BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040247
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 15 FHPNDPQAEVIDPAVMGTVNVLRSCAKDLSIKRVVVTSSMVAIAYNGTPLTPHVVFNATW 74
F DP+ ++I PA+ G VNV+++C + S+KRV++TSS A+ N T VV W
Sbjct: 93 FASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNW 152
Query: 75 ------------NW-YTLSKALAEQEAWKFAKESGIDLVKIHLGFTFGPFLQPNLNLSVK 121
W Y SK LAE+ AWKFA+E+ IDL+ + G L ++ S+
Sbjct: 153 TDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIG 212
Query: 122 LILNLI 127
L ++LI
Sbjct: 213 LAMSLI 218
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 13/114 (11%)
Query: 15 FHPNDPQAEVIDPAVMGTVNVLRSCAKDLSIKRVVVTSS--MVAIAYNGTPLTPHVVFN- 71
F DP+ EVI P + G + +++SCA +++R+V TSS V I + P+ ++
Sbjct: 90 FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSD 149
Query: 72 ---------ATWNWYTLSKALAEQEAWKFAKESGIDLVKIHLGFTFGPFLQPNL 116
W ++ +SK LAEQ AWK+AKE+ ID + I GPF+ ++
Sbjct: 150 MEFCRAKKMTAWMYF-VSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSM 202
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 15/126 (11%)
Query: 15 FHPNDPQAEVIDPAVMGTVNVLRSCAKDLSIKRVVVTSSMVAIAYNGTPLTPHVVFNATW 74
F ++P+ V V G + +L++C ++KR + TSS A+++NG V+ + W
Sbjct: 87 FAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGK--DKDVLDESDW 144
Query: 75 N------------W-YTLSKALAEQEAWKFAKESGIDLVKIHLGFTFGPFLQPNLNLSVK 121
+ W Y +SK LAE+ +F +++GID+V + L F G F+ P L S++
Sbjct: 145 SDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIE 204
Query: 122 LILNLI 127
L L+
Sbjct: 205 KALVLV 210
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 20/92 (21%)
Query: 23 EVIDPAVMGTVNVLRSCAKDLSIKRVVVTSSMVAIAYNGTPLTPHVVFNATWN------- 75
EV+ PA+ GT+N LR+ A S+KR V+TSS V+ + + +WN
Sbjct: 102 EVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKA 161
Query: 76 ------------W-YTLSKALAEQEAWKFAKE 94
W Y SK AE AWKF E
Sbjct: 162 KTLPESDPQKSLWVYAASKTEAELAAWKFXDE 193
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 20/92 (21%)
Query: 23 EVIDPAVMGTVNVLRSCAKDLSIKRVVVTSSMVAIAYNGTPLTPHVVFNATWN------- 75
EV+ PA+ GT+N LR+ A S+KR V+TSS V+ + + +WN
Sbjct: 102 EVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKA 161
Query: 76 ------------W-YTLSKALAEQEAWKFAKE 94
W Y SK AE AWKF E
Sbjct: 162 KTLPESDPQKSLWVYAASKTEAELAAWKFMDE 193
>pdb|3DWO|X Chain X, Crystal Structure Of A Pseudomonas Aeruginosa Fadl
Homologue
Length = 451
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 17 PNDPQAEVIDPAVMGTVNVLRSCAKDLSIKRVVVTSSMVAIAYNG 61
PNDP A +PA M + D I ++ V + + I YNG
Sbjct: 24 PNDPSAAFNNPAAMAFI--------DKRIAQLTVNYADIDIKYNG 60
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 28 AVMGTVNVLRSCAKDLSIKRVVVTSSMVAIAYNGTPLTPHVVFNATWNWYTLS-KALAEQ 86
A+M +N L D R ++ +++A+ P TPH+ F W L + +
Sbjct: 748 AIMELMNKLAKAPTDGEQDRALMQEALLAVVRMLNPFTPHICFTL---WQELKGEGDIDN 804
Query: 87 EAWKFAKESGI 97
W A E +
Sbjct: 805 APWPVADEKAM 815
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 26 DPAVMGTVNVLRSCAKDLSIKRVVVTSSMV--AIAYNG-----TPLTPHVVFNATWNWYT 78
D V+GTV +L K IK V V++ V ++ G TPL P+ Y+
Sbjct: 123 DTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSP-------YS 175
Query: 79 LSKALAEQEAWKFAKESGIDLVKIHLGFTFGPFLQP 114
SKA A+ A + K + ++ +GP+ P
Sbjct: 176 SSKASADXIALAYYKTYQLPVIVTRCSNNYGPYQYP 211
>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|B Chain B, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|C Chain C, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|D Chain D, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
Length = 293
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 22 AEVIDPAVMGTVNVLRSCAKDLSIK---RVVVTSSMVAIAYNGTPLTPHVVFNATWNWYT 78
+EV+D V GTV +++C L+ RV++TSS+ P+T + W+ Y
Sbjct: 144 SEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITG------PVTGY----PGWSHYG 193
Query: 79 LSKA 82
SKA
Sbjct: 194 ASKA 197
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H GF FL P+ N
Sbjct: 164 RQAVANAREAGFDLVELHSAHGFLLHQFLSPSSN 197
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQP 114
Q + AKE+G D+++IH G+ FL P
Sbjct: 147 QNGARRAKEAGFDVIEIHAAHGYLINEFLSP 177
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 164 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 197
>pdb|2BB3|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin-6y
Methylase (Cbie) From Archaeoglobus Fulgidus
pdb|2BB3|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin-6y
Methylase (Cbie) From Archaeoglobus Fulgidus
Length = 221
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 26 DPAVMGTVNVLRSCAKDLSIK-RVVVTSSMVAIAYNGTPLTPHVVFNA 72
DP V G VLR A+D+ IK ++S VA+A L+ V +
Sbjct: 98 DPXVAGLGRVLREIAEDVEIKIEPAISSVQVALARLKVDLSEVAVVDC 145
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 165 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 198
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 165 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 198
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 165 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 198
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 164 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 197
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 165 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 198
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 165 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 198
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 164 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 197
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 165 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSN 198
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 86 QEAWKFAKESGIDLVKIHL--GFTFGPFLQPNLN 117
++A A+E+G DLV++H G+ FL P+ N
Sbjct: 165 RQAVANAREAGFDLVELHSANGYLLHQFLSPSSN 198
>pdb|1YKW|A Chain A, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
pdb|1YKW|B Chain B, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
Length = 435
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 54 MVAIAYNGTPLTPHVVFNATWNWYTLSKALAEQEAWKFAKESGIDLVKIHLGFTFGPFLQ 113
+ A+ GT TP V + + LA+ E KF E D++ H F ++
Sbjct: 113 LTAVCGEGTYFTPGVPVVKLMDIHFPDTYLADFEGPKFGIEGLRDILNAHGRPIFFGVVK 172
Query: 114 PNLNLS 119
PN+ LS
Sbjct: 173 PNIGLS 178
>pdb|1TEL|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Chlorobium Tepidum
pdb|1TEL|B Chain B, Crystal Structure Of A Rubisco-Like Protein From
Chlorobium Tepidum
Length = 435
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 54 MVAIAYNGTPLTPHVVFNATWNWYTLSKALAEQEAWKFAKESGIDLVKIHLGFTFGPFLQ 113
+ A+ GT TP V + + LA+ E KF E D++ H F ++
Sbjct: 113 LTAVCGEGTYFTPGVPVVKLMDIHFPDTYLADFEGPKFGIEGLRDILNAHGRPIFFGVVK 172
Query: 114 PNLNLS 119
PN+ LS
Sbjct: 173 PNIGLS 178
>pdb|2FB6|A Chain A, Structure Of Conserved Protein Of Unknown Function Bt1422
From Bacteroides Thetaiotaomicron
Length = 117
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 13 LFFHPNDPQAEVIDPAVMG-TVNVLRSCAKDLSIKRVVVTSSMVAIAYNGTPLTPHV 68
L + Q E+++ G T+ + C ++ + ++ T+ + + Y G PLT ++
Sbjct: 53 LVANDTQVQTEILEXLQSGITIEACQDCCENFGVASII-TNLGITVRYXGIPLTEYL 108
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 77 YTLSKALAEQEAWKFAKESGIDLVKIHLGFTFGPFLQPNLNLS--------VKLILNLI 127
Y++SK L ++ W + ++ G+ GP L NLN + +LILNL+
Sbjct: 463 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD-NLNAARIGSSRAITQLILNLV 520
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,706,281
Number of Sequences: 62578
Number of extensions: 130071
Number of successful extensions: 359
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 38
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)