Query 040245
Match_columns 271
No_of_seqs 170 out of 304
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 99.8 5.6E-20 1.9E-24 153.7 12.6 112 85-196 10-135 (154)
2 2p6y_A Hypothetical protein VC 99.8 6.9E-20 2.4E-24 151.2 12.5 105 93-197 2-120 (142)
3 2dt4_A Hypothetical protein PH 99.8 1.5E-19 5E-24 148.7 10.2 102 94-198 10-132 (143)
4 2h6l_A Hypothetical protein; N 99.8 1.8E-18 6E-23 142.7 9.1 102 94-198 10-132 (146)
5 3htn_A Putative DNA binding pr 99.7 1.1E-16 3.8E-21 133.2 9.6 101 94-196 16-137 (149)
6 3hwu_A Putative DNA-binding pr 99.5 2E-13 7E-18 113.1 9.9 101 94-195 13-133 (147)
7 2ezd_A High mobility group pro 97.3 9.2E-05 3.1E-09 46.5 2.0 16 64-79 3-18 (26)
8 1t3g_A X-linked interleukin-1 53.8 8.7 0.0003 31.3 3.0 28 100-127 51-78 (159)
9 1fyx_A TOLL-like receptor 2; b 40.3 15 0.00052 29.4 2.4 29 99-127 43-71 (149)
10 2j67_A TOLL like receptor 10; 39.6 15 0.00052 30.6 2.4 29 99-127 73-101 (178)
11 3j0a_A TOLL-like receptor 5; m 24.6 42 0.0014 33.0 3.0 29 99-127 711-739 (844)
12 4i95_A Putative uncharacterize 23.5 55 0.0019 27.6 3.1 29 119-149 36-64 (142)
13 4gqw_A CBS domain-containing p 23.2 61 0.0021 23.7 3.1 41 91-131 89-129 (152)
14 3h16_A TIR protein; bacteria T 21.6 53 0.0018 26.0 2.6 30 99-128 56-85 (154)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.82 E-value=5.6e-20 Score=153.74 Aligned_cols=112 Identities=19% Similarity=0.360 Sum_probs=98.9
Q ss_pred eecCCCCCceEEEEEecCCccHHHHHHHHHHhcCc-ccEEecccceeeeEEeeCCCCCC--------cEEEEcC-----C
Q 040245 85 VTRDSPNSLRSHVMEVAGGADVAESVALFARRRQR-GVCVLSGSGSVANVTLRQPAAPG--------AVVALHG-----S 150 (271)
Q Consensus 85 it~~s~~al~pHVIeV~~GeDV~e~I~~Farrr~r-aiCVLSasGtVsnVTLRqp~s~g--------~ivTL~G-----~ 150 (271)
++.++++.+++|++++.+|+||+++|.+||+++++ +.||||+.|+|++|+||++.... +|++|.| .
T Consensus 10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~~~~~~g~~EIlsl~Gti~~~~ 89 (154)
T 2hx0_A 10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTG 89 (154)
T ss_dssp --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSSCEEEEEEEEEEEEEEEEETTE
T ss_pred eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCccEecCCcEEEEEeeeeEeCCC
Confidence 45677899999999999999999999999998886 89999999999999999998632 5677777 3
Q ss_pred CCeEEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccC
Q 040245 151 TGLTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPL 196 (271)
Q Consensus 151 tgLsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl 196 (271)
.||||+|++.||||+||+|....++..+++|++..|.+..|+|.|-
T Consensus 90 ~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D 135 (154)
T 2hx0_A 90 EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPC 135 (154)
T ss_dssp EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEEC
T ss_pred CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecC
Confidence 6899999999999999999987666689999999999999999983
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.82 E-value=6.9e-20 Score=151.18 Aligned_cols=105 Identities=14% Similarity=0.289 Sum_probs=93.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhcCc-ccEEecccceeeeEEeeCCCCCC--------cEEEEcC-----CCCeEEEEe
Q 040245 93 LRSHVMEVAGGADVAESVALFARRRQR-GVCVLSGSGSVANVTLRQPAAPG--------AVVALHG-----STGLTVYLA 158 (271)
Q Consensus 93 l~pHVIeV~~GeDV~e~I~~Farrr~r-aiCVLSasGtVsnVTLRqp~s~g--------~ivTL~G-----~tgLsVSLA 158 (271)
|++|++++.+|+||.++|.+||++.++ +.||+|+.|+|++++||+++.+. +|++|.| ..+|+|+|+
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~~~~~~g~~EIlsl~Gti~~~~~HlHisl~ 81 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFEILSLSGTLTYQHCHLHIAVA 81 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSCEEEECSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCccEecCCcEEEEEeEEEEeCCCCEEEEEEE
Confidence 899999999999999999999999886 89999999999999999998642 5677777 468999999
Q ss_pred CCCCceeceeeccceEecccEEEEEEeccccccccccCC
Q 040245 159 GGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLE 197 (271)
Q Consensus 159 g~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl~ 197 (271)
+.||||+||+|.+..+...+++|++..|.+..|+|.|-+
T Consensus 82 ~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~ 120 (142)
T 2p6y_A 82 DAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDP 120 (142)
T ss_dssp CTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEET
T ss_pred CCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCC
Confidence 999999999999866667899999999999999999833
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.80 E-value=1.5e-19 Score=148.70 Aligned_cols=102 Identities=19% Similarity=0.302 Sum_probs=90.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCCC------------CcEEEEcC---------CCC
Q 040245 94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAP------------GAVVALHG---------STG 152 (271)
Q Consensus 94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s~------------g~ivTL~G---------~tg 152 (271)
++|++++.+|+||.++|.+||+++++..|++|+.|+|++|+||+++.. .+|++|.| ..|
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~p~~H 89 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEPFVH 89 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCCceee
Confidence 799999999999999999999999987677799999999999976542 36788887 369
Q ss_pred eEEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccCCc
Q 040245 153 LTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLED 198 (271)
Q Consensus 153 LsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl~~ 198 (271)
|||+|++.||+|+||||...+ .. +++|++.+|.+..|+|+| ++
T Consensus 90 lHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~e 132 (143)
T 2dt4_A 90 AHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TK 132 (143)
T ss_dssp EEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CT
T ss_pred EEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CC
Confidence 999999999999999999887 44 888999999999999999 54
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.76 E-value=1.8e-18 Score=142.70 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=89.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCCCC------------cEEEEcC---------CCC
Q 040245 94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAAPG------------AVVALHG---------STG 152 (271)
Q Consensus 94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s~g------------~ivTL~G---------~tg 152 (271)
++|+|++.+|+||+++|.+||++.++..|++|+.|+|++++||+++... +|++|.| ..+
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~p~~H 89 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKPFCH 89 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCCceee
Confidence 6999999999999999999999999765556999999999999987532 5777777 368
Q ss_pred eEEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccCCc
Q 040245 153 LTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPLED 198 (271)
Q Consensus 153 LsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl~~ 198 (271)
|+|+|+ .||+|+||+|.+.+| .+++|++.+|.+..|+|+|-++
T Consensus 90 lHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 90 IHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred EEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence 999999 999999999999886 6999999999999999998543
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.68 E-value=1.1e-16 Score=133.17 Aligned_cols=101 Identities=12% Similarity=0.246 Sum_probs=88.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCC------------CCcEEEEcC---------CCC
Q 040245 94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAA------------PGAVVALHG---------STG 152 (271)
Q Consensus 94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s------------~g~ivTL~G---------~tg 152 (271)
+.|++++.+|+||+++|.+||+++++..|++++.|++++|+||+++. +.+|++|.| ..|
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~p~~H 95 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQVYLH 95 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCCceEE
Confidence 78999999999999999999999999877779999999999998653 236788877 359
Q ss_pred eEEEEeCCCCceeceeeccceEecccEEEEEEeccccccccccC
Q 040245 153 LTVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLPL 196 (271)
Q Consensus 153 LsVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlpl 196 (271)
|||+|++.+|+|+||||... ++..+++|++..+.. .++|.+-
T Consensus 96 lH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D 137 (149)
T 3htn_A 96 LHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYN 137 (149)
T ss_dssp EEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEE
T ss_pred EEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeC
Confidence 99999999999999999987 777899999998877 7887753
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.46 E-value=2e-13 Score=113.09 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=86.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhcCcccEEecccceeeeEEeeCCCC-----------CCcEEEEcC---------CCCe
Q 040245 94 RSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVANVTLRQPAA-----------PGAVVALHG---------STGL 153 (271)
Q Consensus 94 ~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVsnVTLRqp~s-----------~g~ivTL~G---------~tgL 153 (271)
+-+++++.+|+||.++|.+||++.+...+++++.|++++++|+.... +.+|++|.| ..||
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~~~Ei~sl~Gtis~~dG~p~~Hl 92 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNVEMANMTGSIAWKEGKPSIHA 92 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEecCcEEEEEEEEEEcCCCCceEEE
Confidence 45899999999999999999999998666779999999999995432 347888888 3599
Q ss_pred EEEEeCCCCceeceeeccceEecccEEEEEEecccccccccc
Q 040245 154 TVYLAGGQGQVVGGSVVGQLVAAGPVMVIAATFANATYERLP 195 (271)
Q Consensus 154 sVSLAg~qGQVvGG~V~G~LiAAgpV~VIaaSF~n~~yeRlp 195 (271)
||+|++.+|+|+|||+....+...+++|++..+. ..+.|.+
T Consensus 93 H~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~ 133 (147)
T 3hwu_A 93 HGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFV 133 (147)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEE
T ss_pred EEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEE
Confidence 9999999999999999988555569999998765 4888877
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.32 E-value=9.2e-05 Score=46.55 Aligned_cols=16 Identities=69% Similarity=1.132 Sum_probs=14.2
Q ss_pred cCCCCCCCCCCCCCCC
Q 040245 64 GTRRPRGRPPGSKNKP 79 (271)
Q Consensus 64 ~~rRpRGRPpGSknKp 79 (271)
..|||||||.|||||.
T Consensus 3 tpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKG 18 (26)
T ss_dssp SCCCCSSCCTTCCCCS
T ss_pred CCcCCCCCcCcccccC
Confidence 3599999999999994
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=53.76 E-value=8.7 Score=31.34 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=25.5
Q ss_pred ecCCccHHHHHHHHHHhcCcccEEeccc
Q 040245 100 VAGGADVAESVALFARRRQRGVCVLSGS 127 (271)
Q Consensus 100 V~~GeDV~e~I~~Farrr~raiCVLSas 127 (271)
+.+|++|.+.|....++..+.|+|||..
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~~ 78 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTPN 78 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECHH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEccc
Confidence 6689999999999999999999999864
No 9
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=40.32 E-value=15 Score=29.35 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=26.0
Q ss_pred EecCCccHHHHHHHHHHhcCcccEEeccc
Q 040245 99 EVAGGADVAESVALFARRRQRGVCVLSGS 127 (271)
Q Consensus 99 eV~~GeDV~e~I~~Farrr~raiCVLSas 127 (271)
.+.+|++|.+.|....++..+.|+|||.+
T Consensus 43 d~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp HCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred cCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 36789999999999999999999999864
No 10
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=39.61 E-value=15 Score=30.59 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=26.1
Q ss_pred EecCCccHHHHHHHHHHhcCcccEEeccc
Q 040245 99 EVAGGADVAESVALFARRRQRGVCVLSGS 127 (271)
Q Consensus 99 eV~~GeDV~e~I~~Farrr~raiCVLSas 127 (271)
.+.+|++|.+.|....++..+.|+|||.+
T Consensus 73 D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 73 YFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp HCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred cCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 36789999999999999998999999864
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=24.55 E-value=42 Score=33.03 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=26.5
Q ss_pred EecCCccHHHHHHHHHHhcCcccEEeccc
Q 040245 99 EVAGGADVAESVALFARRRQRGVCVLSGS 127 (271)
Q Consensus 99 eV~~GeDV~e~I~~Farrr~raiCVLSas 127 (271)
.+.+|++|++.|.+-.++..+.|||||-.
T Consensus 711 d~~~G~~~~~~i~~~i~~sr~~i~vls~~ 739 (844)
T 3j0a_A 711 DFVPGENRIANIQDAIWNSRKIVCLVSRH 739 (844)
T ss_dssp SCCSSSCHHHHHHHHHHHSSEEEEEECTT
T ss_pred ccCCCchHHHHHHHHHHHhCeEEEEeccc
Confidence 47799999999999999999999999875
No 12
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=23.50 E-value=55 Score=27.61 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=24.5
Q ss_pred cccEEecccceeeeEEeeCCCCCCcEEEEcC
Q 040245 119 RGVCVLSGSGSVANVTLRQPAAPGAVVALHG 149 (271)
Q Consensus 119 raiCVLSasGtVsnVTLRqp~s~g~ivTL~G 149 (271)
...=|||.-|++.|++++ | .+++|++..|
T Consensus 36 n~lKIlSdDgtF~Ni~m~-~-~~~aiIt~~G 64 (142)
T 4i95_A 36 NTFKVLSDDGRIVNFTIR-P-GTDAIITGYG 64 (142)
T ss_dssp EEEEEECTTSEEEEEECC-T-TSCCEEEEEE
T ss_pred ccEEEEcCCCcEEEEEEe-c-CCCcEEEEeE
Confidence 356799999999999999 3 3688999888
No 13
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=23.20 E-value=61 Score=23.65 Aligned_cols=41 Identities=10% Similarity=0.273 Sum_probs=32.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhcCcccEEecccceee
Q 040245 91 NSLRSHVMEVAGGADVAESVALFARRRQRGVCVLSGSGSVA 131 (271)
Q Consensus 91 ~al~pHVIeV~~GeDV~e~I~~Farrr~raiCVLSasGtVs 131 (271)
..|++.++.|.+..++.+.+..|.+.+-..++|+...|.+.
T Consensus 89 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~ 129 (152)
T 4gqw_A 89 DLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLV 129 (152)
T ss_dssp HHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEE
T ss_pred HhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEE
Confidence 34566677899999999999999888878899998776544
No 14
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=21.64 E-value=53 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=25.9
Q ss_pred EecCCccHHHHHHHHHHhcCcccEEecccc
Q 040245 99 EVAGGADVAESVALFARRRQRGVCVLSGSG 128 (271)
Q Consensus 99 eV~~GeDV~e~I~~Farrr~raiCVLSasG 128 (271)
++.+|+++.+.|..--++..+.|+|+|-.=
T Consensus 56 ~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y 85 (154)
T 3h16_A 56 SLRPGDSLRRSIDKGLGSSRFGIVVLSTHF 85 (154)
T ss_dssp EECTTCCHHHHHHHHHTSEEEEEEEEEHHH
T ss_pred hCCCccHHHHHHHHHHHhCcEEEEEeCcch
Confidence 578999999999998888888999998653
Done!