BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040250
         (395 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CF4|A Chain A, Structure Of The Codh Component Of The M. Barkeri Acds
           Complex
          Length = 807

 Score = 32.3 bits (72), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 307 LTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGV-AFMGMEKVDFFWYFRKV 356
           +T+LP D E   ++A CA  G  +L       +   MG  K   F YF ++
Sbjct: 401 ITALPTDEELVNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEI 451


>pdb|1A80|A Chain A, Native 2,5-Diketo-D-Gluconic Acid Reductase A From
           Corynbacterium Sp. Complexed With Nadph
          Length = 277

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 5/37 (13%)

Query: 257 SLEAAGLMRKIG--NYLDAHIPNIDLIASAIGVVSAV 291
            L AAGL R IG  N+L   +P+++ I +A GVV AV
Sbjct: 125 ELRAAGLTRSIGVSNHL---VPHLERIVAATGVVPAV 158


>pdb|1HW6|A Chain A, Crystal Structure Of Apo-2,5-Diketo-D-Gluconate Reductase
          Length = 278

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 5/37 (13%)

Query: 257 SLEAAGLMRKIG--NYLDAHIPNIDLIASAIGVVSAV 291
            L AAGL R IG  N+L   +P+++ I +A GVV AV
Sbjct: 126 ELRAAGLTRSIGVSNHL---VPHLERIVAATGVVPAV 159


>pdb|1M9H|A Chain A, Corynebacterium 2,5-dkgr A And Phe 22 Replaced With Tyr
           (f22y), Lys 232 Replaced With Gly (k232g), Arg 238
           Replaced With His (r238h)and Ala 272 Replaced With Gly
           (a272g)in Presence Of Nadh Cofactor
          Length = 278

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 5/37 (13%)

Query: 257 SLEAAGLMRKIG--NYLDAHIPNIDLIASAIGVVSAV 291
            L AAGL R IG  N+L   +P+++ I +A GVV AV
Sbjct: 126 ELRAAGLTRSIGVSNHL---VPHLERIVAATGVVPAV 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,210,976
Number of Sequences: 62578
Number of extensions: 255063
Number of successful extensions: 436
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 6
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)