSS 75 (82)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 220
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.88 E-value=2e-09 Score=125.89 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-CCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEecc
Q 040243 217 RARERLNKERQEIISQIIKRNPAF-KPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGK 295 (797)
Q Consensus 217 r~~~~le~er~~li~~~~~~~p~~-~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGk 295 (797)
.+.++-.+.+.+|++.|.+.+... ...+.|.|+..+.| ||. ++||.||||+|+|+|.|+++|||+|.|...
T Consensus 534 ~aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~--I~~------~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~ 605 (630)
T 3u1k_A 534 EAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQ--VPL------SKRAKFVGPGGYNLKKLQAETGVTISQVDE 605 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEE--CCH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEE--eCh------hHhheeECCCChhHHHHHHHHCCEEEEcCC
Confidence 456667778999999999999988 45789999988877 998 999999999999999999999999999876
Q ss_pred ccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcC
Q 040243 296 GSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQ 343 (797)
Q Consensus 296 GS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~ 343 (797)
| .|.|+|.+.+++++|+++|+.|+.
T Consensus 606 G-----------------------~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 606 E-----------------------TFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp S-----------------------EEEEEESSHHHHHHHHHHTTC---
T ss_pred c-----------------------EEEEEeCCHHHHHHHHHHHHHHhC
Confidence 6 899999999999999999998863
No 221
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=7.5e-09 Score=91.80 Aligned_cols=74 Identities=23% Similarity=0.509 Sum_probs=63.4
Q ss_pred CcEEEEecCCC----C-CcH---HHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccce
Q 040243 491 DTNLYIGYLPP----T-LDD---DGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRT 562 (797)
Q Consensus 491 ~~tLfVgNLp~----~-vte---~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~ 562 (797)
..||+|.-++. + .++ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||+ |||..++||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 45899988762 2 332 5789999999999999999874 8999999999999998 9999999999
Q ss_pred EEEEecCCCCC
Q 040243 563 IAVRVAGKPPQ 573 (797)
Q Consensus 563 L~V~~A~~~~~ 573 (797)
|+|+++++...
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999987654
No 222
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.84 E-value=2.6e-09 Score=91.17 Aligned_cols=70 Identities=26% Similarity=0.370 Sum_probs=60.3
Q ss_pred CceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCH
Q 040243 249 PKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQ 328 (797)
Q Consensus 249 ~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~ 328 (797)
..+..+|.||. +++|.|||++|+|+|+|+++|||+|.|...|+ .+-.|.|+|. .
T Consensus 3 ~~~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~-------------------~er~v~I~G~-~ 56 (73)
T 2axy_A 3 VTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC-------------------PERIITLAGP-T 56 (73)
T ss_dssp CCEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC-------------------SEEEEEEEEC-H
T ss_pred ceEEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC-------------------CcEEEEEEeC-H
Confidence 45778999998 99999999999999999999999999986541 1126899998 9
Q ss_pred HHHHHHHHHHHHhcCC
Q 040243 329 ESLEGAAAMVEKLLQP 344 (797)
Q Consensus 329 e~v~~A~~~I~~ll~~ 344 (797)
+.+.+|+++|..+|..
T Consensus 57 ~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 57 NAIFKAFAMIIDKLEE 72 (73)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998753
No 223
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.82 E-value=4.7e-09 Score=89.15 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=58.0
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
..+..|.||. .++|+|||++|+|+|+|+++|||+|.|-..|. ++ =.|.|+|. .+
T Consensus 4 ~~~~~i~I~~------~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~------------------~~-~~V~I~G~-~~ 57 (71)
T 1vig_A 4 MDYVEINIDH------KFHRHLIGKSGANINRIKDQYKVSVRIPPDSE------------------KS-NLIRIEGD-PQ 57 (71)
T ss_dssp CEEEEEEECS------SHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS------------------SS-EEEEEEES-SH
T ss_pred eEEEEEEECH------HHhhhhcCCCCccHHHHHHHHCCEEEECCCCC------------------cc-cEEEEEcC-HH
Confidence 4567888998 89999999999999999999999999986652 00 17999998 58
Q ss_pred HHHHHHHHHHHhcC
Q 040243 330 SLEGAAAMVEKLLQ 343 (797)
Q Consensus 330 ~v~~A~~~I~~ll~ 343 (797)
++++|.++|+.|+.
T Consensus 58 ~v~~A~~~I~~i~~ 71 (71)
T 1vig_A 58 GVQQAKRELLELAS 71 (71)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999863
No 224
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.81 E-value=3.4e-09 Score=93.90 Aligned_cols=72 Identities=26% Similarity=0.464 Sum_probs=60.3
Q ss_pred CceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCH
Q 040243 249 PKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQ 328 (797)
Q Consensus 249 ~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~ 328 (797)
..++.+|.||. ++||+|||.+|+|+|+|+++|||+|.|...- . ...+-.|.|++. .
T Consensus 12 ~~~~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~---~--------------~~~~~~v~I~G~-~ 67 (89)
T 1j5k_A 12 PIITTQVTIPK------DLAGSIIGKGGQRIKQIRHESGASIKIDEPL---E--------------GSEDRIITITGT-Q 67 (89)
T ss_dssp CEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHTCCEEEECSCC---S--------------SSSEEEEEEEEE-H
T ss_pred CeEEEEEEECh------hhcceeECCCCHhHHHHHHHhCCeEEecCCC---C--------------CCCccEEEEEcC-H
Confidence 46788999998 8999999999999999999999999997421 0 012237999997 8
Q ss_pred HHHHHHHHHHHHhcCC
Q 040243 329 ESLEGAAAMVEKLLQP 344 (797)
Q Consensus 329 e~v~~A~~~I~~ll~~ 344 (797)
+.+++|+++|+.+|..
T Consensus 68 e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 68 DQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999854
No 225
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.80 E-value=9.7e-09 Score=100.21 Aligned_cols=101 Identities=24% Similarity=0.369 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEecccccc
Q 040243 220 ERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVK 299 (797)
Q Consensus 220 ~~le~er~~li~~~~~~~p~~~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k 299 (797)
+.+++.+..|++.|.+.. .+.+ . ....++.+|.||. +++|+|||.+|+|+|+|+++|||+|.|...+.
T Consensus 58 e~v~~A~~~I~~~~~e~~-~~~~-~--~~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~-- 125 (163)
T 3krm_A 58 EAQFKAQGRIYGKLKEEN-FFGP-K--EEVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT-- 125 (163)
T ss_dssp HHHHHHHHHHHHHHHHTT-SSCS-S--CCCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC--
T ss_pred HHHHHHHHHHHHHHhccc-cccc-c--cCCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCC--
Confidence 566777777877776652 1211 1 1235667899998 99999999999999999999999999986552
Q ss_pred ccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcCCCh
Q 040243 300 EGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVD 346 (797)
Q Consensus 300 ~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~~~~ 346 (797)
++.++.-.|.|+| +.++|++|.++|+.+|..+.
T Consensus 126 -------------~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 126 -------------PDENDQVIVKIIG-HFYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp -------------CCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHT
T ss_pred -------------CCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHH
Confidence 1234445799999 78999999999999997543
No 226
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.79 E-value=3.9e-09 Score=96.31 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=61.3
Q ss_pred CCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEE
Q 040243 243 PADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVL 322 (797)
Q Consensus 243 p~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~ 322 (797)
...|.| +...|.||. ++||+|||++|+|+|+|+++|||+|.|-..|+. .=.|.
T Consensus 11 i~~~ap--~~~~i~Ip~------~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~-------------------~~~V~ 63 (104)
T 2ctk_A 11 LEALVP--VTIEVEVPF------DLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ-------------------SDIIA 63 (104)
T ss_dssp CCCSSC--EEEEEECCH------HHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT-------------------CCEEE
T ss_pred HHhhCC--EEEEEEECh------HHccceeCCCchHHHHHHHHHCCEEEecCCCCC-------------------cceEE
Confidence 445666 455666998 999999999999999999999999999866520 01899
Q ss_pred EEecCHHHHHHHHHHHHHhcCC
Q 040243 323 VEAETQESLEGAAAMVEKLLQP 344 (797)
Q Consensus 323 I~a~~~e~v~~A~~~I~~ll~~ 344 (797)
|+|.. +++++|+++|+.++..
T Consensus 64 I~G~~-e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 64 ITGLA-ANLDRAKAGLLERVKE 84 (104)
T ss_dssp EEECH-HHHHHHHHHHHHHHHH
T ss_pred EEcCH-HHHHHHHHHHHHHHhh
Confidence 99985 8999999999999864
No 227
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.79 E-value=3.3e-09 Score=94.96 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=59.2
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
.++.+|.||. +++|.|||++|+|+|+|+++|||+|.|-..++ ++-.|.|+|. .+
T Consensus 16 ~~t~~i~Ip~------~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~-------------------~~~~V~I~G~-~e 69 (94)
T 2cte_A 16 QASATVAIPK------EHHRFVIGKNGEKLQDLELKTATKIQIPRPDD-------------------PSNQIKITGT-KE 69 (94)
T ss_dssp CEEEEEECCT------TTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS-------------------SCCEEEEEEC-HH
T ss_pred ceEEEEEECh------HHeeeeECCCChhHHHHHHHHCCEEEeCCCCC-------------------CCCeEEEEEC-HH
Confidence 4678899998 89999999999999999999999999974321 1128999998 99
Q ss_pred HHHHHHHHHHHhcCC
Q 040243 330 SLEGAAAMVEKLLQP 344 (797)
Q Consensus 330 ~v~~A~~~I~~ll~~ 344 (797)
.+++|.++|+.++..
T Consensus 70 ~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 70 GIEKARHEVLLISAE 84 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999753
No 228
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=3.1e-09 Score=93.13 Aligned_cols=69 Identities=26% Similarity=0.471 Sum_probs=57.1
Q ss_pred CCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecC
Q 040243 248 PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAET 327 (797)
Q Consensus 248 p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~ 327 (797)
+...+.+|.||. +++|+|||++|+|+|+||++|||+|.|-.++ +|. .|.|+++.
T Consensus 7 ~~~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~-------------------~~~-~v~ItG~~ 60 (83)
T 2dgr_A 7 GGQTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD-------------------KEP-VFAVTGMP 60 (83)
T ss_dssp CCSEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS-------------------SCC-EEEEEECT
T ss_pred CCceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC-------------------CCC-eEEEEcCH
Confidence 345778889997 9999999999999999999999999997432 111 57788875
Q ss_pred HHHHHHHHHHHHHhcC
Q 040243 328 QESLEGAAAMVEKLLQ 343 (797)
Q Consensus 328 ~e~v~~A~~~I~~ll~ 343 (797)
+++++|.++|+.++.
T Consensus 61 -e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 61 -ENVDRAREEIEAHIT 75 (83)
T ss_dssp -TTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHh
Confidence 899999999998753
No 229
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.77 E-value=4.8e-09 Score=94.52 Aligned_cols=72 Identities=13% Similarity=0.221 Sum_probs=60.2
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
.++.+|.||. .+||+|||++|+|+|+|+++|||+|.|-..|... ...-.|.|+|. .+
T Consensus 16 ~~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~----------------~~~~~V~I~G~-~e 72 (97)
T 2ctl_A 16 SFKLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN----------------QPQDQITITGY-EK 72 (97)
T ss_dssp TCEEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS----------------SCSSEEEEESC-HH
T ss_pred ceeEEEEECH------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC----------------CCccEEEEEeC-HH
Confidence 4677888998 8999999999999999999999999998665211 01227999997 89
Q ss_pred HHHHHHHHHHHhcCC
Q 040243 330 SLEGAAAMVEKLLQP 344 (797)
Q Consensus 330 ~v~~A~~~I~~ll~~ 344 (797)
.+++|.++|+.|+..
T Consensus 73 ~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 73 NTEAARDAILRIVGE 87 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999754
No 230
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.8e-08 Score=94.25 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=67.8
Q ss_pred CCCCcEEEEecCCCC-CcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecC-HHHHHHHHHhcC--ceeeccceE
Q 040243 488 ELDDTNLYIGYLPPT-LDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYAD-IQMANNAIASMN--GYRLEGRTI 563 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~-vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s-~e~A~~AI~~Ln--G~~l~Gr~L 563 (797)
-..++-|||+||++. +++++|+++|++||.|..|.++++.. .|||.|.+ ..+|..|++.|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 356889999999999 99999999999999999999998874 59999999 899999999995 788999998
Q ss_pred EEEec
Q 040243 564 AVRVA 568 (797)
Q Consensus 564 ~V~~A 568 (797)
+|++.
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 231
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.70 E-value=7.9e-09 Score=91.82 Aligned_cols=66 Identities=17% Similarity=0.368 Sum_probs=58.4
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcE-EEEecc-ccccccccccccCCCCCCCCCCCceEEEEecC
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAK-IVIRGK-GSVKEGRLQQKRDLKPDPSENEDLHVLVEAET 327 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgak-I~IrGk-GS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~ 327 (797)
.+...|.||. ++||.||||+|+|+|+|+++|||+ |.|... | .|.|+|.+
T Consensus 14 ~~i~~i~I~~------dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG-----------------------~V~I~g~~ 64 (91)
T 2cpq_A 14 AFHEEFVVRE------DLMGLAIGTHGSNIQQARKVPGVTAIELDEDTG-----------------------TFRIYGES 64 (91)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTHHHHHHHTSTTEEEEEEETTTT-----------------------EEEEEESS
T ss_pred ceEEEEEECh------HHhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCC-----------------------EEEEEECC
Confidence 3566777998 999999999999999999999998 999742 3 89999999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 040243 328 QESLEGAAAMVEKLLQP 344 (797)
Q Consensus 328 ~e~v~~A~~~I~~ll~~ 344 (797)
.+++++|.++|+.+-..
T Consensus 65 ~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 65 ADAVKKARGFLEFVEDF 81 (91)
T ss_dssp HHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHhhheE
Confidence 99999999999987654
No 232
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.70 E-value=1.2e-08 Score=91.58 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=59.4
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
.++..|.||. .++|+|||++|+|+|+|+++|||+|.|-.+|+.. .-.|.|+|. .+
T Consensus 16 ~vt~~i~Ip~------~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~------------------~~~V~I~G~-~e 70 (95)
T 2ctm_A 16 MVSEDVPLDH------RVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD------------------PNCVTVTGL-PE 70 (95)
T ss_dssp CCCEEEECCT------TTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSC------------------TTEEEEESC-HH
T ss_pred cEEEEEEECH------HHccccCCCCcchHHHHHHHHCCeEEecCCCCCC------------------CcEEEEEcC-HH
Confidence 4567888998 8999999999999999999999999998766311 127999998 69
Q ss_pred HHHHHHHHHHHhcCC
Q 040243 330 SLEGAAAMVEKLLQP 344 (797)
Q Consensus 330 ~v~~A~~~I~~ll~~ 344 (797)
++++|+++|+.|+..
T Consensus 71 ~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 71 NVEEAIDHILNLEEE 85 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 233
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=99.64 Aligned_cols=102 Identities=17% Similarity=0.356 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCCCCCCCCCC-ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEecccc
Q 040243 220 ERLNKERQEIISQIIKRNP-AFKPPADYRPP-KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGS 297 (797)
Q Consensus 220 ~~le~er~~li~~~~~~~p-~~~pp~dy~p~-~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS 297 (797)
+.+++.+..|.+.+.+... .|.+..+|.+. ..+.+|.||. +++|+|||.+|+|+|+|+++|||+|.|.....
T Consensus 58 ~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~ 131 (164)
T 2jvz_A 58 YKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG 131 (164)
T ss_dssp HHHHHHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC
Confidence 5666667666666554332 34444566543 2456778997 89999999999999999999999999985431
Q ss_pred ccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcCCC
Q 040243 298 VKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPV 345 (797)
Q Consensus 298 ~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~~~ 345 (797)
...+-.|.|+|. .+.+++|..+|+.+|..+
T Consensus 132 -----------------~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 132 -----------------TGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp -----------------TSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 112237999997 899999999999998653
No 234
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.69 E-value=8.9e-09 Score=121.69 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-CCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEecc
Q 040243 217 RARERLNKERQEIISQIIKRNPAF-KPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGK 295 (797)
Q Consensus 217 r~~~~le~er~~li~~~~~~~p~~-~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGk 295 (797)
.+.++..+.+.+|++.|.+.+... ...+.|+|+..+.| |+. ++||.||||+|+|||.|+++||++|.|...
T Consensus 537 ~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~--i~~------~ki~~vig~gg~~i~~i~~~tg~~idi~dd 608 (726)
T 4aid_A 537 QALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETIN--IPT------DKIREVIGSGGKVIREIVATTGAKVDINDD 608 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEe--CCH------HHHHhhcCCCchhHHHHHHHHCCceeEECC
Confidence 466667778999999999999887 45789999988877 888 899999999999999999999999999977
Q ss_pred ccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcCCChHH
Q 040243 296 GSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVDEV 348 (797)
Q Consensus 296 GS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~~~~e~ 348 (797)
| .|.|.+.+.+++++|+++|+.|+.....|
T Consensus 609 G-----------------------~v~I~~~~~~~~~~A~~~i~~i~~~~~vG 638 (726)
T 4aid_A 609 G-----------------------VVKVSASDGAKIKAAIDWIKSITDEAEVG 638 (726)
T ss_dssp ----------------------------CCSCHHHHHHHHHC-----------
T ss_pred c-----------------------eEEEEeCCHHHHHHHHHHHHHHhhhhcCC
Confidence 6 78899999999999999999999765544
No 235
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.68 E-value=2.8e-08 Score=101.23 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=60.8
Q ss_pred CcHHHHHHHhhcCCCEEEEEEEecC----CCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEEecC
Q 040243 503 LDDDGLIRLFSTFGDIVMAKVIKDR----VTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVRVAG 569 (797)
Q Consensus 503 vte~dL~~~Fs~fG~I~~v~v~~dk----~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~~A~ 569 (797)
-.+++|++.|++||.|.+++|.++. .+++++||+||+|.+.++|.+||+.|||..++||.|+|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999999999999998554 455999999999999999999999999999999999999864
No 236
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.59 E-value=9.3e-08 Score=92.95 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCC-CCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccc
Q 040243 220 ERLNKERQEIISQIIKRNPAFKPPAD-YRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV 298 (797)
Q Consensus 220 ~~le~er~~li~~~~~~~p~~~pp~d-y~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~ 298 (797)
+.+++.+..|++.|.+......+... ..-...+.+|.||. +++|+|||.+|.|+|+|+++|||+|.|.+..
T Consensus 57 ~~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~-- 128 (160)
T 2jzx_A 57 NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-- 128 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC--
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC--
Confidence 66777777777777664332211111 01123677889998 8999999999999999999999999997532
Q ss_pred cccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcC
Q 040243 299 KEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQ 343 (797)
Q Consensus 299 k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~ 343 (797)
. ....+=.|.|+| +.+.+++|+++|..+|.
T Consensus 129 ~--------------~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 129 L--------------PNSTERAITIAG-IPQSIIECVKQICVVML 158 (160)
T ss_dssp S--------------TTCCEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred C--------------CCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 0 011234799999 79999999999998874
No 237
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=7.8e-08 Score=85.77 Aligned_cols=71 Identities=20% Similarity=0.483 Sum_probs=61.2
Q ss_pred CCcEEEEecCCCC------CcH---HHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeecc
Q 040243 490 DDTNLYIGYLPPT------LDD---DGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEG 560 (797)
Q Consensus 490 ~~~tLfVgNLp~~------vte---~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~G 560 (797)
...||+|.-++.. ..+ .+|.+.|.+||+|..++|+.|+ +||+|.+.++|.+||+ |||..++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3458999988642 332 4688999999999999999985 9999999999999998 99999999
Q ss_pred ceEEEEecC
Q 040243 561 RTIAVRVAG 569 (797)
Q Consensus 561 r~L~V~~A~ 569 (797)
|.|+|++-.
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999753
No 238
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.50 E-value=5.1e-08 Score=87.54 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=58.8
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHh-CcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERET-GAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQ 328 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eT-gakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~ 328 (797)
..+..|.||. .|++.|||++|+|+|+|+++| ||+|.|-..|+. .-.|.|+|.+.
T Consensus 16 ~vt~~i~Ip~------~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~-------------------~~~V~I~G~~~ 70 (95)
T 2ctj_A 16 IAEVEVSIPA------KLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG-------------------SDTVVIRGPSS 70 (95)
T ss_dssp SCCEEEECCH------HHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT-------------------CCEEEEESCHH
T ss_pred cEEEEEEECH------HHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC-------------------cceEEEEcCHH
Confidence 3567788998 899999999999999999999 999999876631 01799999877
Q ss_pred HHHHHHHHHHHHhcCC
Q 040243 329 ESLEGAAAMVEKLLQP 344 (797)
Q Consensus 329 e~v~~A~~~I~~ll~~ 344 (797)
.|++|+++|+.|+..
T Consensus 71 -~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 71 -DVEKAKKQLLHLAEE 85 (95)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhh
Confidence 999999999999753
No 239
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.46 E-value=1.9e-07 Score=92.12 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=58.0
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
..+.+|.||. +++|+|||.+|+|+|+|+++|||+|.|....... ....+-.|.|+| +.+
T Consensus 103 ~~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~~~~~~~v~I~G-~~~ 161 (174)
T 1j4w_A 103 LQEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPPN--------------ADPNMKLFTIRG-TPQ 161 (174)
T ss_dssp -CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTT--------------SCTTEEEEEEEC-CHH
T ss_pred cEEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCCC--------------CCCCceEEEEEC-CHH
Confidence 3577889997 8999999999999999999999999998643100 011223789999 789
Q ss_pred HHHHHHHHHHHhc
Q 040243 330 SLEGAAAMVEKLL 342 (797)
Q Consensus 330 ~v~~A~~~I~~ll 342 (797)
.+++|.++|+++|
T Consensus 162 ~v~~A~~~I~~~i 174 (174)
T 1j4w_A 162 QIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 240
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.42 E-value=3.6e-07 Score=88.89 Aligned_cols=73 Identities=26% Similarity=0.426 Sum_probs=59.3
Q ss_pred eEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHH
Q 040243 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQES 330 (797)
Q Consensus 251 ~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~ 330 (797)
.+.+|.||. +++|+|||.+|+|+|+|+++|||+|.|...+.. ....+-.|.|+| +.+.
T Consensus 2 ~~~~~~Vp~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------------~~~~~r~v~I~G-~~~~ 59 (164)
T 2jvz_A 2 TVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---------------NTNVDKPLRIIG-DPYK 59 (164)
T ss_dssp EEEEEEECT------TCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS---------------SSSSCEEEEEEE-CHHH
T ss_pred eEEEEEech------hheeEEECCChHHHHHHHHHhCCeEEEecCCCC---------------CCCCceEEEEEc-CHHH
Confidence 467899998 899999999999999999999999999643311 012233788999 7899
Q ss_pred HHHHHHHHHHhcCCC
Q 040243 331 LEGAAAMVEKLLQPV 345 (797)
Q Consensus 331 v~~A~~~I~~ll~~~ 345 (797)
|++|..+|..++...
T Consensus 60 v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 60 VQQACEMVMDILRER 74 (164)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998754
No 241
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.32 E-value=3.7e-07 Score=93.77 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=57.0
Q ss_pred CCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEe-ccccccccccccccCCCCCCCCCCCceE
Q 040243 243 PADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIR-GKGSVKEGRLQQKRDLKPDPSENEDLHV 321 (797)
Q Consensus 243 p~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~Ir-GkGS~k~g~~~~~~~~~~~~~~~e~LHv 321 (797)
.++|+|... +|.||. +.||.|||++|+|+|.|+++|||+|.|. ..| .|
T Consensus 28 ~s~~aP~i~--~i~IP~------~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g-----------------------~V 76 (219)
T 2e3u_A 28 WEEFFKQEE--YVKIPK------DRIAVLIGKKGQTKKEIEKRTKTKITIDSETG-----------------------EV 76 (219)
T ss_dssp -----CCEE--EEECCH------HHHHHHHCGGGHHHHHHHHHHTEEEEECTTTC-----------------------EE
T ss_pred cCCCCCEEE--EEEeCH------HHhhhhhcccHHHHHHHHHHHCcEEEEEcCCC-----------------------EE
Confidence 467888765 566998 9999999999999999999999999997 323 57
Q ss_pred EEEecC----HHHHHHHHHHHHHhcCC
Q 040243 322 LVEAET----QESLEGAAAMVEKLLQP 344 (797)
Q Consensus 322 ~I~a~~----~e~v~~A~~~I~~ll~~ 344 (797)
.|.+.+ .+++++|.++|+.|+..
T Consensus 77 ~I~~~~~t~d~~~i~kA~~~I~~i~rg 103 (219)
T 2e3u_A 77 WITSTKETEDPLAVWKARDIVLAIGRG 103 (219)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHHHHTT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhcc
Confidence 788876 89999999999999843
No 242
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.30 E-value=5.2e-07 Score=89.22 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=59.5
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
.++.+|.||. +++|+|||.+|+|+|+|+++|||+|.|...+.... ... +=.|.|+|. .+
T Consensus 5 ~~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~-------------~~~-er~v~I~G~-~~ 63 (178)
T 2anr_A 5 QYFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP-------------GTT-ERVCLIQGT-IE 63 (178)
T ss_dssp CEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCT-------------TSS-EEEEEEEEC-HH
T ss_pred CEEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCC-------------CCC-CceEEEEeC-HH
Confidence 4678999998 89999999999999999999999999975431110 111 125788886 88
Q ss_pred HHHHHHHHHHHhcCCC
Q 040243 330 SLEGAAAMVEKLLQPV 345 (797)
Q Consensus 330 ~v~~A~~~I~~ll~~~ 345 (797)
.+.+|.++|..++...
T Consensus 64 ~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 64 ALNAVHGFIAEKIREM 79 (178)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988653
No 243
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.29 E-value=5.5e-07 Score=88.80 Aligned_cols=70 Identities=20% Similarity=0.411 Sum_probs=57.4
Q ss_pred eEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHH
Q 040243 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQES 330 (797)
Q Consensus 251 ~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~ 330 (797)
.+.+|.||. +++|+|||.+|+|+|+|+++|||+|.|...- + ...+-.|.|++. .+.
T Consensus 3 ~~~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~----~-------------~~~~r~v~I~G~-~~~ 58 (174)
T 1j4w_A 3 HMIDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD----G-------------TTPERIAQITGP-PDR 58 (174)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECCT----T-------------SCSEEEEEEEEC-HHH
T ss_pred eEEEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecCC----C-------------CCCccEEEEEeC-HHH
Confidence 357888998 8999999999999999999999999997421 0 112237889988 899
Q ss_pred HHHHHHHHHHhcCC
Q 040243 331 LEGAAAMVEKLLQP 344 (797)
Q Consensus 331 v~~A~~~I~~ll~~ 344 (797)
|++|+++|+.+|..
T Consensus 59 v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 59 AQHAAEIITDLLRS 72 (174)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 244
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.22 E-value=1.1e-06 Score=85.42 Aligned_cols=69 Identities=26% Similarity=0.378 Sum_probs=57.9
Q ss_pred CceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCH
Q 040243 249 PKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQ 328 (797)
Q Consensus 249 ~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~ 328 (797)
..++.+|.||. +++|+|||.+|.|+|+|+++|||+|.|...|+ .+-.|.|+|. .
T Consensus 3 ~~~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~-------------------~~r~v~I~G~-~ 56 (160)
T 2jzx_A 3 VTLTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC-------------------PERIITLAGP-T 56 (160)
T ss_dssp CEEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT-------------------TEEEEEEEEE-H
T ss_pred ccEEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC-------------------CceEEEEEeC-H
Confidence 45678999998 89999999999999999999999999986431 1127889997 7
Q ss_pred HHHHHHHHHHHHhcC
Q 040243 329 ESLEGAAAMVEKLLQ 343 (797)
Q Consensus 329 e~v~~A~~~I~~ll~ 343 (797)
+.+.+|..+|..++.
T Consensus 57 ~~v~~A~~~I~~~i~ 71 (160)
T 2jzx_A 57 NAIFKAFAMIIDKLE 71 (160)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999987653
No 245
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.21 E-value=5.3e-07 Score=89.20 Aligned_cols=73 Identities=27% Similarity=0.321 Sum_probs=59.0
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
..+.+|.||. +++|+|||.+|+|+|+|+++|||+|.|....... ...+-.|.|+|.. +
T Consensus 103 ~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---------------~~~~~~v~I~G~~-~ 160 (178)
T 2anr_A 103 ANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---------------NLQNRVVTVSGEP-E 160 (178)
T ss_dssp GGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------------------CCEEEEEEESSH-H
T ss_pred ceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---------------CCCceEEEEEcCH-H
Confidence 3678999998 9999999999999999999999999998543100 0122378899975 8
Q ss_pred HHHHHHHHHHHhcCC
Q 040243 330 SLEGAAAMVEKLLQP 344 (797)
Q Consensus 330 ~v~~A~~~I~~ll~~ 344 (797)
++++|+.+|..+|..
T Consensus 161 ~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 161 QNRKAVELIIQKIQE 175 (178)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998864
No 246
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.17 E-value=6.6e-07 Score=106.21 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-CCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEecc
Q 040243 217 RARERLNKERQEIISQIIKRNPAF-KPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGK 295 (797)
Q Consensus 217 r~~~~le~er~~li~~~~~~~p~~-~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGk 295 (797)
.+.++-.+.+.+|++.|.+.+... ...+.|.|+..+.+ |+. ++||.||||+|+|+|.|.++||++|.|.+.
T Consensus 527 ~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~--i~~------~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d 598 (723)
T 3cdi_A 527 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIK--INP------DKIKDVIGKGGSVIRALTEETGTTIEIEDD 598 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEE--ECH------HHhcccccccceeeeeeehhhCceEEecCC
Confidence 456666778889999999988877 55789999998888 787 899999999999999999999999999976
Q ss_pred ccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcCCChH
Q 040243 296 GSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPVDE 347 (797)
Q Consensus 296 GS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~~~~e 347 (797)
| .|+|++.+.+.+++|.++|+.++.....
T Consensus 599 g-----------------------~v~I~~~~~~~~~~a~~~i~~i~~~~~v 627 (723)
T 3cdi_A 599 G-----------------------TVKIAATDGEKAKHAIRRIEEITAEIEV 627 (723)
T ss_dssp ----------------------------------------------------
T ss_pred c-----------------------cEEEecCCHHHHHHHHHHHHHHhhhhhc
Confidence 6 6889999999999999999988754433
No 247
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.13 E-value=2.6e-06 Score=82.96 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=56.3
Q ss_pred EEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHH
Q 040243 252 QKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESL 331 (797)
Q Consensus 252 ~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v 331 (797)
+.+|.||. +++|+|||.+|.|+|+|+++|||+|.|...+. ....+-.|.|+| +.+.+
T Consensus 4 ~~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~----------------~~~~~r~v~I~G-~~e~v 60 (163)
T 3krm_A 4 MVQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPPET----------------PDSKVRMVIITG-PPEAQ 60 (163)
T ss_dssp EEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSS----------------TTCSEEEEEEEE-CHHHH
T ss_pred EEEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCCCC----------------CCCCceEEEEEc-CHHHH
Confidence 56788998 89999999999999999999999999986441 011223688999 78999
Q ss_pred HHHHHHHHHhcC
Q 040243 332 EGAAAMVEKLLQ 343 (797)
Q Consensus 332 ~~A~~~I~~ll~ 343 (797)
.+|..+|..++.
T Consensus 61 ~~A~~~I~~~~~ 72 (163)
T 3krm_A 61 FKAQGRIYGKLK 72 (163)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998887764
No 248
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.01 E-value=8.3e-07 Score=105.75 Aligned_cols=95 Identities=23% Similarity=0.395 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccc
Q 040243 217 RARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKG 296 (797)
Q Consensus 217 r~~~~le~er~~li~~~~~~~p~~~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkG 296 (797)
.+.++-.+.|.+|++.|.+.+......+.|.|+..+.+ ||. ++||.||||+|+++|.|+++||++|.|.+.|
T Consensus 566 ~aL~~A~~~~~~I~~~m~~al~~~~~~~~~ap~~~~~~--I~~------~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG 637 (757)
T 1e3p_A 566 AALKQARDARLHILDVMMEAIDTPDEMSPNAPRIITVK--IPV------DKIGEVIGPKRQMINQIQEDTGAEITIEDDG 637 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCCCCTTSCBCCCC--------------------------CTTCCCCCSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCceeEEEE--ECh------HHeehcccccceeeehhhHhhCCEEEecCCc
Confidence 45666677888999999998876666789999998877 887 8899999999999999999999999998766
Q ss_pred cccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhc
Q 040243 297 SVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLL 342 (797)
Q Consensus 297 S~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll 342 (797)
.|+|++.+.+++++|.++|+.|+
T Consensus 638 -----------------------~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 638 -----------------------TIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -------------------------CCCBSSHHHHCC---------
T ss_pred -----------------------eEEEecCCHHHHHHHHHHHHHhc
Confidence 67888999999999988888876
No 249
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=2e-05 Score=71.85 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=66.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHHhhcC-----CCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceE
Q 040243 489 LDDTNLYIGYLPPTLDDDGLIRLFSTF-----GDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTI 563 (797)
Q Consensus 489 ~~~~tLfVgNLp~~vte~dL~~~Fs~f-----G~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L 563 (797)
.+.++|-+-||+..+++..|+.++..+ |.|++|.+..|. +-|+|+|.+...|-+|.-.|+|.+|+|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 456788899999999999999999999 999999999886 689999999999999998999999999999
Q ss_pred EEE
Q 040243 564 AVR 566 (797)
Q Consensus 564 ~V~ 566 (797)
+|.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 985
No 250
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.87 E-value=7.5e-06 Score=67.38 Aligned_cols=47 Identities=32% Similarity=0.762 Sum_probs=38.7
Q ss_pred cchhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCCCCC
Q 040243 370 EEYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKG 416 (797)
Q Consensus 370 ~~~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp~k~ 416 (797)
...|-+|++.||.+.+|+.....-...++|.+||+.||+++||+.+.
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCC
Confidence 45799999999999999987532123588999999999999998754
No 251
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.83 E-value=2.3e-05 Score=78.71 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=47.4
Q ss_pred ceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcCC
Q 040243 266 NFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQP 344 (797)
Q Consensus 266 NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~~ 344 (797)
..+|+|||++|.|+|.||..|||+|.|.|+ .|.|.| +.+.++.|...|++||..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~------------------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY------------------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS------------------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC------------------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 368999999999999999999999999753 577777 588899999999999875
No 252
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.63 E-value=5.5e-05 Score=72.69 Aligned_cols=72 Identities=18% Similarity=0.406 Sum_probs=56.6
Q ss_pred EEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCc-EEEEeccccccccccccccCCCCCCCCCCC-ceEEEEecCHHH
Q 040243 253 KKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGA-KIVIRGKGSVKEGRLQQKRDLKPDPSENED-LHVLVEAETQES 330 (797)
Q Consensus 253 ~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTga-kI~IrGkGS~k~g~~~~~~~~~~~~~~~e~-LHv~I~a~~~e~ 330 (797)
..|.||. +.+|++||-+|.|+|.|+++||| +|.|.+..... ...++. --|.|+| +.++
T Consensus 69 ~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~-------------~~~~~~~~~vtI~G-~~~~ 128 (144)
T 2qnd_A 69 DVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN-------------VPQEEGMVPFVFVG-TKDS 128 (144)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC-------------CCCCTTEEEEEEEE-EHHH
T ss_pred EEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC-------------ccccCCeeEEEEEe-CHHH
Confidence 7888998 88999999999999999999997 99998643100 011222 2477888 4789
Q ss_pred HHHHHHHHHHhcCC
Q 040243 331 LEGAAAMVEKLLQP 344 (797)
Q Consensus 331 v~~A~~~I~~ll~~ 344 (797)
+++|..+|+.+|..
T Consensus 129 v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 129 IANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 253
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.63 E-value=5.5e-05 Score=77.63 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=47.8
Q ss_pred eeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcCCC
Q 040243 267 FIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQPV 345 (797)
Q Consensus 267 fiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~~~ 345 (797)
.+|+|||.+|.|+|.||+.|||+|.|.|+ .|.|.| +.+.++.|..+|++||...
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~------------------------~v~i~G-~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK------------------------TVAIIG-NPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT------------------------EEEEEE-CHHHHHHHHHHHHHHHTTC
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe------------------------EEEEEe-CHHHHHHHHHHHHHHHcCC
Confidence 59999999999999999999999999741 588888 5789999999999999753
No 254
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.61 E-value=3.4e-05 Score=60.67 Aligned_cols=41 Identities=29% Similarity=0.635 Sum_probs=35.7
Q ss_pred chhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCCCCC
Q 040243 371 EYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKG 416 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp~k~ 416 (797)
..|-+||+.||...+|+... .+.|.+||+.||+++||+.+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~~-----~~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAPR-----RQGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCSS-----CCSCSSSCCSSCCGGGCCSSC
T ss_pred CeeeecCCCCcChhhCcCCC-----CCeeCcCCCcCCccCCCcCCC
Confidence 47999999999999999742 468999999999999998753
No 255
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.60 E-value=2.7e-05 Score=58.26 Aligned_cols=37 Identities=32% Similarity=0.706 Sum_probs=32.9
Q ss_pred hhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCC
Q 040243 372 YCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCL 413 (797)
Q Consensus 372 ~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp 413 (797)
.|-+||+.||.+.+|+.. ..+.|..||+.||+++||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~-----~~~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP-----RQEGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC-----CCSSCTTTCCSSSCTTTSC
T ss_pred eeeccCCCCcccccCCCC-----CCCccccCCCCCCccCcCc
Confidence 488999999999999964 2468999999999999997
No 256
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.54 E-value=3.2e-05 Score=57.17 Aligned_cols=35 Identities=34% Similarity=0.812 Sum_probs=31.7
Q ss_pred hhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCC
Q 040243 372 YCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCL 413 (797)
Q Consensus 372 ~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp 413 (797)
.|-+||+.||.+.+|+.. +.|.+||+.||+++||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~-------~~C~~Cg~~GH~a~~C~ 36 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP-------KVCFKCKQPGHFSKQCR 36 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB-------TTCSSCCCTTGGGGTTC
T ss_pred cccccCCCCcchhhCcCc-------CeEccCCCcCCccCcCc
Confidence 488999999999999853 68999999999999997
No 257
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=3.6e-05 Score=63.73 Aligned_cols=42 Identities=24% Similarity=0.546 Sum_probs=36.5
Q ss_pred chhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCCCCC
Q 040243 371 EYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKG 416 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp~k~ 416 (797)
..|-+|++.||.+.+|+... ..+.|.+||+.||+++||+.+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~----~~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPP----QPKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCC----CSSCCTTTCCSSSCTTTCTGGG
T ss_pred CcccccCCCCcChhhCCCCC----CCCccCCcCCcCCccCcCCCcc
Confidence 46999999999999999653 4578999999999999998753
No 258
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.49 E-value=2.9e-05 Score=63.53 Aligned_cols=45 Identities=31% Similarity=0.572 Sum_probs=19.4
Q ss_pred hhcccCCCCCccccCCCCCCCc---cccccceecCCCCCCcccCCCCC
Q 040243 372 YCRLCGEPGHRQYACPSRTSTF---KSDVLCKICGDGGHPTIDCLVKG 416 (797)
Q Consensus 372 ~c~~cg~~gh~~~~cp~~~~~~---~~~v~Cr~CG~~gH~t~dCp~k~ 416 (797)
.|-+|++.||.+.+|+...... ...++|..||+.||+++||+.+.
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp --------------------------CCCSCSSCSSCSSCSTTCCCTT
T ss_pred ccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCcc
Confidence 4889999999999999864211 13688999999999999998764
No 259
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.49 E-value=5e-05 Score=64.93 Aligned_cols=42 Identities=24% Similarity=0.546 Sum_probs=36.6
Q ss_pred chhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCCCCC
Q 040243 371 EYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKG 416 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp~k~ 416 (797)
..|-+||+.||...+|+... ..+.|.+||+.||+++||+.+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~~~----~~~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKLPP----QPKKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp SCCTTTCCSSSCTTTCSSCC----CCCCCTTTCCTTSCGGGCTTGG
T ss_pred CcccccCCcCcCcccCCCCC----CCCccCCcCCcCCccCcCcCCc
Confidence 47999999999999998643 4578999999999999998754
No 260
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.34 E-value=9.8e-05 Score=59.28 Aligned_cols=40 Identities=33% Similarity=0.682 Sum_probs=35.2
Q ss_pred chhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCCCC
Q 040243 371 EYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp~k 415 (797)
..|-+||+.||.+.+|+.. ....|..||+.||+++||+.+
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~-----~~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAP-----RKKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSC-----SCCBCTTTCCBSSCGGGCSSS
T ss_pred cceeeeCCCCcChhhcCCC-----CCCEeCCCCCcCCccCCCcCc
Confidence 4799999999999999874 346899999999999999864
No 261
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00011 Score=64.28 Aligned_cols=47 Identities=32% Similarity=0.629 Sum_probs=37.4
Q ss_pred chhcccCCCCCccccCCCCCCCc---------------cccccceecCCCCCCcccCCCCCc
Q 040243 371 EYCRLCGEPGHRQYACPSRTSTF---------------KSDVLCKICGDGGHPTIDCLVKGT 417 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~~~~~---------------~~~v~Cr~CG~~gH~t~dCp~k~~ 417 (797)
..|.+|++.||.+-+||+.+.-| ...+.|..||+.|||.+||+....
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~r~ 67 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKRS 67 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSCGGGCSSCCS
T ss_pred CCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcCcccCCcccc
Confidence 47999999999999999863211 134889999999999999998653
No 262
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.25 E-value=0.0003 Score=63.72 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=54.7
Q ss_pred eEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHH-hCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERE-TGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 251 ~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~e-TgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
.+.+|.||. .|-+.|||.+|.|+|+|+++ ++++|.+-.. ++ .|.|+|. .+
T Consensus 27 ~t~~i~vp~------~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~---------------------~~-~ItI~G~-~~ 77 (102)
T 2ctf_A 27 TVSSVAAPS------WLHRFIIGKKGQNLAKITQQMPKVHIEFTEG---------------------ED-KITLEGP-TE 77 (102)
T ss_dssp EEEEEECCS------TTHHHHHTTTTCHHHHHHHHCSSSEEEECSS---------------------SC-EEEEEEC-HH
T ss_pred EEEEEEeCH------HHHhhhcCCCCccHHHHHHHcCCcEEEeCCC---------------------CC-EEEEECC-HH
Confidence 678899998 67789999999999999997 5898877630 01 6999999 88
Q ss_pred HHHHHHHHHHHhcCC
Q 040243 330 SLEGAAAMVEKLLQP 344 (797)
Q Consensus 330 ~v~~A~~~I~~ll~~ 344 (797)
.|++|.++|+.++..
T Consensus 78 ~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 78 DVSVAQEQIEGMVKD 92 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 263
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=97.18 E-value=0.00016 Score=69.77 Aligned_cols=42 Identities=24% Similarity=0.546 Sum_probs=36.5
Q ss_pred chhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCCCCC
Q 040243 371 EYCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVKG 416 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp~k~ 416 (797)
..|-+||+.||.+-+|+... ....|.+||+.||+++||+.+.
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~----~~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPP----QPKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCC----CCCCCTTTCCSSCCGGGCTTTT
T ss_pred CcccEeCCccchhhhCCCCC----CCCcccccCCcCCEeccCcCCC
Confidence 46999999999999999744 3568999999999999999763
No 264
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.0017 Score=58.89 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=62.0
Q ss_pred CcEEEEecCCCCC-cH----HHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEE
Q 040243 491 DTNLYIGYLPPTL-DD----DGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAV 565 (797)
Q Consensus 491 ~~tLfVgNLp~~v-te----~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V 565 (797)
.++|+|.||+..+ .. +.++++|..|+.+.....++.- .-..|.|.+.++|.+|-..|++..++|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998765 22 4678999999999887766642 35679999999999999999999999999999
Q ss_pred EecC
Q 040243 566 RVAG 569 (797)
Q Consensus 566 ~~A~ 569 (797)
-++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9987
No 265
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.73 E-value=0.0024 Score=70.30 Aligned_cols=83 Identities=13% Similarity=0.240 Sum_probs=63.0
Q ss_pred CCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCc--hhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCC
Q 040243 241 KPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRG--NTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENED 318 (797)
Q Consensus 241 ~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG--~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~ 318 (797)
.+.-+-+.-.++.++.||. .|.+.|||.+| .+||+|.+||||+|.+=..+. ++.. . ... .
T Consensus 20 ~~~le~~~~~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~--~~~~-------~--~~k-s 81 (376)
T 3n89_A 20 IPMIEINPTRVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSV--GGTT-------P--DPF-A 81 (376)
T ss_dssp SCCCCCCTTEEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCC--CSSS-------C--CTT-T
T ss_pred ceEEEecCCEEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCcc--cccC-------C--cCC-C
Confidence 4555667778999999998 78889999999 999999999999999965431 0100 0 000 0
Q ss_pred ceEEEEecCHHHHHHHHHHHHHhc
Q 040243 319 LHVLVEAETQESLEGAAAMVEKLL 342 (797)
Q Consensus 319 LHv~I~a~~~e~v~~A~~~I~~ll 342 (797)
=-|.|+|. .++|++|.+.|..++
T Consensus 82 ~~VtItG~-~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 82 QQVTITGY-FGDVDRARMLMRRNC 104 (376)
T ss_dssp TEEEEEEE-HHHHHHHHHHHHHSC
T ss_pred CeEEEEcC-HHHHHHHHHHHHhcC
Confidence 15899997 789999999999863
No 266
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.00084 Score=62.60 Aligned_cols=44 Identities=32% Similarity=0.643 Sum_probs=32.2
Q ss_pred chhcccCCCCCccccCCCCCCCc---------------cccccceecCCCCCCcccCCC
Q 040243 371 EYCRLCGEPGHRQYACPSRTSTF---------------KSDVLCKICGDGGHPTIDCLV 414 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~~~~~---------------~~~v~Cr~CG~~gH~t~dCp~ 414 (797)
..|.+||+.||...+||+.+..| ...+.|..||+.|||++||+.
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCC
T ss_pred ccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcC
Confidence 46888888888888888764321 135788888888888888874
No 267
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.61 E-value=0.0031 Score=69.33 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCC-CCceEEEEEecCCCCCCCceeeeeeCCCc--hhHHHHHHHhCcEEEEeccc
Q 040243 220 ERLNKERQEIISQIIKRNPAFKPPADYR-PPKLQKKLYIPMKEYPGYNFIGLIIGPRG--NTQKRMERETGAKIVIRGKG 296 (797)
Q Consensus 220 ~~le~er~~li~~~~~~~p~~~pp~dy~-p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG--~t~K~le~eTgakI~IrGkG 296 (797)
+.+++++..|++++.+. .++ -..++..|-|+. .++..|||-+| .+|++|.++|||+|.+-..+
T Consensus 162 ~~akeA~~~Ll~~l~~~--------e~~~~~~~s~~v~V~~------~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~ 227 (376)
T 3n89_A 162 HELIEAAKRLNEILFRE--------SPAPENNFTLHFTLST------YYVDQVLGSSSTAQLMPVIERETTTIISYPCYN 227 (376)
T ss_dssp HHHHHHHHHHHHHHCC----------CCCSSCEEEEEEEEG------GGHHHHTCCTTSCCHHHHHHHHHTCEEECC---
T ss_pred HHHHHHHHHHHHHHHhh--------hcccccceEEEEEeCH------HHHHHhhcCCCcchHHHHHHHhhCCEEECCCCC
Confidence 56777888888887432 222 234667777887 66789999999 56799999999999987766
Q ss_pred cccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcC
Q 040243 297 SVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQ 343 (797)
Q Consensus 297 S~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~ 343 (797)
+..+.. ...-.|.|+| +.++|.+|.+.|+.||=
T Consensus 228 d~~d~~-------------~~~~~ItItG-s~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 228 NRNETR-------------GNIYEIKVVG-NIDNVLKARRYIMDLLP 260 (376)
T ss_dssp -------------------CCEEEEEEES-CHHHHHHHHHHHHHTSE
T ss_pred Cccccc-------------CCceEEEEEe-CHHHHHHHHHHHHhhCC
Confidence 432211 1122789999 78999999999999873
No 268
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=96.42 E-value=0.0031 Score=63.31 Aligned_cols=69 Identities=26% Similarity=0.377 Sum_probs=55.8
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEE----e
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVE----A 325 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~----a 325 (797)
+.+.+|.||. +-+|.|||-.|.|+|.|++++||+|.|..+ ++ -|.|. .
T Consensus 3 ~~~~~i~VP~------~rvg~liGk~g~~~k~i~e~~g~~i~id~~----~~------------------~V~i~t~~~t 54 (191)
T 1tua_A 3 KPRIYVKVKP------ERLGAVIGPRGEVKAEIMRRTGTVITVDTE----NS------------------MVIVEPEAEG 54 (191)
T ss_dssp CCCEEEECCG------GGHHHHHCGGGHHHHHHHHHHTEEEEEETT----TT------------------EEEEEESSTT
T ss_pred CcceEEECCH------HHhhHHHhcCHhHHHHHHHHHCcEEEEEcC----CC------------------eEEEEeCCCC
Confidence 4457899998 889999999999999999999999999743 11 33444 2
Q ss_pred cCHHHHHHHHHHHHHhcCCCh
Q 040243 326 ETQESLEGAAAMVEKLLQPVD 346 (797)
Q Consensus 326 ~~~e~v~~A~~~I~~ll~~~~ 346 (797)
.+...+.+|.++|+.+...+.
T Consensus 55 ~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 55 IPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp SCHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHcCCC
Confidence 466799999999999887654
No 269
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.40 E-value=0.0028 Score=60.74 Aligned_cols=62 Identities=15% Similarity=0.393 Sum_probs=46.7
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHH
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQE 329 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e 329 (797)
.++++|.||. +++|++||.+|.++|+|++|+| |.|--- .+++--+.+.+-+.+
T Consensus 3 ~~~~~~~Vp~------~~vG~~IG~~G~~I~~i~~e~g--I~ii~~-------------------~~~~~~~i~~~~~p~ 55 (144)
T 2qnd_A 3 RFHEQFIVRE------DLMGLAIGTHGANIQQARKVPG--VTAIDL-------------------DEDTCTFHIYGEDQD 55 (144)
T ss_dssp -CEEEEECCG------GGHHHHHCGGGHHHHHHHTSTT--EEEEEE-------------------ETTTTEEEEEESSHH
T ss_pred ceEEEEEECC------cceeeEECCChhHHHHHHHHHC--CeEecc-------------------CCCchheeeccCCHH
Confidence 4678999998 9999999999999999999999 443210 012225678888899
Q ss_pred HHHHHHHHH
Q 040243 330 SLEGAAAMV 338 (797)
Q Consensus 330 ~v~~A~~~I 338 (797)
++.+|.+++
T Consensus 56 ~v~~~~~~l 64 (144)
T 2qnd_A 56 AVKKARSFL 64 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888886544
No 270
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.35 E-value=0.0018 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.0
Q ss_pred cccccceecCCCCCCcccCCCCCc
Q 040243 394 KSDVLCKICGDGGHPTIDCLVKGT 417 (797)
Q Consensus 394 ~~~v~Cr~CG~~gH~t~dCp~k~~ 417 (797)
...+.|++||+.|||++|||.+..
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCCCeeeECCCCCcchhhCcCCcc
Confidence 467899999999999999998654
No 271
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0028 Score=59.07 Aligned_cols=40 Identities=30% Similarity=0.703 Sum_probs=25.5
Q ss_pred hhcccCCCCCccccCCCCCCCccccccceecCCCCCCcccCCCC
Q 040243 372 YCRLCGEPGHRQYACPSRTSTFKSDVLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 372 ~c~~cg~~gh~~~~cp~~~~~~~~~v~Cr~CG~~gH~t~dCp~k 415 (797)
.|.+|++.||.+.+||... ..+.|.+||+.||+++||+..
T Consensus 44 ~C~~Cg~~GH~~~~C~~~~----~~~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 44 QCSKCDEVGHYRSQCPHKW----KKVQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CSSSSSCSSSSTTTSCCCC----CCCSSSSSCSSCCCTTTCCCS
T ss_pred cccccCCCCCccccCcCcc----cCccCCCCCcCCcchhhCCCc
Confidence 4666666666666666542 235677777777777777653
No 272
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.023 Score=51.30 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=58.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhc-----CCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEE
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFST-----FGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIA 564 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~-----fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~ 564 (797)
...+|.|.||+..+.++.|.-+|+. -|+|.+|.... +-|+|+|.+.+.|++.|+. ..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4568999999999999999999987 26888887643 4789999999999999963 46788888888
Q ss_pred EEec
Q 040243 565 VRVA 568 (797)
Q Consensus 565 V~~A 568 (797)
|.-.
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8653
No 273
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.00 E-value=0.023 Score=50.87 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=47.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcC
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN 554 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~Ln 554 (797)
..+-++| ++|..+...||..+|+.|| -..|+++-|. -|||.|.+.+.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3455666 9999999999999999999 4567888885 89999999999999998653
No 274
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=95.67 E-value=0.0041 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.6
Q ss_pred ccccccceecCCCCCCcccCCCCCc
Q 040243 393 FKSDVLCKICGDGGHPTIDCLVKGT 417 (797)
Q Consensus 393 ~~~~v~Cr~CG~~gH~t~dCp~k~~ 417 (797)
....+.|++||+.|||++||+.+..
T Consensus 20 ~~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 20 QLDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TCCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCCcceeCCCCCcccccCcCCcc
Confidence 3578899999999999999998654
No 275
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.53 E-value=0.042 Score=48.64 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=57.3
Q ss_pred cEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCc--ccceEEEEecCHHHHHHHHHhcCceeecc
Q 040243 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGM--SKGYGFVKYADIQMANNAIASMNGYRLEG 560 (797)
Q Consensus 492 ~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGk--srGfaFV~F~s~e~A~~AI~~LnG~~l~G 560 (797)
++|.|++||..+||+++.+.++....+....++..+.+.+ .-.-|||.|.+.+++..-.+.++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5899999999999999999999998877776665554333 23678999999999999999999998753
No 276
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.28 E-value=0.022 Score=51.15 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=46.9
Q ss_pred cEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcC
Q 040243 492 TNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN 554 (797)
Q Consensus 492 ~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~Ln 554 (797)
+-++| ++|..+...||..+|+.|| -..|+++-|. -|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 5678888885 89999999999999998664
No 277
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.08 E-value=0.06 Score=49.94 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeecc-ceEEEE
Q 040243 488 ELDDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEG-RTIAVR 566 (797)
Q Consensus 488 ~~~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~G-r~L~V~ 566 (797)
..+.+-|.|-+.+... -..|...|++||+|++..... ...+-.|.|.+..+|++||. .||..|+| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3456788888998874 567788999999999987621 23599999999999999996 59999985 455565
Q ss_pred ec
Q 040243 567 VA 568 (797)
Q Consensus 567 ~A 568 (797)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 278
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=95.07 E-value=0.0069 Score=41.21 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=17.5
Q ss_pred cccceecCCCCCCcccCCCC
Q 040243 396 DVLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 396 ~v~Cr~CG~~gH~t~dCp~k 415 (797)
.+.|..||+.|||++||+..
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC
T ss_pred CCeeEeCCCCCcccccCCCc
Confidence 36799999999999999865
No 279
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=94.96 E-value=0.027 Score=53.20 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCC
Q 040243 237 NPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSEN 316 (797)
Q Consensus 237 ~p~~~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~ 316 (797)
+|-+..+.+.+.+. .+||.. ..+|.||||+|+.|+.||..|++.|.|.--.| .
T Consensus 45 ~PwW~~~e~L~dPl---VF~vE~------~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------------------~ 97 (140)
T 3v69_A 45 LPKWFHVECLEDPK---RLYVEP------RLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------------------E 97 (140)
T ss_dssp CCTTCCGGGGSSCE---EEEECG------GGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------------------T
T ss_pred CCCccCHHHCCCCe---EEEEeh------hhhhcccCCCcCccchHHhhcceeEEEeccCC------------------C
Confidence 34455555555443 345666 89999999999999999999999999982221 1
Q ss_pred CCceEEEEecCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 040243 317 EDLHVLVEAETQESLEGAAAMVEKLLQPVDEVLNEHKRQQLRELAAL 363 (797)
Q Consensus 317 e~LHv~I~a~~~e~v~~A~~~I~~ll~~~~e~~n~~k~~Ql~ela~l 363 (797)
.---|.|.|... .=.+|+.+|..|. +.-|+.|.|...|
T Consensus 98 g~tEVtIfG~~~-~Q~rak~MI~sLA--------~~hr~~~~~~~~~ 135 (140)
T 3v69_A 98 RRAEIWIFGPPP-FRRDVDRMLTDLA--------HYCRMKLMEIEAL 135 (140)
T ss_dssp SCEEEEEESCHH-HHHHHHHHHHHHH--------HHHHHHHHHHC--
T ss_pred CcEEEEEECCHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 112688888754 2234555565554 3345556665444
No 280
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.32 E-value=0.034 Score=52.76 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=30.3
Q ss_pred EEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCcee
Q 040243 520 MAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYR 557 (797)
Q Consensus 520 ~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~ 557 (797)
.++|+++. .+++|||||+|.+.++|++|++.+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 46788875 3799999999999999999998887643
No 281
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=93.66 E-value=0.022 Score=39.64 Aligned_cols=20 Identities=30% Similarity=0.710 Sum_probs=17.9
Q ss_pred ccccceecCCCCCCcccCCC
Q 040243 395 SDVLCKICGDGGHPTIDCLV 414 (797)
Q Consensus 395 ~~v~Cr~CG~~gH~t~dCp~ 414 (797)
..+.|..||..||++++|+.
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCS
T ss_pred CCCEEEECCccccCHhHCcc
Confidence 45789999999999999975
No 282
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.12 E-value=0.054 Score=51.08 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=38.1
Q ss_pred CCcccceEEEEecCHHHHHHHHHhc-CceeeccceEEEEecCCC
Q 040243 529 TGMSKGYGFVKYADIQMANNAIASM-NGYRLEGRTIAVRVAGKP 571 (797)
Q Consensus 529 TGksrGfaFV~F~s~e~A~~AI~~L-nG~~l~Gr~L~V~~A~~~ 571 (797)
..+.+|+++|+|.+.++|++|++.| ||..++| .++|.++...
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4567899999999999999999999 9999999 9999988753
No 283
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.20 E-value=0.12 Score=48.76 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=53.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEE-EEec------------CCCC-cccceEEEEecCHHHHHHHHHhcCc
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAK-VIKD------------RVTG-MSKGYGFVKYADIQMANNAIASMNG 555 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~-v~~d------------k~TG-ksrGfaFV~F~s~e~A~~AI~~LnG 555 (797)
..+-|.|-+.+... ...+.+.|++||.|++-. +.++ +.-. ....+-.|+|++..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34567777887654 466778999999987722 1110 0000 124678999999999999996 599
Q ss_pred eeeccceEEEEecC
Q 040243 556 YRLEGRTIAVRVAG 569 (797)
Q Consensus 556 ~~l~Gr~L~V~~A~ 569 (797)
..|+|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877776543
No 284
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.15 E-value=0.22 Score=44.59 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=56.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCC-c-ccceEEEEecCHHHHHHHHHhcCceeeccc-----e
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTG-M-SKGYGFVKYADIQMANNAIASMNGYRLEGR-----T 562 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TG-k-srGfaFV~F~s~e~A~~AI~~LnG~~l~Gr-----~ 562 (797)
..-+|.|+.||+.+||+++.+.++..-++....++..+.+. . .-.-|||.|.+.++...-.+.++|+.+-+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 34579999999999999998888776554332322222221 1 225789999999999999999999987532 3
Q ss_pred EEEEec
Q 040243 563 IAVRVA 568 (797)
Q Consensus 563 L~V~~A 568 (797)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 456665
No 285
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.02 E-value=0.067 Score=60.48 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHh
Q 040243 490 DDTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIAS 552 (797)
Q Consensus 490 ~~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~ 552 (797)
..++|||. .+..+++.+|.++|++||.|.++.+.+++ | -|+.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 45789997 78899999999999999999999887654 2 5999999999999987653
No 286
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.99 E-value=0.049 Score=43.78 Aligned_cols=22 Identities=36% Similarity=0.732 Sum_probs=18.7
Q ss_pred ccccceecCCCCCCcccCCCCC
Q 040243 395 SDVLCKICGDGGHPTIDCLVKG 416 (797)
Q Consensus 395 ~~v~Cr~CG~~gH~t~dCp~k~ 416 (797)
...+|..||..|||.++|+.++
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGGG
T ss_pred CCCccccCCCcCcccccCCCCC
Confidence 4568999999999999998543
No 287
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=86.18 E-value=0.2 Score=36.99 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=17.0
Q ss_pred ccceecCCCCCCcccCCCC
Q 040243 397 VLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 397 v~Cr~CG~~gH~t~dCp~k 415 (797)
|.|..||+.||++++|+..
T Consensus 1 i~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp CBCTTTCCBSSCTTTCCSC
T ss_pred CeeeccCCCCcccccCCCC
Confidence 5799999999999999863
No 288
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=84.72 E-value=0.36 Score=40.96 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=19.5
Q ss_pred CCCccccCCCCCCC-----ccccccceecCCCCCCcccCCC
Q 040243 379 PGHRQYACPSRTST-----FKSDVLCKICGDGGHPTIDCLV 414 (797)
Q Consensus 379 ~gh~~~~cp~~~~~-----~~~~v~Cr~CG~~gH~t~dCp~ 414 (797)
.||..=+|+..... -...+.|..||+.||++++|+.
T Consensus 2 ~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp ----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSS
T ss_pred CccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCC
Confidence 46666677654311 1245789999999999999985
No 289
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.47 E-value=0.19 Score=64.98 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=10.5
Q ss_pred hHHHHHHHhCcEEEEecc
Q 040243 278 TQKRMERETGAKIVIRGK 295 (797)
Q Consensus 278 t~K~le~eTgakI~IrGk 295 (797)
.|++||+..=-+|.|+|-
T Consensus 1265 ~l~~l~~~~l~~~~i~Gi 1282 (1752)
T 3h0g_A 1265 FLKTIEGHMLESISLRGV 1282 (1752)
T ss_dssp HHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHhhccceEEecC
Confidence 477777554445666663
No 290
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=84.06 E-value=0.51 Score=35.39 Aligned_cols=26 Identities=31% Similarity=0.733 Sum_probs=21.6
Q ss_pred CCcCccchhcccCCCCCccccCCCCC
Q 040243 365 GTIRDEEYCRLCGEPGHRQYACPSRT 390 (797)
Q Consensus 365 Gt~r~~~~c~~cg~~gh~~~~cp~~~ 390 (797)
+...+...|.+||+.||-+.+||...
T Consensus 5 ~~~~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 5 RSQLDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CCSCCSSSCSSSCCTTCCTTSCSSSC
T ss_pred cCCCCCCeeeECCCCCcchhhCcCCc
Confidence 34445678999999999999999875
No 291
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=83.61 E-value=0.38 Score=35.09 Aligned_cols=19 Identities=32% Similarity=0.711 Sum_probs=16.6
Q ss_pred ccceecCCCCCCcccCCCC
Q 040243 397 VLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 397 v~Cr~CG~~gH~t~dCp~k 415 (797)
+.|..||+.||++++|+..
T Consensus 1 ~~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 1 QTCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CCBSSSCCSSCCTTTSSCB
T ss_pred CcccccCCCCcchhhCcCc
Confidence 4699999999999999863
No 292
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=82.74 E-value=0.39 Score=37.30 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=18.4
Q ss_pred ccccceecCCCCCCcccCCCC
Q 040243 395 SDVLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 395 ~~v~Cr~CG~~gH~t~dCp~k 415 (797)
..+.|..||+.||++++|+..
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCCS
T ss_pred CcCeeeecCCCCcChhhCcCC
Confidence 457899999999999999864
No 293
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=82.00 E-value=0.53 Score=38.23 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=18.8
Q ss_pred ccccceecCCCCCCcccCCCCC
Q 040243 395 SDVLCKICGDGGHPTIDCLVKG 416 (797)
Q Consensus 395 ~~v~Cr~CG~~gH~t~dCp~k~ 416 (797)
..+.|..||+.||++++|+...
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTTT
T ss_pred CCCcccccCCCCeehhhCcCCc
Confidence 3568999999999999998753
No 294
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=80.47 E-value=0.77 Score=36.93 Aligned_cols=26 Identities=31% Similarity=0.733 Sum_probs=21.4
Q ss_pred CCcCccchhcccCCCCCccccCCCCC
Q 040243 365 GTIRDEEYCRLCGEPGHRQYACPSRT 390 (797)
Q Consensus 365 Gt~r~~~~c~~cg~~gh~~~~cp~~~ 390 (797)
+...+...|.+||+.||-+++||...
T Consensus 18 ~~~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 18 RSQLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp STTCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCCCCCcceeCCCCCcccccCcCCc
Confidence 33445578999999999999999875
No 295
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=79.70 E-value=0.6 Score=36.95 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=18.4
Q ss_pred ccccceecCCCCCCcccCCCC
Q 040243 395 SDVLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 395 ~~v~Cr~CG~~gH~t~dCp~k 415 (797)
..+.|..||+.||++++|+..
T Consensus 11 ~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GTCBCTTTCCBSSCGGGCSSC
T ss_pred CCcceeeeCCCCcChhhcCCC
Confidence 457899999999999999864
No 296
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=76.47 E-value=0.81 Score=39.70 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=16.7
Q ss_pred ccccceecCCCCCCcccCCCC
Q 040243 395 SDVLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 395 ~~v~Cr~CG~~gH~t~dCp~k 415 (797)
..+.|..||..||++++||..
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGG
T ss_pred ccCCCCCCCCCCCccccCCCc
Confidence 568899999999999999864
No 297
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.20 E-value=0.93 Score=37.07 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.0
Q ss_pred ccccceecCCCCCCcccCCCC
Q 040243 395 SDVLCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 395 ~~v~Cr~CG~~gH~t~dCp~k 415 (797)
..+.|..||+.||++++|+..
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCSC
T ss_pred CCCcccccCCCCcChhhCCCC
Confidence 346799999999999999863
No 298
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=73.69 E-value=0.67 Score=37.33 Aligned_cols=18 Identities=33% Similarity=0.728 Sum_probs=0.0
Q ss_pred cceecCCCCCCcccCCCC
Q 040243 398 LCKICGDGGHPTIDCLVK 415 (797)
Q Consensus 398 ~Cr~CG~~gH~t~dCp~k 415 (797)
.|..||+.||++++|+..
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp ------------------
T ss_pred ccccCCCCCcCHhhCcCC
Confidence 699999999999999864
No 299
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=73.33 E-value=1.8 Score=41.37 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=27.4
Q ss_pred ceeeeeeCCCchhHHHHHHHhCcEEEEecc
Q 040243 266 NFIGLIIGPRGNTQKRMERETGAKIVIRGK 295 (797)
Q Consensus 266 NfiG~iiGPrG~t~K~le~eTgakI~IrGk 295 (797)
+.+|..||++|..+|.|++++|-||.|-.-
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 569999999999999999999999988753
No 300
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.85 E-value=5.3 Score=45.54 Aligned_cols=55 Identities=25% Similarity=0.430 Sum_probs=45.9
Q ss_pred CcEEEEecCCCCCcHHHHHHHhhcCCCEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcC
Q 040243 491 DTNLYIGYLPPTLDDDGLIRLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMN 554 (797)
Q Consensus 491 ~~tLfVgNLp~~vte~dL~~~Fs~fG~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~Ln 554 (797)
.+.++|+ ++..+...+|.++|+.||. .+|+++.|. .|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4567776 8888889999999999994 567776664 89999999999999998875
No 301
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=67.74 E-value=10 Score=38.81 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=41.4
Q ss_pred ceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHh
Q 040243 266 NFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKL 341 (797)
Q Consensus 266 NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~l 341 (797)
+++.+++|++|.-++.|.+.++|+|.|=-.| .|+|.+.+.+.+..+...|+.+
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG-----------------------~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFVARNG-----------------------RIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEETTT-----------------------EEEEECSCHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEeCCC-----------------------EEEEecCCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999994334 7999998876555444444443
No 302
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=67.01 E-value=9 Score=31.73 Aligned_cols=68 Identities=13% Similarity=0.290 Sum_probs=43.0
Q ss_pred EEEEec-CCCCCcHHHHHHHhhcCC-----CEEEEEEEecCCCCcccceEEEEecCHHHHHHHHHhcCceeeccceEEEE
Q 040243 493 NLYIGY-LPPTLDDDGLIRLFSTFG-----DIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRTIAVR 566 (797)
Q Consensus 493 tLfVgN-Lp~~vte~dL~~~Fs~fG-----~I~~v~v~~dk~TGksrGfaFV~F~s~e~A~~AI~~LnG~~l~Gr~L~V~ 566 (797)
+|||.. --..+...+|..++..-+ .|-.|.|..+ |.||+... +.|..+++.|++..+.|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 566631 123466677777776543 5566666433 89998875 45778888999999999999998
Q ss_pred ecC
Q 040243 567 VAG 569 (797)
Q Consensus 567 ~A~ 569 (797)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 775
No 303
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=66.48 E-value=1.9 Score=41.33 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=18.1
Q ss_pred ccccceecCCCCCCcccCCC
Q 040243 395 SDVLCKICGDGGHPTIDCLV 414 (797)
Q Consensus 395 ~~v~Cr~CG~~gH~t~dCp~ 414 (797)
..+.|..||..||++++|+.
T Consensus 96 ~~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 96 GGDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp CSCCCTTTCCSSCCGGGCCS
T ss_pred CCCcccEeCCccchhhhCCC
Confidence 36789999999999999986
No 304
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=57.18 E-value=13 Score=37.98 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=39.6
Q ss_pred ceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCH--HHHHHHHHHHHH
Q 040243 266 NFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQ--ESLEGAAAMVEK 340 (797)
Q Consensus 266 NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~--e~v~~A~~~I~~ 340 (797)
+++.+|||+++.-++.|.+.++|.|.|==.| .|+|.+.+. ..+..|+.+|+.
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG-----------------------~IWi~~~~~~~~~~~~ai~~~e~ 198 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVVGQNG-----------------------LIWVNGDRRKVSIAEEAIYLIEQ 198 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEECTTS-----------------------EEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEEECCc-----------------------EEEEeCCchhHHHHHHHHHHHHh
Confidence 7788999999999999999999999984334 789997655 234455555554
No 305
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=56.70 E-value=4.5 Score=27.78 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=16.9
Q ss_pred cchhcccCCCCCccccCCCC
Q 040243 370 EEYCRLCGEPGHRQYACPSR 389 (797)
Q Consensus 370 ~~~c~~cg~~gh~~~~cp~~ 389 (797)
...|-+||+.||..-+|+.-
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 34699999999999999854
No 306
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=54.26 E-value=6.6 Score=36.89 Aligned_cols=20 Identities=5% Similarity=0.096 Sum_probs=17.5
Q ss_pred hhHHHHHHHhCcEEEEeccc
Q 040243 277 NTQKRMERETGAKIVIRGKG 296 (797)
Q Consensus 277 ~t~K~le~eTgakI~IrGkG 296 (797)
..|++||++.|+++.+|..|
T Consensus 57 ~~I~~LE~~lG~~Lf~R~~~ 76 (135)
T 2ijl_A 57 LLVDALNHMFRQPVICSQRG 76 (135)
T ss_dssp HHHHHHHHHBSSCSEEECCC
T ss_pred HHHHHHHHHHCCeeEEecCC
Confidence 45899999999999999863
No 307
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=53.66 E-value=5.4 Score=26.73 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=16.9
Q ss_pred chhcccCCCCCccccCCCCC
Q 040243 371 EYCRLCGEPGHRQYACPSRT 390 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~~ 390 (797)
..|-+||+.||.+-+|+...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 35999999999999999764
No 308
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=53.21 E-value=2.4 Score=44.05 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHH-HHHhCcEEE
Q 040243 213 TREYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRM-ERETGAKIV 291 (797)
Q Consensus 213 tre~r~~~~le~er~~li~~~~~~~p~~~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~l-e~eTgakI~ 291 (797)
|+-.-++++|+.|--+|-+-+.++----+.|- ...||-|=. ..+++|-||..||++|..++.| ++-.|=||.
T Consensus 80 t~p~lvk~Lfe~EVPEI~dG~veI~~iaRe~G------~R~KiAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~gekID 152 (251)
T 2asb_A 80 THPNLVRKLFSLEVPEIADGSVEIVAVAREAG------HRSKIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGEKID 152 (251)
T ss_dssp SCHHHHHHHHHHHCHHHHTTSEEEEEEEEETT------TEEEEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEE
T ss_pred ccHHHHHHHHHhcchHhhcCeEEEEEEecCCC------ceeEEEEEc-CCCCCCHHHHHhCCCchHHHHHHHHhCCCeEE
Confidence 55567899999999998877655432222221 233555544 3478999999999999999999 778899999
Q ss_pred Eec
Q 040243 292 IRG 294 (797)
Q Consensus 292 IrG 294 (797)
|--
T Consensus 153 Ii~ 155 (251)
T 2asb_A 153 IID 155 (251)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 309
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=52.03 E-value=4.4 Score=27.43 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=10.7
Q ss_pred cceecCCCCCCcccCC
Q 040243 398 LCKICGDGGHPTIDCL 413 (797)
Q Consensus 398 ~Cr~CG~~gH~t~dCp 413 (797)
-|.+|..-||++.+|.
T Consensus 5 YCe~CE~FGH~t~~C~ 20 (26)
T 2hqh_E 5 YCEICEMFGHWATNCN 20 (26)
T ss_dssp EETTTTEESSCGGGCC
T ss_pred cchHHHHhCcccccCC
Confidence 4666666677777774
No 310
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=46.59 E-value=8.8 Score=25.54 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=7.5
Q ss_pred hhhcccCCCCCCC
Q 040243 106 RRRRRSRWDPPPS 118 (797)
Q Consensus 106 ~~~r~s~w~~~~~ 118 (797)
|++||..|+++++
T Consensus 7 rrkrkrewddddd 19 (28)
T 3ukx_C 7 RRKRKREWDDDDD 19 (28)
T ss_dssp CCCCCCCCCCSSS
T ss_pred HHHhhcccccCCC
Confidence 4456666766544
No 311
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=42.82 E-value=51 Score=29.62 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=31.9
Q ss_pred hhHHHHHHHh-CcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhc
Q 040243 277 NTQKRMERET-GAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLL 342 (797)
Q Consensus 277 ~t~K~le~eT-gakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll 342 (797)
.++..|+-+. +..|.||--|+ .--|+|+|+|.+.+.+++.++.+..+|
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT------------------EP~irvy~Ea~~~~~~~~~~~~~~~~i 93 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT------------------EDIVRVYAEANSQESADRLAYEVSLLV 93 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS------------------SSSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeCCC------------------ccEEEEEEEECCHHHHHHHHHHHHHHH
Confidence 4666666664 45888886552 223799999999877666655555544
No 312
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=42.58 E-value=7.3 Score=29.24 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=12.8
Q ss_pred cccceecCCCCCCcccCCC
Q 040243 396 DVLCKICGDGGHPTIDCLV 414 (797)
Q Consensus 396 ~v~Cr~CG~~gH~t~dCp~ 414 (797)
.--|.+|.-.|||+.+|.-
T Consensus 20 RpYCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCND 38 (42)
T ss_dssp -CEETTTTEESSCGGGCCT
T ss_pred CcccccccccCcccccCCc
Confidence 3457777777788888853
No 313
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=41.89 E-value=4.9 Score=43.97 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHh-CcEEE
Q 040243 213 TREYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERET-GAKIV 291 (797)
Q Consensus 213 tre~r~~~~le~er~~li~~~~~~~p~~~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eT-gakI~ 291 (797)
|...-++++|+.|--+|-+-+.++----+.|- ...||-|=. ..+++|-||..||++|..++.|.+|. |=||.
T Consensus 203 T~p~lv~~Lfe~EVPEI~dG~VeIk~iARepG------~RaKIAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~gekID 275 (366)
T 1k0r_A 203 THPNLVRKLFSLEVPEIADGSVEIVAVAREAG------HRSKIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGEKID 275 (366)
T ss_dssp SCHHHHHHHHHHHCHHHHTTSEEEEEEEEETT------TEEEEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEE
T ss_pred CChHHHHHHHHhcchhhcCCeEEEEEEEecCC------CeEEEEEEe-CCCCCCCcccccCCcchHHHHHHHHhCCCeEE
Confidence 44556888899988887776544322222221 133555543 35789999999999999999999999 99999
Q ss_pred Eec
Q 040243 292 IRG 294 (797)
Q Consensus 292 IrG 294 (797)
|-.
T Consensus 276 Ii~ 278 (366)
T 1k0r_A 276 IID 278 (366)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 314
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.98 E-value=17 Score=28.97 Aligned_cols=19 Identities=42% Similarity=0.978 Sum_probs=16.8
Q ss_pred chhcccCCCCCccccCCCC
Q 040243 371 EYCRLCGEPGHRQYACPSR 389 (797)
Q Consensus 371 ~~c~~cg~~gh~~~~cp~~ 389 (797)
..|-.||+.||-.-+||..
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGG
T ss_pred CccccCCCcCcccccCCCC
Confidence 4799999999999999954
No 315
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=38.83 E-value=8.2 Score=35.89 Aligned_cols=15 Identities=40% Similarity=0.939 Sum_probs=5.3
Q ss_pred hhhhhcccCCCCCCC
Q 040243 104 TSRRRRRSRWDPPPS 118 (797)
Q Consensus 104 ~~~~~r~s~w~~~~~ 118 (797)
.++|+|||||+...+
T Consensus 5 ~~~~~r~srW~~~~~ 19 (124)
T 4fxw_B 5 SSKKRKRSRWNQDTM 19 (124)
T ss_dssp -------CCBCCC--
T ss_pred ccccccccccCCCcc
Confidence 578899999997643
No 316
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=38.23 E-value=10 Score=25.72 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=17.8
Q ss_pred cchhcccCCCCCccccCCCCC
Q 040243 370 EEYCRLCGEPGHRQYACPSRT 390 (797)
Q Consensus 370 ~~~c~~cg~~gh~~~~cp~~~ 390 (797)
+.+|.+|..+||-.-+|.+..
T Consensus 3 RpYCe~CE~FGH~t~~C~d~e 23 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCNDDE 23 (26)
T ss_dssp -CEETTTTEESSCGGGCCTTC
T ss_pred CccchHHHHhCcccccCCccc
Confidence 458999999999999998765
No 317
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=37.87 E-value=18 Score=35.29 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=31.0
Q ss_pred ceEEEEEecCCCCCCCceeeeeeCCCchhHHHH-HHHh--------Cc---EEEEeccc
Q 040243 250 KLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRM-ERET--------GA---KIVIRGKG 296 (797)
Q Consensus 250 ~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~l-e~eT--------ga---kI~IrGkG 296 (797)
++...|.||. +++|.+|| .+++++ +++| |+ .|.|...|
T Consensus 6 ~l~~~i~I~P------~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g 55 (187)
T 1go3_E 6 EIADVVKVPP------EEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIG 55 (187)
T ss_dssp EEEEEEEECG------GGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEEC
T ss_pred EEEEEEEECH------HHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeecc
Confidence 4677888998 78899998 899995 9999 98 67777654
No 318
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=37.60 E-value=3.6 Score=42.70 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=32.6
Q ss_pred ceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHH---HHHHHHHHHH
Q 040243 266 NFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQES---LEGAAAMVEK 340 (797)
Q Consensus 266 NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~---v~~A~~~I~~ 340 (797)
+++.+|||+++..++.|.+.++|.|.|==.| .|+|.+.+... +..|+..|+.
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG-----------------------~IWi~~~~~~~~~~~~~aI~~~e~ 218 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFVANNG-----------------------RIWATCPSRFSEEILIEAIRKIEN 218 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEECTTS-----------------------EEEC-----CTTCCTHHHHTTTTT
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEECCc-----------------------EEEEeCCCHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999884334 68888776643 4455544443
No 319
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=37.51 E-value=23 Score=38.28 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=37.8
Q ss_pred HHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhcCC
Q 040243 279 QKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLLQP 344 (797)
Q Consensus 279 ~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~~ 344 (797)
..++-+.-+++|.+.|| ..+.|++-. ||.|.++|.+.+...++.+..+|..
T Consensus 291 ~~~~~~~p~~~~~~ygk-~~r~~rkmG--------------hv~~~~~~~~~~~~~~~~~~~~~~~ 341 (355)
T 3eth_A 291 NYDWLKLPLVHLHWYDK-EVRPGRKVG--------------HLNLTDSDTSRLTATLEALIPLLPP 341 (355)
T ss_dssp CGGGGGSTTCEEEECCC-CCCTTCEEE--------------EEEEECSCHHHHHHHHHHHGGGSCG
T ss_pred HHHHHhCCCCEEEEcCC-CCCCCCeeE--------------EEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 45555678999999999 677665432 9999999988776666666666654
No 320
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=35.32 E-value=18 Score=38.34 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=41.8
Q ss_pred ceeeeeeCCCchhHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHh
Q 040243 266 NFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKL 341 (797)
Q Consensus 266 NfiG~iiGPrG~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~l 341 (797)
+++-+|||+++.-++.|.+.++|.|.|==.| .|+|.+.+....-.+...|+++
T Consensus 219 ~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG-----------------------~IWI~~~~~~~~~~i~~aI~~~ 271 (289)
T 2nn6_G 219 GLIRKLLAPDCEIIQEVGKLYPLEIVFGMNG-----------------------RIWVKAKTIQQTLILANILEAC 271 (289)
T ss_dssp HHHHHHHCTTCSHHHHTTCSSSCCCEEETTT-----------------------EEEECCSSHHHHHHHHHHHHHT
T ss_pred HHhhhhhcCchhHHHHhcccCCeEEEEECCc-----------------------EEEEecCChhHHHHHHHHHHHh
Confidence 7788889999999999998999999876445 7999998887655555555554
No 321
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=34.75 E-value=44 Score=36.38 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=29.1
Q ss_pred HHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHH
Q 040243 279 QKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLE 332 (797)
Q Consensus 279 ~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~ 332 (797)
+.++-+.-|++|.+.||...+.|++-. ||.|.++|.+.+.
T Consensus 349 ~~~~~~~p~~~~~~ygk~~~~~~rkmG--------------hv~~~~~~~~~~~ 388 (403)
T 3k5i_A 349 AECALSIPNASIHLYSKGAAKPGRKMG--------------HITVTAPTMHEAE 388 (403)
T ss_dssp HHHHTTSTTEEEEECCCCSCCTTCEEE--------------EEEEECSSHHHHH
T ss_pred HHHHhcCCCCEEEECCCCCCCCCCeeE--------------EEEEEcCCHHHHH
Confidence 344445678999999997666665432 9999999987553
No 322
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=33.58 E-value=25 Score=34.47 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=38.8
Q ss_pred ceeeeeeCCCch-hHHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHH
Q 040243 266 NFIGLIIGPRGN-TQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEK 340 (797)
Q Consensus 266 NfiG~iiGPrG~-t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ 340 (797)
+++-+|||-++. .++.|.++++|.|.|==.| .|+|.+.+....-.+...|++
T Consensus 100 ~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG-----------------------~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 100 NFARQLLFNNDFPLLKVLAAHTKFEVAIGLNG-----------------------KIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp HHHHHHHHCTTCCHHHHHHTTCCCEEEEETTT-----------------------EEEEECSSHHHHHHHHHHHHH
T ss_pred HHhhHHhcCCCcchHHhhhccCCeEEEEECCc-----------------------EEEEecCCHHHHHHHHHHHHH
Confidence 788899995566 9999999999999885445 799999887654444344444
No 323
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=30.42 E-value=11 Score=36.11 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=19.1
Q ss_pred ceeeeeeCCCchhHHHHHHHhC
Q 040243 266 NFIGLIIGPRGNTQKRMERETG 287 (797)
Q Consensus 266 NfiG~iiGPrG~t~K~le~eTg 287 (797)
+=.|+|||-+|.||+.||--+.
T Consensus 42 ed~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 42 EDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp GGGTTTTCGGGHHHHHHHHHHH
T ss_pred CCcceEECCCCcchHHHHHHHH
Confidence 3469999999999999998874
No 324
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=26.91 E-value=14 Score=35.23 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=31.1
Q ss_pred eEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHhCcEEEEe
Q 040243 251 LQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIR 293 (797)
Q Consensus 251 ~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eTgakI~Ir 293 (797)
....|+|+. +=.++.||-+|.++|...+-||.+|.|.
T Consensus 103 ~~~~V~V~~------~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 103 KQVVIKVSE------DDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEECT------TTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEEEEEECh------HHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 345677787 3458999999999999999999999886
No 325
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=26.58 E-value=14 Score=39.97 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCceEEEEEecCCCCCCCceeeeeeCCCchhHHHHHHHh-CcEEE
Q 040243 213 TREYRARERLNKERQEIISQIIKRNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERET-GAKIV 291 (797)
Q Consensus 213 tre~r~~~~le~er~~li~~~~~~~p~~~pp~dy~p~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~le~eT-gakI~ 291 (797)
|+...++++++.|--+|.+-+.++----+.|- ...||-|=. ..+++|-+|..||++|..++.+.+|. |=||.
T Consensus 199 t~p~~lk~LfelEVPEI~dG~VeI~~iaRepG------~R~KiAV~s-~d~~iDpvGacvg~~G~ri~~i~~el~ge~Id 271 (344)
T 1hh2_P 199 RVPEFVIGLMKLEIPEVENGIVEIKAIAREPG------VRTKVAVAS-NDPNVDPIGACIGEGGSRIAAILKELKGEKLD 271 (344)
T ss_dssp SSHHHHHHHHHHHCHHHHHSSEEEEEEEEETT------TEEEEEEEE-SSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEE
T ss_pred eccHHHHHHHHhhcccceeeeEEEEEeecccc------cccceeEEc-cCCCccccceeeccCCcEeHHHHHHhCCCeee
Confidence 55567888999999988887654332222221 123555543 35789999999999999999999998 78887
Q ss_pred Eec
Q 040243 292 IRG 294 (797)
Q Consensus 292 IrG 294 (797)
|=-
T Consensus 272 ii~ 274 (344)
T 1hh2_P 272 VLK 274 (344)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
No 326
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=25.48 E-value=73 Score=34.88 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=35.4
Q ss_pred HHHHHHHhCcEEEEeccccccccccccccCCCCCCCCCCCceEEEEecCHHHHHHHHHHHHHhc
Q 040243 279 QKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEGAAAMVEKLL 342 (797)
Q Consensus 279 ~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~~~~e~LHv~I~a~~~e~v~~A~~~I~~ll 342 (797)
+.++-+.-|++|.+.||...+.|++-. ||.|.++|.+.+.+.++.+..+|
T Consensus 365 ~~~~l~~p~~~~~~ygk~~~~~~rkmG--------------hv~~~~~~~~~~~~~a~~~~~~l 414 (419)
T 4e4t_A 365 WDTVAAMPAAHLHLYGKEEARVGRKMG--------------HVNFTAEMRDDAVAAATACAQLL 414 (419)
T ss_dssp HHHHHTSTTEEEEECCCSCCCTTCEEE--------------EEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCCCCCCCCCceE--------------EEEEEeCCHHHHHHHHHHHHHhc
Confidence 566777889999999997666555322 99999999876654444444443
No 327
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.79 E-value=64 Score=21.31 Aligned_cols=19 Identities=37% Similarity=0.677 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 040243 167 EIQALNSRLLEISRMLQSG 185 (797)
Q Consensus 167 ~~~~~~~r~~ei~~~l~~~ 185 (797)
|...||.|+..+-++|++|
T Consensus 9 eledlqerlrklrkklrsg 27 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLRSG 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3445788888888888876
No 328
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=24.42 E-value=22 Score=26.76 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=10.3
Q ss_pred cceecCCCCCCcccCCC
Q 040243 398 LCKICGDGGHPTIDCLV 414 (797)
Q Consensus 398 ~Cr~CG~~gH~t~dCp~ 414 (797)
-|.+|--.|||+.+|..
T Consensus 22 YCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccceecccccccCCc
Confidence 46666556666666653
No 329
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=23.51 E-value=35 Score=25.95 Aligned_cols=22 Identities=27% Similarity=0.815 Sum_probs=17.3
Q ss_pred cccCC---CCCCCccccccceecCC
Q 040243 383 QYACP---SRTSTFKSDVLCKICGD 404 (797)
Q Consensus 383 ~~~cp---~~~~~~~~~v~Cr~CG~ 404 (797)
.|.|+ ....+|.....|..|+.
T Consensus 14 DW~C~~~~C~~~Nfa~R~~C~~C~~ 38 (45)
T 1n0z_A 14 DWICPDKKCGNVNFARRTSCDRCGR 38 (45)
T ss_dssp SCBCSSTTTCCBCCSSCSBCSSSCC
T ss_pred CcCCCCCCCCCEEccccccccccCC
Confidence 57887 44567889999999983
No 330
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=21.62 E-value=60 Score=31.90 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=17.5
Q ss_pred hhHHHHHHHhCcEEEEeccc
Q 040243 277 NTQKRMERETGAKIVIRGKG 296 (797)
Q Consensus 277 ~t~K~le~eTgakI~IrGkG 296 (797)
..||+||++.|+++.+|.+.
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~ 53 (291)
T 3szp_A 34 RRIQALEDSLNLRLLNRHAR 53 (291)
T ss_dssp HHHHHHHHHHTCCCEEEETT
T ss_pred HHHHHHHHHhCCceEeecCC
Confidence 46899999999999999654
No 331
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=21.24 E-value=60 Score=32.59 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=17.4
Q ss_pred hhHHHHHHHhCcEEEEeccc
Q 040243 277 NTQKRMERETGAKIVIRGKG 296 (797)
Q Consensus 277 ~t~K~le~eTgakI~IrGkG 296 (797)
..||+||++.|+++.+|...
T Consensus 43 ~~I~~LE~~lg~~Lf~R~~~ 62 (310)
T 2esn_A 43 HALGRLRQGLDDELFLRQGN 62 (310)
T ss_dssp HHHHHHHHHHTSCCEEEETT
T ss_pred HHHHHHHHhhCCcceeecCC
Confidence 46899999999999999643
No 332
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=20.61 E-value=30 Score=25.96 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=18.0
Q ss_pred cchhcccCCCCCccccCCCCC
Q 040243 370 EEYCRLCGEPGHRQYACPSRT 390 (797)
Q Consensus 370 ~~~c~~cg~~gh~~~~cp~~~ 390 (797)
+.+|.+|..+||-.-+|.+..
T Consensus 20 RpYCd~CEvFGH~t~~Cndde 40 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCNDDE 40 (42)
T ss_dssp -CEETTTTEESSCGGGCCTTC
T ss_pred CcccccccccCcccccCCccc
Confidence 358999999999999998765
No 333
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=20.53 E-value=39 Score=35.32 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=31.5
Q ss_pred CceEEEEEecCCCCCCCceeeeeeCCCchhHHHH--------HHHhCcEEEEe
Q 040243 249 PKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRM--------ERETGAKIVIR 293 (797)
Q Consensus 249 ~~~~~Ki~IP~~~~P~~NfiG~iiGPrG~t~K~l--------e~eTgakI~Ir 293 (797)
..+...||+.-+.+ .|.|||-+|..||+| |+.+||||.+.
T Consensus 238 ~~i~a~i~ve~~~~-----k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 238 LVIKGEIIVDRENL-----KPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEEESSGGG-----HHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEEccCCc-----ceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 45677888887643 489999999999976 67788888776
No 334
>2jpi_A Hypothetical protein; alpha-helix/beta-sheet, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Pseudomonas aeruginosa}
Probab=20.08 E-value=64 Score=29.52 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=44.0
Q ss_pred chhHHHHHHHhCcEEEEeccccccccccccccCCCCCC----CCCCCceEEEEecCHHHHHHHHHHHHHhcC
Q 040243 276 GNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDP----SENEDLHVLVEAETQESLEGAAAMVEKLLQ 343 (797)
Q Consensus 276 G~t~K~le~eTgakI~IrGkGS~k~g~~~~~~~~~~~~----~~~e~LHv~I~a~~~e~v~~A~~~I~~ll~ 343 (797)
...+|+|.+..+-||.+...+.. |.. ....+. ..++-|.|.|+|.+.+.|+.....|..-|.
T Consensus 36 sryl~qLc~H~~hK~~ve~d~~~--g~i----~fp~G~~~l~a~~~~L~i~v~A~d~e~L~~lk~VVa~HL~ 101 (118)
T 2jpi_A 36 ARYVNRLCKHWGHKFEVELTPER--GFI----DFGDSNCELLAHPDHVLMILNSPDEDSLAHMQNVVADHLQ 101 (118)
T ss_dssp HHHHHHHHHHTTTSSEEEECSSE--EEE----ECSSSCEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCceEcCCc--eEE----EeCCeEEEEEecCCeEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 46799999999999888765421 111 111111 346789999999999999988888877665
Done!