Query 040244
Match_columns 381
No_of_seqs 97 out of 110
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 10:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2s_A SHBG, sex hormone-bindi 62.1 28 0.00097 29.3 7.7 66 163-246 39-110 (170)
2 1yll_A PA5104, conserved hypot 59.4 1E+02 0.0035 27.8 11.8 83 156-257 88-173 (200)
3 1f5f_A SHBG, sex hormone-bindi 59.2 32 0.0011 29.6 7.7 66 163-246 51-122 (205)
4 2r16_A Neurexin-1-alpha; beta- 57.6 37 0.0013 28.7 7.7 67 163-245 40-110 (182)
5 1sop_A Mini-collagen; collagen 57.3 4.4 0.00015 26.7 1.4 7 111-117 3-9 (26)
6 1od3_A Putative xylanase; hydr 55.7 53 0.0018 28.4 8.5 120 154-282 12-155 (168)
7 1uxx_X Xylanase U; carbohydrat 49.2 71 0.0024 26.1 7.9 77 199-282 33-118 (133)
8 2hm3_A Nematocyst outer WALL a 47.0 5.4 0.00018 26.9 0.6 14 128-141 11-24 (31)
9 2axc_A Colicin E7; translocati 46.4 5.1 0.00017 38.5 0.5 32 262-293 148-179 (264)
10 1f9k_A Acidic lectin; legume l 38.6 32 0.0011 31.4 4.6 94 161-280 85-179 (238)
11 1f32_A Major pepsin inhibitor 37.7 13 0.00046 33.0 1.8 26 162-193 68-93 (149)
12 3bod_A Neurexin-1-alpha; neure 35.2 1.3E+02 0.0043 25.3 7.5 64 164-245 43-114 (178)
13 1wbf_A Protein (agglutinin); l 34.4 40 0.0014 31.0 4.5 94 161-280 85-179 (242)
14 2r0h_A CGL3 lectin; galectin-r 34.0 50 0.0017 29.2 4.9 74 164-246 19-120 (164)
15 3lay_A Zinc resistance-associa 33.8 8.7 0.0003 34.4 0.0 17 9-25 35-51 (175)
16 2h0b_A Neurexin-1-alpha; B-san 31.5 1.8E+02 0.006 24.1 7.8 64 163-246 41-113 (184)
17 1uy4_A Endo-1,4-beta-xylanase 31.4 2.3E+02 0.0077 23.6 8.4 75 199-282 50-133 (145)
18 3pve_A Agrin, AGRN protein; mR 29.8 1.6E+02 0.0056 24.7 7.4 65 162-244 46-118 (189)
19 1h30_A GAS6, growth-arrest-spe 29.0 99 0.0034 29.4 6.4 67 164-246 75-145 (422)
20 3ngg_A Omwaprin-A; venom prote 27.7 23 0.0008 25.3 1.4 11 152-162 40-50 (50)
21 1n47_A Isolectin B4; cancer an 27.5 66 0.0022 29.3 4.7 97 161-280 82-179 (233)
22 2r1b_A Neurexin-1-beta, neurex 25.8 2.2E+02 0.0074 25.0 7.6 11 234-244 109-119 (220)
23 4agr_A Galectin; sugar binding 24.6 38 0.0013 29.4 2.4 80 155-246 8-109 (146)
24 2jd4_A Laminin subunit alpha-1 24.3 2.5E+02 0.0087 25.8 8.1 20 163-182 56-75 (383)
25 3sh4_A LG3 peptide; actin disa 23.8 1.1E+02 0.0038 26.0 5.2 22 216-245 97-118 (195)
26 1gsl_A Griffonia simplicifolia 23.7 2.4E+02 0.0083 25.7 7.8 99 161-280 86-190 (243)
27 3ucp_A UNDA; beta-barrel, C-ty 23.5 18 0.00061 35.5 0.2 23 1-23 1-23 (874)
28 1dyk_A Laminin alpha 2 chain; 23.3 2.5E+02 0.0086 26.2 8.0 22 217-246 298-319 (394)
29 2r1d_A Neurexin-1-beta, neurex 23.3 2.1E+02 0.007 25.4 7.0 11 234-244 137-147 (226)
30 1sbf_A Soybean agglutinin; lec 22.4 92 0.0031 28.8 4.7 95 161-280 85-180 (253)
31 1dyk_A Laminin alpha 2 chain; 22.1 3.3E+02 0.011 25.3 8.6 44 163-206 70-119 (394)
32 2bqp_A Protein (PEA lectin); D 21.7 1.7E+02 0.0059 26.4 6.3 98 161-280 78-178 (234)
33 1a8d_A Tetanus neurotoxin; clo 20.3 5.9E+02 0.02 26.1 10.3 120 154-289 45-195 (452)
No 1
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=62.09 E-value=28 Score=29.26 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=40.0
Q ss_pred cCCceEEEeecCCCceEEeecCCceeeeEE-eee-----CCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCCCee
Q 040244 163 GDGVMFYFHGAKGGNFAIVSDDNLQINAHF-IGT-----RPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNVDAL 236 (381)
Q Consensus 163 GDG~~FYFHGkkd~dFciVSD~~LhINAHF-IG~-----r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~vD~l 236 (381)
-||.-||..+....||..+.=.+=++-.+| .|. +....--|..| |++.|... ..++
T Consensus 39 ~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~g~~~~~~~s~~~vnDG~W----------H~V~v~~~--------~~~~ 100 (170)
T 1d2s_A 39 PEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRW----------HQVEVKME--------GDSV 100 (170)
T ss_dssp SSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSCEEEEECSCCCCSSSC----------EEEEEEEE--------TTEE
T ss_pred CCEEEEEecCCCCCCEEEEEEeCCEEEEEEECCCceEEEeCCCccCCCCC----------EEEEEEEe--------CCEE
Confidence 588899887765678887653333333333 221 11122334445 88888766 4568
Q ss_pred EEEECCeeee
Q 040244 237 SIRLNGEAVD 246 (381)
Q Consensus 237 ~vt~dGe~v~ 246 (381)
.|++||++..
T Consensus 101 ~L~VD~~~~~ 110 (170)
T 1d2s_A 101 LLEVDGEEVL 110 (170)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCeeee
Confidence 9999998754
No 2
>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17
Probab=59.36 E-value=1e+02 Score=27.82 Aligned_cols=83 Identities=13% Similarity=0.188 Sum_probs=47.7
Q ss_pred CCC-eEEccCCceEEEeecCCCceEEeecCC-ceeeeEEeeeCCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCC
Q 040244 156 YDP-RFVGGDGVMFYFHGAKGGNFAIVSDDN-LQINAHFIGTRPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNV 233 (381)
Q Consensus 156 gDP-RFiGGDG~~FYFHGkkd~dFciVSD~~-LhINAHFIG~r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~v 233 (381)
++| +|-|..=+.=+..+.+-+||-|+..++ .+-..+.+-.. ...+| ....+...|=+- .
T Consensus 88 ~~p~~F~G~~~v~a~L~~G~~~DfNlM~rr~~~~~~v~~~~~~-----~~~~~------~~~~~~~~v~~l--------~ 148 (200)
T 1yll_A 88 RQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVE-----GELDW------HGTASTLLLFAQ--------Q 148 (200)
T ss_dssp TCCEEEETTSCEEEEESSSCEEEEEEEECTTTEEEEEEEEEEE-----EEEEE------EECCSEEEEEES--------S
T ss_pred CCcEEeCCCCcEEEEECCCCEEEEEEEEcCCccEEEEEEEecC-----CCeeE------cCCCCEEEEEEc--------c
Confidence 455 677777766667777777888777775 55555544210 11111 122333333332 3
Q ss_pred CeeEEEEC-CeeeecCCCCCceeEe
Q 040244 234 DALSIRLN-GEAVDIPTGGDAEWKT 257 (381)
Q Consensus 234 D~l~vt~d-Ge~v~ip~~~~a~W~s 257 (381)
+.+.|+.+ ++.+.|++++...++.
T Consensus 149 G~~~v~~~~~~~~~L~~~d~l~~~~ 173 (200)
T 1yll_A 149 DGVAISLQGQPRGQLAAHDCLCAEG 173 (200)
T ss_dssp SCEEEEETTEEEEEECTTCEEEEES
T ss_pred CcEEEEcCCCceeecCCCCEEEEeC
Confidence 55777777 4777888877777775
No 3
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=59.24 E-value=32 Score=29.56 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=35.6
Q ss_pred cCCceEEEeecCCCceEEeecCCceeeeEE-eee-----CCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCCCee
Q 040244 163 GDGVMFYFHGAKGGNFAIVSDDNLQINAHF-IGT-----RPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNVDAL 236 (381)
Q Consensus 163 GDG~~FYFHGkkd~dFciVSD~~LhINAHF-IG~-----r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~vD~l 236 (381)
-||.-||..+....||..|.=.+=++-.+| .|. +....--|..| |++.|... ..++
T Consensus 51 ~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~g~~~~~~~s~~~vnDG~W----------H~V~v~r~--------~~~~ 112 (205)
T 1f5f_A 51 PEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRW----------HQVEVKME--------GDSV 112 (205)
T ss_dssp SSEEEEEEEEETTTEEEEEEEETTEEEEEEESSSCEEEEECSCCCCSSSC----------EEEEEEEE--------TTEE
T ss_pred CCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCceEEEecCCccCCCCC----------EEEEEEEe--------CCEE
Confidence 467777776655567776653322222222 121 11112234444 77777655 3568
Q ss_pred EEEECCeeee
Q 040244 237 SIRLNGEAVD 246 (381)
Q Consensus 237 ~vt~dGe~v~ 246 (381)
.|++||+...
T Consensus 113 ~L~VD~~~~~ 122 (205)
T 1f5f_A 113 LLEVDGEEVL 122 (205)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCeeee
Confidence 8899988654
No 4
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=57.56 E-value=37 Score=28.72 Aligned_cols=67 Identities=10% Similarity=0.186 Sum_probs=37.2
Q ss_pred cCCceEEEeecCCCceEEeecCCceeeeEE-eeeCCCCCCCCceeEEEEEEeec---CeEEEEeeecccccCCCCCeeEE
Q 040244 163 GDGVMFYFHGAKGGNFAIVSDDNLQINAHF-IGTRPEGRTRDYTWVQALAVMFD---THTLVIAANRVMHWDDNVDALSI 238 (381)
Q Consensus 163 GDG~~FYFHGkkd~dFciVSD~~LhINAHF-IG~r~~g~~RDfTWIQALGI~F~---~H~l~i~A~k~a~Wd~~vD~l~v 238 (381)
-||.-||..+....||..+.=.+=++-.+| .|..+ +=|. .+..++ =|++.|... ..++.|
T Consensus 40 ~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~G~~~-------~~~~-~~~~lnDg~WH~V~v~r~--------~~~~~L 103 (182)
T 2r16_A 40 AYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGP-------ETLF-AGYNLNDNEWHTVRVVRR--------GKSLKL 103 (182)
T ss_dssp SSEEEEEEECSSSCCEEEEEEETTEEEEEEESSSCC-------EEEE-ECSSCCSSSCEEEEEEEE--------TTEEEE
T ss_pred CCEEEEEeCCCCCCCEEEEEEECCEEEEEEECCCCc-------eEEE-cCcccCCCCeEEEEEEEE--------CCEEEE
Confidence 477778776656678876654433444444 23211 0111 222221 377777666 457889
Q ss_pred EECCeee
Q 040244 239 RLNGEAV 245 (381)
Q Consensus 239 t~dGe~v 245 (381)
++|+++.
T Consensus 104 ~VD~~~~ 110 (182)
T 2r16_A 104 TVDDQQA 110 (182)
T ss_dssp EETTCCE
T ss_pred EECCcee
Confidence 9998754
No 5
>1sop_A Mini-collagen; collagen oxidative refolding, structural protein; NMR {Synthetic} SCOP: g.71.1.1 PDB: 1sp7_A
Probab=57.30 E-value=4.4 Score=26.67 Aligned_cols=7 Identities=43% Similarity=1.317 Sum_probs=4.4
Q ss_pred CCCCCCC
Q 040244 111 CPAECPG 117 (381)
Q Consensus 111 Cp~~Cp~ 117 (381)
||.-|+.
T Consensus 3 CP~vC~t 9 (26)
T 1sop_A 3 CPPVCVA 9 (26)
T ss_dssp CCTTTTT
T ss_pred CCccccc
Confidence 6666665
No 6
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module, beta-sandwich, laminaribiose; HET: BGC; 1.0A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A* 1o8s_A* 1o8p_A
Probab=55.70 E-value=53 Score=28.38 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=50.7
Q ss_pred ccCCCeEEccCCceEEEeecCC---------------CceEEeecCCceeeeEEeeeCCCCCCCCceeEEEEEEeec--C
Q 040244 154 LCYDPRFVGGDGVMFYFHGAKG---------------GNFAIVSDDNLQINAHFIGTRPEGRTRDYTWVQALAVMFD--T 216 (381)
Q Consensus 154 ~CgDPRFiGGDG~~FYFHGkkd---------------~dFciVSD~~LhINAHFIG~r~~g~~RDfTWIQALGI~F~--~ 216 (381)
+-.-||++..+...|+..|..- ++|...+...+.....--|-.+-+..++-.||.==.|-|. .
T Consensus 12 ~~~~~~~~~~~s~~~~v~G~~~~~~~~~~~~~~~ieAE~y~~~~Gv~~~~~~~~~gG~~Vg~i~~G~wl~y~~vdfg~G~ 91 (168)
T 1od3_A 12 SGLVPRGSHMASTPANVNSGPTSPVGGTRSAFSNIQAEDYDSSYGPNLQIFSLPGGGSAIGYIENGYSTTYKNIDFGDGA 91 (168)
T ss_dssp ------------------------CCCCEETTSCEETTCCSEEECTTCEEEECTTSSEEEECCCTTCEEEEEEEECTTCE
T ss_pred CCceeeeeeeeeEEEEECCcccCCCcCccCccceEeeeEehhcCCcEEEEeecCCCCcEEeeecCCCEEEEEeEEeCCCc
Confidence 3456899999999999888432 3444444444432211001111245577899887788884 4
Q ss_pred eEEEEeeecccccCCCCCeeEEEEC---Cee---eecCC-CCCceeEeCCCCCCeEEEEecCCCeEEEEECCe
Q 040244 217 HTLVIAANRVMHWDDNVDALSIRLN---GEA---VDIPT-GGDAEWKTNADERQVLVERTDDTNNVRVKVAGL 282 (381)
Q Consensus 217 H~l~i~A~k~a~Wd~~vD~l~vt~d---Ge~---v~ip~-~~~a~W~s~~~~~~l~V~Rt~~~N~V~V~l~g~ 282 (381)
.+|.+.+. ... .-.++|.+| |+. +.+|. +.-..|+.- ...|+..+-...|.+.+.|-
T Consensus 92 ~~~~~rva---s~~--~G~ievrlds~~G~~lgt~~vp~Tggw~~w~tv----t~~v~~~~G~hdLylvf~G~ 155 (168)
T 1od3_A 92 TSVTARVA---TQN--ATTIQVRLGSPSGTLLGTIYVGSTGSFDTYRDV----SATISNTAGVKDIVLVFSGP 155 (168)
T ss_dssp EEEEEEEE---CSS--CEEEEEEESSTTSCEEEEEEECCCSSTTCCEEE----EEEEEEECSEEEEEEEESSC
T ss_pred EEEEEEEE---cCC--CcEEEEEECCCCCcEEEEEEeCCCCCCcccEEE----EEEEcCCCcEEEEEEEEECC
Confidence 55555443 222 358999998 454 45774 334478752 13444444445555555554
No 7
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A*
Probab=49.19 E-value=71 Score=26.08 Aligned_cols=77 Identities=12% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCCCCceeEEEEEEeec--CeEEEEeeecccccCCCCCeeEEEEC---Ceee---ecCCCC-CceeEeCCCCCCeEEEEe
Q 040244 199 GRTRDYTWVQALAVMFD--THTLVIAANRVMHWDDNVDALSIRLN---GEAV---DIPTGG-DAEWKTNADERQVLVERT 269 (381)
Q Consensus 199 g~~RDfTWIQALGI~F~--~H~l~i~A~k~a~Wd~~vD~l~vt~d---Ge~v---~ip~~~-~a~W~s~~~~~~l~V~Rt 269 (381)
+..++-.||.-=.|-|. .++|.+.+ +......-.++|.+| |+.| .+|... -..|+.- ...|+..
T Consensus 33 ~~i~~G~wl~y~~vd~~~G~~~~~~rv---as~~~~gg~ievr~ds~~G~~~gt~~v~~Tggw~~~~~~----~~~v~~~ 105 (133)
T 1uxx_X 33 GYIESGDYLVFNKINFGNGANSFKARV---ASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWNNYEEK----SCSITNT 105 (133)
T ss_dssp ECCCTTCEEEEEEEECCSCEEEEEEEE---EECCSSCEEEEEEESSTTSEEEEEEEECCCSEEEEEEEE----EEEEEEE
T ss_pred EeecCCCEEEEEEEEcCCCcEEEEEEE---EeCCCCCcEEEEEECCCCCcEEEEEEeCCCCCCceEEEE----EEEEccC
Confidence 45577899987788884 44454443 333222348999998 5544 566432 2356641 1334444
Q ss_pred cCCCeEEEEECCe
Q 040244 270 DDTNNVRVKVAGL 282 (381)
Q Consensus 270 ~~~N~V~V~l~g~ 282 (381)
+-...|.+.+.|-
T Consensus 106 ~G~h~l~l~f~G~ 118 (133)
T 1uxx_X 106 TGQHDLYLVFSGP 118 (133)
T ss_dssp CSEEEEEEEESSC
T ss_pred CcEEEEEEEEECC
Confidence 4445555555553
No 8
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=46.99 E-value=5.4 Score=26.86 Aligned_cols=14 Identities=36% Similarity=1.111 Sum_probs=9.2
Q ss_pred ceeecCCCcccccc
Q 040244 128 GCFVNCGSKCEATC 141 (381)
Q Consensus 128 ~C~v~C~~~C~~~C 141 (381)
+|.-||...|++-|
T Consensus 11 gcsgdcypeckpgc 24 (31)
T 2hm3_A 11 GCSGDCYPECKPGC 24 (31)
T ss_dssp TCCGGGTTTTCHHH
T ss_pred CcCccccCccCCCc
Confidence 45556666777776
No 9
>2axc_A Colicin E7; translocation domain, hydrolase; 1.70A {Escherichia coli str}
Probab=46.38 E-value=5.1 Score=38.47 Aligned_cols=32 Identities=13% Similarity=0.038 Sum_probs=25.1
Q ss_pred CCeEEEEecCCCeEEEEECCeEEEEEEEeeCc
Q 040244 262 RQVLVERTDDTNNVRVKVAGLVELHIKVSPIG 293 (381)
Q Consensus 262 ~~l~V~Rt~~~N~V~V~l~g~~~I~~~VVPit 293 (381)
|=|.-.+|+..+-....+.|+-.|.++|.+-+
T Consensus 148 PVVkA~pT~rPgVytA~vPG~p~~~I~V~~t~ 179 (264)
T 2axc_A 148 PVVNAKPTRTPGVFHASFPGVPSLTVSTVKGL 179 (264)
T ss_dssp EEEECEECSSTTEEEEEETTEEEEEEEECTTS
T ss_pred ceEeeeecCCCCeEEeccCCCCCEEEEcCCCC
Confidence 44555888878878888999999999997643
No 10
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A*
Probab=38.64 E-value=32 Score=31.41 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=56.6
Q ss_pred EccCCceEEEeecCCCceEEeecCCceeeeEEeeeCCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCCCeeEEEE
Q 040244 161 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNVDALSIRL 240 (381)
Q Consensus 161 iGGDG~~FYFHGkkd~dFciVSD~~LhINAHFIG~r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~vD~l~vt~ 240 (381)
.+|||..|-+.--+.. + + -...++|.-+.. + . -+.++|-||+++= .||-+.+|+-|-+
T Consensus 85 ~~gdGlAF~l~p~~~~-----~--~--~~g~~LGl~n~~---~-~-~~~vAVEFDT~~N--------~~Dp~~nHVgIdv 142 (238)
T 1f9k_A 85 EPADGLTFFMVPPNSP-----Q--G--EDGGNLGVFKPP---E-G-DNAFAVEFDTFQN--------TWDPQVPHIGIDV 142 (238)
T ss_dssp CCCEEEEEEEECTTCC-----C--C--CSGGGTTTCCSS---C-C-SCCEEEEEECSCC--------TTCCSSSEEEEEE
T ss_pred CCCCcEEEEEccCCCC-----C--C--CCCCcccccccC---C-C-CcEEEEEEecccC--------CCCCCCCeEEEec
Confidence 4799999888754321 1 1 123456765432 2 2 6688899987632 1888889999999
Q ss_pred CCeeeecCCCCCceeEe-CCCCCCeEEEEecCCCeEEEEEC
Q 040244 241 NGEAVDIPTGGDAEWKT-NADERQVLVERTDDTNNVRVKVA 280 (381)
Q Consensus 241 dGe~v~ip~~~~a~W~s-~~~~~~l~V~Rt~~~N~V~V~l~ 280 (381)
|+.. .+ ..+.|.- .+..-.+.|+..+.++.+.|+|.
T Consensus 143 ns~~-S~---~s~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~ 179 (238)
T 1f9k_A 143 NSIV-SS---KTLHFQLENGGVANVVIKYDSPTKILNVVLA 179 (238)
T ss_dssp SSSS-CS---EEEECCCCTTCCEEEEEEEETTTTEEEEEEE
T ss_pred CCcc-cc---ceEeecccCCCEEEEEEEEeCCCCEEEEEEe
Confidence 9831 11 1122321 11122477788877777777773
No 11
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=37.74 E-value=13 Score=32.96 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.8
Q ss_pred ccCCceEEEeecCCCceEEeecCCceeeeEEe
Q 040244 162 GGDGVMFYFHGAKGGNFAIVSDDNLQINAHFI 193 (381)
Q Consensus 162 GGDG~~FYFHGkkd~dFciVSD~~LhINAHFI 193 (381)
|.|-++|||-| |+|.|.-|-||.+|+
T Consensus 68 ~~Dttqy~FdG------CvVqnNKlY~gg~~~ 93 (149)
T 1f32_A 68 PQDMKMFNFVG------CSVLGNKLFIDQKYV 93 (149)
T ss_dssp CTTCEEEEETT------EEEETTEEEETTEEE
T ss_pred cccceEEEEee------eEEEcCEEEECCEee
Confidence 56889999977 999999999999998
No 12
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=35.15 E-value=1.3e+02 Score=25.26 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=37.2
Q ss_pred CCceEEEeec-CCCceEEeecCCceeeeEE-eeeC------CCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCCCe
Q 040244 164 DGVMFYFHGA-KGGNFAIVSDDNLQINAHF-IGTR------PEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNVDA 235 (381)
Q Consensus 164 DG~~FYFHGk-kd~dFciVSD~~LhINAHF-IG~r------~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~vD~ 235 (381)
||.-||-.+. ...||..+.=.+=++-.+| .|.. ....--|..| |++.|.-. ...
T Consensus 43 ~GlLl~~~~~~~~~dfi~l~L~~G~l~~~~~~G~~~~~~~~~~~~vnDg~W----------H~V~v~r~--------~~~ 104 (178)
T 3bod_A 43 EAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKY----------HVVRFTRS--------GGN 104 (178)
T ss_dssp SEEEEEEEESSSSCCEEEEEEETTEEEEEEESSSCCEEEECCSSCCCSSSC----------EEEEEEEE--------TTE
T ss_pred CEEEEEEcCCCCCCCEEEEEEECCEEEEEEECCCCceEEecCCcCccCCCe----------EEEEEEEe--------CCE
Confidence 6777776543 3567877665554444444 2321 1223345555 77777655 456
Q ss_pred eEEEECCeee
Q 040244 236 LSIRLNGEAV 245 (381)
Q Consensus 236 l~vt~dGe~v 245 (381)
+.|++|+.+.
T Consensus 105 ~~L~VD~~~~ 114 (178)
T 3bod_A 105 ATLQVDSWPV 114 (178)
T ss_dssp EEEEETTSCC
T ss_pred EEEEEeCCce
Confidence 7888888754
No 13
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A*
Probab=34.36 E-value=40 Score=30.96 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=55.1
Q ss_pred EccCCceEEEeecCCCceEEeecCCceeeeEEeeeCCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCCCeeEEEE
Q 040244 161 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNVDALSIRL 240 (381)
Q Consensus 161 iGGDG~~FYFHGkkd~dFciVSD~~LhINAHFIG~r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~vD~l~vt~ 240 (381)
.+|||..|-+.--+.. +. -...++|.-+.. .=-+.++|.||+++= .||-+.+|+-|-+
T Consensus 85 ~~gdGlAF~l~p~~~~-------~~--~~g~~LGl~n~~-----~~~~~vAVEFDT~~N--------~~Dp~~nHVGIdv 142 (242)
T 1wbf_A 85 HPADGLVFFIAPPNTQ-------TG--EGGGYFGIYNPL-----SPYPFVAVEFDTFRN--------TWDPQIPHIGIDV 142 (242)
T ss_dssp CCCEEEEEEEECSSCC-------CC--CCGGGTTTCCTT-----SCCCCEEEEEECSCC--------TTCCSSSEEEEEE
T ss_pred CCCCcEEEEEecCCCC-------CC--CCCCccccccCC-----CcCcEEEEEeccccC--------CCCCCCCeEEEEC
Confidence 4799999988764321 11 123456654432 113467888887631 1998899999999
Q ss_pred CCeeeecCCCCCceeEe-CCCCCCeEEEEecCCCeEEEEEC
Q 040244 241 NGEAVDIPTGGDAEWKT-NADERQVLVERTDDTNNVRVKVA 280 (381)
Q Consensus 241 dGe~v~ip~~~~a~W~s-~~~~~~l~V~Rt~~~N~V~V~l~ 280 (381)
|+.. .+ ..+.|.- .+..-.+.|+..+.++.+.|+|.
T Consensus 143 Ns~~-S~---~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~ 179 (242)
T 1wbf_A 143 NSVI-ST---KTVPFTLDNGGIANVVIKYDASTKILHVVLV 179 (242)
T ss_dssp SSSS-CS---EEEECCCCTTSCEEEEEEEETTTTEEEEEEE
T ss_pred CCcc-cc---ceeeeEecCCCEEEEEEEEeCCCCEEEEEEc
Confidence 9831 11 1122321 11122477788887777777773
No 14
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose, chitooligosaccharides; HET: CTO; 1.90A {Coprinus cinereus} PDB: 2r0f_A*
Probab=33.98 E-value=50 Score=29.24 Aligned_cols=74 Identities=16% Similarity=0.055 Sum_probs=45.6
Q ss_pred CCceEEEeecC-------------CCceEE-----eecCCceeeeEEe---eeCCCCCCCCceeEEEE----EEee---c
Q 040244 164 DGVMFYFHGAK-------------GGNFAI-----VSDDNLQINAHFI---GTRPEGRTRDYTWVQAL----AVMF---D 215 (381)
Q Consensus 164 DG~~FYFHGkk-------------d~dFci-----VSD~~LhINAHFI---G~r~~g~~RDfTWIQAL----GI~F---~ 215 (381)
+|.+..++|.. ...|.| -+|.-||||.+|- =.||. +.-+..|-+.= ...| .
T Consensus 19 ~G~~i~I~G~v~~~~~~~~~~~~~a~rF~INl~~g~~DIalHfNPRF~e~~IV~NS-~~~~g~WG~EER~~~~~PF~~G~ 97 (164)
T 2r0h_A 19 DNGIIVFQSDKLDLEPSPNLGPTGIDNTNVNLINAKGDVLLHIGIRRRENAFVFNS-IPYGESRGPEERIPLEGTFGDRR 97 (164)
T ss_dssp TTCEEEEECSCCCCSCCSCCCTTSSCCEEEEEEETTSCEEEEEEEETTTTEEEEEE-ECTTSCCCCCEEEECTTTSCSCS
T ss_pred CCCEEEEEEEecCcccccccCCCCCCeEEEEeeeCCCCEEEEEeeccCCCEEEECC-cccCCeeChhhcccCCCCCCCCC
Confidence 57778888863 135666 2477899999983 12432 21355684322 2345 2
Q ss_pred CeEEEEeeecccccCCCCCeeEEEECCeeee
Q 040244 216 THTLVIAANRVMHWDDNVDALSIRLNGEAVD 246 (381)
Q Consensus 216 ~H~l~i~A~k~a~Wd~~vD~l~vt~dGe~v~ 246 (381)
.-.|.|-.+ .|+.+|.+||..+.
T Consensus 98 ~F~i~I~~~--------~~~F~V~vNg~~~~ 120 (164)
T 2r0h_A 98 DPSITIFDH--------PDRYQIMIDYKTVY 120 (164)
T ss_dssp SCEEEEEEC--------SSEEEEEETTEEEE
T ss_pred cEEEEEEEe--------CCEEEEEECCEeEE
Confidence 335666666 78999999988764
No 15
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.82 E-value=8.7 Score=34.37 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040244 9 LVAFFVFLMGTEAVLAA 25 (381)
Q Consensus 9 lva~~~ll~~~~~~~~~ 25 (381)
+|||.+|+|++++|.|.
T Consensus 35 ~~al~~l~l~s~~A~A~ 51 (175)
T 3lay_A 35 LIALSLLALSSGAAFAG 51 (175)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHhHHHHhc
Confidence 66667677777788887
No 16
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=31.52 E-value=1.8e+02 Score=24.14 Aligned_cols=64 Identities=20% Similarity=0.469 Sum_probs=36.1
Q ss_pred cCCceEEEeecCCCceEEeecCCceeeeEE-eeeC--------CCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCC
Q 040244 163 GDGVMFYFHGAKGGNFAIVSDDNLQINAHF-IGTR--------PEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNV 233 (381)
Q Consensus 163 GDG~~FYFHGkkd~dFciVSD~~LhINAHF-IG~r--------~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~v 233 (381)
-||.-||- | ...||..+.=.+=++-.+| .|.. ....--|..| |++.|... .
T Consensus 41 ~~GlLl~~-g-~~~d~l~l~L~~G~l~~~~~~G~g~~~~~~~~~~~~l~Dg~W----------H~V~v~r~--------~ 100 (184)
T 2h0b_A 41 RNGLMLHT-G-KSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAW----------HDVKVTRN--------L 100 (184)
T ss_dssp SCEEEEEE-C-CTTEEEEEEEETTEEEEEEEESSCEEEEEECCSSSCSSSSSC----------EEEEEEEE--------T
T ss_pred CCEEEEEe-C-CCCCEEEEEEECCEEEEEEECCCCeEEEEEecCCcccCCCCe----------EEEEEEEe--------C
Confidence 46777765 4 3567777665444444444 2321 1122335555 77777654 4
Q ss_pred CeeEEEECCeeee
Q 040244 234 DALSIRLNGEAVD 246 (381)
Q Consensus 234 D~l~vt~dGe~v~ 246 (381)
.++.|++||....
T Consensus 101 ~~~~L~VD~~~~~ 113 (184)
T 2h0b_A 101 RQVTISVDGILTT 113 (184)
T ss_dssp TEEEEEETTTEEE
T ss_pred CEEEEEEcCceee
Confidence 5688888887643
No 17
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=31.44 E-value=2.3e+02 Score=23.61 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=43.1
Q ss_pred CCCCCceeEEEEEEeec--CeEEEEeeecccccCCCCCeeEEEEC---Ceee---ecCC-CCCceeEeCCCCCCeEEEEe
Q 040244 199 GRTRDYTWVQALAVMFD--THTLVIAANRVMHWDDNVDALSIRLN---GEAV---DIPT-GGDAEWKTNADERQVLVERT 269 (381)
Q Consensus 199 g~~RDfTWIQALGI~F~--~H~l~i~A~k~a~Wd~~vD~l~vt~d---Ge~v---~ip~-~~~a~W~s~~~~~~l~V~Rt 269 (381)
+..++-.||.==.|-|. ..+|.+.+. ... .-.++|.+| |+.| .||. +.-..|+.- ...|...
T Consensus 50 g~i~~G~wi~y~~vdf~~G~~~~~~rva---s~~--gg~ievrlds~~G~~lgt~~v~~Tggw~~w~tv----~~~v~~~ 120 (145)
T 1uy4_A 50 GYIENGNTVTYSNIDFGSGATGFSATVA---TEV--NTSIQIRSDSPTGTLLGTLYVSSTGSWNTYNTV----STNISKI 120 (145)
T ss_dssp ESCCTTCEEEEEEEECTTCEEEEEEEEE---CSS--CEEEEEEESSTTSCEEEEEEECCCSSTTCCEEE----EEEEEEE
T ss_pred EeeCCCCEEEEEEEEcCCCCEEEEEEEE---eCC--CcEEEEEECCCCCcEEEEEEecCCCCCcccEEE----EEEecCC
Confidence 34567899987788884 444444432 222 358999998 5544 5774 444578752 1334444
Q ss_pred cCCCeEEEEECCe
Q 040244 270 DDTNNVRVKVAGL 282 (381)
Q Consensus 270 ~~~N~V~V~l~g~ 282 (381)
+-...|.+.+.|-
T Consensus 121 ~G~h~lyl~f~g~ 133 (145)
T 1uy4_A 121 TGVHDIVLVFSGP 133 (145)
T ss_dssp CSEEEEEEEESSC
T ss_pred CceEEEEEEEeCC
Confidence 4344555555553
No 18
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=29.78 E-value=1.6e+02 Score=24.73 Aligned_cols=65 Identities=17% Similarity=0.349 Sum_probs=35.4
Q ss_pred ccCCceEEEeec--CCCceEEeecCCceeeeEE-eee-----CCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCC
Q 040244 162 GGDGVMFYFHGA--KGGNFAIVSDDNLQINAHF-IGT-----RPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNV 233 (381)
Q Consensus 162 GGDG~~FYFHGk--kd~dFciVSD~~LhINAHF-IG~-----r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~v 233 (381)
--||.-||-.++ ...||..+.=.+=++-.+| .|. +.+..--|..| |++.|... .
T Consensus 46 ~~~GlLl~~~~~~~~~~d~l~l~L~~G~l~~~~~~G~g~~~l~s~~~l~Dg~W----------H~V~v~r~--------~ 107 (189)
T 3pve_A 46 GPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDLGKGAAIIRSKEPIALGTW----------VRVFLERN--------G 107 (189)
T ss_dssp SSCEEEEEEESCC-CCSCEEEEEEETTEEEEEEESSSCEEEEECSSCCCTTSE----------EEEEEEEE--------T
T ss_pred CCCEEEEEecCCCCCCCCeEEEEEECCEEEEEEecCCCCEEEEcCcccCCCCE----------EEEEEEEe--------C
Confidence 457777777654 3356765532222332333 221 12233445555 77777655 4
Q ss_pred CeeEEEECCee
Q 040244 234 DALSIRLNGEA 244 (381)
Q Consensus 234 D~l~vt~dGe~ 244 (381)
.++.|++||.+
T Consensus 108 ~~~~L~VD~~~ 118 (189)
T 3pve_A 108 RKGALQVGDGP 118 (189)
T ss_dssp TEEEEEETTSC
T ss_pred CEEEEEECCce
Confidence 56888899875
No 19
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=28.99 E-value=99 Score=29.39 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCceEEEeecCCCceEEeecCCceeeeEE-eeeCCCCCCCCceeEEEEEEeec---CeEEEEeeecccccCCCCCeeEEE
Q 040244 164 DGVMFYFHGAKGGNFAIVSDDNLQINAHF-IGTRPEGRTRDYTWVQALAVMFD---THTLVIAANRVMHWDDNVDALSIR 239 (381)
Q Consensus 164 DG~~FYFHGkkd~dFciVSD~~LhINAHF-IG~r~~g~~RDfTWIQALGI~F~---~H~l~i~A~k~a~Wd~~vD~l~vt 239 (381)
||.-||--++.+.||..+.=.+=++-.+| .|.. -+.+ ..+..++ =|++.|.-. ..++.|+
T Consensus 75 ~GlLly~~~~~~~df~~l~L~~G~l~~~~~~g~~-------~~~~-~~~~~~nDg~WH~V~v~r~--------~~~~~L~ 138 (422)
T 1h30_A 75 EGILLFAGGHQDSTWIVLALRAGRLELQLRYNGV-------GRVT-SSGPVINHGMWQTISVEEL--------ARNLVIK 138 (422)
T ss_dssp SEEEEEEESCTTSEEEEEEEETTEEEEEEEETTE-------EEEE-EEEEECCSSCCEEEEEEEC--------SSEEEEE
T ss_pred CeEEEEECCCCCCcEEEEEEECCEEEEEEECCCC-------cEEE-ecCceecCCCCEEEEEEEc--------CCEEEEE
Confidence 56666555545567776665444444444 2220 0111 2233332 255555444 3567788
Q ss_pred ECCeeee
Q 040244 240 LNGEAVD 246 (381)
Q Consensus 240 ~dGe~v~ 246 (381)
+||+.+.
T Consensus 139 VD~~~~~ 145 (422)
T 1h30_A 139 VNRDAVM 145 (422)
T ss_dssp ETTEEEE
T ss_pred ECCeeeE
Confidence 8887654
No 20
>3ngg_A Omwaprin-A; venom protein, racemic protein crystallography, direct metho antibiotic; 1.33A {Oxyuranus microlepidotus}
Probab=27.72 E-value=23 Score=25.33 Aligned_cols=11 Identities=55% Similarity=1.005 Sum_probs=8.7
Q ss_pred CCccCCCeEEc
Q 040244 152 GSLCYDPRFVG 162 (381)
Q Consensus 152 Gs~CgDPRFiG 162 (381)
|..|-+|.++|
T Consensus 40 G~~C~~P~~~~ 50 (50)
T 3ngg_A 40 KDECRDPIFVG 50 (50)
T ss_dssp CEEEECCBCCC
T ss_pred CCccCCcccCC
Confidence 67888888876
No 21
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1
Probab=27.51 E-value=66 Score=29.27 Aligned_cols=97 Identities=20% Similarity=0.367 Sum_probs=56.3
Q ss_pred EccCCceEEEeecCCCceEEeecCCceeeeEEeeeCCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCCCeeEEEE
Q 040244 161 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNVDALSIRL 240 (381)
Q Consensus 161 iGGDG~~FYFHGkkd~dFciVSD~~LhINAHFIG~r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~vD~l~vt~ 240 (381)
.+|||..|.+.--+.. + . -...++|.-+.. +-+-. -+.++|.||+++= .||-+.+|+-|-+
T Consensus 82 ~~gdGlAF~l~p~~~~-----p--~--~~g~~LGl~n~~-~~~~~-n~~vAVEFDT~~N--------~~Dp~~nHvGIdv 142 (233)
T 1n47_A 82 AVADGLAFFLAPPDTQ-----P--Q--ARGGFLGLFADR-AHDAS-YQTVAVEFDTYSN--------AWDPNYTHIGIDT 142 (233)
T ss_dssp SCCEEEEEEEECTTCC-----C--C--CCGGGTTTCSSS-SCCGG-GCCEEEEEECSCC--------TTSCSSCEEEEEE
T ss_pred CCCCcEEEEEecCCCC-----C--C--CCCCcccccccC-CCCcc-CceEEEEeccccC--------CCCCCCCcEEEcc
Confidence 4799999988764432 1 1 123456654321 11211 4567888887642 1998899999999
Q ss_pred CCeeeecCCCCCceeEe-CCCCCCeEEEEecCCCeEEEEEC
Q 040244 241 NGEAVDIPTGGDAEWKT-NADERQVLVERTDDTNNVRVKVA 280 (381)
Q Consensus 241 dGe~v~ip~~~~a~W~s-~~~~~~l~V~Rt~~~N~V~V~l~ 280 (381)
|+.. .+ ..+.|.- .+..-.+.|+..+.++.+.|+|.
T Consensus 143 ns~~-S~---~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~ 179 (233)
T 1n47_A 143 NGIE-SK---KTTPFDMVYGEKANIVITYQASTKALAASLV 179 (233)
T ss_dssp SSSS-CS---EEEECCCCTTSCEEEEEEEETTTTEEEEEEE
T ss_pred CCcc-cc---ccccccccCCCEEEEEEEEeCCCCEEEEEEe
Confidence 9731 11 1122321 11122477788887788887773
No 22
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=25.85 E-value=2.2e+02 Score=24.96 Aligned_cols=11 Identities=0% Similarity=0.148 Sum_probs=6.1
Q ss_pred CeeEEEECCee
Q 040244 234 DALSIRLNGEA 244 (381)
Q Consensus 234 D~l~vt~dGe~ 244 (381)
..+.|++|+.+
T Consensus 109 ~~~~L~VD~~~ 119 (220)
T 2r1b_A 109 GNATLQVDSWP 119 (220)
T ss_dssp TEEEEEETTSC
T ss_pred CEEEEEECCcc
Confidence 34566666653
No 23
>4agr_A Galectin; sugar binding protein; 2.10A {Cinachyrella} PDB: 4agg_A 4agv_A
Probab=24.55 E-value=38 Score=29.37 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=44.6
Q ss_pred cCCCeEEccCCceEEEeecCCC-ceEE-----eecCCceeeeEEe-------eeCCCCCCCCceeEEEE---EEeec---
Q 040244 155 CYDPRFVGGDGVMFYFHGAKGG-NFAI-----VSDDNLQINAHFI-------GTRPEGRTRDYTWVQAL---AVMFD--- 215 (381)
Q Consensus 155 CgDPRFiGGDG~~FYFHGkkd~-dFci-----VSD~~LhINAHFI-------G~r~~g~~RDfTWIQAL---GI~F~--- 215 (381)
-.||-..|+.|+. +|.+|. .|+| -+|--||+|-+|= =.||. +-.+..|=+.- ++-|.
T Consensus 8 ~~~~~~~g~~~vv---~~~P~~~rf~inl~~~~~DIAlHfNPRF~~~~d~~~IV~NS-~~~~G~WG~EER~~~~PF~~~g 83 (146)
T 4agr_A 8 KVDPMKSGGLGVV---YRSPDKGRVSLYLYNDGEDILLVVDARFDWRGEQNVLVLNS-KFAGGEWGPEVRPEGFPFPCCG 83 (146)
T ss_dssp EEEEESSSEEEEE---EECCSSEEEEEEEECTTCCEEEEEEEEEEETTEEEEEEEEE-EC----CCCCBCCSCCCCBSTT
T ss_pred ccCCcccccEEEE---ecCCCCCEEEEEcCCCCCCEEEEEccccCCCCCCCEEEECC-cccCCccCCccEecCCCcccCC
Confidence 3466666766654 777764 4555 2567799999993 12332 11245673322 24442
Q ss_pred -CeE--EEEeeecccccCCCCCeeEEEECCeeee
Q 040244 216 -THT--LVIAANRVMHWDDNVDALSIRLNGEAVD 246 (381)
Q Consensus 216 -~H~--l~i~A~k~a~Wd~~vD~l~vt~dGe~v~ 246 (381)
... |.|..+ .|+..|++||..+.
T Consensus 84 ~g~~f~i~I~~~--------~~~fkV~VNg~h~~ 109 (146)
T 4agr_A 84 YVTTITVRVEIG--------ADGFTLSANGIEIV 109 (146)
T ss_dssp CCCEEEEEEEEC--------SSEEEEEETTEEEE
T ss_pred CCceEEEEEEeC--------CCEEEEEECCeEEE
Confidence 333 334444 68899999998763
No 24
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=24.30 E-value=2.5e+02 Score=25.83 Aligned_cols=20 Identities=15% Similarity=0.497 Sum_probs=12.9
Q ss_pred cCCceEEEeecCCCceEEee
Q 040244 163 GDGVMFYFHGAKGGNFAIVS 182 (381)
Q Consensus 163 GDG~~FYFHGkkd~dFciVS 182 (381)
-||.-||..++...||..+.
T Consensus 56 ~~GlLly~~~~~~~d~~~l~ 75 (383)
T 2jd4_A 56 SSGLIYYVAHQNQMDYATLQ 75 (383)
T ss_dssp SCEEEEEEECTTSSSEEEEE
T ss_pred CCeEEEEeCCCCCCcEEEEE
Confidence 47777776445456887664
No 25
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=23.84 E-value=1.1e+02 Score=26.03 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=15.7
Q ss_pred CeEEEEeeecccccCCCCCeeEEEECCeee
Q 040244 216 THTLVIAANRVMHWDDNVDALSIRLNGEAV 245 (381)
Q Consensus 216 ~H~l~i~A~k~a~Wd~~vD~l~vt~dGe~v 245 (381)
=|++.|... ..++.|++||+..
T Consensus 97 WH~V~v~r~--------~~~~~L~VD~~~~ 118 (195)
T 3sh4_A 97 WHRVTALRE--------GRRGSIQVDGEEL 118 (195)
T ss_dssp CEEEEEEEE--------TTEEEEEETTCCC
T ss_pred eEEEEEEEe--------CCEEEEEECCeee
Confidence 377777655 4678888998754
No 26
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP: b.29.1.1 PDB: 1lec_A* 1led_A*
Probab=23.65 E-value=2.4e+02 Score=25.71 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=54.3
Q ss_pred EccCCceEEEeecCCCceEEeecCCceeeeEEeeeCCCCCC-CCceeEEEEEEeecCeEEEEeeeccccc-CCCCCeeEE
Q 040244 161 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPEGRT-RDYTWVQALAVMFDTHTLVIAANRVMHW-DDNVDALSI 238 (381)
Q Consensus 161 iGGDG~~FYFHGkkd~dFciVSD~~LhINAHFIG~r~~g~~-RDfTWIQALGI~F~~H~l~i~A~k~a~W-d~~vD~l~v 238 (381)
.+|||..|.+.-.+.. ++ -...++|.-+.... -+ .=-+.++|.||+++ -..| |-+.+|+-|
T Consensus 86 ~~gdGlAF~l~p~~~~-------~~--~~g~~LGl~n~~~~~~~-~~n~~vAVEFDT~~-------N~~~~Dp~~nHvGI 148 (243)
T 1gsl_A 86 PTADGLAFFLAPVDSS-------VK--DYGGFLGLFRHETAADP-SKNQVVAVEFDTWI-------NKDWNDPPYPHIGI 148 (243)
T ss_dssp SCBCEEEEEEEETTCC-------CC--CCGGGTTTSCTTTTTCG-GGCCCEEEEEECSC-------CGGGTCCSSCEEEE
T ss_pred CCCCCEEEEEecCCCC-------CC--CCCCcccccccccccCC-ccCcEEEEEecccc-------ccccCCCCCCceee
Confidence 3799999888765432 11 12345666443210 11 11246788888753 2448 667799999
Q ss_pred EECCeeeecCCCCCcee--Ee--CCCCCCeEEEEecCCCeEEEEEC
Q 040244 239 RLNGEAVDIPTGGDAEW--KT--NADERQVLVERTDDTNNVRVKVA 280 (381)
Q Consensus 239 t~dGe~v~ip~~~~a~W--~s--~~~~~~l~V~Rt~~~N~V~V~l~ 280 (381)
-+|+.. .+ ..+.| .+ .+..-.+.|+....++.+.|+|.
T Consensus 149 dvns~~-S~---~~~~~~l~~~~~g~~~~v~I~Yd~~~~~L~V~l~ 190 (243)
T 1gsl_A 149 DVNSIV-SV---ATTRWENDDAYGSSIATAHITYDARSKILTVLLS 190 (243)
T ss_dssp EESSSS-CS---EEEECCHHHHTSCCEEEEEEEEETTTTEEEEEEE
T ss_pred ccCCcc-cc---ceeeeEEeccCCCcEEEEEEEEeCCCCEEEEEEe
Confidence 888741 10 11123 22 01122477788887788877773
No 27
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H cell surface, transport protein; HET: HEC; 1.76A {Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Probab=23.51 E-value=18 Score=35.48 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH
Q 040244 1 MASRKSYILVAFFVFLMGTEAVL 23 (381)
Q Consensus 1 m~~rk~~~lva~~~ll~~~~~~~ 23 (381)
|.+.|+.+|+|...++|++++.+
T Consensus 1 ~~~~~~~~~~~a~~~~~~~~~~~ 23 (874)
T 3ucp_A 1 MSKKLLSVLFGASLAALALSPTA 23 (874)
T ss_dssp -----------------------
T ss_pred CchhHHHHHHHHHHHHHHHHHHh
Confidence 77888776555555555555433
No 28
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=23.30 E-value=2.5e+02 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=16.7
Q ss_pred eEEEEeeecccccCCCCCeeEEEECCeeee
Q 040244 217 HTLVIAANRVMHWDDNVDALSIRLNGEAVD 246 (381)
Q Consensus 217 H~l~i~A~k~a~Wd~~vD~l~vt~dGe~v~ 246 (381)
|++.|... ..++.|++||..+.
T Consensus 298 H~V~v~~~--------~~~~~L~VD~~~~~ 319 (394)
T 1dyk_A 298 HKVTAKKI--------KNRLELVVDGNQVD 319 (394)
T ss_dssp EEEEEEEE--------TTEEEEEETTEEEE
T ss_pred EEEEEEEe--------CCEEEEEECCcccc
Confidence 77777665 56789999998765
No 29
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=23.25 E-value=2.1e+02 Score=25.40 Aligned_cols=11 Identities=0% Similarity=0.148 Sum_probs=7.3
Q ss_pred CeeEEEECCee
Q 040244 234 DALSIRLNGEA 244 (381)
Q Consensus 234 D~l~vt~dGe~ 244 (381)
..+.|++|+++
T Consensus 137 ~~~~L~VD~~~ 147 (226)
T 2r1d_A 137 GNATLQVDSWP 147 (226)
T ss_dssp TEEEEEETTSC
T ss_pred CEEEEEEcCcc
Confidence 45677777764
No 30
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP: b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A*
Probab=22.39 E-value=92 Score=28.81 Aligned_cols=95 Identities=22% Similarity=0.338 Sum_probs=54.6
Q ss_pred EccCCceEEEeecCCCceEEeecCCceeeeEEeeeCCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCCCCeeEEEE
Q 040244 161 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDNVDALSIRL 240 (381)
Q Consensus 161 iGGDG~~FYFHGkkd~dFciVSD~~LhINAHFIG~r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~vD~l~vt~ 240 (381)
.+|||..|.+.--+.. + . -...++|.-+.. + .=-+.++|.||+++= .||-+.+|+-|-+
T Consensus 85 ~~gdGlAF~l~p~~~~-----~--~--~~g~~LGL~n~~---~-~~n~~vAVEFDT~~N--------~~Dp~~nHVGIdv 143 (253)
T 1sbf_A 85 RLADGLAFFLAPIDTK-----P--Q--THAGYLGLFNEN---E-SGDQVVAVEFDTFRN--------SWDPPNPHIGINV 143 (253)
T ss_dssp SCCEEEEEEEEETTCC-----C--C--CCGGGTTTCCTT---S-CCCSCEEEEEECSCC--------TTCCSSSEEEEEE
T ss_pred CCCCcEEEEEecCCCC-----C--C--CCCCccccccCC---C-cccceEEEEeccccC--------CCCCCCCcEEEEc
Confidence 4799999888764332 1 1 123456665432 1 112457888887531 1898889999999
Q ss_pred CCeeeecCCCCCceeEe-CCCCCCeEEEEecCCCeEEEEEC
Q 040244 241 NGEAVDIPTGGDAEWKT-NADERQVLVERTDDTNNVRVKVA 280 (381)
Q Consensus 241 dGe~v~ip~~~~a~W~s-~~~~~~l~V~Rt~~~N~V~V~l~ 280 (381)
|+.. ....+.|.- .+..-.+.|+..+.++.+.|+|.
T Consensus 144 Ns~~----S~~t~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~ 180 (253)
T 1sbf_A 144 NSIR----SIKTTSWDLANNKVAKVLITYDASTSLLVASLV 180 (253)
T ss_dssp SSSS----CSEEEECCCCTTCCEEEEEEEETTTTEEEEEEE
T ss_pred CCcc----ccceecccccCCCeeEEEEEEeCCCcEEEEEEe
Confidence 9731 111122321 11123477788887788887773
No 31
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=22.12 E-value=3.3e+02 Score=25.32 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=22.3
Q ss_pred cCCceEEEeecCCCceEEeecCCceeeeEE-eee-----CCCCCCCCcee
Q 040244 163 GDGVMFYFHGAKGGNFAIVSDDNLQINAHF-IGT-----RPEGRTRDYTW 206 (381)
Q Consensus 163 GDG~~FYFHGkkd~dFciVSD~~LhINAHF-IG~-----r~~g~~RDfTW 206 (381)
-||.-||.-+....||..+.=.+=++-.+| +|. +.+..--|..|
T Consensus 70 ~~GlLly~~~~~~~dfi~l~L~~G~l~~~~~~g~g~~~~~~~~~~~Dg~W 119 (394)
T 1dyk_A 70 ESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQW 119 (394)
T ss_dssp SCEEEEEEECTTSSSEEEEEEETTEEEEEEESSSCEEEEECCSCCCSSSC
T ss_pred CCeEEEEcCCCCCCceEEEEEECCEEEEEEECCCCceEEEcccccCCCCE
Confidence 467777765444577876653332333333 222 12334557777
No 32
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1
Probab=21.69 E-value=1.7e+02 Score=26.41 Aligned_cols=98 Identities=23% Similarity=0.388 Sum_probs=54.1
Q ss_pred EccCCceEEEeecCCCceEEeecCCceeeeEEeeeCCCCCCCCceeEEEEEEeecCeEEEEeeecccccCCC--CCeeEE
Q 040244 161 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPEGRTRDYTWVQALAVMFDTHTLVIAANRVMHWDDN--VDALSI 238 (381)
Q Consensus 161 iGGDG~~FYFHGkkd~dFciVSD~~LhINAHFIG~r~~g~~RDfTWIQALGI~F~~H~l~i~A~k~a~Wd~~--vD~l~v 238 (381)
.+|||..|.+.--+.. +. -...++|.-+.. .-+ .=-+.++|.||+++ -..||-+ .+|+-|
T Consensus 78 ~~gdGlAF~l~p~~~~-------p~--~~g~~LGl~n~~-~~~-~~~~~vAVEFDT~~-------N~~~Dp~~~~nHVgI 139 (234)
T 2bqp_A 78 NVADGFTFFIAPVDTK-------PQ--TGGGYLGVFNSA-EYD-KTTQTVAVEFDTFY-------NAAWDPSNRDRHIGI 139 (234)
T ss_dssp SCCCEEEEEEEETTCC-------CC--CCGGGTTTCSCS-SCC-GGGCCEEEEEECSC-------CTTTSCTTCCCEEEE
T ss_pred CCCCcEEEEEecCCCC-------CC--CCCCcccccccc-CCC-CCCcEEEEEEeccc-------CcccCCCCCCCceeE
Confidence 4799999888765432 00 112345553321 111 11356788888763 1238887 899999
Q ss_pred EECCeeeecCCCCCceeEe-CCCCCCeEEEEecCCCeEEEEEC
Q 040244 239 RLNGEAVDIPTGGDAEWKT-NADERQVLVERTDDTNNVRVKVA 280 (381)
Q Consensus 239 t~dGe~v~ip~~~~a~W~s-~~~~~~l~V~Rt~~~N~V~V~l~ 280 (381)
-+|+.. .+ ..+.|.- .+..-.+.|+....++.+.|+|.
T Consensus 140 dvns~~-S~---~s~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~ 178 (234)
T 2bqp_A 140 DVNSIK-SV---NTKSWKLQNGEEANVVIAFNAATNVLTVSLT 178 (234)
T ss_dssp EESSSS-CS---EEEECCCCTTCEEEEEEEEETTTTEEEEEEE
T ss_pred eeCCcc-cc---ceEeeEEcCCCEEEEEEEEeCCCCEEEEEEe
Confidence 998742 11 1122321 11112367777777777777773
No 33
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*
Probab=20.28 E-value=5.9e+02 Score=26.14 Aligned_cols=120 Identities=12% Similarity=0.235 Sum_probs=67.8
Q ss_pred ccCCCeEEcc-CCceEEEeecCCCceEEeecCCceeeeEEeeeCCCCCCCCce---eEEEEEEeec-----CeE-EEEe-
Q 040244 154 LCYDPRFVGG-DGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPEGRTRDYT---WVQALAVMFD-----THT-LVIA- 222 (381)
Q Consensus 154 ~CgDPRFiGG-DG~~FYFHGkkd~dFciVSD~~LhINAHFIG~r~~g~~RDfT---WIQALGI~F~-----~H~-l~i~- 222 (381)
+-+|+.|+=| +|..|||-|.++....|..-.++..| +|+-||| ||-+.+.-++ .|. .+|-
T Consensus 45 ~~G~v~~v~Gi~gkA~~l~~~~~s~~~V~~~n~ii~N---------~~t~dFSISFWvK~~k~~~~~i~~~~~~e~TIin 115 (452)
T 1a8d_A 45 TYPDAQLVPGINGKAIHLVNNESSEVIVHKAMDIEYN---------DMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIIS 115 (452)
T ss_dssp ECTTCEEEECSSSEEEEEESSTTCCEEEECCGGGTTT---------TTTSCEEEEEEEECCCCCHHHHHHHTTCEEEEEE
T ss_pred cCCceEEeecccCceEEeccCCCcceEEecCchHhhc---------cCCCceEEEEEEECCCcCcccccccccCcceEEe
Confidence 3588999877 99999999977755555555555433 3445666 6666554211 111 2222
Q ss_pred eec------cccc-------------CCCC-CeeEEEECCeeeecCCCCCceeEeCCCCCCeEEEEecCCCeEEEEECCe
Q 040244 223 ANR------VMHW-------------DDNV-DALSIRLNGEAVDIPTGGDAEWKTNADERQVLVERTDDTNNVRVKVAGL 282 (381)
Q Consensus 223 A~k------~a~W-------------d~~v-D~l~vt~dGe~v~ip~~~~a~W~s~~~~~~l~V~Rt~~~N~V~V~l~g~ 282 (381)
..+ -..| .|.. -.=.+.|++.+..||.--.-+|+- |+|+---..+. .|=+.|.
T Consensus 116 ~k~~n~~s~nsGW~I~l~gn~liw~l~Dsng~~~~i~f~~~~~~Isd~~~nkW~f------VtItvDR~g~~-~IYING~ 188 (452)
T 1a8d_A 116 SMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVF------ITITNDRLSSA-NLYINGV 188 (452)
T ss_dssp CCEECGGGCEEEEEEEEETTEEEEEEECTTSCEEEEEEECCSBTTSCSSSSSCEE------EEEEECTTSEE-EEEETTE
T ss_pred eeccccccCCCCeEEEeCCCeEEEEEEcCCCceeeEEeccccccCccccCCeEEE------EEEEECCCCCE-EEEECCE
Confidence 221 1133 2211 223345556666676544578986 55543323344 9999998
Q ss_pred EEEEEEE
Q 040244 283 VELHIKV 289 (381)
Q Consensus 283 ~~I~~~V 289 (381)
+..+..+
T Consensus 189 Lv~s~~I 195 (452)
T 1a8d_A 189 LMGSAEI 195 (452)
T ss_dssp EEEEEEC
T ss_pred Eeeccch
Confidence 8877743
Done!