Query 040250
Match_columns 395
No_of_seqs 153 out of 1528
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00137 NHAD transporter fami 100.0 1.6E-51 3.5E-56 407.7 39.1 372 3-375 50-422 (424)
2 TIGR00775 NhaD Na+/H+ antiport 100.0 3.6E-48 7.7E-53 383.8 38.6 357 11-375 54-414 (420)
3 COG1055 ArsB Na+/H+ antiporter 100.0 5.9E-47 1.3E-51 370.8 35.8 348 15-372 52-422 (424)
4 PLN00136 silicon transporter; 100.0 3.1E-44 6.7E-49 360.8 35.6 344 13-371 56-477 (482)
5 PRK15445 arsenical pump membra 100.0 3.4E-43 7.4E-48 352.0 39.4 348 18-372 52-421 (427)
6 cd01118 ArsB_permease Anion pe 100.0 3.8E-42 8.2E-47 343.7 38.7 349 12-370 42-414 (416)
7 PRK09547 nhaB sodium/proton an 100.0 5.3E-42 1.1E-46 338.5 33.7 337 19-373 94-498 (513)
8 PF02040 ArsB: Arsenical pump 100.0 1.3E-40 2.9E-45 326.8 37.8 357 9-372 42-420 (423)
9 cd01117 YbiR_permease Putative 100.0 9.9E-41 2.2E-45 330.2 35.4 337 13-370 34-383 (384)
10 TIGR00935 2a45 arsenical pump 100.0 3.2E-40 7E-45 331.0 37.5 344 16-372 51-422 (429)
11 KOG2639 Sodium sulfate symport 100.0 1.4E-41 3.1E-46 326.9 22.2 346 19-379 232-682 (685)
12 cd01116 P_permease Permease P 100.0 1.6E-38 3.4E-43 317.4 36.1 346 11-369 38-410 (413)
13 PF00939 Na_sulph_symp: Sodium 100.0 2.3E-37 5E-42 313.5 33.1 353 11-375 73-465 (471)
14 TIGR00774 NhaB Na+/H+ antiport 100.0 9.2E-37 2E-41 293.8 31.7 351 14-374 86-498 (515)
15 TIGR00785 dass anion transport 100.0 3.5E-36 7.7E-41 303.1 33.0 349 13-373 56-442 (444)
16 COG0471 CitT Di- and tricarbox 100.0 7.7E-35 1.7E-39 292.9 33.1 356 10-377 73-458 (461)
17 cd00625 ArsB_NhaD_permease Ani 100.0 1.1E-33 2.3E-38 281.0 33.9 341 12-369 31-394 (396)
18 cd01115 SLC13_permease Permeas 100.0 6.6E-33 1.4E-37 274.1 34.7 318 13-374 39-381 (382)
19 PF03600 CitMHS: Citrate trans 100.0 2.8E-29 6E-34 245.5 29.0 287 7-327 40-350 (351)
20 TIGR00784 citMHS citrate trans 100.0 1.9E-28 4.1E-33 244.8 35.5 347 5-371 43-422 (431)
21 KOG1281 Na+/dicarboxylate, Na+ 100.0 7.9E-27 1.7E-31 230.8 25.3 365 16-391 87-585 (586)
22 COG2851 CitM H+/citrate sympor 99.9 4.1E-21 8.9E-26 179.5 22.4 343 5-363 44-416 (433)
23 PLN00136 silicon transporter; 99.9 1.9E-20 4.1E-25 188.7 20.8 172 199-381 31-209 (482)
24 TIGR00786 dctM TRAP transporte 99.8 1.4E-15 3E-20 151.7 35.8 320 30-370 48-394 (405)
25 cd01118 ArsB_permease Anion pe 99.8 1.7E-17 3.7E-22 166.0 21.2 170 199-379 18-200 (416)
26 PRK09412 anaerobic C4-dicarbox 99.8 7.6E-16 1.6E-20 153.6 32.2 319 19-355 48-404 (433)
27 PRK15445 arsenical pump membra 99.8 2.2E-17 4.8E-22 165.6 21.2 172 199-381 19-203 (427)
28 TIGR00771 DcuC c4-dicarboxylat 99.7 1.4E-14 3E-19 142.7 32.9 351 7-364 7-387 (388)
29 PF06450 NhaB: Bacterial Na+/H 99.7 4.4E-16 9.6E-21 146.4 20.3 351 3-369 82-494 (515)
30 cd01117 YbiR_permease Putative 99.7 4E-16 8.6E-21 154.5 19.3 169 200-379 10-185 (384)
31 TIGR00935 2a45 arsenical pump 99.7 3.2E-16 6.9E-21 157.4 18.7 176 195-381 16-204 (429)
32 PRK10654 dcuC C4-dicarboxylate 99.7 1.7E-13 3.7E-18 136.9 36.8 341 20-375 78-451 (455)
33 TIGR00770 Dcu anaerobic c4-dic 99.7 3.7E-14 8E-19 140.9 29.4 133 19-154 44-185 (430)
34 COG1055 ArsB Na+/H+ antiporter 99.7 1.3E-15 2.9E-20 150.0 18.2 167 199-376 22-198 (424)
35 PF03600 CitMHS: Citrate trans 99.6 4.2E-15 9.1E-20 145.4 17.1 172 198-376 15-196 (351)
36 cd00625 ArsB_NhaD_permease Ani 99.6 2.9E-15 6.2E-20 148.9 15.9 171 200-381 8-186 (396)
37 PLN00137 NHAD transporter fami 99.6 7.3E-15 1.6E-19 146.2 18.1 173 195-377 21-205 (424)
38 TIGR00775 NhaD Na+/H+ antiport 99.6 9.6E-15 2.1E-19 145.3 18.9 173 195-379 19-203 (420)
39 TIGR00785 dass anion transport 99.6 7.4E-15 1.6E-19 148.2 16.9 168 201-379 29-224 (444)
40 cd01116 P_permease Permease P 99.6 5.4E-14 1.2E-18 140.6 18.9 173 201-380 13-193 (413)
41 PF02040 ArsB: Arsenical pump 99.6 9.4E-14 2E-18 137.2 19.6 181 197-388 16-209 (423)
42 cd01115 SLC13_permease Permeas 99.5 4.1E-13 8.9E-18 132.8 19.8 155 201-366 16-184 (382)
43 COG3067 NhaB Na+/H+ antiporter 99.5 2.5E-13 5.3E-18 125.4 15.6 351 3-369 82-494 (516)
44 PRK12489 anaerobic C4-dicarbox 99.5 4.8E-11 1E-15 118.1 27.6 134 19-155 48-195 (443)
45 TIGR00774 NhaB Na+/H+ antiport 99.4 2.5E-12 5.4E-17 125.3 16.1 145 230-375 80-263 (515)
46 PRK09547 nhaB sodium/proton an 99.4 1.6E-11 3.4E-16 122.6 20.9 140 230-371 80-260 (513)
47 PF03606 DcuC: C4-dicarboxylat 99.4 5.8E-10 1.3E-14 112.7 31.7 354 9-372 68-461 (465)
48 KOG2639 Sodium sulfate symport 99.4 2.7E-13 5.9E-18 132.3 6.8 145 230-375 220-378 (685)
49 PF06808 DctM: DctM-like trans 99.4 1.6E-09 3.4E-14 108.2 30.5 322 29-368 62-408 (416)
50 PRK15060 L-dehydroascorbate tr 99.3 1.1E-08 2.3E-13 101.5 34.4 318 29-368 63-408 (425)
51 PF02447 GntP_permease: GntP f 99.3 6.5E-09 1.4E-13 103.5 32.2 358 4-370 43-434 (441)
52 TIGR00791 gntP gluconate trans 99.3 2.7E-08 5.9E-13 100.2 37.2 359 4-373 43-435 (440)
53 PRK09804 putative cryptic C4-d 99.3 2.5E-08 5.5E-13 98.2 33.7 357 7-374 61-453 (455)
54 PF07854 DUF1646: Protein of u 99.3 5.5E-10 1.2E-14 103.5 20.6 245 52-371 98-344 (347)
55 PRK14984 high-affinity glucona 99.2 8.8E-08 1.9E-12 95.1 35.1 359 4-373 43-433 (438)
56 PRK09821 putative transporter; 99.2 6.6E-08 1.4E-12 96.5 32.1 149 4-155 47-200 (454)
57 PRK10472 low affinity gluconat 99.2 1.2E-07 2.5E-12 94.5 33.7 363 4-373 47-440 (445)
58 PF00939 Na_sulph_symp: Sodium 99.2 9.1E-10 2E-14 112.0 18.3 167 201-378 49-243 (471)
59 TIGR02123 TRAP_fused TRAP tran 99.2 1.3E-07 2.9E-12 98.0 33.7 333 20-368 165-524 (613)
60 PRK10034 fructuronate transpor 99.2 2.2E-07 4.8E-12 92.7 33.4 137 4-142 46-186 (447)
61 COG1593 DctQ TRAP-type C4-dica 99.2 2.4E-07 5.3E-12 89.2 32.0 328 23-367 10-361 (379)
62 TIGR00529 AF0261 converved hyp 99.1 5.5E-07 1.2E-11 88.8 32.5 334 4-370 42-383 (387)
63 PRK09921 permease DsdX; Provis 99.1 1.4E-06 3.1E-11 87.3 34.9 362 4-374 48-441 (445)
64 COG3069 DcuC C4-dicarboxylate 99.0 1.4E-07 3.1E-12 89.1 23.3 345 9-366 62-441 (451)
65 COG0471 CitT Di- and tricarbox 99.0 1.2E-08 2.6E-13 103.2 16.9 147 232-378 73-236 (461)
66 COG2610 GntT H+/gluconate symp 99.0 3.3E-06 7.1E-11 83.6 32.7 111 7-118 47-161 (442)
67 PRK09412 anaerobic C4-dicarbox 99.0 4E-08 8.7E-13 98.4 18.1 138 240-377 46-193 (433)
68 TIGR00931 antiport_nhaC Na+/H+ 98.9 6.1E-06 1.3E-10 83.1 33.5 343 4-357 52-431 (454)
69 PF03605 DcuA_DcuB: Anaerobic 98.9 2.8E-07 6.1E-12 87.9 22.4 135 19-155 44-187 (364)
70 PRK11588 hypothetical protein; 98.9 2.6E-06 5.7E-11 85.6 30.4 351 9-373 94-499 (506)
71 PRK12489 anaerobic C4-dicarbox 98.8 2E-07 4.2E-12 92.7 17.6 138 239-377 45-198 (443)
72 PF04165 DUF401: Protein of un 98.8 7.7E-06 1.7E-10 80.3 28.3 323 18-373 53-384 (385)
73 PRK11339 abgT putative aminobe 98.8 4E-05 8.7E-10 77.1 33.3 103 4-111 71-179 (508)
74 KOG1281 Na+/dicarboxylate, Na+ 98.7 4.3E-08 9.3E-13 98.4 7.5 121 19-143 433-560 (586)
75 TIGR00770 Dcu anaerobic c4-dic 98.6 1.1E-06 2.4E-11 87.7 16.6 140 238-377 40-189 (430)
76 TIGR00819 ydaH p-Aminobenzoyl- 98.6 9.6E-05 2.1E-09 74.7 30.0 350 8-369 74-489 (513)
77 COG1757 NhaC Na+/H+ antiporter 98.6 0.00021 4.7E-09 72.7 30.8 345 8-361 72-451 (485)
78 COG1288 Predicted membrane pro 98.6 1.1E-05 2.4E-10 78.4 20.2 324 31-371 109-475 (481)
79 PF02652 Lactate_perm: L-lacta 98.5 0.00072 1.6E-08 69.2 33.8 128 233-367 378-515 (522)
80 COG2056 Predicted permease [Ge 98.5 0.00014 3E-09 69.0 25.7 347 4-368 40-442 (444)
81 PF07399 DUF1504: Protein of u 98.5 0.00024 5.1E-09 68.8 27.4 286 50-365 132-433 (438)
82 TIGR00784 citMHS citrate trans 98.5 6.3E-06 1.4E-10 82.9 17.4 138 242-381 57-202 (431)
83 TIGR00786 dctM TRAP transporte 98.4 1.1E-05 2.4E-10 80.5 17.6 146 3-152 244-395 (405)
84 COG2704 DcuB Anaerobic C4-dica 98.4 1E-05 2.3E-10 76.6 15.4 133 19-153 48-188 (436)
85 PF03806 ABG_transport: AbgT p 98.4 0.0025 5.3E-08 64.2 32.2 101 6-111 63-169 (502)
86 PF07158 MatC_N: Dicarboxylate 98.3 7E-06 1.5E-10 69.2 10.3 95 12-109 46-149 (149)
87 PRK09695 glycolate transporter 98.1 0.0091 2E-07 61.7 29.8 87 4-90 62-152 (560)
88 PRK10654 dcuC C4-dicarboxylate 98.0 0.00033 7.1E-09 70.6 18.1 146 3-152 291-447 (455)
89 COG4756 Predicted cation trans 98.0 0.00027 5.8E-09 64.0 15.0 79 286-371 277-356 (367)
90 PRK10420 L-lactate permease; P 98.0 0.028 6E-07 58.1 31.9 86 5-90 63-152 (551)
91 COG1906 Uncharacterized conser 97.9 0.004 8.8E-08 58.4 21.6 317 17-367 57-381 (388)
92 PF07158 MatC_N: Dicarboxylate 97.9 0.00059 1.3E-08 57.6 14.8 95 231-328 43-145 (149)
93 TIGR00795 lctP L-lactate trans 97.9 0.035 7.6E-07 57.2 30.6 84 4-90 53-143 (530)
94 COG4664 FcbT3 TRAP-type mannit 97.9 0.0083 1.8E-07 56.8 23.0 328 21-368 66-429 (447)
95 COG1593 DctQ TRAP-type C4-dica 97.9 0.00098 2.1E-08 64.6 17.6 144 4-152 215-365 (379)
96 TIGR00771 DcuC c4-dicarboxylat 97.9 0.00041 8.8E-09 68.7 15.2 137 5-145 244-387 (388)
97 PF03553 Na_H_antiporter: Na+/ 97.8 0.001 2.2E-08 63.7 16.0 116 4-122 146-268 (303)
98 PRK15060 L-dehydroascorbate tr 97.7 0.0024 5.3E-08 63.7 18.4 144 4-151 261-410 (425)
99 COG1757 NhaC Na+/H+ antiporter 97.4 0.0032 6.9E-08 64.2 14.3 138 4-141 308-450 (485)
100 TIGR00931 antiport_nhaC Na+/H+ 97.4 0.019 4.2E-07 58.0 19.5 132 242-376 69-207 (454)
101 COG1620 LldP L-lactate permeas 97.3 0.25 5.4E-06 50.0 28.7 134 234-374 372-515 (522)
102 PRK09804 putative cryptic C4-d 97.3 0.016 3.4E-07 57.8 16.9 143 5-151 299-449 (455)
103 COG2978 AbgT Putative p-aminob 97.3 0.24 5.1E-06 49.2 24.5 102 5-111 73-180 (516)
104 COG4666 TRAP-type uncharacteri 97.1 0.036 7.8E-07 56.9 17.8 260 20-292 186-468 (642)
105 PF06808 DctM: DctM-like trans 97.1 0.024 5.2E-07 56.8 16.6 138 4-146 261-405 (416)
106 TIGR00791 gntP gluconate trans 97.1 0.048 1E-06 55.1 18.5 161 197-364 18-186 (440)
107 PF06166 DUF979: Protein of un 97.0 0.055 1.2E-06 50.6 16.7 138 234-374 154-306 (308)
108 TIGR02123 TRAP_fused TRAP tran 96.9 0.067 1.5E-06 56.1 18.0 143 4-151 376-526 (613)
109 PF03606 DcuC: C4-dicarboxylat 96.8 0.026 5.7E-07 57.4 13.9 146 3-152 306-460 (465)
110 PF03553 Na_H_antiporter: Na+/ 96.6 0.31 6.8E-06 46.5 19.6 98 243-340 162-267 (303)
111 PRK10472 low affinity gluconat 96.6 0.2 4.3E-06 50.5 18.4 158 197-369 22-196 (445)
112 PF02667 SCFA_trans: Short cha 96.6 0.9 2E-05 45.5 27.5 68 3-70 42-111 (453)
113 PF03605 DcuA_DcuB: Anaerobic 96.6 0.076 1.7E-06 51.3 14.6 134 239-373 41-186 (364)
114 PRK09821 putative transporter; 96.4 0.46 1E-05 48.0 19.3 125 249-377 70-203 (454)
115 PRK10034 fructuronate transpor 96.2 0.48 1E-05 47.8 18.5 163 197-366 21-191 (447)
116 PF02447 GntP_permease: GntP f 96.2 0.46 9.9E-06 47.9 18.1 126 247-377 64-199 (441)
117 TIGR00529 AF0261 converved hyp 96.1 0.42 9.2E-06 47.4 17.4 137 5-150 244-382 (387)
118 TIGR00366 conserved hypothetic 95.9 2.1 4.6E-05 42.8 27.7 68 3-70 39-108 (438)
119 PRK14984 high-affinity glucona 95.9 0.66 1.4E-05 46.6 17.5 114 249-366 66-188 (438)
120 COG3069 DcuC C4-dicarboxylate 95.8 0.12 2.7E-06 49.7 11.5 142 3-148 290-442 (451)
121 PF04165 DUF401: Protein of un 95.8 0.54 1.2E-05 46.5 16.4 138 5-151 242-381 (385)
122 PF07854 DUF1646: Protein of u 95.4 0.26 5.7E-06 46.7 11.9 124 9-152 219-344 (347)
123 PF06450 NhaB: Bacterial Na+/H 95.4 0.065 1.4E-06 51.9 8.0 146 9-155 344-499 (515)
124 PRK11588 hypothetical protein; 95.3 0.78 1.7E-05 46.8 15.7 145 3-151 338-496 (506)
125 PRK09921 permease DsdX; Provis 95.2 1.1 2.3E-05 45.4 16.3 127 247-377 69-204 (445)
126 TIGR00819 ydaH p-Aminobenzoyl- 94.9 1.8 3.9E-05 44.3 17.0 140 3-145 330-484 (513)
127 PRK11339 abgT putative aminobe 94.9 1.4 3.1E-05 44.9 16.2 140 3-145 328-482 (508)
128 PF02652 Lactate_perm: L-lacta 94.4 1.8 3.9E-05 44.7 16.0 140 2-149 369-516 (522)
129 COG2851 CitM H+/citrate sympor 94.4 0.44 9.5E-06 46.2 10.6 135 241-381 59-203 (433)
130 COG3817 Predicted membrane pro 94.4 0.73 1.6E-05 42.1 11.3 140 234-375 158-311 (313)
131 COG4756 Predicted cation trans 94.2 0.39 8.4E-06 44.0 9.4 125 10-154 232-358 (367)
132 COG2610 GntT H+/gluconate symp 94.1 4.4 9.5E-05 40.8 17.5 123 254-377 72-201 (442)
133 COG1906 Uncharacterized conser 91.1 7.8 0.00017 37.0 13.6 130 10-149 247-382 (388)
134 PRK10420 L-lactate permease; P 90.5 12 0.00027 38.9 16.0 137 2-147 389-534 (551)
135 TIGR00795 lctP L-lactate trans 89.8 11 0.00024 39.1 14.9 138 3-148 376-521 (530)
136 PRK09695 glycolate transporter 89.6 14 0.00031 38.5 15.6 137 2-147 397-542 (560)
137 TIGR00366 conserved hypothetic 88.9 4.8 0.0001 40.3 11.0 89 3-91 293-392 (438)
138 PF03806 ABG_transport: AbgT p 88.7 31 0.00067 35.4 16.9 140 3-145 323-477 (502)
139 COG2056 Predicted permease [Ge 88.7 11 0.00024 36.6 12.8 86 30-118 309-402 (444)
140 PF02690 Na_Pi_cotrans: Na+/Pi 87.6 8.9 0.00019 32.3 10.5 83 247-332 2-85 (142)
141 PF13194 DUF4010: Domain of un 86.6 24 0.00052 31.9 13.3 95 39-152 7-101 (211)
142 COG1620 LldP L-lactate permeas 86.0 23 0.00051 36.2 14.0 134 2-145 362-505 (522)
143 COG3067 NhaB Na+/H+ antiporter 85.7 1.1 2.5E-05 42.6 4.4 145 9-154 344-498 (516)
144 COG4666 TRAP-type uncharacteri 83.7 4.3 9.3E-05 42.2 7.8 144 244-390 187-343 (642)
145 PF07399 DUF1504: Protein of u 83.3 12 0.00026 36.9 10.4 83 59-148 346-435 (438)
146 COG2704 DcuB Anaerobic C4-dica 80.7 3.2 7E-05 40.2 5.3 130 238-369 44-185 (436)
147 PF02690 Na_Pi_cotrans: Na+/Pi 78.0 8.1 0.00018 32.5 6.5 82 24-114 2-86 (142)
148 PF13726 Na_H_antiport_2: Na+- 77.8 9.2 0.0002 29.3 6.0 47 4-50 39-85 (88)
149 PF06166 DUF979: Protein of un 75.2 69 0.0015 30.4 12.2 150 2-154 144-305 (308)
150 COG1288 Predicted membrane pro 73.2 11 0.00025 37.6 6.9 136 239-377 96-240 (481)
151 COG1283 NptA Na+/phosphate sym 72.4 1.1E+02 0.0023 31.7 13.9 88 245-334 141-229 (533)
152 COG2978 AbgT Putative p-aminob 68.5 1.4E+02 0.0031 30.3 14.8 140 3-145 335-489 (516)
153 TIGR00704 NaPi_cotrn_rel Na/Pi 65.9 24 0.00051 33.9 7.3 87 19-114 9-98 (307)
154 COG2271 UhpC Sugar phosphate p 65.1 45 0.00097 33.5 9.1 103 50-160 90-211 (448)
155 PRK10519 hypothetical protein; 63.8 67 0.0015 27.4 8.9 45 4-48 8-53 (151)
156 PRK10519 hypothetical protein; 60.5 31 0.00067 29.4 6.3 118 239-369 20-145 (151)
157 COG3732 SrlE Phosphotransferas 57.5 23 0.0005 32.8 5.2 99 232-334 178-286 (328)
158 TIGR00704 NaPi_cotrn_rel Na/Pi 51.6 81 0.0018 30.3 8.3 86 244-332 11-97 (307)
159 TIGR00825 EIIBC-GUT PTS system 46.5 34 0.00075 32.2 4.6 92 243-334 188-289 (331)
160 COG4664 FcbT3 TRAP-type mannit 44.8 3.1E+02 0.0068 26.8 13.6 119 19-143 295-423 (447)
161 COG0700 SpmB Uncharacterized m 32.6 3.1E+02 0.0068 23.3 10.5 126 240-375 30-161 (162)
162 COG5122 TRS23 Transport protei 30.4 17 0.00037 29.1 -0.0 11 384-394 112-122 (134)
163 PF06149 DUF969: Protein of un 26.9 4.8E+02 0.01 23.6 15.0 147 3-155 38-212 (218)
164 PF10746 Phage_holin_6: Phage 25.0 2E+02 0.0044 20.7 4.6 21 115-135 17-38 (66)
165 PF02667 SCFA_trans: Short cha 24.9 2.8E+02 0.0061 28.2 7.4 140 3-148 296-446 (453)
166 COG1283 NptA Na+/phosphate sym 24.5 2.7E+02 0.0059 28.9 7.3 83 19-112 12-99 (533)
167 PF13726 Na_H_antiport_2: Na+- 23.1 2.1E+02 0.0046 21.9 4.8 32 244-275 56-87 (88)
168 COG2814 AraJ Arabinose efflux 21.3 8.3E+02 0.018 24.4 20.6 20 59-78 86-105 (394)
169 COG4325 Predicted membrane pro 20.7 5.3E+02 0.011 25.7 8.0 59 11-69 82-141 (464)
170 TIGR01109 Na_pump_decarbB sodi 20.0 2.3E+02 0.0049 27.5 5.3 29 20-48 210-238 (354)
No 1
>PLN00137 NHAD transporter family protein; Provisional
Probab=100.00 E-value=1.6e-51 Score=407.66 Aligned_cols=372 Identities=84% Similarity=1.273 Sum_probs=294.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVS 82 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~P 82 (395)
+.+++.+.+.|++.+++|++.+++|+|++++.++|+|++|+++.++.++|+|++++.+++.++++|++++|+++++++.|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~l~~~g~f~~~a~~~~~~~~~~l~~~~~~~~~~lS~~l~N~tt~l~~~p 129 (424)
T PLN00137 50 SLEIVTLELRHALAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDSITTRSPRTLLWVVGFITFFLSSILDNLTTTIVMVS 129 (424)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhcccc
Q 040250 83 LVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRK 161 (395)
Q Consensus 83 i~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~ 161 (395)
++.++.+..+.++...+.++++||+||+.||+|||||+++++.++++|.||+.++.||.+++.++.+.++++. |++. +
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~aaNiGg~~TpiGnp~NllI~~~~~lsf~~f~~~l~~P~li~~lv~~~i~~~~~~~~~-~ 208 (424)
T PLN00137 130 LLRKLVPPSEYRKLLGAVVVVAANAGGAWTPIGDVTTTMLWIHGQISTLPTMQGLFLPSAVSLAVPLALMSLTSEENG-S 208 (424)
T ss_pred HHHHHhhcccchHHHHHHHHHhccccceeccCCCcCeeeehccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C
Confidence 9988733222223335689999999999999999999999988899999988899999998877666666544 4332 1
Q ss_pred ccCCcccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccC
Q 040250 162 GQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIN 241 (395)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~ 241 (395)
.++.++.+++++.++|++....+.++.+++...++...|+|+++.++.++.++.+.....+++++++++.+++|.++++|
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~gl~~~~~al~~~~~lll~~~~~~~~~~~~~~~~~~~~l~~Vd 288 (424)
T PLN00137 209 PQDSSPLLASEQMAPRGQLVFGVGVGALLFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQALSRID 288 (424)
T ss_pred hhhccccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHhCC
Confidence 11111112233444555544444443333333566678999998888776655443322222222334578999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCCChhHHHHHH
Q 040250 242 MQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIA 321 (395)
Q Consensus 242 w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~~~~~~~~l~ 321 (395)
|+++++|+|+|+++++++++|+.+++++.+....++...+.++++++|+++||+|.+++++|+....+.+...+.|++++
T Consensus 289 w~tLlfF~GlFilvgal~~tG~~~~la~~l~~~~~~~~~i~~~s~ilS~~IsNVP~~~~~~p~~~~~~~~~~~~~w~aLa 368 (424)
T PLN00137 289 TQGILFFLGILLSVGSLDAAGILRELANYLDANIPNVELIASAIGVASAIIDNVPLVAATMGMYDLTDYPMDSELWQLIA 368 (424)
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcchHHHHHHhhhhhhccCCcchHHHHHHH
Confidence 99999999999999999999999999999987665555688999999999999999999999976333333357899999
Q ss_pred HHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 322 YCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVN 375 (395)
Q Consensus 322 ~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~ 375 (395)
+++|+|||+|++||.+|++.++.++.+|..+++.--|..++++++++.+++.++
T Consensus 369 lga~lGGn~tliGS~Anvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (424)
T PLN00137 369 LCAGTGGSLLVIGSAAGVAFMGMEKVDFFWYLRKVSGFAFAGYVAGIAAYLAVN 422 (424)
T ss_pred HHhCccchHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887665655555567899999999999887765
No 2
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=100.00 E-value=3.6e-48 Score=383.78 Aligned_cols=357 Identities=44% Similarity=0.809 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC
Q 040250 11 LSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPP 90 (395)
Q Consensus 11 ~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l~~~ 90 (395)
..|+..+++|++.+++|+|++++.++|+|.+|+++.++.+++.|++++.+++.++++|++++|+++++++.|+..++.+.
T Consensus 54 ~~~~~~d~~~ti~~LfgmMiiv~~l~~~g~f~~la~~l~~~s~r~Ll~~l~l~t~~lSa~LdN~tt~ll~~Pv~l~i~~~ 133 (420)
T TIGR00775 54 LEEEIADMAQVIFFLFVAMAIVELIDAHKGFSALVAWCVGKSRKKLLWLLGFLSFFLSAALDNLTSIIIIISILKRLVKA 133 (420)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34677788999999999999999999999999999999877779999999999999999999999999999999887432
Q ss_pred ChhhHHHHHH--HHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCcc
Q 040250 91 SEYRKLLGAV--VVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSN 167 (395)
Q Consensus 91 ~~~~~~l~~~--i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~ 167 (395)
.|.+ ++++ ++++||+||++||+|||||+++++.++++|.|++.+..||+++++++.+.++++. |++.+. +..++
T Consensus 134 ~~~~--~ll~~~i~~AANiGG~~TpIGdP~Ni~i~~~~~i~f~~f~~~l~~p~li~l~v~~~il~~~~~~~~~~-~~~~~ 210 (420)
T TIGR00775 134 REDR--LLLGAICVIAVNAGGAWTPLGDVTTTMLWINGKIRFSGIIMPLFVPSLVCVVVAGFCGQLFLPKRKPN-TIHED 210 (420)
T ss_pred CCcc--chHHhHHHHhcccccceeeCCCcchhHhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccc
Confidence 2222 2345 8999999999999999999999998899999888899999998877766666553 432211 11111
Q ss_pred cccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccch-hhccCCHHHHhcccCchHHH
Q 040250 168 VLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGES-ERQKLKVPQALSRINMQVPL 246 (395)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~v~w~~l~ 246 (395)
.++++..+++++... +.++.+.....++...|+|+.++++.++.++.+....+++++. +|++.+++|.++++||++++
T Consensus 211 ~~~~~~~~~~~~~l~-l~~~~~l~~f~~~~~~~l~~~~~al~~~~~lll~~~~l~~~~~~~~~~~~~~~~l~~VDw~tLl 289 (420)
T TIGR00775 211 VELKRALPKSRRIVL-LGVGSLLMVPSWKAVLGFPPFMGALLGLGLVWLFSDWIHSPHGEKRLHLRVPHILTRIDISSLT 289 (420)
T ss_pred cccccchhhhHHHHH-HHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHhhccccccccccCHHHHHHhCCccHHH
Confidence 111111112222222 2233333344566778999999998888777665534443321 12356889999999999999
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCCChhHHHHHHHHHhh
Q 040250 247 FFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCAST 326 (395)
Q Consensus 247 ~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~~~ 326 (395)
+|+|+|+++++++++|..+++++++.+..++. ...+.++++|+++||+|.+++++|+... +...+.|+++++|+|+
T Consensus 290 fF~GlFilvg~l~~~G~l~~la~~l~~~~~~~-~~~~~s~i~S~~IdNVP~va~~i~l~~~---~~~~~~w~aLalga~l 365 (420)
T TIGR00775 290 FFIGILLAVNALSLLGYLEDVSNVMDTQFSRN-WAAVMVGLLSSVLDNVPLVAATLGMYPL---PMSDGLWKLIAYTAGT 365 (420)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcc-hHHHHHHHHHHHhccHHHHHHHHHhccc---cCchHHHHHHHHHHCc
Confidence 99999999999999999999999998765433 3478888999999999999999999743 2235789999999999
Q ss_pred ccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 327 GGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVN 375 (395)
Q Consensus 327 gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~ 375 (395)
|||+|++||.+|++..+.++.+|..|+|+--...++.+..++.++....
T Consensus 366 GGn~tlIGS~Anvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (420)
T TIGR00775 366 GGSILIIGSAAGVALMGAEKVQFTWYFKHLSWIALASYFGGLVLYFICE 414 (420)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888888876665545588888888888776654
No 3
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-47 Score=370.83 Aligned_cols=348 Identities=23% Similarity=0.321 Sum_probs=282.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Q 040250 15 SAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL---- 87 (395)
Q Consensus 15 ~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l---- 87 (395)
....+|++.+++|+|+++..++++|+||+.|.|+. +++++++++.+.+.++++|++.+|++++++++|++.++
T Consensus 52 ~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~~~v~~s~g~~~~L~~~l~ll~a~~SA~l~N~tt~LlltPivl~~~~~~ 131 (424)
T COG1055 52 IGIDWNVILLLLGMMIIVLLLDESGFFEWLAIKMVKRSKGSGLKLLLLLVLLGALLSAFLDNDTTALLLTPIVLAVARAL 131 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccceeehhhhHHHHHHHHc
Confidence 34678999999999999999999999999999986 57799999999999999999999999999999998665
Q ss_pred CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhc--cccccC
Q 040250 88 VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEV--NRKGQE 164 (395)
Q Consensus 88 ~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~--~~~~~~ 164 (395)
+.+ +. .+++.+++++|+||..||+|||+|++++...|++|.||...+.||.++++++...+.+++ |++ +++.++
T Consensus 132 ~~~-~~--p~l~~~~f~aN~gg~~t~iGdp~niii~~~~gisF~~f~~~m~~p~l~~li~~~~vl~~~~~~~~~~~~~~~ 208 (424)
T COG1055 132 GVN-PV--PFLIAEVFIANIGGLATPVGDPPNIIIASAAGISFNDFLANMFPPSLISLIATLVVLYLLFRRKVIPERYDD 208 (424)
T ss_pred CCC-cc--HHHHHHHHHHcccccccccCChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 222 12 347899999999999999999999999999999999999999999999988877776543 321 222222
Q ss_pred CcccccccccCCchhHHHHHHHhHH-HHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCch
Q 040250 165 SSNVLASEQMAPRGQLVSTVGTGAL-IFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQ 243 (395)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~ 243 (395)
.++.++++..++|+.......+..+ ++....++..|+++..+++.++.++.+.... +++.+.++..+++||+
T Consensus 209 ~~~~~~~~ai~~~~l~~~~~~vl~~vli~f~~~~~~~i~~~~val~~a~ill~~~~~-------~~~~~~~~il~~v~W~ 281 (424)
T COG1055 209 LLLLDPREAIRDRALFKLSLVVLALVLIAFLLLPFLGIPVSLVALVGAAILLLLARL-------SPRESVNKILRGVEWS 281 (424)
T ss_pred hcccChhcccccHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHhcc-------CcchhHHHhhhcCChH
Confidence 2222333444555455554444333 3445677788999999999998887666531 1222345599999999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCc-----hhHHHHHHHHHHHHhcCHHHHHHHhhhhcccCCC-C-ChhH
Q 040250 244 VPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPN-----IDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLP-Q-DSEF 316 (395)
Q Consensus 244 ~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~-----~~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~-~-~~~~ 316 (395)
+++|++|+|+++++++++|+.+.+++.+....++ .....++++++|+++||.|.++++.|+......+ . ..+.
T Consensus 282 ~l~Ff~Glfi~V~gl~~~Gv~~~la~~l~~~~~~~~~~~~~~~~~~s~~lSsv~~NvP~vl~~~~~i~~~~~~~~~~~~l 361 (424)
T COG1055 282 TLLFFIGLFIVVGGLENAGVTEDLASVLKALSSGGLAAATLGIGWLSGLLSSVLDNVPTVLTFAPIIKGLAANGMGKEPL 361 (424)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccccchHHH
Confidence 9999999999999999999999999999987653 2368899999999999999999999998742211 1 1368
Q ss_pred HHHHHHHHhhccccccccchhhHHHhcc-----ccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 317 WQLIAYCASTGGSMLIIGSAAGVAFMGM-----EKVDFFWYFRKVSGFAFAGYAAGIAAYL 372 (395)
Q Consensus 317 ~~~l~~~~~~gg~~tpigs~an~i~~~~-----~~~~~~~~~k~g~p~~lv~~~~~~~~~~ 372 (395)
|+++++++++|||+||+||.+|.++.+. .++++.||+|+|.+.+++.++++..+.|
T Consensus 362 w~A~a~Ga~lGgnlT~IGs~Anlv~~~i~~~~g~~is~~~f~k~g~~i~~~~l~i~~~~l~ 422 (424)
T COG1055 362 WLALALGADLGGNLTPIGSAANLVWLGVLERKGVPISFGEFFKVGIIVTLPSLFITLLYLY 422 (424)
T ss_pred HHHHHHhCccccchhhhhhHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 3599999999999999999998887554
No 4
>PLN00136 silicon transporter; Provisional
Probab=100.00 E-value=3.1e-44 Score=360.80 Aligned_cols=344 Identities=18% Similarity=0.213 Sum_probs=263.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--
Q 040250 13 RASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL-- 87 (395)
Q Consensus 13 ~~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l-- 87 (395)
|+++.+ ++++++++|+|+++++++|+|++|++++++.+ ++++++++.++++++++|++++|+++++++.|++.++
T Consensus 56 ~a~~~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~~~~~~ll~~l~~~ta~lSafl~N~~t~llm~Piv~~la~ 135 (482)
T PLN00136 56 DAYASIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQGGRDLLCRVCVVTALASALFTNDTCCVVLTEFVLELAA 135 (482)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 444444 67999999999999999999999999999863 5688889999999999999999999999999998665
Q ss_pred --CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hh-cccccc
Q 040250 88 --VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SE-VNRKGQ 163 (395)
Q Consensus 88 --~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~-~~~~~~ 163 (395)
+.+ +. .+++++++++|+||..||+|||+|+++++..+++|.||+.++.|+.++++++.+.++++. |+ .+.+.+
T Consensus 136 ~~~~~-p~--~~ll~la~aAn~Gg~~TpiG~p~Nlii~~~~~i~F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~ 212 (482)
T PLN00136 136 ERNLP-AK--PFLLALASSANIGSSATPIGNPQNLVIAFNSKITFPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAE 212 (482)
T ss_pred HcCCC-cH--HHHHHHHHHHHHhhhhhhccccchheeeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 222 22 346899999999999999999999999988899999999999999988877776655432 32 211000
Q ss_pred C---------Ccc-c-------------------------c------ccc-c----------cCCchhHHHHHHHhHHHH
Q 040250 164 E---------SSN-V-------------------------L------ASE-Q----------MAPRGQLVSTVGTGALIF 191 (395)
Q Consensus 164 ~---------~~~-~-------------------------~------~~~-~----------~~~~~~~~~~~~~~~~~~ 191 (395)
+ .++ . . +.+ + .++++.........++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ll~~~~~~~v~~- 291 (482)
T PLN00136 213 LSVDGKQMEAVEEGRSPASAKSTKQQSPALLQAGLNGDGNGDMSSMMSENISTKHPWFMQCTEHRRKLFLKSFAYVVTV- 291 (482)
T ss_pred hcccchhhhhhhcccccchhhhhhhhhhhhhhccccccccchhHHHhhccccccccccccchhccHHHHHHHHHHHHHH-
Confidence 0 000 0 0 000 0 11222222222211111
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 040250 192 VPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYL 271 (395)
Q Consensus 192 ~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l 271 (395)
........|+|+.++++.++.++.+.+ +.+.+|+.+++||++++|++|+|+++++++++|+.+++++.+
T Consensus 292 ~~l~~f~~g~p~~~iAl~~a~~lll~~-----------~~~~~~~l~~v~W~~Llff~GlFilv~~l~~tGl~~~i~~~l 360 (482)
T PLN00136 292 GMVVAYMVGLNMSWTAITTAIALVVVD-----------FRDAEPCLDTVSYSLLVFFSGMFITVSGFNKTGLPGAIWNFM 360 (482)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhc-----------CCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 111122378999999998887765543 247789999999999999999999999999999999999999
Q ss_pred HhhcCch-----hHHHHHHHHHHHHhcCHHHHHHHhhhhccc--CCCC--ChhHHHHHHHHHhhccccccccchhhHHHh
Q 040250 272 DAHIPNI-----DLIASAIGVVSAVIDNVPLVAATIGMYDLT--SLPQ--DSEFWQLIAYCASTGGSMLIIGSAAGVAFM 342 (395)
Q Consensus 272 ~~~~~~~-----~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~--~~~~--~~~~~~~l~~~~~~gg~~tpigs~an~i~~ 342 (395)
.+..++. ..+.++++++|+++||+|++++|.|++... +.+. ..+.|+++++++|+|||+||+|+++|+++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~s~~lS~~isNvp~~~~m~p~v~~~~~~~~~~~~~~~~~~la~ga~lGGn~TliGs~ANli~~ 440 (482)
T PLN00136 361 APYSKVNSVGGISVLSVIILLLSNLASNVPTVLLMGDEVAAAAALISPAAVTRSWLLLAWVSTVAGNLSLLGSAANLIVC 440 (482)
T ss_pred HHhcCCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccCCcccchHHHHHHHHHhhccceeeccchhHHHHH
Confidence 8765433 246788999999999999999999988632 1222 135788899999999999999999999997
Q ss_pred cc--------ccccHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 343 GM--------EKVDFFWYFRKVSGFAFAGYAAGIAAY 371 (395)
Q Consensus 343 ~~--------~~~~~~~~~k~g~p~~lv~~~~~~~~~ 371 (395)
+. .+++|.||+|+|+|+++++++++..++
T Consensus 441 ~~~~~~~~~G~~isf~~f~k~G~P~~l~~~~i~~~~~ 477 (482)
T PLN00136 441 EQARRAPRNAYDLTFWQHIVFGVPSTLIVTAIGIPLI 477 (482)
T ss_pred HHHHHhhccCCcccHHHHHHHhHHHHHHHHHHHHHHH
Confidence 64 149999999999999999999987654
No 5
>PRK15445 arsenical pump membrane protein; Provisional
Probab=100.00 E-value=3.4e-43 Score=352.00 Aligned_cols=348 Identities=14% Similarity=0.106 Sum_probs=265.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCC
Q 040250 18 VSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL----VPP 90 (395)
Q Consensus 18 ~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l----~~~ 90 (395)
.+|++++++|+++++++++|+|++||+++++. ++++++++..+++.++++|++++|++++++++|++..+ +.+
T Consensus 52 ~~~~i~l~~g~~vi~~~l~~tGl~~~ia~~~~~~~~~~~~~l~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~i~~~~g~~ 131 (427)
T PRK15445 52 VWNATLTFIAIIIISLLLDEAGFFEWAALHVARWAKGNGRKLFVYIVLLGAAVAALFANDGAALILTPIVLAMLLALGFS 131 (427)
T ss_pred cccHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence 37899999999999999999999999999986 45788999999999999999999999999999998554 322
Q ss_pred ChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCcccc
Q 040250 91 SEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSNVL 169 (395)
Q Consensus 91 ~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~ 169 (395)
++....+++..++++|.|+..+|+|+|+|++..++.+++|.||+.+..|+.++..++.+.+++++ ||+.++..+.++.+
T Consensus 132 ~~~~~~~~~~~~~~a~~~~~~~~ig~~~N~i~~~~~~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r~~~~~~~~~~~~~ 211 (427)
T PRK15445 132 KKATLAFVMAAGFIADTASLPLVVSNLVNIVSADYFGIGFAEYASVMVPVNLVSLAASLLVLWLYFRKDIPKTYDLELLK 211 (427)
T ss_pred cccchHHHHHHHHHhcccccccccCCchHhhhhccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCccccccccc
Confidence 21112346788899999999999999999988777789999999999999998888877776554 54432211111111
Q ss_pred cc-cccCCchhHHHHHHH-hHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHH
Q 040250 170 AS-EQMAPRGQLVSTVGT-GALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLF 247 (395)
Q Consensus 170 ~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~ 247 (395)
++ +..+++++......+ +..++.+...+..|++.+.++++++.++++... +++..+++|..|++||++++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~va~~~a~ll~~~~~-------~~~~~~~~~~~~~v~W~~l~~ 284 (427)
T PRK15445 212 EPASAIKDPALFKLGWIVLALLLVGYFVLEPLGIPVSAIAGVGALILLLVAR-------RGHAINTKKVLKGAPWQIVIF 284 (427)
T ss_pred ChhhhccCHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHh-------ccCCCCHHHHHHhCChHHHHH
Confidence 11 112223332332222 223334455667789988888877766554431 124578999999999999999
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc-cCCCCC-hhHHHHH
Q 040250 248 FLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVSAVIDNVPLVAATIGMYDL-TSLPQD-SEFWQLI 320 (395)
Q Consensus 248 ~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~-~~~~~~-~~~~~~l 320 (395)
++|++++++++++||+.+|+++.+.+..+... .+.++++++|||+||+|+++++.|.... ...+.+ .+.++++
T Consensus 285 ~~g~~~l~~al~~tG~~~~la~~l~~~~~~~~~~~~~~~~~~s~~lS~~~sN~p~~~~~~~~i~~~~~~~~~~~~l~~al 364 (427)
T PRK15445 285 SLGMYLVVYGLRNAGLTDYLAGVLNYLADQGLFAATLGTGFLAAFLSSVMNNMPTVLIGALAIDGSNATGVIKEAMIYAN 364 (427)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 99999999999999999999999976543321 4678899999999999999876555543 222222 3567889
Q ss_pred HHHHhhccccccccchhhHHHhcc---c--cccHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 321 AYCASTGGSMLIIGSAAGVAFMGM---E--KVDFFWYFRKVSGFAFAGYAAGIAAYL 372 (395)
Q Consensus 321 ~~~~~~gg~~tpigs~an~i~~~~---~--~~~~~~~~k~g~p~~lv~~~~~~~~~~ 372 (395)
++++|+||++||+|+++|+++.+. + +++|+||+|+|+|.++++++++...++
T Consensus 365 ~~ga~~gg~~T~iGs~an~i~~~~~~~~g~~i~f~~f~k~G~~~~~~~~~~~~~~l~ 421 (427)
T PRK15445 365 VIGSDLGPKITPIGSLATLLWLHVLAQKGVKISWGYYFKVGIIITLPVLLVTLLALA 421 (427)
T ss_pred HHhcccCcccchhhhHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654 2 467999999999999999998877664
No 6
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=100.00 E-value=3.8e-42 Score=343.68 Aligned_cols=349 Identities=17% Similarity=0.136 Sum_probs=259.8
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040250 12 SRASAEV---SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVR 85 (395)
Q Consensus 12 ~~~~~~~---~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~ 85 (395)
+|+++++ +|++++++|+++++++++|+|+.||+++++. +++++++.+.+++.++++|++++|+++++++.|++.
T Consensus 42 ~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~l~~~~~~~~~~l~~~~~~~~~~ls~~~sn~a~~~~~~Pi~~ 121 (416)
T cd01118 42 HDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAALAARWARGSGRKLFTLIVLLGAAVTAFFANDGTALILTPIVI 121 (416)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555554 7899999999999999999999999999986 468899999999999999999999999999999986
Q ss_pred Hh----CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccc
Q 040250 86 KL----VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNR 160 (395)
Q Consensus 86 ~l----~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~ 160 (395)
++ +.+++..+.+++..++++|.||..||+|+|+|.++.+..+++|.||+.+..|+.+++.++.+.+.+++ |++.+
T Consensus 122 ~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~~~n~i~~~~~~i~~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~ 201 (416)
T cd01118 122 ALLRALGAKKNRTLPFLYACAFIADAASLPLPISNLVNIVTAGYFGIGFTEYAALMFLPSIVSILATYVVLYLFFRRALP 201 (416)
T ss_pred HHHHHcCCCcccccHHHHHHHHHHcccccccccCCchHHHhHhccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 54 32221112345678899999999999999999998888899999999999999998887777666544 44322
Q ss_pred cccCCccc-ccccccCCchhHHHHHHHhHHHH-HHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc
Q 040250 161 KGQESSNV-LASEQMAPRGQLVSTVGTGALIF-VPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS 238 (395)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 238 (395)
+..+.++. +++.+.++|+.....+.++...+ .+...+..+.++...+.....++++..+ .++.++++|..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~ 274 (416)
T cd01118 202 KRLETASVKKPSLAIKDPLLFGLAWTLLVLLVVSAFGVDILLIPPSFIAGVLALIFLLLAR-------RGGAINPLKVLK 274 (416)
T ss_pred cccccccccCccccccchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-------CCCCCCHHHHHH
Confidence 21111111 11112222222222222222211 2333344555444333222222222221 123468999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCCC
Q 040250 239 RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQD 313 (395)
Q Consensus 239 ~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~~ 313 (395)
++||+++++++|+|+++++++++|+.+|+++.+.+..+... .+.++++++|||+||+|++.++.|+... +.+
T Consensus 275 ~v~w~~ll~f~g~f~l~~al~~tG~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vls~~isNvp~~~l~~p~~~~---~~~ 351 (416)
T cd01118 275 EAPWGVLLFSLGLYVVVFGLKNAGLTAILADLLNWLVSQGLLAAILGVGLLAAFLSNVMNNLPAVLIGALALAA---GHA 351 (416)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhc---ccc
Confidence 99999999999999999999999999999999987654322 3567899999999999999999998753 222
Q ss_pred -hhHHHHHHHHHhhccccccccchhhHHHhcc-----ccccHHHHHHHHHHHHHHHHHHHHHH
Q 040250 314 -SEFWQLIAYCASTGGSMLIIGSAAGVAFMGM-----EKVDFFWYFRKVSGFAFAGYAAGIAA 370 (395)
Q Consensus 314 -~~~~~~l~~~~~~gg~~tpigs~an~i~~~~-----~~~~~~~~~k~g~p~~lv~~~~~~~~ 370 (395)
.+.|+++.+++|+||++||+||++|+++.+. ++++++||+|+|+|.++++++++...
T Consensus 352 ~~~~~~~l~~g~~~gg~~t~~gs~an~i~~~~~~~~~~~~~~~~f~k~g~~~~~~~l~~~~~~ 414 (416)
T cd01118 352 PEALVYANLIGVDLGPKLTPIGSLATLLWLHVLRRKGIRVSWGYYLKVGLIVTPPVLVVTLAA 414 (416)
T ss_pred cHHHHHHHHHhcccCcccchHHHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999998653 36999999999999999998888654
No 7
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=100.00 E-value=5.3e-42 Score=338.47 Aligned_cols=337 Identities=15% Similarity=0.103 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---------
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL--------- 87 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l--------- 87 (395)
+++++++++| +++.++++|++++++.|+.+ ++++++.+.+++.++++|+|+||++++++++|+...+
T Consensus 94 ~~vIlLL~fM--Vv~i~~~~gll~~v~~kil~~~~s~~~Lll~~~l~aA~LSAFLdN~Tvvav~iPV~l~~~~~~~~~a~ 171 (513)
T PRK09547 94 LEVLLLLMFM--VAGIYFMKQLLLFIFTKLLLSIRSKMLLSLAFCLAAAFLSAFLDALTVIAVVISVAVGFYGIYHRVAS 171 (513)
T ss_pred HHHHHHHHHH--HHHHHHHccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHhhhhHHHHh
Confidence 4566666554 99999999999999999863 5799999999999999999999999999999997621
Q ss_pred ----------CC--------------CChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHH
Q 040250 88 ----------VP--------------PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAV 143 (395)
Q Consensus 88 ----------~~--------------~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v 143 (395)
.+ ++|+-+.++++.++++|+||.+|++|+|||+++++..+++|.||+..+.|+++.
T Consensus 172 ~~~~~~~~~~~~~~~i~~~~~~~~~~p~pfL~~Llmpla~asnlGGv~TLIG~PqNLiIas~~g~~F~~F~~~~apv~lp 251 (513)
T PRK09547 172 GKGFSEDHDLTDDSHIDELYREDLEQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQAGWHFGEFFLRMAPVTVP 251 (513)
T ss_pred ccccccccccccccccchhhhhhhcccchHHHHHHHHHHHHHHhhhheeccCCcHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 11 223334456789999999999999999999999988799999999999887775
Q ss_pred HHHHHHHHHH-------hh-h-hccccccC-Cc----ccccccccCCchhH-HHHHHHhHHHHHHHhhhhcCCChHHHHH
Q 040250 144 SLAVPLALLS-------LT-S-EVNRKGQE-SS----NVLASEQMAPRGQL-VSTVGTGALIFVPVFKALTGLPPYMGIL 208 (395)
Q Consensus 144 ~~~~~~~~~~-------~~-~-~~~~~~~~-~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~a~ 208 (395)
.++..+..+. +. | +.+++.++ .+ +.+++...++|++. ..+++.+.+++. +. +++..+++
T Consensus 252 vli~gll~~~l~~~~~~f~y~~~l~~~~~~~l~~~~~~~~~~~~~~d~~~L~~~~l~~~~li~~-f~-----l~~a~VaL 325 (513)
T PRK09547 252 VLICGLLTCLLVEKFRWFGYGAKLPEKVRQVLQDYDDQERAKRTRQDKAKLIVQALIGVWLIVA-LA-----LHLAEVGL 325 (513)
T ss_pred HHHHHHHHHHHHHhCcEEeeccccchhHHHHhhhhhhccCcccccccHHHHHHHHHHHHHHHHH-HH-----HhHHHHHH
Confidence 5554444431 11 2 11211111 11 11222333455555 444443332222 11 56778889
Q ss_pred HHHHHHHHHHHhhhccchhhccCCHHHHhcc-----cCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCc--hhHH
Q 040250 209 LGLGVLWILTDAIHYGESERQKLKVPQALSR-----INMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPN--IDLI 281 (395)
Q Consensus 209 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~-----v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~--~~~~ 281 (395)
+|+.++++... .++.+.++.+++ +||+++ ++|+|+++++++++|+.+.+++++.+..++ ...+
T Consensus 326 iga~vill~~~--------~~~~~~e~~l~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~~~~~~~~~~ 395 (513)
T PRK09547 326 IGLSVIILATA--------FTGVTDEHAIGKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQASEHAQLSLF 395 (513)
T ss_pred HHHHHHHHhhc--------ccCCCHHHHHhhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCChHHHH
Confidence 88887766641 123566888888 999999 999999999999999999999999998665 3468
Q ss_pred HHHHHHHHHHhcCHHHHHHHhhhhccc-CCCC-----ChhHHHHHHHHHhhccccccccchhhHHHh-cc----ccccHH
Q 040250 282 ASAIGVVSAVIDNVPLVAATIGMYDLT-SLPQ-----DSEFWQLIAYCASTGGSMLIIGSAAGVAFM-GM----EKVDFF 350 (395)
Q Consensus 282 ~~~~~~lS~~i~N~p~~~~~~pi~~~~-~~~~-----~~~~~~~l~~~~~~gg~~tpigs~an~i~~-~~----~~~~~~ 350 (395)
++.++++|+++||+|++++++|++... ..|. -.++|+++..++|+|||.||+|+++|++.. +. .+++|+
T Consensus 396 ~~~sgllSaiiDNVp~~~~~ip~v~~~~~~g~~~~~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~~~~~~~g~~isf~ 475 (513)
T PRK09547 396 YIANGLLSSISDNVFVGTVYINEAKAALESGAISRKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYG 475 (513)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHhCCCcccHH
Confidence 899999999999999999999998641 2222 137899999999999999999999999887 54 479999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040250 351 WYFRKVSGFAFAGYAAGIAAYLA 373 (395)
Q Consensus 351 ~~~k~g~p~~lv~~~~~~~~~~~ 373 (395)
||+|+|+|+++++.+++.++...
T Consensus 476 ~~~k~glP~tlv~~~v~~~~v~~ 498 (513)
T PRK09547 476 RMVWMALPYTIVLTLVGLLAVEF 498 (513)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875544
No 8
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=100.00 E-value=1.3e-40 Score=326.84 Aligned_cols=357 Identities=17% Similarity=0.173 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 040250 9 SELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVR 85 (395)
Q Consensus 9 ~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~ 85 (395)
|++.+.....+|...++++++++++.++|+|+||++|.++. |+|+++++..+.+++++.+++.+||+++.+++|++.
T Consensus 42 ~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A~~~a~~a~g~~~rLf~~v~ll~~~vTaflsND~talilTPivl 121 (423)
T PF02040_consen 42 SDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLALHAARWARGSGRRLFLLVYLLGAVVTAFLSNDATALILTPIVL 121 (423)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44555556789999999999999999999999999999985 689999999999999999999999999999999973
Q ss_pred ----HhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhc-c
Q 040250 86 ----KLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEV-N 159 (395)
Q Consensus 86 ----~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~-~ 159 (395)
+.+.+++.....++.+.+.||.+|...|++|++|+++.++.+++|.+|..+|.+|.+++...++.+++++ |++ +
T Consensus 122 a~~~~~~~~~~~~lp~l~a~~~iAntASl~LpvSNltNLv~~~~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr~~l~ 201 (423)
T PF02040_consen 122 ALARRLGLNPKPPLPFLFACAFIANTASLLLPVSNLTNLVAADAFGISFLEYAAVMALPSLAAIAVTYLVLWLYFRRDLP 201 (423)
T ss_pred HHHHHcCCCcccchHHHHHHHHHhhhhhccccccCcHHHHHHHccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3432221112347899999999999999999999999999999999999999999999988887776543 433 3
Q ss_pred ccccCCcccccccccCCchhHHHHHHHhH-HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc
Q 040250 160 RKGQESSNVLASEQMAPRGQLVSTVGTGA-LIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS 238 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 238 (395)
++.+..+..++++..+|++.......+.. +....+..+..|+|.+.++..++.++..... + ++..+.++..|
T Consensus 202 ~~~~~~~~~~p~~~i~d~~~~~~~~~vl~~ll~~~~~~~~~~ip~~~va~~~a~ill~~~~---r----~~~~~~~~~l~ 274 (423)
T PF02040_consen 202 KRYDLSELPPPKSAIKDPRLFRLSLVVLALLLAGFFVASFLGIPVSAVAGAGAVILLALAR---R----SRKISPKRVLR 274 (423)
T ss_pred cccchhcccCccccccchhHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHH---h----cccccHHHHHH
Confidence 33322111122334455555544433332 2333556677899987776666554433331 1 23467788999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch-----hHHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCC-
Q 040250 239 RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI-----DLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQ- 312 (395)
Q Consensus 239 ~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~-----~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~- 312 (395)
++||+.+.|..|+|+++++++++|+.+.+++.+....+.. ..+.++++++||++||.|.+.+..+-....+.+.
T Consensus 275 ~~pW~il~F~~gLfvvV~~L~~~Gl~~~l~~~l~~~~~~~~~~a~~~~g~~~A~lsnl~NNLPa~Li~~~ai~~~~~~~~ 354 (423)
T PF02040_consen 275 EVPWSILPFVLGLFVVVEGLENTGLTELLARLLGTAASQGLLAAILGMGFLSAILSNLMNNLPAVLIGALAIQAAHAPGL 354 (423)
T ss_pred hCCchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhcccCCch
Confidence 9999999999999999999999999999999998754322 2467889999999999998865544332211111
Q ss_pred -ChhHHHHHHHHHhhccccccccchhhHHHhcc-----ccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 313 -DSEFWQLIAYCASTGGSMLIIGSAAGVAFMGM-----EKVDFFWYFRKVSGFAFAGYAAGIAAYL 372 (395)
Q Consensus 313 -~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~-----~~~~~~~~~k~g~p~~lv~~~~~~~~~~ 372 (395)
....+++..+|+|+|+++||+||.+|++|.+. .+++++||+|.|++.+...++++...++
T Consensus 355 ~~~~~~~A~lIG~nlGp~lTp~GSLATLLWl~~L~~~Gi~is~~~f~k~G~vlt~p~Ll~al~~L~ 420 (423)
T PF02040_consen 355 VREALIYALLIGVNLGPNLTPIGSLATLLWLHILRRKGIKISWGEFLKLGLVLTPPVLLAALLALW 420 (423)
T ss_pred hHHHHHHHHHHhcccCcccchHHhHHHHHHHHHHHHCCCCCCHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 12456889999999999999999999999864 3699999999999988888777765544
No 9
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=100.00 E-value=9.9e-41 Score=330.15 Aligned_cols=337 Identities=21% Similarity=0.268 Sum_probs=252.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-
Q 040250 13 RASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLV- 88 (395)
Q Consensus 13 ~~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l~- 88 (395)
|+++++ ++++++++|+++++++++|+|++||+++++. +++++++.+.+++.++++|++.+|+++++++.|++..+.
T Consensus 34 ~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~~~~~l~~~~~~~~~~ls~~~~n~~~~~~~~Pi~~~l~~ 113 (384)
T cd01117 34 DAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAGSPRRLLFLLVLLSGILSALLTNDTACLVFTPIVLELAR 113 (384)
T ss_pred HHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444 7799999999999999999999999999976 357888999999999999999999999999999986651
Q ss_pred --CCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCC
Q 040250 89 --PPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQES 165 (395)
Q Consensus 89 --~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~ 165 (395)
+.++ +.+++..++++|+||..||+|+++|+++.+..+++|.||+.+..|+.+++.++.+++.+++ |++.++.++.
T Consensus 114 ~~~~~~--~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 191 (384)
T cd01117 114 VAGLPP--IPLLLALATAANIGSAATPIGNPQNLLIASESGISFPFFLAAMAPLALLGLLLLLILLLVLFPGELKGLPLD 191 (384)
T ss_pred HcCCCc--hhHHHHHHHHHHcccccccCCCchhhhhhcCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1112 2356789999999999999999999998888899999999999999998887776666544 4432221111
Q ss_pred cccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCCh-HHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchH
Q 040250 166 SNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPP-YMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQV 244 (395)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~ 244 (395)
++.++.++.+++++....+.+......+.. ..+..+ +..++.++ ++++.. + .++||..+++||++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~ll~~~----------~-~~~~~~l~~i~w~~ 257 (384)
T cd01117 192 KATKEEGVGARKLAVKLLVLILLLLVAFLA--LLGVIPLWTAALVAA-VLLLLT----------R-LKPRRVLKKVDWGL 257 (384)
T ss_pred cccchhhcccHHHHHHHHHHHHHHHHHHHH--HhCccHHHHHHHHHH-HHHHHh----------c-CCHHHHHHhCCchH
Confidence 111122233332222221121111111111 123433 33333333 333332 1 57889999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCCChhHHHHHHHHH
Q 040250 245 PLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCA 324 (395)
Q Consensus 245 l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~ 324 (395)
+++++|+|+++++++++|..+++++.+.. ......+.++++++|+|+||+|+++++.|+.... ++..++++++++
T Consensus 258 ll~f~g~f~l~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~lS~~isN~p~~~~~~pi~~~~----~~~~~~~l~~~~ 332 (384)
T cd01117 258 LLFFAGLFILVGGFAQGLPLEGLSRLLPL-LDSVLSLFLVSIGLSQLISNVPAVLLLLPFLPSA----DEKDWLLLAAGS 332 (384)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----ccHHHHHHHHHh
Confidence 99999999999999999999999987765 2233467899999999999999999999987532 345678899999
Q ss_pred hhccccccccchhhHHHhccc-----cccHHHHHHHHHHHHHHHHHHHHHH
Q 040250 325 STGGSMLIIGSAAGVAFMGME-----KVDFFWYFRKVSGFAFAGYAAGIAA 370 (395)
Q Consensus 325 ~~gg~~tpigs~an~i~~~~~-----~~~~~~~~k~g~p~~lv~~~~~~~~ 370 (395)
++|+++||+||++|+++++.. +++++||+|+|+|.+++.+++++++
T Consensus 333 ~~gg~~tpigs~an~i~~~~~~~~g~~~~~~~~~k~g~~~~i~~~~~~~~~ 383 (384)
T cd01117 333 TIAGNLTLLGSAANLIVAEAAERRGVRLSFGEFLKYGVPLTLLTAAIGILW 383 (384)
T ss_pred hcccccchhhHHHHHHHHHHHHHCCCCCcHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999999863 5799999999999999888877653
No 10
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=100.00 E-value=3.2e-40 Score=330.96 Aligned_cols=344 Identities=15% Similarity=0.089 Sum_probs=256.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----C
Q 040250 16 AEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL----V 88 (395)
Q Consensus 16 ~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l----~ 88 (395)
..-++++++++|+++++++++|+|++||+++++. ++++|++.+.+++.++++|++++|+++++++.|++.++ +
T Consensus 51 ~~~~~~l~~~~g~~ii~~~l~~tGl~~~ia~~l~~~~~~~~~~l~~~~~~~~~~ls~~~~n~~~~~i~~Pi~~~l~~~~~ 130 (429)
T TIGR00935 51 GIVWNATATFFAVIIISLILDETGFFEWAAVHAYRLSNGRGWLLFTFICLLGAVVSAFFANDGAALILTPIVIAMCEVLG 130 (429)
T ss_pred hhchhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHHHhC
Confidence 3347899999999999999999999999999986 46899999999999999999999999999999998654 3
Q ss_pred CCChhhHHHHHHHHHHhhhccccccccccchhhhhccC---CCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccC
Q 040250 89 PPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG---QISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQE 164 (395)
Q Consensus 89 ~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~---~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~ 164 (395)
.+ |. + ..+..++++|+||..||+|+++|++..+.. +++|.||+.+..|+.++..++.+...++. |++.++.++
T Consensus 131 ~~-~~-~-~~~~~~~~a~~gg~~t~iG~~~n~i~~~~~~~~~i~f~~f~~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~ 207 (429)
T TIGR00935 131 FN-PR-T-ILAFVVAAGFIADTASLPLIVSNLVNIVSADYFGLGFAEYTSHMLPGNILVLVATLLVLRLYFRNDIPKVYD 207 (429)
T ss_pred CC-Cc-c-hHHHHHHHHHHhhHHhcCCCCchhhhhhcccccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCcccc
Confidence 22 22 1 246799999999999999999999876533 79999999999999998887777666553 444322211
Q ss_pred Cc-ccccccccCCchhHHHHHHHhH-HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCc
Q 040250 165 SS-NVLASEQMAPRGQLVSTVGTGA-LIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINM 242 (395)
Q Consensus 165 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w 242 (395)
.+ +.+++++.+++++......+++ ++..+..++..+++.+..+..++.+..+... ..+..|+||+.+++||
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~l~~-------~~~~~~~~~~~~~i~w 280 (429)
T TIGR00935 208 LELLLAPKYAIKDPALFKKCWIVLVFLLVGFFVLEFLGIPVSAIAWIAALGAIALAI-------LADAIDTEKVLRGAPW 280 (429)
T ss_pred hhhccCccccccCHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH-------hcCCCCHHHHHHhCCc
Confidence 11 1112233344433333333322 2334556666777776555544433322211 0135789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc----cCCCCC
Q 040250 243 QVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVSAVIDNVPLVAATIGMYDL----TSLPQD 313 (395)
Q Consensus 243 ~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~----~~~~~~ 313 (395)
+++++++|+|++++++++||+.+|+++.+....+... .+.++++++|+++||+|+ ++|+... .+.|.+
T Consensus 281 ~~l~~~~g~f~l~~~l~~tG~~~~la~~~~~~~~~~~~~~~~~~~~~~~~ls~~~sN~~~---~~pi~~~i~~~~~~g~~ 357 (429)
T TIGR00935 281 QIVLFSAGMYLVVEGLKNLGLTEYLGGILNVLEDRGLWAAILGTGFVSAFLSSIMNNMPT---MLVGALSIDQSSATGLP 357 (429)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHccHHH---HHHHHHHHhhccccccc
Confidence 9999999999999999999999999995543322221 356789999999999993 6776532 123443
Q ss_pred -hhHHHHHHHHHhhccccccccchhhHHHhcc---c--cccHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 314 -SEFWQLIAYCASTGGSMLIIGSAAGVAFMGM---E--KVDFFWYFRKVSGFAFAGYAAGIAAYL 372 (395)
Q Consensus 314 -~~~~~~l~~~~~~gg~~tpigs~an~i~~~~---~--~~~~~~~~k~g~p~~lv~~~~~~~~~~ 372 (395)
.+.++++++++++||++||+|+++|+++.+. + +++++||+|+|+|.++++.+++.++.+
T Consensus 358 ~~~~~~~l~~~~~~gg~~tp~gs~anli~~~~~~~~g~~~~~~df~k~g~~~~~~~~~i~~~~l~ 422 (429)
T TIGR00935 358 KEPMVYANVIGADLGPKITPIGSLATLLWLHVLEQKGYKISWGYYFRTGIPMTIPVLFVTLAYLL 422 (429)
T ss_pred hhHHHHHHHHHHhcCcccCccccHHHHHHHHHHHHCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999998652 2 368899999999999999999987665
No 11
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=326.93 Aligned_cols=346 Identities=24% Similarity=0.354 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHH---HHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCC
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTD---NITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL-----VPP 90 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~---~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l-----~~~ 90 (395)
++++.+++|||++...++|+|+||++|. |+.||++|.++..+++++++.|++.+|++++++++|++.|+ .++
T Consensus 232 ~etL~LLfGmMilv~ilseTg~FdYlav~ayriSrG~~w~li~~Lclvtav~Sa~ldN~TtvLLltpv~IRLcevm~L~p 311 (685)
T KOG2639|consen 232 FETLGLLFGMMILVAILSETGVFDYLAVLAYRISRGHVWPLICLLCLVTAVLSAFLDNVTTVLLLTPVVIRLCEVMNLDP 311 (685)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhcCCeEEEEecHHHHHHHHHhcCCC
Confidence 5799999999999999999999999985 56789999999999999999999999999999999998776 133
Q ss_pred ChhhHHHHHHHHHHhhhccccccccccchhhhhccC-----CCChHHHHHHhHHHHHHHHHHHHHHHHhh---hhc-ccc
Q 040250 91 SEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG-----QISTLPTMKSLFIPSAVSLAVPLALLSLT---SEV-NRK 161 (395)
Q Consensus 91 ~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~-----~isf~~~~~~~~p~~~v~~~~~~~~~~~~---~~~-~~~ 161 (395)
+|. ++.++..+|+||+.||+|||||.+++++. |++|.+|...++|..+.+.+.++....+. +++ ..+
T Consensus 312 ~pv----Li~~vi~aNIGga~TPIGdPpNvIIatns~i~~~gv~f~~Ftahm~pgvlla~l~~~~~lrlly~~~~~l~~k 387 (685)
T KOG2639|consen 312 HPV----LIAVVIYANIGGAATPIGDPPNVIIATNSEIPKAGVDFAVFTAHMLPGVLLAMLQTFMYLRLLYWNIEELMVK 387 (685)
T ss_pred Cce----EEEEEEecccccccCcCCCCCcEEEEecceecccCcchhhhhHHHHHHHHHHHHHHhhhHhhheechHHHhcc
Confidence 332 56889999999999999999999987754 67889999888888777777666554332 211 000
Q ss_pred c--c------C---------------Cc-c----------------ccc-----------------------ccccCCch
Q 040250 162 G--Q------E---------------SS-N----------------VLA-----------------------SEQMAPRG 178 (395)
Q Consensus 162 ~--~------~---------------~~-~----------------~~~-----------------------~~~~~~~~ 178 (395)
+ + + ++ + +++ +.+++++-
T Consensus 388 ~~~e~~el~~ei~v~r~~~~~~s~~sk~~envR~~~~~~i~~r~~~lr~r~~~~~~~~~a~~y~~tl~~l~~~~~irnk~ 467 (685)
T KOG2639|consen 388 EPDEEVELKHEIHVWRLAAAQVSPASKEEENVRRTLSAKIRARARSLRERLPTSCNSNPAENYFNTLAELQAKNRIRNKT 467 (685)
T ss_pred CchHHHHHHHHHHHhhcCHhhcCcccchHHHHHHHHHHHHHHHHHHHhhhccccccCCccHHHHhhHHHHhhhcccccHH
Confidence 0 0 0 00 0 000 00111111
Q ss_pred hHHHHHHH--hHH-H-HHHHhhhhc-CCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHH
Q 040250 179 QLVSTVGT--GAL-I-FVPVFKALT-GLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILL 253 (395)
Q Consensus 179 ~~~~~~~~--~~~-~-~~~~~~~~~-~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~ 253 (395)
..+..... +++ . ++-...... |.+..+++++|+.++++... ..|.+..+.+++|++++||+++|+
T Consensus 468 ll~k~~~aL~fviv~F~l~svp~~~~gl~LgW~AIlgA~llLIl~d----------~~D~e~il~rVews~LLFfaalFI 537 (685)
T KOG2639|consen 468 LLIKCLRALWFVIVCFFLQSVPSLHMGLSLGWTAILGAILLLILAD----------IKDIEAILHRVEWSTLLFFAALFI 537 (685)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHhcCCCccHHHHHHHHHHHHHhc----------hhhHHHHHHHhhHHHHHHHHHHHH
Confidence 12221111 111 1 111122233 68888999998876655542 135566788999999999999999
Q ss_pred HHHHHHHhCHHHHHHHHHHhhcCch----------hHHHHHHHHHHHHhcCHHHHHHHhhhhcc----cCCCCC-hhHHH
Q 040250 254 SVSSLEAAGLMRKIGNYLDAHIPNI----------DLIASAIGVVSAVIDNVPLVAATIGMYDL----TSLPQD-SEFWQ 318 (395)
Q Consensus 254 l~~~l~~tG~~~~la~~l~~~~~~~----------~~~~~~~~~lS~~i~N~p~~~~~~pi~~~----~~~~~~-~~~~~ 318 (395)
+.+++++.|+.+|+++...+.+.+. ..+.|.+++.|+|++|+|++..|+++... .++|.+ .|..|
T Consensus 538 ~~e~v~~lGli~~l~dlte~vil~v~e~~~~~vAi~iilw~SAlasafidNipvt~~mVkl~~~lv~~~~~glpl~pliW 617 (685)
T KOG2639|consen 538 LMEAVDKLGLIEWLGDLTEPVILSVGESYRLMVAIVIILWVSALASAFIDNIPVTAIMVKLLTSLVANSAVGLPLQPLIW 617 (685)
T ss_pred HHHHHHhhCHHHHHHHhhhHHhhhcchhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhccccCCCcchHHH
Confidence 9999999999999999998875332 25789999999999999999999888742 344432 57788
Q ss_pred HHHHHHhhccccccccchhhHHHhcc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040250 319 LIAYCASTGGSMLIIGSAAGVAFMGM-----EKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHF 379 (395)
Q Consensus 319 ~l~~~~~~gg~~tpigs~an~i~~~~-----~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~ 379 (395)
++++++|.|||.|.+|+.+|.++.+. ++++|.+|+|+|+|+++.+..++.+ ++.+.|..|
T Consensus 618 aL~~ga~~gGNgTLiGasANvv~A~iAeqHGYkltF~~fF~~GfPmml~si~i~t~-yLlvaHsvf 682 (685)
T KOG2639|consen 618 ALALGACLGGNGTLIGASANVVAAGIAEQHGYKLTFTQFFKVGFPMMLGSITIGTV-YLLVAHSVF 682 (685)
T ss_pred HHHhhhhhcCCceeechhhHHHHHHHHHHcCceEEehhHHHhcccHHHHHHHHHHH-HHHHHhhhc
Confidence 99999999999999999999998765 4699999999999999999999886 445666554
No 12
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=100.00 E-value=1.6e-38 Score=317.42 Aligned_cols=346 Identities=26% Similarity=0.344 Sum_probs=266.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 040250 11 LSRASAE-VSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRK 86 (395)
Q Consensus 11 ~~~~~~~-~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~ 86 (395)
.+|++++ .+++++++++++.++++++|+|+.||+++++. +++++++.+.+++.++++|.+.+|+++.+++.|++..
T Consensus 38 ~~~~~~~~~~~~i~~~~~~~~l~~~l~~tG~~~~la~~~~~~~~~~~~~~~~~~~~~~~~ls~~~s~~~~~~i~~pi~~~ 117 (413)
T cd01116 38 LETIVSWVDWETLALLLGMMIIVSILSETGVFEYLAIWAVKISKGRPWRLLLLLGLLTAFLSAFLDNVTTVLLMVPVTIR 117 (413)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566666 47899999999999999999999999999985 5688889999999999999999999999999998754
Q ss_pred h----CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhcccc
Q 040250 87 L----VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRK 161 (395)
Q Consensus 87 l----~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~ 161 (395)
+ +.+ +. .+++.+.+++|+|+..+|+|+++|.++.+..++++.||+.+..|+.++..+..++..++. |+++++
T Consensus 118 i~~~~g~~-~~--~~~~~~~~~a~~g~~~tp~g~~~n~~~~~~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~ 194 (413)
T cd01116 118 LCEVLGLN-PV--PVLISEVIAANIGGAATLIGDPPNIMIGSAAGLTFNDFLLHMLPSVVLALVVTFILLYFLYRNILKA 194 (413)
T ss_pred HHHHcCCC-Cc--cHHHHHHHHHHccchhhccCCchhhhhhccCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 322 22 346789999999999999999999998888899999999999998888877776666653 444332
Q ss_pred ccCC----cccccccccCCchhHHHHHHHhH-HHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHH
Q 040250 162 GQES----SNVLASEQMAPRGQLVSTVGTGA-LIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQA 236 (395)
Q Consensus 162 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 236 (395)
.++. ++.++.++.++++.......++. .+..+...+..+++....++++..++++.+. +++++|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~ 264 (413)
T cd01116 195 REEDVLALAELEPKYPIKDKVLLLKSLTILTLVIIGFVLHSPLGVSLGWIALLGALLLLLLAD----------KLDFEDV 264 (413)
T ss_pred cchhHHHhhccccccccCcHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHcC----------CCCHHHH
Confidence 2111 11112222233222233222222 2233445555567777777777766544431 2488999
Q ss_pred hcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cC
Q 040250 237 LSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVSAVIDNVPLVAATIGMYDL--TS 309 (395)
Q Consensus 237 ~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~ 309 (395)
.+++||+++++++|++.++++++++|..|++++.+.+..++.. .+.++++++|+|+||++++.++.|+... .+
T Consensus 265 ~~~i~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~s~f~sn~~~~~~~~pi~~~~~~~ 344 (413)
T cd01116 265 LSRVEWDTLLFFAGLFVLVGGLEELGIIEWIAELLVGVILGRIAVAVILILWISALLSAFIDNIPVTATMIPIVKDLASQ 344 (413)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988775432 3567899999999999999999998753 23
Q ss_pred CCCC-hhHHHHHHHHHhhccccccccchhhHHHhccc-----cccHHHHHHHHHHHHHHHHHHHHH
Q 040250 310 LPQD-SEFWQLIAYCASTGGSMLIIGSAAGVAFMGME-----KVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 310 ~~~~-~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~-----~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
.+.+ .+.+.++++++++|+++||+|+++|+++++.. +++++||+|+|.|..++...+...
T Consensus 345 ~~~~~~~~~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~~~g~~~~~~~~~~~g~~~~i~~~~~~~~ 410 (413)
T cd01116 345 LGIPLLPLWWALALGACLGGNGTLIGASANVVAAGIAEQHGYKISFWEFLKVGFPIMLVSLILATV 410 (413)
T ss_pred cCCCchHHHHHHHHHHhcccccccccchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3433 35778899999999999999999999998652 389999999999999988766655
No 13
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.3e-37 Score=313.50 Aligned_cols=353 Identities=17% Similarity=0.179 Sum_probs=271.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHH--HHHHHH
Q 040250 11 LSRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTI--VMVSLV 84 (395)
Q Consensus 11 ~~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~--i~~Pi~ 84 (395)
.++++++|. +++++++|+++++.+++|+|+.||++.++. ++|++++.+.++....+++.+.++.++.. ++.|++
T Consensus 73 ~~~~~s~f~s~~v~li~g~f~i~~al~ktgL~~Ria~~~l~~~g~~~~~l~~~~~~~~~~l~~~~ps~~a~~~~i~~pi~ 152 (471)
T PF00939_consen 73 AKEAFSGFGSPTVWLIIGGFIIGAALEKTGLDKRIALWLLKRFGGSPKGLLFAIMLAGLLLSFFIPSTTARAAPILLPIL 152 (471)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCchheehhHhhHHHHHHhccCccHHHHHHHHHHHHH
Confidence 567788886 499999999999999999999999999886 57999999999999999999997765543 455998
Q ss_pred HHh----C--CCC----hhhHHHHHHHHHHhhhccccccccccchhhhhc------cCCCChHHHHHHhHHHHHHHHHHH
Q 040250 85 RKL----V--PPS----EYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWI------HGQISTLPTMKSLFIPSAVSLAVP 148 (395)
Q Consensus 85 ~~l----~--~~~----~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~------~~~isf~~~~~~~~p~~~v~~~~~ 148 (395)
+++ + +++ +..+.+++++++++++||..++.|+++|.+..+ ..+++|.||+.+..|+.++..++.
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~~~l~l~~~~~a~~~g~~~~~g~~~n~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~ 232 (471)
T PF00939_consen 153 LSICEALGSKPSSKTPRNLGKALMLGIAFAASIGGMGTLTGSAPNLIAAGFLESATGISISFLDWFIYALPPGIIMLVLM 232 (471)
T ss_pred HhhhhcccchhhhhHHHHHHHHHHHHHhhhccccccccccCCCchHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHH
Confidence 765 1 111 134567789999999999999999999998743 246899999999999999888888
Q ss_pred HHHHHhh-hhccccccC-----CcccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhh
Q 040250 149 LALLSLT-SEVNRKGQE-----SSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIH 222 (395)
Q Consensus 149 ~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~ 222 (395)
+++.++. ||+.++.++ +++.++.+++++|+|....+.+ ..++.|+..+.+|++...++++++.++++.+
T Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~lg~~s~~Ek~~~~i~~-~~i~lw~~~~~~~i~~~~va~~~~~ll~~~~---- 307 (471)
T PF00939_consen 233 WLILYKLFKPDVKNLPDGKEFIKKELKELGPMSKKEKKVLVIFL-LTILLWITESFHGIDPAIVALLGAVLLFLPG---- 307 (471)
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHhcCCCchhHhhhhhhhh-hhhhcccCcccCCCCHHHHHHHHHHHHHHHH----
Confidence 7777554 554332211 1223445667766665543333 3334577888889999999888887775554
Q ss_pred ccchhhccCCHHHH-hcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch--h-----HHHHHHHHHHHHhcC
Q 040250 223 YGESERQKLKVPQA-LSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI--D-----LIASAIGVVSAVIDN 294 (395)
Q Consensus 223 ~~~~~~~~~~~~~~-~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~--~-----~~~~~~~~lS~~i~N 294 (395)
.+++||. .+++||+++++++|.+.++.+++++|+.+|+++.+.+..++. . .+.....+.+++++|
T Consensus 308 -------il~~~d~~~~~i~W~~l~~~~g~~~lg~~l~~sG~~~~la~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~s~ 380 (471)
T PF00939_consen 308 -------ILTWKDAAQKKIPWGTLFLFGGALSLGTALEKSGAAKWLANVLLPLLGGLSPFLVVLVILLVTVLLLTNFMSN 380 (471)
T ss_pred -------hccHHHHHhcCCCchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 3688975 579999999999999999999999999999999999987622 1 122334567899999
Q ss_pred HHHHHHHhhhhcc--cCC-CCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Q 040250 295 VPLVAATIGMYDL--TSL-PQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAA 370 (395)
Q Consensus 295 ~p~~~~~~pi~~~--~~~-~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~ 370 (395)
+++++.+.|+... .+. |.|+ ...+..+++++.++.++|+++++|.+.++.++++.+||+|+|++.+++..++.+.+
T Consensus 381 ~a~~~il~Pi~~~~a~~~~g~~p~~~~l~~~~~~~~~~~~lP~~sp~~~i~~~~g~~~~~d~~k~G~~~~ii~~iv~~~~ 460 (471)
T PF00939_consen 381 TATVAILIPIVISLAAALGGINPLALALIVAFASSFAGFLLPYSSPPNAIAYGTGYYKFKDFIKYGFPLTIIAIIVIILV 460 (471)
T ss_pred HHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHhhhccccCCcCCcceeEEEcCCCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999998753 344 4433 23344555666666899999999999999999999999999999999988776655
Q ss_pred HHHHH
Q 040250 371 YLAVN 375 (395)
Q Consensus 371 ~~~~~ 375 (395)
.+..-
T Consensus 461 ~~~~w 465 (471)
T PF00939_consen 461 AYPYW 465 (471)
T ss_pred HHHHH
Confidence 54443
No 14
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=100.00 E-value=9.2e-37 Score=293.79 Aligned_cols=351 Identities=15% Similarity=0.098 Sum_probs=244.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHH-HHHhc-CCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---
Q 040250 14 ASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVT-DNITT-RKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL--- 87 (395)
Q Consensus 14 ~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la-~~i~~-~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l--- 87 (395)
+..++ .|..++++++++++.++.++|+.++++ +.+.+ ||++++.+.+++.++++|+|+||++++++++|+...+
T Consensus 86 v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tklll~i~Sk~~L~l~f~laaafLSaFLsnttvtAvmIpVavgfy~~ 165 (515)
T TIGR00774 86 VKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLLGIRSKTLLSLAFCFAAAFLSAFLDALTVVAVVISVAVGFYGI 165 (515)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 33444 358999999999999999999999999 55543 5999999999999999999999999999999886322
Q ss_pred ---------------CCCC-----------hhhH---HHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhH
Q 040250 88 ---------------VPPS-----------EYRK---LLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLF 138 (395)
Q Consensus 88 ---------------~~~~-----------~~~~---~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~ 138 (395)
.+++ ++|+ .+++..++++|+||++||+|||||+++++..+.+|.+|+..+.
T Consensus 166 yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~g~~F~~FF~~m~ 245 (515)
T TIGR00774 166 YHKVASGNPIGDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQAGWLFGEFFLRMS 245 (515)
T ss_pred hhhhhccCchhhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHhCCCHHHHHHHHH
Confidence 1122 3333 4678999999999999999999999999888888888888887
Q ss_pred HHHHHHHHHHHHHHHhh---h------hccccccC-Cccc--ccccccCCchhHHH-HHHHhHHHHHHHhhhhcCCChHH
Q 040250 139 IPSAVSLAVPLALLSLT---S------EVNRKGQE-SSNV--LASEQMAPRGQLVS-TVGTGALIFVPVFKALTGLPPYM 205 (395)
Q Consensus 139 p~~~v~~~~~~~~~~~~---~------~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 205 (395)
|..+..++.....+.+. | +.+++.++ .++. ++++++++++|... ...+..+++. ..-.+|+. -
T Consensus 246 Pv~LP~lIilll~~~l~~~~~~~gyg~~lp~~v~~~l~~~~~~~~~~~~~~~~~~l~~q~~~~~~l~--~~la~h~a--~ 321 (515)
T TIGR00774 246 PVTLPVFICGLLTCALVEKLKVFGYGEKLPDNVRQILVDFDREERKTRTNQDKIKLWVQALIAVWLI--VALALHLA--A 321 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcccCCHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHHHHHHHH--HHHHHHHH--H
Confidence 75544333333222221 1 11111111 1111 12223333333322 1222333321 12223433 2
Q ss_pred HHHHHHHHHHHHHHhhhccchhhccCCHHHHh-cccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch--hHHH
Q 040250 206 GILLGLGVLWILTDAIHYGESERQKLKVPQAL-SRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI--DLIA 282 (395)
Q Consensus 206 ~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~-~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~--~~~~ 282 (395)
+.++|..+..+...+-...|+ .+..+++ +..|...++ .-.|.++..+.+..+.+-+.++....-++. ..+.
T Consensus 322 vg~igl~vii~~t~~~g~~~e----h~~g~af~ealpftall--~vff~~vavi~~q~lf~p~i~~vl~~~~~~q~~~il 395 (515)
T TIGR00774 322 VGLIGLSVIILATSFTGVTDE----HSIGKAFEESLPFTALL--AVFFSVVAVIIDQELFSPIIDFVLAAEEKTQLALFY 395 (515)
T ss_pred HhHHHHHHHHHHHHhcCCcch----hhhhHHHhhhccHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHcCCCccchHHHH
Confidence 456677666555432101111 1223333 357777665 345778999999999999999998765543 4788
Q ss_pred HHHHHHHHHhcCHHHHHHHhhhhccc-CCCC-----ChhHHHHHHHHHhhccccccccchhhHHHhcc-----ccccHHH
Q 040250 283 SAIGVVSAVIDNVPLVAATIGMYDLT-SLPQ-----DSEFWQLIAYCASTGGSMLIIGSAAGVAFMGM-----EKVDFFW 351 (395)
Q Consensus 283 ~~~~~lS~~i~N~p~~~~~~pi~~~~-~~~~-----~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~-----~~~~~~~ 351 (395)
+.++++|+++||+|++++|+|++... ..|. ..+.|+++++++|+|||+||+|+.+|++..+. .+++|+|
T Consensus 396 w~SgilSa~IDNVP~vatmIPvIk~l~~~G~~~~~~~~~LWWALALGA~LGGNaTpiGAsANLVv~~iA~k~G~rISF~~ 475 (515)
T TIGR00774 396 VFNGLLSSISDNVFVGTVYINEAKAALTEGLITREQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGR 475 (515)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccccccHHHHHHHHhccccccccHHHHHHHHHHHHHHHhCCCCccHHH
Confidence 99999999999999999999999642 2222 13789999999999999999999999998764 3799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040250 352 YFRKVSGFAFAGYAAGIAAYLAV 374 (395)
Q Consensus 352 ~~k~g~p~~lv~~~~~~~~~~~~ 374 (395)
|+|+|+|+++++.+++.++.+..
T Consensus 476 flK~GlP~TLvsliVs~lyl~~~ 498 (515)
T TIGR00774 476 MVYMALPYTIVLAIVGLLGIEFF 498 (515)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997655543
No 15
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=100.00 E-value=3.5e-36 Score=303.10 Aligned_cols=349 Identities=13% Similarity=0.055 Sum_probs=262.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cC-CchhHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHH
Q 040250 13 RASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TR-KPRSLLWVVGFVTFFLSSILDNLT-TTIVMVSLVRK 86 (395)
Q Consensus 13 ~~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~-~~~~l~~~~~l~~~~lS~~~~n~~-~~~i~~Pi~~~ 86 (395)
|+++++ ++++++++++++++.+++|+|+.||+++++. ++ +++..+..+++.+.+.+.+.+|++ +++++.|++.+
T Consensus 56 ~~~~~~~~~~v~l~~~~~~i~~al~~tGl~~~ia~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~sn~ar~~~i~~Pi~~~ 135 (444)
T TIGR00785 56 NALSGFADPTIWLFFGAFILATALVKTGLGKRIAYKLVGKMGGTTLGLGYFLVFLETLLAPMWPSNTARAGGILLPIIKS 135 (444)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhCchHhHhHHHHHHHHHHH
Confidence 455666 4589999999999999999999999999986 34 455555577777888888999999 88999999855
Q ss_pred h----CCC-----ChhhHHHHHHHHHHhhhccccccccccchhhhhccC------CCChHHHHHHhHHHHHHHHHHHHHH
Q 040250 87 L----VPP-----SEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG------QISTLPTMKSLFIPSAVSLAVPLAL 151 (395)
Q Consensus 87 l----~~~-----~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~------~isf~~~~~~~~p~~~v~~~~~~~~ 151 (395)
+ +.+ ++.++.++++..+++|.||..||+|+++|+++.+.. +++|.||+....|+.+++.++.+.+
T Consensus 136 i~~~~g~~~~~~~~~~~~~l~~~~~~~a~~g~~~t~~g~~~n~i~~~~~~~~~g~~i~~~~~~~~~~p~~ii~~~~~~~~ 215 (444)
T TIGR00785 136 LLPLLGSKPEKSPRKIGKYLMLGIAYSASIGSSGFLTGSAPNALAAGILSKILGIQISWGDWFLAGLPLGIILLLLVPLL 215 (444)
T ss_pred HHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCcCHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 222 233455567899999999999999999999886543 3899999999998888888777776
Q ss_pred HHhh-hhccccccCC-----cccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccc
Q 040250 152 LSLT-SEVNRKGQES-----SNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGE 225 (395)
Q Consensus 152 ~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~ 225 (395)
.+++ |++.++.++. ++.++.+++++|++... +++...++.+.....++++.+.+++.++.++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-~v~~~~i~~~~~~~~~~~~~~~~al~~~~ll~~~-------- 286 (444)
T TIGR00785 216 LYVLFPPELKLKDEVDLWAKEELEEMGPMSFREKALL-GIFLLALLLWIFGGSLGINASVVALLAVVLMLFL-------- 286 (444)
T ss_pred HHHHcCccccCCccHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHh--------
Confidence 6554 4332211110 11122334444444322 2222223345555566788887777776555443
Q ss_pred hhhccCCHHHHhcc-cCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCc-h-h-----HHHHHHHHHHHHhcCHHH
Q 040250 226 SERQKLKVPQALSR-INMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPN-I-D-----LIASAIGVVSAVIDNVPL 297 (395)
Q Consensus 226 ~~~~~~~~~~~~~~-v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~-~-~-----~~~~~~~~lS~~i~N~p~ 297 (395)
+..++||..++ +||+++++++|++.++++++++|+.+++++++.+..++ . . .+.+.+.++++++||+++
T Consensus 287 ---g~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~sG~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~ 363 (444)
T TIGR00785 287 ---GIVTWKDIQKNKVAWNTLILFGGLIGLAGGLKKSGFIKWFSEKLVGILDGLSPTIAVLVLVVLFYIILYFFASNTAH 363 (444)
T ss_pred ---CcccHHHHhhccCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 24688888886 99999999999999999999999999999999987632 2 2 245778899999999999
Q ss_pred HHHHhhhhcc--cCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 298 VAATIGMYDL--TSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLA 373 (395)
Q Consensus 298 ~~~~~pi~~~--~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~ 373 (395)
+.++.|+... .+.|.++ +.++..++++++++++||+|+++|.+.++.++++++||+|.++|..++..++...+.+.
T Consensus 364 ~~i~~Pi~~~ia~~~G~~p~~~~~~~~~~~~~~~~~tP~~s~~n~i~~~~g~~~~~~~~k~~~p~~l~~~~~~~~~~~~ 442 (444)
T TIGR00785 364 TAALVPIFFSVASAQGIPLELLALALALSASLMGFLTPYATPPNAIAYGSGYVKIKDMWRVGAIIGIVGLIVLLLVGTL 442 (444)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCccceeecCCCccHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999998753 3445543 45677788889988999999999999988888999999999999999988877765554
No 16
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-35 Score=292.85 Aligned_cols=356 Identities=16% Similarity=0.159 Sum_probs=273.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHH-HhhhhHHHHHHHHHHH
Q 040250 10 ELSRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLS-SILDNLTTTIVMVSLV 84 (395)
Q Consensus 10 ~~~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS-~~~~n~~~~~i~~Pi~ 84 (395)
..++.+..++ ++++++++++..+..++++|+.+|++.+.. +++|+++.+.++++++++| .+.+|+++..++.|++
T Consensus 73 ~~~~~l~~~~~~~I~l~~~~f~~s~~~~~~gl~~~la~~~l~~~~~~p~~l~~~l~~~~~~ls~~~~sntat~~i~~piv 152 (461)
T COG0471 73 ASKLALSGFANSTIWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTPRGLALGLVLLTLFLSPAFPSNTATGGIMLPLI 152 (461)
T ss_pred cHHHHHHHhhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCceecccchhHhhHHhh
Confidence 4456666665 499999999999999999999999998875 6799999999999999999 9999999999999998
Q ss_pred HHh----CCCCh--hhHHHHHHHHHHhhhccccccccccchhhhhccCC---CChHHHHHHhHHHHHHHHHHHHHHHHhh
Q 040250 85 RKL----VPPSE--YRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQ---ISTLPTMKSLFIPSAVSLAVPLALLSLT 155 (395)
Q Consensus 85 ~~l----~~~~~--~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~---isf~~~~~~~~p~~~v~~~~~~~~~~~~ 155 (395)
+.+ +++.+ ..+.+.+.+..++|+|+.++|+|+|+|.+..++.+ ++|.+|+....|+.++.....+++.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~~~~~~~~~w~~~~~p~~iv~l~~~~li~~~~ 232 (461)
T COG0471 153 LSLSPLLGSPPRDKIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLNPISLSWGEWFLAMLPLGILLLLLLLLLLYKL 232 (461)
T ss_pred hcchhhcCCChHHHHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhcccCCCHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 654 33322 23456789999999999999999999999988777 9999999999999999988888888765
Q ss_pred hhc-cc-cccC-C----cccccccccCCchhHHHHHHHhHHHHHHHhhhhcCC-ChHHHHHHHHHHHHHHHHhhhccchh
Q 040250 156 SEV-NR-KGQE-S----SNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGL-PPYMGILLGLGVLWILTDAIHYGESE 227 (395)
Q Consensus 156 ~~~-~~-~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~a~~~~~~l~l~~~~~~~~~~~ 227 (395)
+|. +. +.+. . ++.++.++.+++++.....+..+ ...|...+..+. +....++++..++++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~-~~~w~~~~~~~~~~~~~~ali~~~~~~~~~v-------- 303 (461)
T COG0471 233 FPPREIKETPNNPVAAKRELKELGPLLRDEKLLLGIFLLL-LLLWIFGKLLGKIDATLIALIPVALLLLAGV-------- 303 (461)
T ss_pred cChHhhccCcchHHHHHHHHHHhcCcchhhHHHHHHHHHH-HHHHHhccccchhHHHHHHHHHHHHHHHHHH--------
Confidence 332 21 1111 0 11112233333333333333222 233544444442 444556666666555542
Q ss_pred hccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh------HHHHHHHHHHHHhcCHHHHHHH
Q 040250 228 RQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID------LIASAIGVVSAVIDNVPLVAAT 301 (395)
Q Consensus 228 ~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~------~~~~~~~~lS~~i~N~p~~~~~ 301 (395)
.+++|..+++||+++++++|++.++++++++|..+|+++.+.+..++.. .+.+.+.+++.|+||++.++.+
T Consensus 304 ---l~~~~~~~~i~W~~lilf~g~i~l~~~l~~tG~~~~i~~~l~~~~~~~~~~~il~~~~~~~~~~~~f~SntA~~~~m 380 (461)
T COG0471 304 ---LTWKEVYKKIDWGTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGGLGPFAILLLLLLLTLVLTLFASNTATAIAM 380 (461)
T ss_pred ---HhHHHHHHhCCchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4667999999999999999999999999999999999999999876531 3567788999999999999999
Q ss_pred hhhhcc--cCCCCChhHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 302 IGMYDL--TSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 302 ~pi~~~--~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
.|+... .+.+.++......+..++.++++||+|+++|.++++.++++++||.|.|.|.+++..++.+.+.+.+...
T Consensus 381 ~Pi~~~ia~~l~~~p~~~~~~v~~~as~~~~tpv~~~~n~iv~g~G~~k~~d~~~~G~~l~~v~~iv~i~~~~~~~~~ 458 (461)
T COG0471 381 VPIAIALASALGGAPLLLLMLVAVSASGGFLTPVGSPPNPIALGSGYVKFKDWWKVGFILSIVLIIVLLVIGLLWWPV 458 (461)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcCCCCCCCceEECCCCccHHHHHHhccHHHHHHHHHHHHHHHHHHhh
Confidence 999864 4454433233333444456779999999999999999999999999999999999999888777766543
No 17
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=100.00 E-value=1.1e-33 Score=280.97 Aligned_cols=341 Identities=22% Similarity=0.264 Sum_probs=250.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 040250 12 SRASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL 87 (395)
Q Consensus 12 ~~~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l 87 (395)
+|+.+++ +|++++++|++.++++++|+|+.||+++++. +++++. .+.++..++++|.+.+|+++..++.|+..++
T Consensus 31 ~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~~~-~~~~~~~~~~ls~~~s~~~~~~il~Pi~~~~ 109 (396)
T cd00625 31 KEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSRRL-LLLLMLLTAALSAFFSNDATAVLLTPIVLAL 109 (396)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHHhchhhhhhhHHHHHHH
Confidence 4555555 7899999999999999999999999999985 456666 6777888899999999999999999988654
Q ss_pred ----CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccc
Q 040250 88 ----VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKG 162 (395)
Q Consensus 88 ----~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~ 162 (395)
+.+ + ++.+.+++.++++.||..||+|+++|.++.+..++++.||+.+..|+.++..++.+.+.+++ |+++.+.
T Consensus 110 ~~~~g~~-~-~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T cd00625 110 LRKLGLS-P-PVPLLLALAFAANIGGAATPIGNPPNLIIASLSGLGFLDFLAFMAPPALGLLLLLLGLLYLLFRKKLLLP 187 (396)
T ss_pred HHHhCCC-C-CccHHHHHHHHHhccccccccCCCCceEEEeCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 322 2 12356789999999999999999999998877789999999999999988777766666543 4332221
Q ss_pred cCCcc---ccccccc-CCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc
Q 040250 163 QESSN---VLASEQM-APRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS 238 (395)
Q Consensus 163 ~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 238 (395)
++.++ .++.++. +++++....+.++.+.+ +..... +++...+..+...+++... ..+++||+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~ 255 (396)
T cd00625 188 DEDKLTVLAEPLPARPLLKKFLLLALLLLLLFV-LLFFFL--IPLGLIALLGALLLLLLLV---------RGLDPEEVLK 255 (396)
T ss_pred hhhhhhhhhccChhcccccHHHHHHHHHHHHHH-HHHHHH--HhHHHHHHHHHHHHHHHhc---------CCCCHHHHHH
Confidence 11110 0111111 12333333222222211 111111 3444444444443333321 1268999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCc-hh----HHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCCC
Q 040250 239 RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPN-ID----LIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQD 313 (395)
Q Consensus 239 ~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~-~~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~~ 313 (395)
++||+++++++|.++++.+++++|..+|+++.+.+..+. .. .+.+++.++|+|+||++.+.++.|+..... ..
T Consensus 256 ~i~w~~~~~~~~~~~l~~~l~~~G~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~n~~~~~~~~Pi~~~~~--~~ 333 (396)
T cd00625 256 SVDWGTLLFFAGLFVLVGALESTGLLEWLAELLVALVGLPPLAALLLIGLLSALLSNFISNVPTVALLLPIAASLA--PP 333 (396)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--Cc
Confidence 999999999999999999999999999999999987632 21 466788999999999999999999975322 12
Q ss_pred hhHHHHHHHHHhhccccccccchhhHHHhccc-----cccHHHHHHHHHHHHHHHHHHHHH
Q 040250 314 SEFWQLIAYCASTGGSMLIIGSAAGVAFMGME-----KVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 314 ~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~-----~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
...+.....+.+++++.|++||.+|++.++.. +++++||+|+|+|.+++..++.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~s~a~~l~~~~~~~~~~~~~~~~~~k~g~~~~~~~~~~~~~ 394 (396)
T cd00625 334 EPAWLALALGSTLGGNLTLIGSLANLIPLGAAENAGVGISFGEFLKVGLPLTLLSLVVSLL 394 (396)
T ss_pred hHHHHHHHHHhcccccccccccHHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888999999999999999998762 489999999999999998877765
No 18
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=100.00 E-value=6.6e-33 Score=274.08 Aligned_cols=318 Identities=18% Similarity=0.131 Sum_probs=244.1
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-
Q 040250 13 RASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL- 87 (395)
Q Consensus 13 ~~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l- 87 (395)
|..+++ +|++++++|++.++++++|+|+.||+++++. +++++++...+++.+.++|.+.+|+++..++.|+..++
T Consensus 39 ~~~~~~~~~~i~li~g~~~l~~~~~~tG~~~~la~~i~~~~~~~~~~~~~~~~~~~~~ls~~~s~~~~~~i~~Pi~~~~~ 118 (382)
T cd01115 39 EAFSGFSDPAVILFLAGFILGAALTRTGLAKRIATKLLKRAGKGERRLLLLLMLVTAFLSAFMSNTATVAIMLPVALGLA 118 (382)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444445 5799999999999999999999999999986 56888999999999999999999999999999998665
Q ss_pred ---CCCChhhHHHHHHHHHHhhhccccccccccchhhhhcc------CCCChHHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q 040250 88 ---VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIH------GQISTLPTMKSLFIPSAVSLAVPLALLSLTSEV 158 (395)
Q Consensus 88 ---~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~------~~isf~~~~~~~~p~~~v~~~~~~~~~~~~~~~ 158 (395)
+.+ | +.+.+.+.+++|.|++.+|+|+++|.++.+. .+.++.||+....|+.++..+ +.+++
T Consensus 119 ~~~g~~-~--~~~~l~~~~~~~~g~~~~p~g~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~--- 188 (382)
T cd01115 119 AKLDIS-P--SRLLMPLAFAASIGGMLTLIGTPPNLVASGYLESLGGQGFSFFEFTPIGLPLLIIGLL----YLWFI--- 188 (382)
T ss_pred HHcCCC-h--hHHHHHHHHHHHhcccceecCCchHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHHH----HHHHH---
Confidence 222 2 2356789999999999999999999988652 356888998777766554332 22221
Q ss_pred cccccCCcccccccccCCchhHHHHHHHhHHHHHHHhhhh--cCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHH
Q 040250 159 NRKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKAL--TGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQA 236 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~ 236 (395)
++... .+..+ +.+...+. .+.|.+..+..+..++.+.+ ..++||.
T Consensus 189 ------------------~~~~~---~~~~i-~l~~~~~~~~~~~~~~~~a~~~~~~l~~~~-----------~~~~~~~ 235 (382)
T cd01115 189 ------------------FRLAV---LIITI-VLLAALAAITGLLPVSVAIAIGAIVLVFGG-----------VLLTKED 235 (382)
T ss_pred ------------------HHHHH---HHHHH-HHHHHHHHHcCcccHHHHHHHHHHHHHHHc-----------cCCHHHH
Confidence 11111 11111 11222222 34677766665554443332 3688999
Q ss_pred hcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCc-hh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--c
Q 040250 237 LSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPN-ID-----LIASAIGVVSAVIDNVPLVAATIGMYDL--T 308 (395)
Q Consensus 237 ~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~-~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~ 308 (395)
.+++||+++++++|++.++++++++|+.|++++.+.+..++ .. .+.+.+.++|+++||++.+.++.|+... .
T Consensus 236 ~~~~~w~~l~~~~~~~~l~~~l~~~Gl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~~~~ 315 (382)
T cd01115 236 YKSIDWGIIFLFAGGIPLGKALESSGAAALIAEALISLLGGLPPFAILLLLCLLTLVLTNFISNTATAVLLAPIALSIAL 315 (382)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875433 21 4567889999999999999999998753 3
Q ss_pred CCCCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 309 SLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAV 374 (395)
Q Consensus 309 ~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~ 374 (395)
+.|.++ +..+..+++++. +++||+|+++|.+..+.++++++||+|+++|..+++.++...+.+.+
T Consensus 316 ~~g~~p~~~~~~~~~~~~~-~~~tp~~~~~n~i~~~~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~ 381 (382)
T cd01115 316 SLGLPPEALLLAVAIGASC-AFMLPVGTPPNAIVLGPGGYKFSDFAKVGLPLSILSLVVSVTMIPLI 381 (382)
T ss_pred HcCCChHHHHHHHHHHHHH-HHcCccCCCCCeeeeCCCCccHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 344443 456777888876 58999999999999998899999999999999999999888776654
No 19
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.97 E-value=2.8e-29 Score=245.50 Aligned_cols=287 Identities=21% Similarity=0.259 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 040250 7 AVSELSRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVS 82 (395)
Q Consensus 7 ~~~~~~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~P 82 (395)
..+..+|+.+.+. +++.+++|+++ ++.++|+|++|++++++. |++++++.+.+++.++++|++++|+++++++.|
T Consensus 40 ~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~~~l~~~~~~~~~~lS~~~~N~~~v~~~~P 118 (351)
T PF03600_consen 40 GVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKPWRLLLLLMLVTALLSAFLDNTTVVLIMIP 118 (351)
T ss_pred cccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhcchHHHhhHH
Confidence 3456777777774 58888888888 999999999999999996 456678999999999999999999999999999
Q ss_pred HHHHhC-C-CChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCCh--HHHHHHhHHHHHHHHHHHHHHHHhhhhc
Q 040250 83 LVRKLV-P-PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQIST--LPTMKSLFIPSAVSLAVPLALLSLTSEV 158 (395)
Q Consensus 83 i~~~l~-~-~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf--~~~~~~~~p~~~v~~~~~~~~~~~~~~~ 158 (395)
++.++. + +.+. +.+.+++++++|+||+.||+|||+|+++.+..++++ .|++....|..+++.+..+...++++++
T Consensus 119 i~~~~~~~~~i~~-~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~ 197 (351)
T PF03600_consen 119 IVLSLARKLGIPP-SPLLMPLAFAANIGGMLTPIGNPTNLIIANASGLPFFGFDFFALGLPAVIVGLLVLIFILYFLFRK 197 (351)
T ss_pred HHHHHHHHcCCCh-HHHHHHHHHHhccccccCcCCCcchhhhhhhcccccchhhhHhhhHHHHHHHHHHHHHHHHHHccc
Confidence 987652 1 1122 235689999999999999999999999988888888 8999888887777666555444443221
Q ss_pred cccccCCcccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHH-HHHHHHHHHHHhhhccchhhccCCHHHHh
Q 040250 159 NRKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGIL-LGLGVLWILTDAIHYGESERQKLKVPQAL 237 (395)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~-~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 237 (395)
++++.......+....+... ...+..+...+. .+..++.+.+. .+.+|..
T Consensus 198 ----------------~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~ 248 (351)
T PF03600_consen 198 ----------------RKPKLFASPFILVLVVILVL--LVSGLVPIWIALLIGALLALLTNC-----------KDLKEAY 248 (351)
T ss_pred ----------------cCcchhHHHHHHHHHHHHHH--HHhccCcHHHHHHHHHHHHHHHhc-----------ccchhhh
Confidence 11112222122211111111 134554444444 34444333321 1334444
Q ss_pred c------ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCc--hhHHHHHHHHHHHHhcCHHHHHHH-----hhh
Q 040250 238 S------RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPN--IDLIASAIGVVSAVIDNVPLVAAT-----IGM 304 (395)
Q Consensus 238 ~------~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~--~~~~~~~~~~lS~~i~N~p~~~~~-----~pi 304 (395)
+ ++||+++++++|++.+++++++||..|.+++++.+..+. +..+.+.+.++|+++||+|.+..+ .|+
T Consensus 249 ~~~~~~~~~~~~~ll~~~~~~~~~~~l~~tG~~~~la~~l~~~~~~~~~~~i~~~~~~ls~~~~n~p~~~~~~~~~~~pi 328 (351)
T PF03600_consen 249 RVLNSGASIDWNTLLFFAGLFIFVGALSNTGAFEALADWLLSISGPLGPLAILWVSALLSAVISNVPATLLMSNDAMLPI 328 (351)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHH
Confidence 4 899999999999999999999999999999999997552 235667799999999999999888 677
Q ss_pred hcc--cCCCCChhHHHHHHHHHhhc
Q 040250 305 YDL--TSLPQDSEFWQLIAYCASTG 327 (395)
Q Consensus 305 ~~~--~~~~~~~~~~~~l~~~~~~g 327 (395)
... .+.|.++ ..+..+.++|
T Consensus 329 ~~~~~~~~Gv~~---~~l~~~~~ia 350 (351)
T PF03600_consen 329 AISMAQQFGVSP---LPLAWALAIA 350 (351)
T ss_pred HHHHHHHCCCCH---HHHHHHHHhc
Confidence 653 3455432 3444555544
No 20
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=99.97 E-value=1.9e-28 Score=244.78 Aligned_cols=347 Identities=12% Similarity=0.080 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 5 EIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
+|..+.+.+++....++..+++....+++.++++|.+|++++++. |+|++++.+.+...+..++.+.+|+++.+++.
T Consensus 43 ~~~~~~i~~G~~~~~~~~~~i~~~~~l~~il~~sG~~~~i~~~iv~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~li~~ 122 (431)
T TIGR00784 43 KGIGDMMIEGIQTVAPTAAMLLFAILYFGIMIDAGLFDPLIEKILSIVKGDPLKIAVGTAVLTMLIALDGDGTTTYMITV 122 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCceeHHHHHHHHHHHHHHhccchhhhhHH
Confidence 788999999999999999999999999999999999999999886 56778899999999999999999998888877
Q ss_pred HHHH----HhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-h
Q 040250 82 SLVR----KLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-S 156 (395)
Q Consensus 82 Pi~~----~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~ 156 (395)
|+.. +++.+ |. .+...+..++|.++ .+|+|+|+|..+.. .|.++.||+.+..|+.+..+++...+.++. |
T Consensus 123 p~~~~l~~~lgi~-~~--~l~~~i~~~~~~~~-~~P~g~p~~~~a~~-lg~~~~~~~~~~~p~~i~~li~~~~~~~~~~r 197 (431)
T TIGR00784 123 SAMLPLYKRLGMN-PM--VLAGIAMLGLGIMN-MIPWGGPTTRAISV-LGLDPSEFFVPLIPTMLGGILCVIAVAYLLGK 197 (431)
T ss_pred HHHHHHHHHcCCC-HH--HHHHHHHHHhhhhc-ceeCCchHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Confidence 7664 44433 22 34567888889999 99999999966654 689999999999999888776666555443 3
Q ss_pred hccccc-----cC-C-cc--c-ccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccch
Q 040250 157 EVNRKG-----QE-S-SN--V-LASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGES 226 (395)
Q Consensus 157 ~~~~~~-----~~-~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~ 226 (395)
++++|. ++ . ++ . +++++.+++++.+..+.....++.....+ .++++.+++++..+.+++.+. ..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~l~viv~~~~~--~~~~~~~~li~~~iall~~~~--~~~- 272 (431)
T TIGR00784 198 KERKRLGVIQLEPRASQSYPAAALESELKRPRLIWFNLLLTISLMVFLVLG--TKHLSVLFLIAFVLALTVNYP--NVK- 272 (431)
T ss_pred HHHHHhcccccchhhhhhhhccchhhhhcCchHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCC--CHH-
Confidence 322211 00 0 00 0 11112233444444444333222222222 245666667777666555421 001
Q ss_pred hhccCCHHHHh----cccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch------hHHHHHHHHHHHHhcCHH
Q 040250 227 ERQKLKVPQAL----SRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI------DLIASAIGVVSAVIDNVP 296 (395)
Q Consensus 227 ~~~~~~~~~~~----~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~------~~~~~~~~~lS~~i~N~p 296 (395)
.+.++.. +.+||.++++.+|.| +++++++|..|++++.+.+..++. ..+.++++++|+++||+|
T Consensus 273 ----~~~~~i~~~~~~~v~~~~Li~~aglf--~~~l~~~G~i~~la~~l~~~~~~~~~~~~~~i~~~~s~~~s~~~sn~a 346 (431)
T TIGR00784 273 ----MQKERIAAHSGNALTVVSMVFAAGVF--TGILSGTKMVDAMAGSLVSIIPSSMGGFFPVIVALTSIPFTFVMSNDA 346 (431)
T ss_pred ----HHHHHHHhccccHhHHHHHHHHHHHH--HHHHhhcCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHcCCHH
Confidence 1223344 678999999999999 999999999999999999976432 146788999999999999
Q ss_pred HHHHHhhhhcc--cCCCCChhHHHHHHHHHhhccc---cccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 297 LVAATIGMYDL--TSLPQDSEFWQLIAYCASTGGS---MLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAY 371 (395)
Q Consensus 297 ~~~~~~pi~~~--~~~~~~~~~~~~l~~~~~~gg~---~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~ 371 (395)
++..++|++.. .+.|.++ ..++.+..+|.+ .+|+ +++|.+.++..+++.+|+.|++++......++....-
T Consensus 347 ~~~~l~Piv~~ia~~~G~~~---~~l~~a~~i~~~~~~~SPv-s~~~~l~~~~~~~~~~d~~k~~~~~~~~~~~v~~~~~ 422 (431)
T TIGR00784 347 YYFGVLPIFAEAASAYGIDP---VEIARASIMGQPVHLLSPL-VPSTVLLVGMLGVSLGDHQKFAVKWAVITSIVMTLLA 422 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCH---HHHHHHHHhcccchhcCCc-hHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999864 3445433 233445555554 8999 8999999999999999999999999888777665433
No 21
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.9e-27 Score=230.78 Aligned_cols=365 Identities=15% Similarity=0.067 Sum_probs=252.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----C
Q 040250 16 AEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL----V 88 (395)
Q Consensus 16 ~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l----~ 88 (395)
+++.|+..+..|..+++.+.|+.++.+|+|.+.. +.+|.++.+.++..++++|+|++|++++++|+|++..+ .
T Consensus 87 ~yf~d~~~l~~~~l~~A~AvE~~~Lh~riaL~~~~~vg~~P~~l~lg~m~~taflsmwisntA~tamm~pi~~avL~~l~ 166 (586)
T KOG1281|consen 87 EYFKDTNLLFLGGLIMALAVEKCNLHKRIALKVLRKVGVEPARLMLGFMGVTAFLSMWISNTATTAMMIPIATAVLQELP 166 (586)
T ss_pred HHHhhhhHHHhhhHHHHHHHHHhhhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4667899999999999999999999999998875 67999999999999999999999999999999997321 0
Q ss_pred C-------------------CC-------h-----------------------------------hhHHHHHHHHHHhhh
Q 040250 89 P-------------------PS-------E-----------------------------------YRKLLGAVVVIAANA 107 (395)
Q Consensus 89 ~-------------------~~-------~-----------------------------------~~~~l~~~i~~~an~ 107 (395)
. ++ | ..+.+.+++++++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~vp~~~v~~~~~~~~~g~~~~~~~~~i~~~~~s~~~~~~~~g~~L~ia~Sa~i 246 (586)
T KOG1281|consen 167 SFNDEEQHRMLESVSHLWAVEAIPTSFLVPLLTVFFPILKDETGKPMSPTSSSILSTMWSSTIMLLLKGFTLGIAYSAYI 246 (586)
T ss_pred ccchhhhhhhHHHhhcchhhhcCCcccCCcchhhcccccCCccCCCCCcchhhhhhhccchHHHHHHHHHHHHHHHHHhh
Confidence 0 00 0 124556899999999
Q ss_pred ccccccccccchhhhhcc---------CCCChHHHHHHhHHHHHHHHHHHHHHHHhh---h---hccccc----cCCc--
Q 040250 108 GGVWSPIGDVTTTMLWIH---------GQISTLPTMKSLFIPSAVSLAVPLALLSLT---S---EVNRKG----QESS-- 166 (395)
Q Consensus 108 gg~~tpiG~~~n~i~~~~---------~~isf~~~~~~~~p~~~v~~~~~~~~~~~~---~---~~~~~~----~~~~-- 166 (395)
||..|..|+.+|++.-.+ ...+|..|+.+.+||.+..+...|...+.. . ++.++. +.++
T Consensus 247 gg~~titGT~pnlVll~~~~~~fp~s~~~~Nf~swl~Fs~ppmL~~L~~~w~~l~~lflG~~~~~~~~~~~s~~~s~q~~ 326 (586)
T KOG1281|consen 247 GGTLTITGTAPNLVLLGNMNVRFPLSMWVSNFASWLFFSFPPMLRYLLASWPFLQALFLGIALAANIGGMSSPISSPQNI 326 (586)
T ss_pred cchhhhcCCCccHHHHHHHHHhccccccccchHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhhhhhcCCCCCcCChHHH
Confidence 999999999999887432 246788999999999999888887666432 1 111111 1000
Q ss_pred --------ccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChH--------------HHHHHHHHHHHHHHHhhhcc
Q 040250 167 --------NVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPY--------------MGILLGLGVLWILTDAIHYG 224 (395)
Q Consensus 167 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------~~a~~~~~~l~l~~~~~~~~ 224 (395)
++++-+++.-.++....++++.++ .|+..+ .|+-+. ...++...+++.+.. +.
T Consensus 327 ~a~~~i~~~y~~lG~~~~~e~~v~ilfil~v~-lw~tr~-p~~~pgw~~~f~~~~~~~d~t~~~~i~ilLf~lps---~~ 401 (586)
T KOG1281|consen 327 VAKKVIKPEYDGLGPMFFAEKPVFILFILLVW-LWFTRD-PGFVPGWGDLFKPGFFQSDSTSVVIITILLFCLPS---QI 401 (586)
T ss_pred HHHHHhhHhhcccccchHHHHHHHHHHHHHHH-HHHhcC-CCCccchHhhcCCccceehhhHHHHHHHHhheecc---cC
Confidence 011222332222222222222222 233332 221111 111222222222110 11
Q ss_pred c--------------hhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh------HHHHH
Q 040250 225 E--------------SERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID------LIASA 284 (395)
Q Consensus 225 ~--------------~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~------~~~~~ 284 (395)
+ ...+..+|++..++++|+.+++.+|+|+++.+.++||+.+++++.+.+ +.+.+ .+.++
T Consensus 402 ~~f~~~~~~~~~p~~~~~~l~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L~~-l~~~p~~~i~li~~ll 480 (586)
T KOG1281|consen 402 PGFGKSGFIAIIPIVVFFGLGLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNALKP-LESLPVFAILLIFSLL 480 (586)
T ss_pred ccccccCcccccccccccCccchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhhhh-cccCChHHHHHHHHHH
Confidence 1 012347899988899999999999999999999999999999999999 44322 35677
Q ss_pred HHHHHHHhcCHHHHHHHhhhhcc--cCCCCChh-HHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHH
Q 040250 285 IGVVSAVIDNVPLVAATIGMYDL--TSLPQDSE-FWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAF 361 (395)
Q Consensus 285 ~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~~-~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~l 361 (395)
..++++|.||++++.+++|+..+ .+++.++. +.+.-+++++++ ++.|+|+|+|.+++++++.+-+||+|.|..+.+
T Consensus 481 ~~v~TeF~Sntata~IfiPIl~ela~~l~~hplyl~lp~tl~~SfA-f~LPvstpPNaivfs~~~~k~~dm~~~G~~l~i 559 (586)
T KOG1281|consen 481 ILVVTEFVSNTATASIFIPILAELAEALGIHPLYLMLPTTLACSFA-FMLPVSTPPNAIVFSMGDIKGKDMLKVGLFLNI 559 (586)
T ss_pred HHHHHHHhcchhheeehHHhHHHHHHhcCCCCceeehhHHHHHHHH-HhcCCCCCCCeEEEeecccchhhHhhhccchhH
Confidence 88999999999999999999874 45554332 334455555553 789999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccc
Q 040250 362 AGYAAGIAAYLAVNSLHFSLRATLAQAPIQ 391 (395)
Q Consensus 362 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (395)
.+.+......-.+.-..|. +...|+|
T Consensus 560 ~~~a~l~~~m~tw~~~~f~----l~~~p~w 585 (586)
T KOG1281|consen 560 GGPAILLLFMNTWTLGYFI----LGTFPFW 585 (586)
T ss_pred HHHHHHHHHHHHHHHHhch----hccCCCC
Confidence 7665554433344433333 5566666
No 22
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=99.88 E-value=4.1e-21 Score=179.48 Aligned_cols=343 Identities=14% Similarity=0.116 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHH---
Q 040250 5 EIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTI--- 78 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~--- 78 (395)
.+.++...|+.+...++..++++..++++.|.++|+||.+.+++. |++|.++.....++++..|-..+..++.+
T Consensus 44 ~~lg~m~~~Gi~~va~t~imlmFAILfFgIM~DsGLFdPli~~il~~~kgdp~kV~igTavla~~v~LDGdGatTflIti 123 (433)
T COG2851 44 TGLGEMMLDGIKSVAPTAIMLMFAILFFGIMIDSGLFDPLIRKILSIVKGDPVKVVIGTAVLAAVVSLDGDGATTFLITI 123 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCceeeeHHHHHHHHHhhccCCCceEEEeeH
Confidence 467889999999999999999999999999999999999999885 79999999999999999998888776554
Q ss_pred -HHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-h
Q 040250 79 -VMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-S 156 (395)
Q Consensus 79 -i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~ 156 (395)
-+.|+++|++-+ |+ .+......++.+ -.++|+|+|+. -+++.-|.+-.|.+.++.|..+++++....+.++. +
T Consensus 124 ~A~LPlYkrLgmn-~~--~l~~l~~ls~gv-mN~~PWGGPt~-Raas~Lg~d~~el~~pliP~~i~Gl~~vl~lA~~lG~ 198 (433)
T COG2851 124 PALLPLYKRLGMN-PY--LLALLATLSAGV-MNMLPWGGPTA-RAASVLGVDPAELFVPLIPIQIIGLVLVLALAWLLGK 198 (433)
T ss_pred HhHhHHHHHcCCc-HH--HHHHHHHHhhhh-eecCCCCCcHH-HHHHHhCCCHHHHHhhhhHHHHHHHHHHHHHHHHhhH
Confidence 567999998644 33 222233334444 35899999987 44456677878988888888777776665555544 4
Q ss_pred hccccccC---------Cccc--ccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccc
Q 040250 157 EVNRKGQE---------SSNV--LASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGE 225 (395)
Q Consensus 157 ~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~ 225 (395)
++++|..+ ..+. +++++.+|+|.++....+...+..+...+ -+|+....++|.++.+..++.. .|
T Consensus 199 kErkRlg~~~~~~~~~~~~~~~~~~~~~~~rpkl~W~N~lLtl~lm~~Lv~g--i~p~~~lFmig~~iAL~vNYP~--vk 274 (433)
T COG2851 199 KERKRLGVIDLSEELEQLVELSEEDQEELKRPKLFWFNLLLTLALMGLLVSG--IFPPGVLFMIGFAIALPVNYPN--VK 274 (433)
T ss_pred HHHHHhhhccCchhhhhccccCCchhhhhhccHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHhCCCC--HH
Confidence 44333211 0011 12233556666666655444333333333 3578888889988887777531 23
Q ss_pred hhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh--HH----HHHHHHHHHHhcCHHHHH
Q 040250 226 SERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID--LI----ASAIGVVSAVIDNVPLVA 299 (395)
Q Consensus 226 ~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~--~~----~~~~~~lS~~i~N~p~~~ 299 (395)
+++++++ +++-+.+..-.+.+-+|.| .+.+++||+.|.+++.+.+.++... .+ .+.+.-++-|+||.++..
T Consensus 275 ~Q~~ri~-aha~nal~vvs~i~AAGif--~Gil~gtgMvdama~si~~vIP~~lgpyl~~ivgl~svP~tf~~snDAyYf 351 (433)
T COG2851 275 EQMERIG-AHAGNALMVVSLIFAAGIF--LGILSGTGMVDAMAKSIVSVIPDALGPYLPLIVGLLSVPFTFFMSNDAYYF 351 (433)
T ss_pred HHHHHHH-HhCcchhHHHHHHHHHHHH--hhhhCCCchHHHHHHHHHHhCcHhhcchHHHHHHHHcCCeEEEecCcchhh
Confidence 3333322 2333456566677777777 8999999999999999999887542 23 344444455899999999
Q ss_pred HHhhhhcc--cCCCCChhHHHHHHHHHhhcccc---ccccchhhHHHhccccccHHHHHHHHHHHHHHH
Q 040250 300 ATIGMYDL--TSLPQDSEFWQLIAYCASTGGSM---LIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAG 363 (395)
Q Consensus 300 ~~~pi~~~--~~~~~~~~~~~~l~~~~~~gg~~---tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~ 363 (395)
-.+|++.+ .++|.++ ...+.++-+|... +|. .|+..+..+..+.+++||.|+.+-.....
T Consensus 352 GvlPIv~e~as~yGv~p---v~~A~AsiiGq~vh~lSPl-vPat~LlvgLa~v~~gdh~k~a~~wa~~~ 416 (433)
T COG2851 352 GVLPIVAEAASAYGVEP---VEIARASIIGQPVHFLSPL-VPATYLLVGLAKVDMGDHQKFALKWAWGI 416 (433)
T ss_pred hhHHHHHHHHHHcCCCH---HHHHHHHHhCCcceeeccc-hHHHHHHHHhhcCChhHHHHHHHHHHHHH
Confidence 99999864 5666643 3455666666554 555 58888889999999999999776655433
No 23
>PLN00136 silicon transporter; Provisional
Probab=99.86 E-value=1.9e-20 Score=188.75 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=145.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch
Q 040250 199 TGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI 278 (395)
Q Consensus 199 ~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~ 278 (395)
.+++....+++++.++++.+ ..+.+|+.+.+||+++++++|+|++++++++||+.+++++.+.+..++.
T Consensus 31 l~i~~~~~Allga~llll~g-----------~~~~~~a~~~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~~~~ 99 (482)
T PLN00136 31 LPIGRTAGALLSAVLMIVFH-----------VISPDDAYASIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQGG 99 (482)
T ss_pred CCccHHHHHHHHHHHHHHhC-----------CCCHHHHHHhCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCh
Confidence 34566666777776654543 3688999999999999999999999999999999999999999865443
Q ss_pred h----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCC-hhHHHHHHHHHhhccccccccchhhHHHhccccccHHH
Q 040250 279 D----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQD-SEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFW 351 (395)
Q Consensus 279 ~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~-~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~ 351 (395)
. .+.++++++|+|++|++++.++.|++.. .+.+.+ .++++++++++|+||+.||+|+++|++..+..+++|.|
T Consensus 100 ~~ll~~l~~~ta~lSafl~N~~t~llm~Piv~~la~~~~~~p~~~ll~la~aAn~Gg~~TpiG~p~Nlii~~~~~i~F~d 179 (482)
T PLN00136 100 RDLLCRVCVVTALASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAFNSKITFPK 179 (482)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccccchheeeCCCCCCHHH
Confidence 2 4678899999999999999999999853 233333 46788999999999999999999999999878999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040250 352 YFRKVSGFAFAGYAAGIAAYLAVNSLHFSL 381 (395)
Q Consensus 352 ~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~ 381 (395)
|++++.|.++++++++++++++++|...+.
T Consensus 180 F~~~~~P~~li~l~v~~~~l~~~~r~~l~~ 209 (482)
T PLN00136 180 FLLGILPAMLAGMAVNMVMLLCMYWKDLDG 209 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999998887743
No 24
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=99.78 E-value=1.4e-15 Score=151.67 Aligned_cols=320 Identities=11% Similarity=0.081 Sum_probs=192.0
Q ss_pred HHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhh-hhHHHHHHHH----HHHHHhCCCChhhHHHHHHH
Q 040250 30 TIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSIL-DNLTTTIVMV----SLVRKLVPPSEYRKLLGAVV 101 (395)
Q Consensus 30 ~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i~~----Pi~~~l~~~~~~~~~l~~~i 101 (395)
.+.+.++|+|..|++.+... |+++........+.+++++++. ++.+.++++. |..++.+-++.. ..
T Consensus 48 ~~g~~l~~~G~~~~l~~~~~~~~g~~~~~~~~~~~~~~~l~g~l~Gs~~ataa~~~~~~iP~m~~~g~~~~~------a~ 121 (405)
T TIGR00786 48 LAGNLMNRGGLARRLLNFAKALVGHLRGGLGHVNVLACALFAAVSGSSVATAAALGSLLIPAMTKAGYPKAF------AA 121 (405)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHcCCCHHH------HH
Confidence 77899999999999998764 6777788888889999999987 5666666554 555776444222 23
Q ss_pred HHHhhhccccccccccchh---hhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCcccccccccCCc
Q 040250 102 VIAANAGGVWSPIGDVTTT---MLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSNVLASEQMAPR 177 (395)
Q Consensus 102 ~~~an~gg~~tpiG~~~n~---i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 177 (395)
++.+..++..+. .|+|. +.+...++++.||+.....|..+.........+++ |+++.+.++.+ +.++..++.
T Consensus 122 av~a~~~~~g~l--~Pp~~~~i~~a~~~~i~~~~~~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 197 (405)
T TIGR00786 122 GVIAASGIIGPL--IPPSIVMIIYGVAAGVSIAKLFIAGILPGLLLALSLMLTIWWVARRLGYPRPPKA--SLRQRLRAF 197 (405)
T ss_pred HHHHHHhccccc--cCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc--CHHHHHHHH
Confidence 334444333332 34443 33445689999998755556655444443444433 32211111111 111111111
Q ss_pred hhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccC------chHHHHHHHH
Q 040250 178 GQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIN------MQVPLFFLGI 251 (395)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~------w~~l~~~~g~ 251 (395)
++....+.+..+++....... .++...+..+....++.+...+ ++.+++|..+.++ |..++.+++.
T Consensus 198 ~~~~~~l~l~~~vi~~~~~g~--~~~~~a~~~~~~~alli~~~~~------~~~~~~~~~~~l~~~~~~~~~i~lii~aa 269 (405)
T TIGR00786 198 RKSIWALLLPVLIIGGIFSGI--FTPTEAAAVAAVYALALSTFVY------RELTLKSLCDVLLESLRTTSMVMLIIAGA 269 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222211122121 2333333333333333321111 1245566555555 7888889899
Q ss_pred HHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCChhHH--HHHHHH
Q 040250 252 LLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDSEFW--QLIAYC 323 (395)
Q Consensus 252 ~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~~~~--~~l~~~ 323 (395)
..+.+.++++|+.+.+++.+.+...+.. .+.++..+++.+++|++....+.|+... .+.|.++ .+ ....++
T Consensus 270 ~~~~~vL~~tG~~~~ia~~l~~~~~~~~~~~~li~~~~~ilg~~~~~~a~~~i~~PI~~p~a~~~Gv~p-~~~~~~~~~~ 348 (405)
T TIGR00786 270 TVFSWLLTHAQIPQRLADLLANAISSPIVFLIMINILLLIVGMFMDLTPAILILTPILLPVAVHLGIDP-VHFGVMFVLN 348 (405)
T ss_pred HHHHHHHHHcChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHH
Confidence 9999999999999999999998654433 2356677788899999999888999853 4555543 33 344555
Q ss_pred Hhhcccccc-ccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Q 040250 324 ASTGGSMLI-IGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAA 370 (395)
Q Consensus 324 ~~~gg~~tp-igs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~ 370 (395)
+.+ +.+|| +|. +-....+..+++++|+.|.++|+.++..++..++
T Consensus 349 ~~~-g~ltPPvg~-~~~~~~~~~~~~~~~~~k~~~p~~~~~~~~~~~~ 394 (405)
T TIGR00786 349 LEI-GLLTPPVGT-NLFVASGVAKMSITEVTRALWPFLLAQFLVLLLV 394 (405)
T ss_pred HHH-hcCCCCchH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 46776 773 3335567789999999999999988777665544
No 25
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=99.78 E-value=1.7e-17 Score=165.98 Aligned_cols=170 Identities=18% Similarity=0.138 Sum_probs=139.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcc--cCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC
Q 040250 199 TGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSR--INMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP 276 (395)
Q Consensus 199 ~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~--v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~ 276 (395)
.++|....++.+..++.+.+ .++++|+.++ ++|+++++++|++++++++++||+.+++++++.+..+
T Consensus 18 ~~i~~~~~al~~~~ll~~~g-----------v~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~l~~~~~ 86 (416)
T cd01118 18 FGLPEAVWAVLGAVIALILG-----------LVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAALAARWAR 86 (416)
T ss_pred CCCChHHHHHHHHHHHHHHC-----------CCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhC
Confidence 45788877877776665543 3688999876 6799999999999999999999999999999998765
Q ss_pred chh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCC----hhHHHHHHHHHhhccccccccchhhHHHhccc
Q 040250 277 NID-----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQD----SEFWQLIAYCASTGGSMLIIGSAAGVAFMGME 345 (395)
Q Consensus 277 ~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~----~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~ 345 (395)
+.. .+++++.++|.|+||++.++++.|+... .+.+.+ .+..+...++++.|+..||+|+++|.+..+..
T Consensus 87 ~~~~~l~~~~~~~~~~ls~~~sn~a~~~~~~Pi~~~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~~~n~i~~~~~ 166 (416)
T cd01118 87 GSGRKLFTLIVLLGAAVTAFFANDGTALILTPIVIALLRALGAKKNRTLPFLYACAFIADAASLPLPISNLVNIVTAGYF 166 (416)
T ss_pred CChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHcccccccccCCchHHHhHhcc
Confidence 432 4677889999999999999999999753 233322 24566778889999999999999999998888
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040250 346 KVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHF 379 (395)
Q Consensus 346 ~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~ 379 (395)
++++.||+|+++|.++++.++.+.+.+.++|...
T Consensus 167 ~i~~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~ 200 (416)
T cd01118 167 GIGFTEYAALMFLPSIVSILATYVVLYLFFRRAL 200 (416)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998888777777765544
No 26
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.78 E-value=7.6e-16 Score=153.62 Aligned_cols=319 Identities=13% Similarity=0.166 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHH---HHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HhCCCC
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTD---NITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVR----KLVPPS 91 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~---~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~----~l~~~~ 91 (395)
+|++.+++++...++.++|||..|+.++ |..|+++++..+.+.+.+.++|.+.+|...+..+.|+.. +++-+
T Consensus 48 ~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~lli~i~~~lfs~~~~~~~~~i~~~PI~i~ia~~lG~d- 126 (433)
T PRK09412 48 IDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYITFLAPIVTYLFTFLAGTGHIAFSTLPVIAEVAKEQGIR- 126 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHcCCC-
Confidence 6899999999999999999999998887 556889999999999999999988888776677777764 44333
Q ss_pred hhhHHHHHHHHHHhhhccccccccccchhhhhccC--CCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhcccccc---C-
Q 040250 92 EYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG--QISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQ---E- 164 (395)
Q Consensus 92 ~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~--~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~---~- 164 (395)
+.+. +....+++|+|+..+|+|.++|.++.... ++++.|++.+..|..++..++.+.+.+++ |+.+++.+ +
T Consensus 127 ~~~~--l~~~~~~a~iG~~aspin~~tv~ia~~ia~~gi~f~~~~~~~lp~~iv~~~~~~~~~~~ya~kv~~~P~~~~~~ 204 (433)
T PRK09412 127 PSRP--LSIAVVASQIAITASPISAAVVAMSSVLEPLGVSYLTLLMVVIPSTLLAVMVAAFVTNKMGKELKDDPEYQKRL 204 (433)
T ss_pred Ccch--HHHHHHHHHHhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHh
Confidence 2211 34688999999999999888776665544 89999999999998887776655554333 32221111 0
Q ss_pred -Cccc--c--cccccCCchhHHHHHHHhHHHHHHHhhhhc----CC------ChH-HHH--HHHHHHHHHHHHhhhccch
Q 040250 165 -SSNV--L--ASEQMAPRGQLVSTVGTGALIFVPVFKALT----GL------PPY-MGI--LLGLGVLWILTDAIHYGES 226 (395)
Q Consensus 165 -~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i------~~~-~~a--~~~~~~l~l~~~~~~~~~~ 226 (395)
.++. + ++++.++|+|....+++..+.......... ++ +.+ ... ++..+++..+.
T Consensus 205 ~~~~~~~~~~~~~~~t~r~kl~l~if~~~i~~~~i~G~~~~~~~~w~~~~~~~~~e~~~~~fl~~gii~glv-------- 276 (433)
T PRK09412 205 AEGLVKLRGEKEIEIKPGAKLSVILFLLGVVAVVLYAIFPSLRPGFIEGPPLGMTEAIQIFMLSAAALIVLL-------- 276 (433)
T ss_pred hchhhccccccccccCHhHHHHHHHHHHHHHHheeeeeccccccccccCCCCCHHHHHHHHHHHHHHHHHHH--------
Confidence 0000 0 112334455555444333321111111111 23 111 122 23333332221
Q ss_pred hhccCCHHHHhcc-cCc---hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHH-HHHHHHHHHh-cCHHHHHH
Q 040250 227 ERQKLKVPQALSR-INM---QVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIA-SAIGVVSAVI-DNVPLVAA 300 (395)
Q Consensus 227 ~~~~~~~~~~~~~-v~w---~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~-~~~~~lS~~i-~N~p~~~~ 300 (395)
.+++.+|..++ ..+ ..++++.|+.-.+..+.+.+ .|.+.+.+.+.++..+.+. ....+.+.++ +|.+++-+
T Consensus 277 --~gl~~~~ia~~~~F~~G~~~~v~iiGlA~~i~vi~~~~-~dtI~~~l~~~l~~~p~~~a~~mfiv~~~i~gqAa~~pI 353 (433)
T PRK09412 277 --CKIDTDEILSSSVFKSGMSACICILGVAWLGDTFVNAH-IDEIKETAGSLIQSYPWLLAVALFFASALLYSQAATAKA 353 (433)
T ss_pred --hCCCHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11333443332 334 55667888888888887776 6999999988765443222 2222222233 44444455
Q ss_pred HhhhhcccCCCCChhHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHH
Q 040250 301 TIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRK 355 (395)
Q Consensus 301 ~~pi~~~~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~ 355 (395)
|.|+... .|.++. ...+++-.+-|...+|. ++.-+...+..++++.++.|+
T Consensus 354 m~PLad~--lGi~rq-~~Vla~q~g~gn~i~Pt-s~~~ma~l~~~~i~~~~w~k~ 404 (433)
T PRK09412 354 LMPLALA--LGVPPL-TAIASFAAVSGLFVLPT-YPTLLAAVEMDDTGTTRIGKY 404 (433)
T ss_pred HHHHHHH--cCCCHH-HHHHHHHHhccCEECCC-cHHHHHHHhccCCCcchhhhh
Confidence 5666543 344332 23445555555446776 233333345566777666664
No 27
>PRK15445 arsenical pump membrane protein; Provisional
Probab=99.77 E-value=2.2e-17 Score=165.62 Aligned_cols=172 Identities=15% Similarity=0.093 Sum_probs=140.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc--ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC
Q 040250 199 TGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS--RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP 276 (395)
Q Consensus 199 ~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~--~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~ 276 (395)
.++|....++++..++.+.+ ..+++|+.+ +++|+++++++|+|++++++++||+.|++++++.+..+
T Consensus 19 ~~ip~~~~all~~~ll~~~g-----------v~~~~~a~~~~~~~~~~i~l~~g~~vi~~~l~~tGl~~~ia~~~~~~~~ 87 (427)
T PRK15445 19 KGLGIGWSALLGAVLALLTG-----------VVSLGDVPVVWGIVWNATLTFIAIIIISLLLDEAGFFEWAALHVARWAK 87 (427)
T ss_pred CCCChHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC
Confidence 46888888888887665543 368889874 79999999999999999999999999999999998765
Q ss_pred ch-h----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCCh----hHHHHHHHHHhhccccccccchhhHHHhccc
Q 040250 277 NI-D----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDS----EFWQLIAYCASTGGSMLIIGSAAGVAFMGME 345 (395)
Q Consensus 277 ~~-~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~----~~~~~l~~~~~~gg~~tpigs~an~i~~~~~ 345 (395)
+. . .+++.++++|.++||+++++++.|+... .+.+.++ +.....+++++.|+..||+|+++|.+..+..
T Consensus 88 ~~~~~l~~~~~~~~~~ls~~~sn~~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~ig~~~N~i~~~~~ 167 (427)
T PRK15445 88 GNGRKLFVYIVLLGAAVAALFANDGAALILTPIVLAMLLALGFSKKATLAFVMAAGFIADTASLPLVVSNLVNIVSADYF 167 (427)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhcccccccccCCchHhhhhccC
Confidence 42 2 4567899999999999999999999853 2333322 3345566778888889999999999988777
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040250 346 KVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSL 381 (395)
Q Consensus 346 ~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~ 381 (395)
+++|.||+|++.|.+++..++.+.+.+.++|.+.+.
T Consensus 168 ~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r~~~~~ 203 (427)
T PRK15445 168 GIGFAEYASVMVPVNLVSLAASLLVLWLYFRKDIPK 203 (427)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 899999999999999999998888888777665543
No 28
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=99.73 E-value=1.4e-14 Score=142.65 Aligned_cols=351 Identities=10% Similarity=0.044 Sum_probs=207.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---c--CCchhHHHHHHHHHHHHHHhhhhHHHH-H-
Q 040250 7 AVSELSRASA-EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---T--RKPRSLLWVVGFVTFFLSSILDNLTTT-I- 78 (395)
Q Consensus 7 ~~~~~~~~~~-~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~--~~~~~l~~~~~l~~~~lS~~~~n~~~~-~- 78 (395)
.-+++++.++ +..++-.+++..+.++..|++.|.+|.+.+.+. | |+|..+.....+++.+++-++++.++. +
T Consensus 7 ~~~~~~~~~~~~~~~~g~~i~~~~gf~~~M~~~G~~~~lv~~~~k~~~~~~~p~~v~~~t~~i~~~~~l~~~sat~~~li 86 (388)
T TIGR00771 7 IYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGML 86 (388)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 3455555554 567899999999999999999999999998875 5 789999999999999999999887766 3
Q ss_pred ---HHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHH-HHHHhHHHHHHHHHHHHHHHHh
Q 040250 79 ---VMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLP-TMKSLFIPSAVSLAVPLALLSL 154 (395)
Q Consensus 79 ---i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~-~~~~~~p~~~v~~~~~~~~~~~ 154 (395)
.+.|+.++.+-++.. .....+++.+-...|+|++.+ ..+...+.+-.| ++.+..|..+...+......++
T Consensus 87 ~~~~l~P~l~~~G~~~~~-----aaavia~~~~l~i~P~~~~~~-~aa~~~~~~~~~~~~~~~ip~~i~~i~~~~~~~~~ 160 (388)
T TIGR00771 87 LMVTLFPTLVSLGVSRLS-----AVAVMASPGSIHSAMISEMSG-LAAQQVNMSHAPYNFHYMLPGAIGAIILTAIAHFF 160 (388)
T ss_pred HHHHHHHHHHHcCCCHHH-----HHHHHHhhhcccCCCcchHHH-HHHHHhCCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 346888888644322 122233333336678877754 554546788888 4444555444444444333344
Q ss_pred hhh-ccccccC-C-cccccccccCCchhHHHHHHHhHHHHHHHhhhhcC---CChHHHHHHHHHHHHHHHHhhhccchhh
Q 040250 155 TSE-VNRKGQE-S-SNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTG---LPPYMGILLGLGVLWILTDAIHYGESER 228 (395)
Q Consensus 155 ~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~a~~~~~~l~l~~~~~~~~~~~~ 228 (395)
.++ +++|... . ++.++++..++++.++..+-+.-++++..+.+... ++....+..+............|+.+-|
T Consensus 161 ~~k~~~kr~~~~~~~~~~~~~~~~~~~~~~allpl~p~iil~l~~g~~t~~~~~~~~~~~v~v~~~~~l~~~~~r~~n~~ 240 (388)
T TIGR00771 161 KQRGEDKKQAYIAHEKESEIKVIEGVPVLYAILPLIPLIILLLFIGGTGLQQVPLHEWTKMGVPQAMLIGAEFGRIVNRI 240 (388)
T ss_pred HhcccchhcccccccccccchhhcccchHHHHHHHHHHHHHHHHhccccccCCCccHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 332 2222111 1 11111111122233333312221111222333323 4334344444333211111111111101
Q ss_pred c-cCCHHHHhc---ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHh-cCHHHHH
Q 040250 229 Q-KLKVPQALS---RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVI-DNVPLVA 299 (395)
Q Consensus 229 ~-~~~~~~~~~---~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i-~N~p~~~ 299 (395)
+ ..+.++.++ +..-.+++.+.+..+.++.++.+|+.|.+++++.+...+.. ...++..++..++ ++.+...
T Consensus 241 ~~~~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~~~~~~~~ll~~~l~~~~lg~~~~s~~a~~~ 320 (388)
T TIGR00771 241 SPVKITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAKESGLGNIFVMWGATIGPFLMALITGSGNAPFI 320 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 0 001123222 12234567777778889999999999999999998744432 2334445577899 4798888
Q ss_pred HHhhhhcc--cCCCCChh-HHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHH
Q 040250 300 ATIGMYDL--TSLPQDSE-FWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGY 364 (395)
Q Consensus 300 ~~~pi~~~--~~~~~~~~-~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~ 364 (395)
.+.|+... .++|.++. ......++..+|....|+| ++-.+..+..+.+..|..|..+|..++..
T Consensus 321 ~~~PIl~pia~~~Gidpv~~gi~~~i~~~iG~~tpPv~-~~l~v~~gia~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 321 AFNTAIPPHAVELGYTHVNLGMPMAIAGALGRTASPIA-GVVVVCAGLAMVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Confidence 88888752 56666532 2344555666776666775 66667777889999999999999987653
No 29
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=99.73 E-value=4.4e-16 Score=146.42 Aligned_cols=351 Identities=16% Similarity=0.173 Sum_probs=216.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh-c-CCchhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT-T-RKPRSLLWVVGFVTFFLSSILDNLTTTIVM 80 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~-~-~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~ 80 (395)
|++++-||+.++ .+++++++.|..=...|++ +.-++-.|+. + +|...+.+.+++.++++|+|+|..++++.+
T Consensus 82 sp~~v~hEi~~N----~eViLLL~FMVAGIYFMK~--lLlf~FTklLl~irSK~~LSL~Fc~~aAfLSAFLDALTV~AVi 155 (515)
T PF06450_consen 82 SPEQVYHEIAAN----FEVILLLMFMVAGIYFMKQ--LLLFVFTKLLLKIRSKIVLSLAFCFAAAFLSAFLDALTVTAVI 155 (515)
T ss_pred CHHHHHHHHHhC----hHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhheee
Confidence 567777777754 5666666666554455554 3444444443 3 566677789999999999999999988876
Q ss_pred HH-------HHHHh--C-C---------C-----------Chhh---HHHHHHHHHHhhhccccccccccchhhhhccCC
Q 040250 81 VS-------LVRKL--V-P---------P-----------SEYR---KLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQ 127 (395)
Q Consensus 81 ~P-------i~~~l--~-~---------~-----------~~~~---~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~ 127 (395)
+. ++++. + + + +++| |-++|-.++++.+||.+|++|.|||++++...+
T Consensus 156 IsVa~GFY~iYHkvaSg~~~~~~~d~~~D~~v~~~~r~~Le~FRaFLRsLmMH~~VGTALGGV~TmVGEPQNLiIa~~ag 235 (515)
T PF06450_consen 156 ISVAVGFYSIYHKVASGKDFHDDHDHTDDSKVDELNREDLEQFRAFLRSLMMHAAVGTALGGVMTMVGEPQNLIIAKQAG 235 (515)
T ss_pred eEeeehhhhhhhhhhcCCCCCCccCCccchhhhhhhHHHHHHHHHHHHHHHHhcccchhhcceeeecCCchhhhhhhhcC
Confidence 53 33443 1 0 0 0111 345788999999999999999999999999999
Q ss_pred CChHHHHHHhHH---HHHHHHHHHHHHHHhhh------hccccccC-Cccc--ccccccCCchhHHH-HHHHhHHHHHHH
Q 040250 128 ISTLPTMKSLFI---PSAVSLAVPLALLSLTS------EVNRKGQE-SSNV--LASEQMAPRGQLVS-TVGTGALIFVPV 194 (395)
Q Consensus 128 isf~~~~~~~~p---~~~v~~~~~~~~~~~~~------~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 194 (395)
..|.||+..+.| |.+++-++++.+.-.+| +.+++.++ .++. ++++++++++|... ...+..+|+.
T Consensus 236 W~F~eFflrmaPVt~PVl~~Gl~tc~l~Ek~~~fGYG~~lP~~Vr~iL~~~~~~~~~~rt~~~~~~L~vQa~~~vwLi-- 313 (515)
T PF06450_consen 236 WDFGEFFLRMAPVTLPVLICGLLTCVLVEKFKWFGYGAKLPENVRQILEEFDKEEDAKRTKQDKAKLIVQALIGVWLI-- 313 (515)
T ss_pred CCHHHHHHhhccchHHHHHHHHHHHHHHHHhhhcCCcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--
Confidence 999999999988 55566556655553221 11221111 1111 12223333333322 1222333322
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHh-cccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Q 040250 195 FKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQAL-SRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDA 273 (395)
Q Consensus 195 ~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~-~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~ 273 (395)
..-.+|+.. +.++|..++.+...+-...|+ ....+++ +..|...++- -.|.+++.+.+..+.+.+.++...
T Consensus 314 ~~LA~HlA~--VGlIGLsVIil~Taf~Git~E----H~iGkAFeEaLPFTALL~--VFF~vVaVI~dQ~LF~PiI~~VL~ 385 (515)
T PF06450_consen 314 VALAFHLAE--VGLIGLSVIILATAFCGITDE----HAIGKAFEEALPFTALLV--VFFAVVAVIIDQHLFTPIIQFVLS 385 (515)
T ss_pred HHHHHHHHH--HhHHHHHHHHHHHHhcCCcch----hhhhHhHhhccchHHHHH--HHHHHHHHHhhhhhhHHHHHHHHc
Confidence 122234432 456677666555432100111 1223333 3577777653 447779999999999999999988
Q ss_pred hcCch--hHHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCChhHHHHHHHHHhhccccccc----cchhhHHHh-c-
Q 040250 274 HIPNI--DLIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDSEFWQLIAYCASTGGSMLII----GSAAGVAFM-G- 343 (395)
Q Consensus 274 ~~~~~--~~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~~~~~~l~~~~~~gg~~tpi----gs~an~i~~-~- 343 (395)
.-++. ..+++..+++|++.||+-+....+.-... .+-..+..+.-.++.+.|.|.|+..+ |..+-.-.. +
T Consensus 386 ~~~~~Ql~~fy~aNGlLS~iSDNVFV~TVYI~E~k~A~~~G~Is~~qf~~LAVAINTGTNlPSVATPNGQAAFLFLLTSa 465 (515)
T PF06450_consen 386 AEGSSQLAMFYIANGLLSMISDNVFVATVYINEVKAALDAGVISREQFDLLAVAINTGTNLPSVATPNGQAAFLFLLTSA 465 (515)
T ss_pred CCCccchhHHHHhhhhHHhhccceeEEEEeHhhHHHHHHcCCcCHHHHhhHHhhhhcCCCCCcCcCCCchhHHHHHHHHh
Confidence 65543 36788899999999998655433333321 11112334556678888988886444 433332221 1
Q ss_pred ---cccccHHHHHHHHHHHHHHHHHHHHH
Q 040250 344 ---MEKVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 344 ---~~~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
..+.+++++.+..+|++++...++..
T Consensus 466 lAPLirLSYgrMV~MAlPYTiVl~~vGl~ 494 (515)
T PF06450_consen 466 LAPLIRLSYGRMVWMALPYTIVLTLVGLL 494 (515)
T ss_pred hHHHHHHhHhhHHhHhccHHHHHHHHHHH
Confidence 25899999999999999988877754
No 30
>cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.
Probab=99.71 E-value=4e-16 Score=154.49 Aligned_cols=169 Identities=15% Similarity=0.243 Sum_probs=137.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh
Q 040250 200 GLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID 279 (395)
Q Consensus 200 ~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~ 279 (395)
..|...+++++..++.+.+ ..+++|+.++++|+++++++|+++++++++++|+.|++++++.+..++..
T Consensus 10 ~~~~~~~a~~~~~ll~~~g-----------~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~~~~ 78 (384)
T cd01117 10 RLDRWAIALLGAALMLLFG-----------VISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAGSPR 78 (384)
T ss_pred CCCHHHHHHHHHHHHHHhC-----------CCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcCCHH
Confidence 3556666777666655543 35789999999999999999999999999999999999999887654332
Q ss_pred ----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCC-hhHHHHHHHHHhhccccccccchhhHHHhccccccHHHH
Q 040250 280 ----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQD-SEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWY 352 (395)
Q Consensus 280 ----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~-~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~ 352 (395)
.+++.++++|.+++|.+.++++.|+... ...+.+ .+..+..++++++|+..||+|+++|.+..+..++++.||
T Consensus 79 ~l~~~~~~~~~~ls~~~~n~~~~~~~~Pi~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~~~i~~~~~ 158 (384)
T cd01117 79 RLLFLLVLLSGILSALLTNDTACLVFTPIVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASESGISFPFF 158 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcCCCCCHHHH
Confidence 4667889999999999999999999753 222322 356677899999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040250 353 FRKVSGFAFAGYAAGIAAYLAVNSLHF 379 (395)
Q Consensus 353 ~k~g~p~~lv~~~~~~~~~~~~~~~~~ 379 (395)
.++++|..+++..+...+.+.+++...
T Consensus 159 ~~~~~p~~i~~~~~~~~~~~~~~~~~~ 185 (384)
T cd01117 159 LAAMAPLALLGLLLLLILLLVLFPGEL 185 (384)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998888777777665543
No 31
>TIGR00935 2a45 arsenical pump membrane protein.
Probab=99.71 E-value=3.2e-16 Score=157.42 Aligned_cols=176 Identities=10% Similarity=-0.027 Sum_probs=134.7
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHh--cccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 040250 195 FKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQAL--SRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLD 272 (395)
Q Consensus 195 ~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~--~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~ 272 (395)
..+..+.+....++.+..++.+.+ ..+++|+. .+++|+++++++|+|++++++++||+.|++++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~l~~l~g-----------~~~~~~~~~~~~~~~~~l~~~~g~~ii~~~l~~tGl~~~ia~~l~ 84 (429)
T TIGR00935 16 IWQPVGLTIGASASSGAALAILAG-----------VVSRPDIPTVWGIVWNATATFFAVIIISLILDETGFFEWAAVHAY 84 (429)
T ss_pred HheecchHHHHHHHHHHHHHHHHh-----------cCCHHHHHHHHhhchhHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334455666554444444443433 23555543 25999999999999999999999999999999999
Q ss_pred hhcCchh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCC-hhHHHHHHHHHhhccccccccchhhHHHhcc
Q 040250 273 AHIPNID-----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQD-SEFWQLIAYCASTGGSMLIIGSAAGVAFMGM 344 (395)
Q Consensus 273 ~~~~~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~-~~~~~~l~~~~~~gg~~tpigs~an~i~~~~ 344 (395)
+..++.. .+++.++++|.++||++.++++.|+... .+.+.+ .+.++.+++++++||+.||+|+++|.+..+.
T Consensus 85 ~~~~~~~~~l~~~~~~~~~~ls~~~~n~~~~~i~~Pi~~~l~~~~~~~~~~~~~~~~~~a~~gg~~t~iG~~~n~i~~~~ 164 (429)
T TIGR00935 85 RLSNGRGWLLFTFICLLGAVVSAFFANDGAALILTPIVIAMCEVLGFNPRTILAFVVAAGFIADTASLPLIVSNLVNIVS 164 (429)
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHHHhCCCCcchHHHHHHHHHHhhHHhcCCCCchhhhhhc
Confidence 8765432 4678899999999999999999999753 233322 2456778999999999999999999988754
Q ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040250 345 ---EKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSL 381 (395)
Q Consensus 345 ---~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~ 381 (395)
.+++|.||++++.|.+++..++...+.+.++|.+.++
T Consensus 165 ~~~~~i~f~~f~~~~~p~~l~~l~~~~~~~~~~~~~~~~~ 204 (429)
T TIGR00935 165 ADYFGLGFAEYTSHMLPGNILVLVATLLVLRLYFRNDIPK 204 (429)
T ss_pred ccccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCc
Confidence 3799999999999999999988877777766554433
No 32
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=99.71 E-value=1.7e-13 Score=136.90 Aligned_cols=341 Identities=11% Similarity=0.091 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---c--CCchhHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHhCC
Q 040250 20 EIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---T--RKPRSLLWVVGFVTFFLSSILDNLTTTI-----VMVSLVRKLVP 89 (395)
Q Consensus 20 ~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~--~~~~~l~~~~~l~~~~lS~~~~n~~~~~-----i~~Pi~~~l~~ 89 (395)
..-..++..+-++..|+++|..|.+.+-.. + |+|+.++...++++.++|.+++|..... ++.|+.++++-
T Consensus 78 ~lGl~Im~~~gFa~yM~~iGa~~~lv~l~~~pl~~ir~p~~~l~~~~l~~~~~~~~i~Sa~glg~~lm~~l~Pvl~~~Gv 157 (455)
T PRK10654 78 DLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGI 157 (455)
T ss_pred cHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCC
Confidence 355567788889999999999998877654 2 5788888888999999999998764332 25699999876
Q ss_pred CChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHH-Hhhhhc-cccccCCcc
Q 040250 90 PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALL-SLTSEV-NRKGQESSN 167 (395)
Q Consensus 90 ~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~ 167 (395)
+++. . ....++..|.-+.|.++..| ++++..|.+..|++.+.-.|+.+...+.+.+. +++.+. ++|++..++
T Consensus 158 ~~~~----a-a~v~~~~~g~~~~P~s~~~~-laA~~~g~~~~~~~~~~~~p~~i~~~i~~~i~~~~~~~~~dkk~~~~~~ 231 (455)
T PRK10654 158 SRGA----A-AAICASPAAIILSPTSGDVV-LAAEASEMPLIDFAFKTTLPISIAAIIGMAIAHFFWQRYLDKKENISHE 231 (455)
T ss_pred CHHH----H-HHHHHHHhcccCCCCcchHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccc
Confidence 6433 2 22466777777888887776 66667788988877766556654443333333 333221 111110100
Q ss_pred cccccccCCchhHHHHHHHhHH-HHHHHhhhhcCCChHHHH--HHHHHHHHHHHHhhhccchhhccCCHHHHhcccCc--
Q 040250 168 VLASEQMAPRGQLVSTVGTGAL-IFVPVFKALTGLPPYMGI--LLGLGVLWILTDAIHYGESERQKLKVPQALSRINM-- 242 (395)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~a--~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w-- 242 (395)
.++.++.+++...+..+.-+.- +++..+.+..+...+... .....+-.++. . .++.++||..+.+++
T Consensus 232 ~~~~~~~~~~~p~~yallPllPLilll~f~~~~~~~~~v~~~~~~s~~i~~~~~-~-------~r~~~~k~v~~~l~~~~ 303 (455)
T PRK10654 232 MLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVICMLLAAVLE-F-------LRSFNTKKVFSGLEVAY 303 (455)
T ss_pred ccccchhccccccHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHH-H-------HhCCCHHHHHHHHHHHH
Confidence 0111121111112222221221 111222332222222111 11111111111 1 134577888777666
Q ss_pred --------hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHh-cCHHHHHHHhhhhcc--
Q 040250 243 --------QVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVI-DNVPLVAATIGMYDL-- 307 (395)
Q Consensus 243 --------~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i-~N~p~~~~~~pi~~~-- 307 (395)
+++.++.+..+.+++++.+|+.+.+++.+.+.-.+.. .+..++.+.+..+ +|.+....+.|+...
T Consensus 304 ~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~lg~~~~~illv~~il~~l~~~~~GSg~a~~~af~pi~~pia 383 (455)
T PRK10654 304 RGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSFGSAGIILMLVLVILTMLAAITTGSGNAPFYAFVELIPKLA 383 (455)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 5888888999999999999999999999998743432 2334555556666 777777777788742
Q ss_pred cCCCCChh-HHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 308 TSLPQDSE-FWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVN 375 (395)
Q Consensus 308 ~~~~~~~~-~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~ 375 (395)
.+.|.++. ...++..++++|.+..|++ ..-+...+..+++..|+.|.+.+..++..++.+++.+.++
T Consensus 384 ~~lG~~pv~~~~~~~~~~~~G~~~sPvs-~~ii~~ag~a~~~~~~ivKrt~ip~ii~~iv~~i~~~~~~ 451 (455)
T PRK10654 384 HSSGINPAYLTIPMLQASNLGRTISPVS-GVVVAVAGMAKISPFEVVKRTSVPVLVGLLIVIVATEIMV 451 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCcCCcch-hhHhhhhcccCCCHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 45666543 3456777888888877774 3333344668899999999977777777777766555544
No 33
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=99.69 E-value=3.7e-14 Score=140.94 Aligned_cols=133 Identities=12% Similarity=0.185 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHhCCCC
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTDNI---TTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLV----RKLVPPS 91 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~~i---~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~----~~l~~~~ 91 (395)
+|+++++++++..++.++|||.+|+..+++ .|+++++..+.+.+.+++.|.+.+|...++.+.|+. ++++-++
T Consensus 44 ~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~llipii~~lfs~~~g~~~~~l~f~PI~i~la~~lG~d~ 123 (430)
T TIGR00770 44 FDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYITILAPSVTYFLTILAGTGHVVYSTLPVIAEVAKEQGIKP 123 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999998744 478899999999999999999999987777777776 4444332
Q ss_pred hhhHHHHHHHHHHhhhccccccccccchhhhhcc--CCCChHHHHHHhHHHHHHHHHHHHHHHHh
Q 040250 92 EYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIH--GQISTLPTMKSLFIPSAVSLAVPLALLSL 154 (395)
Q Consensus 92 ~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~--~~isf~~~~~~~~p~~~v~~~~~~~~~~~ 154 (395)
.+ . +.....++|+|+..+|+++++|..++.. .++++.|++.+..|+.++...+...+..+
T Consensus 124 -i~-~-~ai~~~aa~iG~~as~in~~~~~~ig~~~~~Gi~f~~~l~~rip~~~v~l~v~~~~v~~ 185 (430)
T TIGR00770 124 -ER-P-LSLAVVSSQIAITASPVSAAVVFMSAILEPLGIEYLDLLMVTIPSTFLGCMLTAFFVNF 185 (430)
T ss_pred -hh-H-HHHHHHHHHHHHHhhcccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 2 3568899999999999988877766442 48999999999999888777665554433
No 34
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.3e-15 Score=149.96 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=144.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc--ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC
Q 040250 199 TGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS--RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP 276 (395)
Q Consensus 199 ~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~--~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~ 276 (395)
.+++..+.+..|+.+++..+ ..+++|+.+ .++|++++++.|+++++..++++|..||.+.++.+...
T Consensus 22 ~~~~~~~~a~~Ga~l~l~~g-----------iv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~~~v~~s~ 90 (424)
T COG1055 22 RKLPRAWAALLGALLALFLG-----------IVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLAIKMVKRSK 90 (424)
T ss_pred CcCchHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 56888888888887766654 257888887 79999999999999999999999999999999999875
Q ss_pred ch-h----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCC-hhHHHHHHHHHhhccccccccchhhHHHhcccccc
Q 040250 277 NI-D----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQD-SEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVD 348 (395)
Q Consensus 277 ~~-~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~-~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~ 348 (395)
+. . .+..+++++|+|.+|+.++.++.|+... ...+.+ .++.++..+++|.||..||+|+|+|++.....+++
T Consensus 91 g~~~~L~~~l~ll~a~~SA~l~N~tt~LlltPivl~~~~~~~~~~~p~l~~~~f~aN~gg~~t~iGdp~niii~~~~gis 170 (424)
T COG1055 91 GSGLKLLLLLVLLGALLSAFLDNDTTALLLTPIVLAVARALGVNPVPFLIAEVFIANIGGLATPVGDPPNIIIASAAGIS 170 (424)
T ss_pred CCcchHHHHHHHHHHHHHHHHcccceeehhhhHHHHHHHHcCCCccHHHHHHHHHHcccccccccCChHHHHHHHhcCCC
Confidence 42 2 4678899999999999999999999853 344444 47788899999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040250 349 FFWYFRKVSGFAFAGYAAGIAAYLAVNS 376 (395)
Q Consensus 349 ~~~~~k~g~p~~lv~~~~~~~~~~~~~~ 376 (395)
|.||.+.-.|.+++++++..++.+.++|
T Consensus 171 F~~f~~~m~~p~l~~li~~~~vl~~~~~ 198 (424)
T COG1055 171 FNDFLANMFPPSLISLIATLVVLYLLFR 198 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888883
No 35
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.65 E-value=4.2e-15 Score=145.41 Aligned_cols=172 Identities=19% Similarity=0.227 Sum_probs=134.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCc
Q 040250 198 LTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPN 277 (395)
Q Consensus 198 ~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~ 277 (395)
..+.++.....+++.++.+.+. . .....+.+|..+.++|++++++.|++. ++++++||..|++++++.+..++
T Consensus 15 ~~~~~~~~~~~~~a~~~~l~g~----~--~~~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~ 87 (351)
T PF03600_consen 15 RKKIPVVAAALLGALLVALFGF----P--GFGVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGG 87 (351)
T ss_pred HHhhhHHHHHHHHHHHHHHHHh----c--cccccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCC
Confidence 3456665555555544444411 0 123467899999999999999999999 99999999999999999998766
Q ss_pred hh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCC-hhHHHHHHHHHhhccccccccchhhHHHhccccccH
Q 040250 278 ID-----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQD-SEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDF 349 (395)
Q Consensus 278 ~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~-~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~ 349 (395)
.. .++++++++|.+.||++++..+.|+... .+.+.+ .+....+++++|+||..||+|+|+|++..+..++++
T Consensus 88 ~~~~l~~~~~~~~~~lS~~~~N~~~v~~~~Pi~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~~~~~~ 167 (351)
T PF03600_consen 88 KPWRLLLLLMLVTALLSAFLDNTTVVLIMIPIVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIANASGLPF 167 (351)
T ss_pred CHHHHHHHHHHHHHHHHHhhhcchHHHhhHHHHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhhhccccc
Confidence 42 4567889999999999999999999853 333333 356788999999999999999999988877777888
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040250 350 --FWYFRKVSGFAFAGYAAGIAAYLAVNS 376 (395)
Q Consensus 350 --~~~~k~g~p~~lv~~~~~~~~~~~~~~ 376 (395)
.||.+.++|..+++.+......+...+
T Consensus 168 ~~~~~~~~~~p~~i~~~~~~~~~~~~~~~ 196 (351)
T PF03600_consen 168 FGFDFFALGLPAVIVGLLVLIFILYFLFR 196 (351)
T ss_pred chhhhHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 999999999998887776655544443
No 36
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump.
Probab=99.65 E-value=2.9e-15 Score=148.88 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=140.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh
Q 040250 200 GLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID 279 (395)
Q Consensus 200 ~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~ 279 (395)
.+|....++.+..++.+.+ ..+++|+.++++|+++++++|++.+++++++||+.+++++++.+..++..
T Consensus 8 ~~~~~~~al~~~~~l~~~g-----------~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~ 76 (396)
T cd00625 8 KLPRAVVALLGAVLLVLLG-----------VVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSR 76 (396)
T ss_pred cCCHHHHHHHHHHHHHHhc-----------CCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCc
Confidence 3567767776665554443 36889999999999999999999999999999999999999977654332
Q ss_pred ----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCCh--hHHHHHHHHHhhccccccccchhhHHHhccccccHHH
Q 040250 280 ----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDS--EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFW 351 (395)
Q Consensus 280 ----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~--~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~ 351 (395)
.+...+.++|++++|.+.+.++.|+... .+.+.++ ...+...++++.|++.||+|+++|.+..+.++++++|
T Consensus 77 ~~~~~~~~~~~~ls~~~s~~~~~~il~Pi~~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~i~~~~ 156 (396)
T cd00625 77 RLLLLLMLLTAALSAFFSNDATAVLLTPIVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIASLSGLGFLD 156 (396)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEeCCCCCHHH
Confidence 3567788999999999999999999753 2333333 4567788899999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040250 352 YFRKVSGFAFAGYAAGIAAYLAVNSLHFSL 381 (395)
Q Consensus 352 ~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~ 381 (395)
|+|++.|..++..++...+.+.+++.+.+.
T Consensus 157 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 186 (396)
T cd00625 157 FLAFMAPPALGLLLLLLGLLYLLFRKKLLL 186 (396)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998888888888665544
No 37
>PLN00137 NHAD transporter family protein; Provisional
Probab=99.64 E-value=7.3e-15 Score=146.20 Aligned_cols=173 Identities=12% Similarity=0.137 Sum_probs=130.5
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccC------chHHHHHHHHHHHHHHHHHhCHHHHHH
Q 040250 195 FKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIN------MQVPLFFLGILLSVSSLEAAGLMRKIG 268 (395)
Q Consensus 195 ~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~------w~~l~~~~g~~~l~~~l~~tG~~~~la 268 (395)
..+.++++....++.+++++.+.... +..+.++..+.+| |++++++.|+|++++.++++|+.|+++
T Consensus 21 ~e~~~~i~~~~~al~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~l~~~g~f~~~a 92 (424)
T PLN00137 21 FEESLAFNKSGVALLMAVSLWVIRAI--------GAPSLEIVTLELRHALAEVSEIVFFLLGAMTIVEIVDAHQGFKLVT 92 (424)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHH--------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 33345788888888888776554321 0124456667788 999999999999999999999999999
Q ss_pred HHHHhhcCchh---HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCChhH-HHHHHHHHhhccccccccchhhHHHh
Q 040250 269 NYLDAHIPNID---LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDSEF-WQLIAYCASTGGSMLIIGSAAGVAFM 342 (395)
Q Consensus 269 ~~l~~~~~~~~---~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~~~-~~~l~~~~~~gg~~tpigs~an~i~~ 342 (395)
+++.+. +... .+.++++++|+++||+.++.++.|+... ....+ .+. ...+++++|+||..||+|+|+|++..
T Consensus 93 ~~~~~~-~~~~l~~~~~~~~~~lS~~l~N~tt~l~~~p~~~~~~~~~~~-~~~~~~~~~~aaNiGg~~TpiGnp~NllI~ 170 (424)
T PLN00137 93 DSITTR-SPRTLLWVVGFITFFLSSILDNLTTTIVMVSLLRKLVPPSEY-RKLLGAVVVVAANAGGAWTPIGDVTTTMLW 170 (424)
T ss_pred HHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHhccccceeccCCCcCeeeeh
Confidence 999987 3222 4678899999999999999999999753 12111 233 45678999999999999999999888
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 343 GMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 343 ~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
+..++++.||+..-.|..++..++.+.+.+.+++.
T Consensus 171 ~~~~lsf~~f~~~l~~P~li~~lv~~~i~~~~~~~ 205 (424)
T PLN00137 171 IHGQISTLPTMQGLFLPSAVSLAVPLALMSLTSEE 205 (424)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77789999977666666666665555555555544
No 38
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=99.64 E-value=9.6e-15 Score=145.31 Aligned_cols=173 Identities=12% Similarity=0.081 Sum_probs=133.9
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHH---h---cccC-chHHHHHHHHHHHHHHHHHhCHHHHH
Q 040250 195 FKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQA---L---SRIN-MQVPLFFLGILLSVSSLEAAGLMRKI 267 (395)
Q Consensus 195 ~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~---~---~~v~-w~~l~~~~g~~~l~~~l~~tG~~~~l 267 (395)
..+..+++....+++++.++.+.+. .+.+|+ . +..| |++++++.|++.+++.++++|..|++
T Consensus 19 ~e~~~~~~r~~~al~ga~~~~~~~~-----------~~~~~~~~~~~~~~~~d~~~ti~~LfgmMiiv~~l~~~g~f~~l 87 (420)
T TIGR00775 19 FEHIVRVNKSAIWLAMGGLMWLVCF-----------SHIPDVDHAALEEEIADMAQVIFFLFVAMAIVELIDAHKGFSAL 87 (420)
T ss_pred hcchhhhccHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCCcHHHH
Confidence 3334578888888988887766542 223343 3 6689 99999999999999999999999999
Q ss_pred HHHHHhhcCchh--HHHHHHHHHHHHhcCHHHHHHHhhhhcc-cCCCCChhHHHH--HHHHHhhccccccccchhhHHHh
Q 040250 268 GNYLDAHIPNID--LIASAIGVVSAVIDNVPLVAATIGMYDL-TSLPQDSEFWQL--IAYCASTGGSMLIIGSAAGVAFM 342 (395)
Q Consensus 268 a~~l~~~~~~~~--~~~~~~~~lS~~i~N~p~~~~~~pi~~~-~~~~~~~~~~~~--l~~~~~~gg~~tpigs~an~i~~ 342 (395)
+.++.+...... .+..+++++|+|+||+.++.++.|+... .+.++ .+...+ .++++|+||..||+|+|+|++..
T Consensus 88 a~~l~~~s~r~Ll~~l~l~t~~lSa~LdN~tt~ll~~Pv~l~i~~~~~-~~~ll~~~i~~AANiGG~~TpIGdP~Ni~i~ 166 (420)
T TIGR00775 88 VAWCVGKSRKKLLWLLGFLSFFLSAALDNLTSIIIIISILKRLVKARE-DRLLLGAICVIAVNAGGAWTPLGDVTTTMLW 166 (420)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCC-ccchHHhHHHHhcccccceeeCCCcchhHhH
Confidence 998877544211 4678899999999999999999999753 23322 244555 78999999999999999999998
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040250 343 GMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHF 379 (395)
Q Consensus 343 ~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~ 379 (395)
+..+++|.||+..-.|.+++++++.+.+.++.++...
T Consensus 167 ~~~~i~f~~f~~~l~~p~li~l~v~~~il~~~~~~~~ 203 (420)
T TIGR00775 167 INGKIRFSGIIMPLFVPSLVCVVVAGFCGQLFLPKRK 203 (420)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8778999988877777777777776666666565533
No 39
>TIGR00785 dass anion transporter. Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+.
Probab=99.63 E-value=7.4e-15 Score=148.19 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=131.2
Q ss_pred CChHHHHHHH-HHHHHHHHHhhhccchhhccCC---HHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC
Q 040250 201 LPPYMGILLG-LGVLWILTDAIHYGESERQKLK---VPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP 276 (395)
Q Consensus 201 i~~~~~a~~~-~~~l~l~~~~~~~~~~~~~~~~---~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~ 276 (395)
+|....++.+ ..++.+.+ ..+ ++|+.++++|++++++.|+|.++.++++||+.+++++.+.+..+
T Consensus 29 ~~~~~~a~~~~~~~l~l~g-----------~~~~~~~~~~~~~~~~~~v~l~~~~~~i~~al~~tGl~~~ia~~i~~~~~ 97 (444)
T TIGR00785 29 LPLPVTALLAIPIIAVLLG-----------VLSAFKFKNALSGFADPTIWLFFGAFILATALVKTGLGKRIAYKLVGKMG 97 (444)
T ss_pred CcHHHHHHHHHHHHHHHhc-----------cCCcchHHHHHHhcCCcHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHC
Confidence 6776666654 44444433 245 88999999999999999999999999999999999999999876
Q ss_pred c-hh-----HHHHHHHHHHHHhcCHH-HHHHHhhhhcc--cCCCCCh---------hHHHHHHHHHhhccccccccchhh
Q 040250 277 N-ID-----LIASAIGVVSAVIDNVP-LVAATIGMYDL--TSLPQDS---------EFWQLIAYCASTGGSMLIIGSAAG 338 (395)
Q Consensus 277 ~-~~-----~~~~~~~~lS~~i~N~p-~~~~~~pi~~~--~~~~~~~---------~~~~~l~~~~~~gg~~tpigs~an 338 (395)
+ .. .+...+.+.+.+.||++ +++++.|+... .+.+.++ ...+.+.++++.|+..||+|+++|
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~sn~ar~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~l~~~~~~~a~~g~~~t~~g~~~n 177 (444)
T TIGR00785 98 GTTLGLGYFLVFLETLLAPMWPSNTARAGGILLPIIKSLLPLLGSKPEKSPRKIGKYLMLGIAYSASIGSSGFLTGSAPN 177 (444)
T ss_pred CCChHHHHHHHHHHHHHHhhCchHhHhHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 5 21 24456678888999999 88999999853 2333222 234567888899999999999999
Q ss_pred HHHhccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 040250 339 VAFMGME------KVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHF 379 (395)
Q Consensus 339 ~i~~~~~------~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~ 379 (395)
++..+.. ++++.||++.+.|..++..+..+.+.+.+++...
T Consensus 178 ~i~~~~~~~~~g~~i~~~~~~~~~~p~~ii~~~~~~~~~~~~~~~~~ 224 (444)
T TIGR00785 178 ALAAGILSKILGIQISWGDWFLAGLPLGIILLLLVPLLLYVLFPPEL 224 (444)
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHcCccc
Confidence 9998763 3999999999999999988888877777776433
No 40
>cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.
Probab=99.59 E-value=5.4e-14 Score=140.59 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=138.1
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-
Q 040250 201 LPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID- 279 (395)
Q Consensus 201 i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~- 279 (395)
+|.+..++.+..++.+.+.. .+ ..+++|+.++++|+++++++|++.++++++++|..|++++++.+..++..
T Consensus 13 ~p~~~~a~~~~~~~~~~g~~---~~----~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~tG~~~~la~~~~~~~~~~~~ 85 (413)
T cd01116 13 VHRTVAALAGALWLVILGLA---TL----SPDLETIVSWVDWETLALLLGMMIIVSILSETGVFEYLAIWAVKISKGRPW 85 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHh---cC----CCCHHHHHHHccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCChh
Confidence 57777777777766565421 00 02388999999999999999999999999999999999999987654332
Q ss_pred ----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCC-hhHHHHHHHHHhhccccccccchhhHHHhccccccHHHH
Q 040250 280 ----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQD-SEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWY 352 (395)
Q Consensus 280 ----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~-~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~ 352 (395)
.+..++.++|.|++|.++++.+.|+... .+.+.+ ......+.+++++|+..||+|+++|.+..+.+++++.||
T Consensus 86 ~~~~~~~~~~~~ls~~~s~~~~~~i~~pi~~~i~~~~g~~~~~~~~~~~~~a~~g~~~tp~g~~~n~~~~~~~~i~~~~~ 165 (413)
T cd01116 86 RLLLLLGLLTAFLSAFLDNVTTVLLMVPVTIRLCEVLGLNPVPVLISEVIAANIGGAATLIGDPPNIMIGSAAGLTFNDF 165 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHccchhhccCCchhhhhhccCCCCHHHH
Confidence 3567788999999999999999999753 333433 245567788899999999999999999887788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040250 353 FRKVSGFAFAGYAAGIAAYLAVNSLHFS 380 (395)
Q Consensus 353 ~k~g~p~~lv~~~~~~~~~~~~~~~~~~ 380 (395)
+++++|..++..++.+.+.+..++.+.+
T Consensus 166 ~~~~~p~~i~~~~~~~~~~~~~~~~~~~ 193 (413)
T cd01116 166 LLHMLPSVVLALVVTFILLYFLYRNILK 193 (413)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998888777776665443
No 41
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=99.59 E-value=9.4e-14 Score=137.22 Aligned_cols=181 Identities=18% Similarity=0.179 Sum_probs=148.4
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc--ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhh
Q 040250 197 ALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS--RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAH 274 (395)
Q Consensus 197 ~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~--~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~ 274 (395)
.-.++|.++.+..|+.+++..+ ..+++|+.+ +..|+..+++.|+++++..++++|+.||+|.+..+.
T Consensus 16 rP~~l~~~~~A~~GA~l~l~~G-----------~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A~~~a~~ 84 (423)
T PF02040_consen 16 RPRGLPEAVWAVLGAALALALG-----------VVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLALHAARW 84 (423)
T ss_pred cCCCCChHHHHHHHHHHHHHhC-----------CcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHHHHHHHh
Confidence 3457888888888887665554 256777654 577999999999999999999999999999999997
Q ss_pred cCchh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc----cCCCCC--hhHHHHHHHHHhhccccccccchhhHHHhc
Q 040250 275 IPNID-----LIASAIGVVSAVIDNVPLVAATIGMYDL----TSLPQD--SEFWQLIAYCASTGGSMLIIGSAAGVAFMG 343 (395)
Q Consensus 275 ~~~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~----~~~~~~--~~~~~~l~~~~~~gg~~tpigs~an~i~~~ 343 (395)
.++.. .++.+.++.|.|.||.+++.++.|++.. .+.++. -|+.++..+.+|.++...|+++++|++..+
T Consensus 85 a~g~~~rLf~~v~ll~~~vTaflsND~talilTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~LpvSNltNLv~~~ 164 (423)
T PF02040_consen 85 ARGSGRRLFLLVYLLGAVVTAFLSNDATALILTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPVSNLTNLVAAD 164 (423)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccccCcHHHHHHH
Confidence 65432 4567889999999999999999999752 333321 255677778889999999999999999999
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 040250 344 MEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQA 388 (395)
Q Consensus 344 ~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
..+++|.||.++.++..+++.++.+.+++.++|++-.++.+.+|.
T Consensus 165 ~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr~~l~~~~~~~~~ 209 (423)
T PF02040_consen 165 AFGISFLEYAAVMALPSLAAIAVTYLVLWLYFRRDLPKRYDLSEL 209 (423)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhcc
Confidence 999999999999999999999999998999998877777776654
No 42
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=99.54 E-value=4.1e-13 Score=132.82 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=125.8
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-
Q 040250 201 LPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID- 279 (395)
Q Consensus 201 i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~- 279 (395)
+|....++.+..++.+.+ ..++||+.++++|+++++++|++.+++++++||..|++++++.+..++.+
T Consensus 16 ~~~~~~al~~~~~l~~~g-----------~~~~~~~~~~~~~~~i~li~g~~~l~~~~~~tG~~~~la~~i~~~~~~~~~ 84 (382)
T cd01115 16 LPLDVTALLVPVLLVLLG-----------VVPPKEAFSGFSDPAVILFLAGFILGAALTRTGLAKRIATKLLKRAGKGER 84 (382)
T ss_pred ccHHHHHHHHHHHHHHhC-----------CCCHHHHHHHcCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCHH
Confidence 677777777666555543 35789999999999999999999999999999999999999997765432
Q ss_pred ----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhcc------cc
Q 040250 280 ----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGM------EK 346 (395)
Q Consensus 280 ----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~------~~ 346 (395)
.+...+.++|.+++|++.+.++.|+... .+.+.++ .......++++.|+..||+|+++|.+..+. ++
T Consensus 85 ~~~~~~~~~~~~ls~~~s~~~~~~i~~Pi~~~~~~~~g~~~~~~~l~~~~~~~~g~~~~p~g~~~n~i~~~~~~~~~~~~ 164 (382)
T cd01115 85 RLLLLLMLVTAFLSAFMSNTATVAIMLPVALGLAAKLDISPSRLLMPLAFAASIGGMLTLIGTPPNLVASGYLESLGGQG 164 (382)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcccceecCCchHHHHHHHHHHccCCC
Confidence 3567788999999999999999999753 3344443 456678889999999999999999998863 46
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 040250 347 VDFFWYFRKVSGFAFAGYAA 366 (395)
Q Consensus 347 ~~~~~~~k~g~p~~lv~~~~ 366 (395)
++++||.+.+.|..+++.+.
T Consensus 165 ~~~~~~~~~~~~~~i~~~~~ 184 (382)
T cd01115 165 FSFFEFTPIGLPLLIIGLLY 184 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 79999999999987766543
No 43
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.5e-13 Score=125.37 Aligned_cols=351 Identities=15% Similarity=0.145 Sum_probs=203.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh-c-CCchhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT-T-RKPRSLLWVVGFVTFFLSSILDNLTTTIVM 80 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~-~-~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~ 80 (395)
|++++-+++.++ .+++++++.|..=...|++ +.-.+-.|+. + ++...+.+.+++.++++|+|++..++++..
T Consensus 82 ~p~~v~~Ei~aN----~eVlLLL~FMVAGIyFMKq--LLLfiFtklLl~iRSK~~LSlaFc~~aAfLSAFLDALTVvAVv 155 (516)
T COG3067 82 SPEHVKEEVAAN----LEVLLLLMFMVAGIYFMKQ--LLLFIFTRLLLSIRSKMLLSLAFCVAAAFLSAFLDALTVVAVV 155 (516)
T ss_pred CHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 455555555544 4555555555443344443 3333333332 3 455566778999999999999999888765
Q ss_pred HH-------HHHHh--C----------CC-----------Chhh---HHHHHHHHHHhhhccccccccccchhhhhccCC
Q 040250 81 VS-------LVRKL--V----------PP-----------SEYR---KLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQ 127 (395)
Q Consensus 81 ~P-------i~~~l--~----------~~-----------~~~~---~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~ 127 (395)
+. ++++. + ++ +++| |-+++-..+++.+||.+|++|.|+|++++.+.|
T Consensus 156 ISVavgFy~iYH~VaSg~~~~~~~D~~~D~~i~e~~~~~LE~fRaFLRSLmMHagVGTALGGVmTmVGEPQNLiIa~~Ag 235 (516)
T COG3067 156 ISVAVGFYGIYHRVASGRTESDDTDITDDSHIDEHYKVVLEQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQAG 235 (516)
T ss_pred eeehhhhhhhhhhhccCCCcccccCccccccCChHHHHHHHHHHHHHHHHHHhhccchhhcceeeeccCchhhhhhhhcc
Confidence 43 33333 0 00 0111 345678999999999999999999999999999
Q ss_pred CChHHHHHHhHH---HHHHHHHHHHHHHHhhhh------ccccccC-Ccccc--cccccCCchhHHHH-HHHhHHHHHHH
Q 040250 128 ISTLPTMKSLFI---PSAVSLAVPLALLSLTSE------VNRKGQE-SSNVL--ASEQMAPRGQLVST-VGTGALIFVPV 194 (395)
Q Consensus 128 isf~~~~~~~~p---~~~v~~~~~~~~~~~~~~------~~~~~~~-~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~ 194 (395)
..|.||+..+.| |.+++-.+++.+.-.+|. .+++..+ ..+.+ +++.+++++|.... ..+..+|+.
T Consensus 236 W~F~eFflrm~PVt~PV~i~GlltC~LvEKfr~FGYGa~LP~~Vr~vL~~~d~~~~~krt~Qdk~kL~vQa~i~vwLv-- 313 (516)
T COG3067 236 WHFGEFFLRMAPVTVPVLICGLLTCLLVEKFRWFGYGATLPEKVRQVLQQFDDQSRHKRTRQDKIKLIVQAIIGVWLV-- 313 (516)
T ss_pred ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHH--
Confidence 999999999988 555666666555522211 1111111 11111 12223333333321 112222221
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHh-cccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Q 040250 195 FKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQAL-SRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDA 273 (395)
Q Consensus 195 ~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~-~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~ 273 (395)
..-.+|+. -+.++|..++.+...+ .-..| ..+..+++ ++.|...++-+ .|.++..+-+..+.+.+.+....
T Consensus 314 vgLAlHlA--~VGliGLsvIilaTsf-tGvt~---EH~iGkAFqEsLPFTALL~V--FFsvVAVIidQ~LF~PiIqfVL~ 385 (516)
T COG3067 314 VGLALHLA--EVGLIGLSVIILATSF-TGVTD---EHAIGKAFQESLPFTALLTV--FFSVVAVIIDQHLFSPIIQFVLQ 385 (516)
T ss_pred HHHHHHHH--HHhhhhhHHHHHHHhh-cCCcc---hhhhHHHHHhcCcHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHc
Confidence 11122222 2345666665554421 10111 11223343 46787776543 46678888888898888888877
Q ss_pred hcCc--hhHHHHHHHHHHHHhcCHHHHHHHhhhhcc-cCCC-CChhHHHHHHHHHhhcccc----ccccchhhHHHh-c-
Q 040250 274 HIPN--IDLIASAIGVVSAVIDNVPLVAATIGMYDL-TSLP-QDSEFWQLIAYCASTGGSM----LIIGSAAGVAFM-G- 343 (395)
Q Consensus 274 ~~~~--~~~~~~~~~~lS~~i~N~p~~~~~~pi~~~-~~~~-~~~~~~~~l~~~~~~gg~~----tpigs~an~i~~-~- 343 (395)
.... ...+++.-+++|.+.||+-+....+.-... ..-| ......-.++.+.|.|.|+ ||-|..+-.... +
T Consensus 386 a~~~~Ql~lfyifNGLLS~iSDNVFV~TvYInE~k~Al~~G~is~~qfelLaVAINTGTNLPSVATPNGQAAFLFLLTSa 465 (516)
T COG3067 386 ASEHAQLSLFYIFNGLLSSISDNVFVGTIYINEAKAALEAGAISLKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSA 465 (516)
T ss_pred CCcccchhHHHHHhhHHHhhccceEEEEEEehhHHHHHHcCCcCHHhhhHhhehhhcCCCCCcccCCCchhhHHHHHHhh
Confidence 5433 236788999999999998654332222221 1111 2234455677888888776 444444332221 1
Q ss_pred ---cccccHHHHHHHHHHHHHHHHHHHHH
Q 040250 344 ---MEKVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 344 ---~~~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
..+.+++++....+|++++...+++.
T Consensus 466 laPLiRLSYGRMV~MAlPYTlvl~~iGll 494 (516)
T COG3067 466 LAPLIRLSYGRMVWMALPYTLVLTLVGLL 494 (516)
T ss_pred hhHHHhhhhcceeeeeccHHHHHHHHHHH
Confidence 14789999999999999987776653
No 44
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=99.47 E-value=4.8e-11 Score=118.10 Aligned_cols=134 Identities=11% Similarity=0.153 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHhC---CCC
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTDNI---TTRKPRSLLWVVGFVTFFLSSILDNLT-TTIVMVSLVRKLV---PPS 91 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~~i---~~~~~~~l~~~~~l~~~~lS~~~~n~~-~~~i~~Pi~~~l~---~~~ 91 (395)
+|++++++.++..+++++++|..|++.+++ .++++++..+ +....+.++++++|++ +++.+.|+..++. +-+
T Consensus 48 ~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~i~l-lap~vt~l~afl~~Tg~~v~~~lPVi~~vA~k~gi~ 126 (443)
T PRK12489 48 VDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKYITI-LAPFVTYTLTFLCGTGHVVYSILPIIYDVALKNGIR 126 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhHHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 479999999999999999999999999955 4788998888 5555555669999997 6889999986651 222
Q ss_pred hhhHHHHHHHHHHhhhccccccccccchhhh---hcc----CCCChHHHHHHhHHHHHHHHHHHHHHHHhh
Q 040250 92 EYRKLLGAVVVIAANAGGVWSPIGDVTTTML---WIH----GQISTLPTMKSLFIPSAVSLAVPLALLSLT 155 (395)
Q Consensus 92 ~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~---~~~----~~isf~~~~~~~~p~~~v~~~~~~~~~~~~ 155 (395)
|.| . +....+++.+|...||++...|.++ ... .+++++|+.....|..++..+...++.+++
T Consensus 127 Psr-p-La~as~As~lGi~aSpin~~v~~l~~~l~~~~~~~~g~~~f~il~VgIP~~~ig~l~~~l~~~~~ 195 (443)
T PRK12489 127 PER-P-MAAASVASQMGITASPVSAAVVSLVAMLGNVTGEGRHITLLDILAVTIPATLIGVLAAALWSLRR 195 (443)
T ss_pred hhh-h-HHHHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 2 5678999999999999988877763 221 468889998777766666655555544444
No 45
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=99.45 E-value=2.5e-12 Score=125.35 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=117.5
Q ss_pred cCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHH-HHHHhhcCchh----HHHHHHHHHHHHhcCHHHHHHHhhh
Q 040250 230 KLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIG-NYLDAHIPNID----LIASAIGVVSAVIDNVPLVAATIGM 304 (395)
Q Consensus 230 ~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la-~~l~~~~~~~~----~~~~~~~~lS~~i~N~p~~~~~~pi 304 (395)
..+++++.+++.-+..+++.|+|+++++..++|+.++++ +.+.+. ++.. .+++.++++|+|+||+++++.++|+
T Consensus 80 ~~s~~~v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tklll~i-~Sk~~L~l~f~laaafLSaFLsnttvtAvmIpV 158 (515)
T TIGR00774 80 MTSAAHVKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLLGI-RSKTLLSLAFCFAAAFLSAFLDALTVVAVVISV 158 (515)
T ss_pred CCCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 468899999999999999999999999999999999999 666665 5432 4788999999999999999999998
Q ss_pred hccc----------------CCCCCh------------------hHHHHHHHHHhhccccccccchhhHHHhccccccHH
Q 040250 305 YDLT----------------SLPQDS------------------EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFF 350 (395)
Q Consensus 305 ~~~~----------------~~~~~~------------------~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~ 350 (395)
.... ..+.+. .+.+..++++|+||.+||+|+|+|+++.+..+.+|.
T Consensus 159 avgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~g~~F~ 238 (515)
T TIGR00774 159 AVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQAGWLFG 238 (515)
T ss_pred HHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHhCCCHH
Confidence 7421 111112 256788999999999999999999999887777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 351 WYFRKVSGFAFAGYAAGIAAYLAVN 375 (395)
Q Consensus 351 ~~~k~g~p~~lv~~~~~~~~~~~~~ 375 (395)
||+..-.|+++..+++.+.+..++.
T Consensus 239 ~FF~~m~Pv~LP~lIilll~~~l~~ 263 (515)
T TIGR00774 239 EFFLRMSPVTLPVFICGLLTCALVE 263 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888878888777776665555544
No 46
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=99.43 E-value=1.6e-11 Score=122.57 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=112.9
Q ss_pred cCCHHHHhcc--cCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHhcCHHHHHHHhh
Q 040250 230 KLKVPQALSR--INMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVIDNVPLVAATIG 303 (395)
Q Consensus 230 ~~~~~~~~~~--v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i~N~p~~~~~~p 303 (395)
..+++|+.++ .||+++++..++ +++++.++|..++++..+.+..++.. .+++.++++|+|+||++++++++|
T Consensus 80 v~s~~~a~~~f~~n~~vIlLL~fM--Vv~i~~~~gll~~v~~kil~~~~s~~~Lll~~~l~aA~LSAFLdN~Tvvav~iP 157 (513)
T PRK09547 80 MTSPEHVYHEIAANLEVLLLLMFM--VAGIYFMKQLLLFIFTKLLLSIRSKMLLSLAFCLAAAFLSAFLDALTVIAVVIS 157 (513)
T ss_pred CCCHHHHHHHhccCHHHHHHHHHH--HHHHHHHccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHhHHH
Confidence 3688999988 799999998766 79999999999999999999876643 467889999999999999999999
Q ss_pred hhcc---------------------cCCCCC----------hh----HHHHHHHHHhhccccccccchhhHHHhcccccc
Q 040250 304 MYDL---------------------TSLPQD----------SE----FWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVD 348 (395)
Q Consensus 304 i~~~---------------------~~~~~~----------~~----~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~ 348 (395)
+... ...+.+ .+ +.+.+++++++||.+|++|+|+|++..+..+.+
T Consensus 158 V~l~~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~p~pfL~~Llmpla~asnlGGv~TLIG~PqNLiIas~~g~~ 237 (513)
T PRK09547 158 VAVGFYGIYHRVASGKGFSEDHDLTDDSHIDELYREDLEQFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQAGWH 237 (513)
T ss_pred HHHHHhhhhHHHHhccccccccccccccccchhhhhhhcccchHHHHHHHHHHHHHHhhhheeccCCcHHHHHHHhcCcc
Confidence 9761 011111 12 334455699999999999999999998876889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040250 349 FFWYFRKVSGFAFAGYAAGIAAY 371 (395)
Q Consensus 349 ~~~~~k~g~p~~lv~~~~~~~~~ 371 (395)
|.||+....|.++..+++++.+.
T Consensus 238 F~~F~~~~apv~lpvli~gll~~ 260 (513)
T PRK09547 238 FGEFFLRMAPVTVPVLICGLLTC 260 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777777655
No 47
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=99.42 E-value=5.8e-10 Score=112.74 Aligned_cols=354 Identities=12% Similarity=0.082 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc---CCchhHHHHH-HHHHHHHH-HhhhhHH--HHHHHH
Q 040250 9 SELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT---RKPRSLLWVV-GFVTFFLS-SILDNLT--TTIVMV 81 (395)
Q Consensus 9 ~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~---~~~~~l~~~~-~l~~~~lS-~~~~n~~--~~~i~~ 81 (395)
....+.+++..+++.+++...=+++.++++|..|...+++.| ++.+.++... .+.+...+ ..+++-+ -..++.
T Consensus 68 ~~~~~g~~~~a~ii~~I~~igG~~~vm~~tGA~~~~v~~l~k~l~~~~~~~I~i~~~~f~~~~~~~g~~~~~i~~~~il~ 147 (465)
T PF03606_consen 68 VAIPKGFSQAAGIIFFIMIIGGFFGVMNHTGAIDALVNLLIKPLKGKKNPLIPILMFFFSGGGLTIGIPEEAIAFMPILI 147 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344567778888888888888999999999999999888763 3433333333 23333333 3334433 333667
Q ss_pred HHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhh-ccCCCChHHHHHHhHHHHHHHHHHHHHHH-Hhh---h
Q 040250 82 SLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLW-IHGQISTLPTMKSLFIPSAVSLAVPLALL-SLT---S 156 (395)
Q Consensus 82 Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~-~~~~isf~~~~~~~~p~~~v~~~~~~~~~-~~~---~ 156 (395)
|++.+++-++.. ..++.+.+...|...|..||-|..++ +..+++..+++.+...+..+..++..... +|. |
T Consensus 148 pi~~alG~d~~~----a~a~v~~~~~~g~~~~~~npf~~~iAq~iaglp~~sg~~~r~i~~~i~~~i~~~~~~~ya~kv~ 223 (465)
T PF03606_consen 148 PILIALGYDPIT----AAAAVILGAGAGFAGPPSNPFTVGIAQKIAGLPLFSGFWFRQIPFVIFTLIAIAYVHRYAQKVK 223 (465)
T ss_pred HHHHHcCCCHHH----HHHHHHHHHHHhhcCCccChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888655332 34455555556678888898776654 45689988877666665555444443333 332 2
Q ss_pred hccccc---cCC---cc-ccc-ccccCCchhHHHHHHHhHHHHHHH-h-hhhc--CCChHHHHHHHHHHHHHHHHhhhcc
Q 040250 157 EVNRKG---QES---SN-VLA-SEQMAPRGQLVSTVGTGALIFVPV-F-KALT--GLPPYMGILLGLGVLWILTDAIHYG 224 (395)
Q Consensus 157 ~~~~~~---~~~---~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~i~~~~~a~~~~~~l~l~~~~~~~~ 224 (395)
+++.+. ++. ++ .++ +++++++++....+.+..+.+... . .... ++.....+.+......+.. .+++
T Consensus 224 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~li~g~~~~~~~~~~~~~~~~~~fl~~~ii~~-~i~~- 301 (465)
T PF03606_consen 224 KDPSYSEVYEDDEAEEEEEEEQEEKLTKRPKLYLLLPVLPFVLLIYGFSFVIIKIKWYFPEIAALFLIIGIIIG-LIRH- 301 (465)
T ss_pred hcccchhhhhhHHhhhhcccccccccccccceeehHHHHHHHHHHhchhhhhccccccHHHHHHHHHHHHHHHH-HHHh-
Confidence 222111 100 00 011 112334455544333322221111 1 1111 2333222221111111222 1111
Q ss_pred chhhccCCHHHH----hcccCch-HHHHHHHHHHHHHHH-HHhCHHHHHHHHHHhhcCch--h----HHHHHHHHHHHHh
Q 040250 225 ESERQKLKVPQA----LSRINMQ-VPLFFLGILLSVSSL-EAAGLMRKIGNYLDAHIPNI--D----LIASAIGVVSAVI 292 (395)
Q Consensus 225 ~~~~~~~~~~~~----~~~v~w~-~l~~~~g~~~l~~~l-~~tG~~~~la~~l~~~~~~~--~----~~~~~~~~lS~~i 292 (395)
|++.+.+|. .|+..-- ...++.|+..-++.+ ++....+.+-+.+....++. . .+.++..+++-++
T Consensus 302 ---~~~~~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~~i~~tI~~~~~~~l~~~~~~~~~~~m~~~~~~~~fli 378 (465)
T PF03606_consen 302 ---RSGKSPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGGKIIDTIVHLLSNLLSGLPGVIAAIGMFLIQFLINFLI 378 (465)
T ss_pred ---hccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHeeec
Confidence 112233333 3322110 022223333222222 34444555555555443221 1 1223333333333
Q ss_pred -cCHHHHHHHhhhhcc--cCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHH
Q 040250 293 -DNVPLVAATIGMYDL--TSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGI 368 (395)
Q Consensus 293 -~N~p~~~~~~pi~~~--~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~ 368 (395)
|...-.....|+... ...|.+. ....+..++.+++-.++|.+ ..-+...+..++++.||+|+.+|..++..+++.
T Consensus 379 ~SGsg~a~~~mpim~plad~~Gi~~q~~vla~q~g~gl~n~isPts-g~~m~~l~ia~V~~~~w~K~~~~~~~~~~v~~~ 457 (465)
T PF03606_consen 379 GSGSGQAAAFMPIMPPLADLLGITRQTAVLAFQFGDGLGNSISPTS-GVLMAVLGIAKVSYGKWVKRTWPPMLIWFVLSI 457 (465)
T ss_pred CCchHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhccchH-HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777642 3444442 34466677888887778873 344444567899999999999999999998887
Q ss_pred HHHH
Q 040250 369 AAYL 372 (395)
Q Consensus 369 ~~~~ 372 (395)
+..+
T Consensus 458 v~l~ 461 (465)
T PF03606_consen 458 VFLI 461 (465)
T ss_pred HHHH
Confidence 6543
No 48
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=99.41 E-value=2.7e-13 Score=132.25 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=121.7
Q ss_pred cCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHHHHhcCHHHHHHHhhh
Q 040250 230 KLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVSAVIDNVPLVAATIGM 304 (395)
Q Consensus 230 ~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi 304 (395)
+.+.+++.+-+||+++.++.|+|+++..+++||++|++|-...+...+.. .++.+++++|++.||+.++.++.|+
T Consensus 220 rptle~iv~wID~etL~LLfGmMilv~ilseTg~FdYlav~ayriSrG~~w~li~~Lclvtav~Sa~ldN~TtvLLltpv 299 (685)
T KOG2639|consen 220 RPTLETIVSWIDFETLGLLFGMMILVAILSETGVFDYLAVLAYRISRGHVWPLICLLCLVTAVLSAFLDNVTTVLLLTPV 299 (685)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhcCCeEEEEecHH
Confidence 46889999999999999999999999999999999999999988776652 4788999999999999999888898
Q ss_pred hcc----cCCCCChhHHHHHHHHHhhccccccccchhhHHHhcc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 305 YDL----TSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGM-----EKVDFFWYFRKVSGFAFAGYAAGIAAYLAVN 375 (395)
Q Consensus 305 ~~~----~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~-----~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~ 375 (395)
... .++++ ++..+++++-+|+||.+||+|.|+|.+.... -+++|.+|-...+|.++..++.+..++-+++
T Consensus 300 ~IRLcevm~L~p-~pvLi~~vi~aNIGga~TPIGdPpNvIIatns~i~~~gv~f~~Ftahm~pgvlla~l~~~~~lrlly 378 (685)
T KOG2639|consen 300 VIRLCEVMNLDP-HPVLIAVVIYANIGGAATPIGDPPNVIIATNSEIPKAGVDFAVFTAHMLPGVLLAMLQTFMYLRLLY 378 (685)
T ss_pred HHHHHHHhcCCC-CceEEEEEEecccccccCcCCCCCcEEEEecceecccCcchhhhhHHHHHHHHHHHHHHhhhHhhhe
Confidence 752 34443 3455677888999999999999999988654 3699999999999999888877765554444
No 49
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=99.36 E-value=1.6e-09 Score=108.16 Aligned_cols=322 Identities=12% Similarity=0.090 Sum_probs=181.7
Q ss_pred HHHHHHHHhcCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHHhhh-hHHHHH----HHHHHHHHhCCCChhhHHHHHH
Q 040250 29 MTIVEIVDAHQGFKLVTDNI---TTRKPRSLLWVVGFVTFFLSSILD-NLTTTI----VMVSLVRKLVPPSEYRKLLGAV 100 (395)
Q Consensus 29 ~~i~~~l~~sG~~~~la~~i---~~~~~~~l~~~~~l~~~~lS~~~~-n~~~~~----i~~Pi~~~l~~~~~~~~~l~~~ 100 (395)
+++.+.++++|..|++.+.. .|+.+-.+-....+.++++++... +.+.++ +..|-.+|.+-++++ ..+
T Consensus 62 il~G~ll~~~gi~~~l~~~~~~~~g~~~Ggla~~~v~as~~fgaisGS~~A~~a~~G~i~iP~M~k~GY~~~~----A~a 137 (416)
T PF06808_consen 62 ILMGELLERSGIADRLIDFANALVGRVRGGLAQVAVVASALFGAISGSSVANAAAIGSITIPEMKKAGYPPEF----AAA 137 (416)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCCCCccchhHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHcCCCHHH----hHH
Confidence 34568999999999998755 455555556666667777777764 333333 445666665433333 233
Q ss_pred HHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCcccccccccC-Cch
Q 040250 101 VVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSNVLASEQMA-PRG 178 (395)
Q Consensus 101 i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~ 178 (395)
+.-++...|...|-+.+.-++.....+.|..+.+.....|.++.........+++ |+++.+.++.+ +.++.. ..+
T Consensus 138 v~aasgtlG~liPPsi~~ii~~~a~~~~si~~lf~agiiPgll~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 214 (416)
T PF06808_consen 138 VIAASGTLGQLIPPSIGMIIYGMAVTGVSIGDLFIAGIIPGLLLALGLMIYVYFIARKPGLPPEPRA---SLKERWRAFK 214 (416)
T ss_pred HHhhccccchhcchHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhHhheeeccccCccccc---hHHHHHHHHH
Confidence 3334444445544433333222226788999988888888887666555555554 32211111000 111110 001
Q ss_pred hHHHHHHHhHHHHHHHhhhhcCC-ChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcc------cCchHHHHHHHH
Q 040250 179 QLVSTVGTGALIFVPVFKALTGL-PPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSR------INMQVPLFFLGI 251 (395)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~------v~w~~l~~~~g~ 251 (395)
+.+..+.+..+++..+. .|+ .+.-.+..++...++..... +++.++||..+. ..-...+.+++.
T Consensus 215 ~~~~~l~~p~iil~~i~---~g~~t~teaa~~~~~~~l~i~~~~------~~~~~~~~l~~~l~~~~~~~~~i~~iia~a 285 (416)
T PF06808_consen 215 RAIPALLIPVIILGGIY---LGIFTPTEAAAVAVVYALVIGLFV------YRRLSWKDLWRALVETARTTGMILFIIAAA 285 (416)
T ss_pred hcchHHHHHHHHHHHhh---hcccchhhhhhhhHHHHHHHHHhh------hcccChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222222221 122 22222223332222322211 123444443321 233457777888
Q ss_pred HHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCChhHH--HHHHHH
Q 040250 252 LLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDSEFW--QLIAYC 323 (395)
Q Consensus 252 ~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~~~~--~~l~~~ 323 (395)
-++++.+..+|+.+.+++++.+..++.. .+.++..++-.++|.++...+..|+... .+.|.|+ .| ..+.+.
T Consensus 286 ~~~~~~l~~~g~~~~i~~~i~~l~~~~~~~l~l~~l~~lilG~~m~~~a~~ii~~pi~~P~~~~~Gidp-i~~g~~~~~~ 364 (416)
T PF06808_consen 286 GIFSWVLTLTGVPQAIAEFILSLSGSPWLVLLLIMLILLILGMFMDTTAAIIIVAPILAPIAQALGIDP-IHFGVFMFYN 364 (416)
T ss_pred HHHHHHHHHcCccHHHHHHHHhcCcchHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHH
Confidence 8889999999999999999998776553 2345566777899999998888888742 4556553 33 334444
Q ss_pred HhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHH
Q 040250 324 ASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGI 368 (395)
Q Consensus 324 ~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~ 368 (395)
..+| ..||.-..+-....+..+.+..|..|..+|+..+....-.
T Consensus 365 ~~ig-~iTPPvgl~lfva~~ia~~~~~~i~~~~~Pf~~~~~~~l~ 408 (416)
T PF06808_consen 365 AEIG-LITPPVGLNLFVAAGIAGVPMEKIFRGILPFIFVLLVALL 408 (416)
T ss_pred HHhc-CCCCCccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555 5566545555666677889999999999999987654433
No 50
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=99.34 E-value=1.1e-08 Score=101.53 Aligned_cols=318 Identities=16% Similarity=0.096 Sum_probs=182.2
Q ss_pred HHHHHHHHhcCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHHhhhhH-HHHH----HHHHHHHHhCCCChhhHHHHHH
Q 040250 29 MTIVEIVDAHQGFKLVTDNI---TTRKPRSLLWVVGFVTFFLSSILDNL-TTTI----VMVSLVRKLVPPSEYRKLLGAV 100 (395)
Q Consensus 29 ~~i~~~l~~sG~~~~la~~i---~~~~~~~l~~~~~l~~~~lS~~~~n~-~~~~----i~~Pi~~~l~~~~~~~~~l~~~ 100 (395)
.+..+.++|+|+.||+-+.. .|+-+-.+-....+.+++.++...+. +.++ ++.|-.+|-+=++++ ..+
T Consensus 63 il~G~lm~~~Gi~~rl~~~~~~lvG~~rGGLa~v~v~as~~fgaiSGSs~A~~aaiG~i~iP~M~k~GY~~~~----aag 138 (425)
T PRK15060 63 VLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAMIMASLSGSAVADTAAVAALLVPMMRSANYPVNR----AAG 138 (425)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHcCCCHHH----HHH
Confidence 34568999999999997654 46555566666667777777776433 3333 455666665433232 233
Q ss_pred HHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCcccccccccCCchh
Q 040250 101 VVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSNVLASEQMAPRGQ 179 (395)
Q Consensus 101 i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 179 (395)
+.-++...|...|-+.+.- +-+...+.|..+-+.....|.++.........+++ |+++ .++. ++.+.+++.+
T Consensus 139 ~~aasg~lG~lIPPSi~mI-iy~~~~~~Si~~LF~AGiiPGll~~~~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~ 211 (425)
T PRK15060 139 LIASGGIIAPIIPPSIPFI-IFGVSSGLSISKLFMAGIAPGIMMGATLMLTWWWQASRLN--LPRQ----PKATMREIWQ 211 (425)
T ss_pred HHHHhccCCccCCcHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHheeecCC--CCCC----CCCCHHHHHH
Confidence 4344444444444433321 22334688999998888888887766666655554 3211 1110 1111111111
Q ss_pred ----HHHHHHHhHHHHHHHhhhhcCC-ChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc------ccCchHHHHH
Q 040250 180 ----LVSTVGTGALIFVPVFKALTGL-PPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS------RINMQVPLFF 248 (395)
Q Consensus 180 ----~~~~~~~~~~~~~~~~~~~~~i-~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~------~v~w~~l~~~ 248 (395)
....+.+-.+++.... .|+ .|.-.+-+++...++.+.+.+ +++++|+..+ +..=...+.+
T Consensus 212 ~~~~a~~~l~~pviilggI~---~Gi~TpTEAaava~~yal~v~~~iy------r~l~~~~l~~~l~~t~~~t~~i~~ii 282 (425)
T PRK15060 212 SLVSGIWALFLPVIIIGGFR---SGLFTPTEAGAVAAFYALFVAVVIY------REMTFSTLYHVLINAAKTTSVVMFLV 282 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhccCHHHHHHHHHHHHHHHHHHHH------cCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111112111 232 232223333333333322211 2344444322 2233456677
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCChhHHHHHHH
Q 040250 249 LGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDSEFWQLIAY 322 (395)
Q Consensus 249 ~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~~~~~~l~~ 322 (395)
++..+.+..+..+|+.+.+++.+.+...++. .+..+..++-.|+|.++...+..|+... .++|.| |.|..+.+
T Consensus 283 ~~a~~f~~~lt~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~~a~ili~~Pil~Pi~~~~Gid-pv~fgii~ 361 (425)
T PRK15060 283 ASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDLTPTVLILTPVLMPLVKEAGID-PIYFGVMF 361 (425)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHH
Confidence 7888889999999999999999998765553 2445667778899999999999888742 566665 45555555
Q ss_pred HHh--hccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHH
Q 040250 323 CAS--TGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGI 368 (395)
Q Consensus 323 ~~~--~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~ 368 (395)
..| +| ..||.=...-....+..+.+..|..|-.+|+..+..++-.
T Consensus 362 ~~~~~ig-~iTPPvG~~lfv~~~ia~~~~~~i~~~~~Pf~~~~~~~l~ 408 (425)
T PRK15060 362 IINCSIG-LITPPVGNVLNVISGVAKLKFDDAVRGVFPYVLVLYSLLV 408 (425)
T ss_pred HHHHHHh-CCCCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555 44 4455433444555566789999999999999886665443
No 51
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=99.33 E-value=6.5e-09 Score=103.49 Aligned_cols=358 Identities=10% Similarity=0.025 Sum_probs=178.2
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.+++.+.+.+++.+- ..+-+.+....++...++|+|..|++|+.+.|+ ..|+..+.+.+.++++|-=+=.+++..++.
T Consensus 43 ~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~~~A~~i~g~iv~IPvF~dv~~viL~ 122 (441)
T PF02447_consen 43 PEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRAPLALAITGFIVGIPVFFDVGFVILA 122 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcccHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 577888888888644 557777777888999999999999999999753 445567777777888766555667888999
Q ss_pred HHHHHhCC--CChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHH-Hhhhhc
Q 040250 82 SLVRKLVP--PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALL-SLTSEV 158 (395)
Q Consensus 82 Pi~~~l~~--~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~-~~~~~~ 158 (395)
|+.+.+.+ ..+.. .+.++...+...+-...|- +|.-+-+.+..+.+....+.+-.+.++...++...++ ++.++.
T Consensus 123 Pl~~~la~~~~~s~~-~~~~~l~~gl~~~h~lvPP-tPgpla~a~~lg~dlG~~il~Gl~vaip~~~iag~~~~~~~~~~ 200 (441)
T PF02447_consen 123 PLAFSLARKTGKSLL-YLALPLAAGLSVTHALVPP-TPGPLAAAGALGADLGLVILYGLIVAIPAMLIAGPLYGRFISKR 200 (441)
T ss_pred HHHHHHHHHhCCCHH-HHHHHHHHHHHHhhhccCC-CCcHHHHHHHhCCChhHHHHHhHHHHHHHHHHHHHHHHHHhccC
Confidence 99987632 11221 1233344444444344443 3444444555677777777676666665554443333 333222
Q ss_pred -cccccCCcccccc---cccCCchhHHHH---HHHhHHHHH-HHhhh-------------hcCCChHHHHHHHHHHHHHH
Q 040250 159 -NRKGQESSNVLAS---EQMAPRGQLVST---VGTGALIFV-PVFKA-------------LTGLPPYMGILLGLGVLWIL 217 (395)
Q Consensus 159 -~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~-~~~~~-------------~~~i~~~~~a~~~~~~l~l~ 217 (395)
+...++.++..+. ++.+.+...... +.-..++.. ..... +.| +|...-+++..+ .++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~lPs~~~s~~~illPiiLI~~~t~~~~~~~~~~~~~~~~~flG-~p~iALlig~l~-a~~ 278 (441)
T PF02447_consen 201 IPIPPPEISESAEEEETDEKKLPSFGLSLLPILLPIILILLGTVADLFLPKGSPLRSILSFLG-DPNIALLIGVLI-ALY 278 (441)
T ss_pred CCCCCcchhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHhC-CcHHHHHHHHHH-HHH
Confidence 1111111000111 111111111111 111111111 11110 112 222222233222 121
Q ss_pred HHhhhccchhhcc-CCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHH-HHHHHHHHh---
Q 040250 218 TDAIHYGESERQK-LKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIAS-AIGVVSAVI--- 292 (395)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~-~~~~lS~~i--- 292 (395)
....+++.+.++. ...+|..+.. -..++..++.-.+++.+++||+.|.+++.+.+.--+..++.| +++++..-.
T Consensus 279 ~l~~~~~~~~~~~~~~~~~al~~~-g~IlLItgaGGafg~vl~~sgi~~~i~~~~~~~~ip~lll~fliaa~lr~aqGSa 357 (441)
T PF02447_consen 279 LLGRRRGMSREEVMKWLEKALKPA-GMILLITGAGGAFGQVLKDSGIGDAIANLLSGSGIPPLLLAFLIAALLRTAQGSA 357 (441)
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHH-HHHHhhhcchHHHHHHHHhCCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhH
Confidence 1101111111111 1123344433 233555666777899999999999999988764222223333 333333222
Q ss_pred --cCHHHHHHHhhhhcccCCCCChhHHHHHHHHHhhcccc-ccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Q 040250 293 --DNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSM-LIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 293 --~N~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~~~gg~~-tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
.-..++.++.|++...+ +. +|.+ ++++.+.|+.. ..+.++---+..++.+.+.+|-+|.-...+.+.-+++..
T Consensus 358 TVA~iTaa~I~aPl~~~~~-~v-~p~l--~~lAigaGs~~~shvNDsgFWlv~~~~g~s~k~tlkt~t~~~~i~~v~g~~ 433 (441)
T PF02447_consen 358 TVAMITAAGIVAPLLASLG-GV-SPVL--LVLAIGAGSMFFSHVNDSGFWLVKRFFGLSVKQTLKTWTVMTTIASVVGLI 433 (441)
T ss_pred HHHHHHHHHHhcccccccc-ch-hHHH--HHHHHhcCCceeecCCCCceEEEeccccCCHHHHHHhhHHHHHHHHHHHHH
Confidence 22223333345554221 22 2333 34445445432 333332222223446889999998655555555555544
Q ss_pred H
Q 040250 370 A 370 (395)
Q Consensus 370 ~ 370 (395)
.
T Consensus 434 ~ 434 (441)
T PF02447_consen 434 I 434 (441)
T ss_pred H
Confidence 3
No 52
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=99.33 E-value=2.7e-08 Score=100.23 Aligned_cols=359 Identities=10% Similarity=0.034 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
..+..+.+.+.+.+. ++..+.+.....+.+.|+|+|..|++++.+.|. ..+|..+.+++.+++++....-+....++.
T Consensus 43 ~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~~r~~~a~~~~~~ilgi~~f~~~~~vil~ 122 (440)
T TIGR00791 43 LDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGKSRVQWAVVIAGLIVGLALFFEVGFVLLI 122 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345667777777644 567888888889999999999999999998742 334556666666677655554444555777
Q ss_pred HHHHHh----CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHH-HHHHHHHHHhh-
Q 040250 82 SLVRKL----VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVS-LAVPLALLSLT- 155 (395)
Q Consensus 82 Pi~~~l----~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~-~~~~~~~~~~~- 155 (395)
|+++.+ +.++. .+.+..+.+....-...|..-+++ .+.+..+.+..+++.+..+.++.. ++..++..++.
T Consensus 123 Pi~~~l~~~~g~s~~---~~a~~~~~~~~~~~~~vPp~Pg~~-~~a~~~g~~~~~~~~~gl~~~i~~~i~~g~~~~~~~~ 198 (440)
T TIGR00791 123 PLVFSIAAEAKISLL---KLGIPMVAALSVAHGFLPPHPGPT-AIANEYGADIGEVLLYGLIVAIPTVIIAGPLFTKFLG 198 (440)
T ss_pred HHHHHHHHHhCCChH---HHHHHHHHHHHHhceeCCCCccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887665 22321 123344444444444455544444 455567788888887777766553 33334433333
Q ss_pred hhcccccc-CCccccc--ccccCC-chhHHHHHHHhHHHHHHHhhh--hcC-C----------ChHHHHHHHHHHHHHHH
Q 040250 156 SEVNRKGQ-ESSNVLA--SEQMAP-RGQLVSTVGTGALIFVPVFKA--LTG-L----------PPYMGILLGLGVLWILT 218 (395)
Q Consensus 156 ~~~~~~~~-~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~-i----------~~~~~a~~~~~~l~l~~ 218 (395)
|+++++.+ +.++.++ +++... +++....+.-..+++...+.. ..+ - ++....+++..+.....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~llPillii~~~~~~~~~~~~~~~~~~~~~~g~~~~Alli~~~~a~~~~ 278 (440)
T TIGR00791 199 RIVPPSPEASLGSQKTFSEEEMPSFGISLFTALLPVILMAVKTIAELTLPKGSTAYEVVEFIGNPSTAMFIALLVAIYTL 278 (440)
T ss_pred cccCCCCchhhhccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 22211111 0000010 111111 111122111111111110000 000 0 22222233332222111
Q ss_pred Hhhhccchhhcc-CCHHHHhcccCchHHHHHHH-HHHHHHHHHHhCHHHHHHHHHHhhcCchh-HHHHHHHHHHHHhcC-
Q 040250 219 DAIHYGESERQK-LKVPQALSRINMQVPLFFLG-ILLSVSSLEAAGLMRKIGNYLDAHIPNID-LIASAIGVVSAVIDN- 294 (395)
Q Consensus 219 ~~~~~~~~~~~~-~~~~~~~~~v~w~~l~~~~g-~~~l~~~l~~tG~~~~la~~l~~~~~~~~-~~~~~~~~lS~~i~N- 294 (395)
. .+++++.++. ...++..+. +..+.++.| ...+.+.++++|..|.+++.+.+.--+.. ...+++.+++-...+
T Consensus 279 ~-~~~~~~~~~~~~~~~~g~~~--~~~i~li~~~gg~f~~vl~~~G~~~~l~~~~~~~~~~~~~l~fli~~~i~~atGS~ 355 (440)
T TIGR00791 279 G-IRRGMPMDQVMDSCGSAIGS--IAMILLIIGGGGAFKQVLIDSGVGDYIAELMSGMNISPILMAWLIAAILRIALGSA 355 (440)
T ss_pred H-HhcCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcch
Confidence 1 1111111110 012233332 344455553 67789999999999999999987422232 233344444433332
Q ss_pred ----HHHHHHHhhhhcccCCCCChhHHHHHHHHHhhccccccc-cchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Q 040250 295 ----VPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLII-GSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 295 ----~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~~~gg~~tpi-gs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
.....++.|+... ..+.++.. . ..+...|+...+= .++.--+..++.+.+.+|-+|.-...+.+.-+++.+
T Consensus 356 tva~~~~~~I~~Pil~~-~~g~~~~~-~--~lai~aG~~~~sH~nd~~fwl~~~~~g~~~~~~~k~~~~~~~i~~~~~~~ 431 (440)
T TIGR00791 356 TVAALTAAGLVAPLLGQ-YSGVNPAL-L--VLATGAGSVIASHVNDAGFWLFKEYFGLTVKETLKTWTLLETIISVVGLI 431 (440)
T ss_pred HHHHHHHHHHHHHHhhc-cCCcCHHH-H--HHHHhcCCcccccCCCChhhhhhhhcCCCHhhhhhhhhHHHHHHHHHHHH
Confidence 2444566788642 22444332 2 3333334442221 111222223557888888888766666555555554
Q ss_pred HHHH
Q 040250 370 AYLA 373 (395)
Q Consensus 370 ~~~~ 373 (395)
..+.
T Consensus 432 ~~~~ 435 (440)
T TIGR00791 432 GVLL 435 (440)
T ss_pred HHHH
Confidence 4433
No 53
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=99.29 E-value=2.5e-08 Score=98.17 Aligned_cols=357 Identities=10% Similarity=0.076 Sum_probs=200.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc-----CCchhHHHHHHHHHHHHHHhhhhHHHHH--
Q 040250 7 AVSELSRASA-EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT-----RKPRSLLWVVGFVTFFLSSILDNLTTTI-- 78 (395)
Q Consensus 7 ~~~~~~~~~~-~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~-----~~~~~l~~~~~l~~~~lS~~~~n~~~~~-- 78 (395)
.-+.+.+.++ +..+....++..+=++.+|++.|-.|.+.+-..| |+|+.++...++++.++|-++++-+-..
T Consensus 61 ~f~~i~~~~~s~~~glGl~Im~~~GFa~YM~hIGA~~~lV~~~~kPL~~ik~pYlll~~~~llg~llsl~IpSAaGLa~l 140 (455)
T PRK09804 61 IYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGML 140 (455)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHhHHHHHHhhCccHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhccccHHhHHHH
Confidence 3344444333 3345777888888899999999999999887753 6888888899999999999998664333
Q ss_pred ---HHHHHHHHhCCCChhhHHHHHHHHHHhhhcc-ccccccccchhhhhccCCCChHHHH-HHhHHHHHHHHHHHHHHHH
Q 040250 79 ---VMVSLVRKLVPPSEYRKLLGAVVVIAANAGG-VWSPIGDVTTTMLWIHGQISTLPTM-KSLFIPSAVSLAVPLALLS 153 (395)
Q Consensus 79 ---i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg-~~tpiG~~~n~i~~~~~~isf~~~~-~~~~p~~~v~~~~~~~~~~ 153 (395)
.+.|+..+.+-++.. ..++.+..+. ...|. ++-|..+++..|.+-.||+ .+-.|.++...++....-+
T Consensus 141 Lmatl~PvLi~~Gvs~~~------AaaVia~t~~i~~gP~-s~~~v~aA~~~g~~v~~y~~~~q~p~~i~~i~~iai~h~ 213 (455)
T PRK09804 141 LMVTLFPTLVSLGVSRLS------AVAVIATTMSIEWGIL-ETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHF 213 (455)
T ss_pred HHHHHHHHHHHcCCCHHH------HHHHHHhhhcccCCCC-CchHHHHHHHcCCChhheeeeccHHHHHHHHHHHHHHHH
Confidence 346999988655321 2333332221 13344 4456677777788988888 5666655433322222222
Q ss_pred hh-h--hccccccCCcccccccccCCchhHHHHHHH---hHHHHHHHhhhh-----cCCChHHHHHHHHHHHHHHHHhhh
Q 040250 154 LT-S--EVNRKGQESSNVLASEQMAPRGQLVSTVGT---GALIFVPVFKAL-----TGLPPYMGILLGLGVLWILTDAIH 222 (395)
Q Consensus 154 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~i~~~~~a~~~~~~l~l~~~~~~ 222 (395)
++ | ++++..++.++ .+.++.+++.-....+.- ..+++..-+... ..++.....+++..+.+++- .++
T Consensus 214 fwqr~~Dkk~~~~~~~~-~~~~~~~~~~p~~YAlLP~lPliLil~~~f~~~~~~~~i~l~v~~am~is~~ia~l~e-~ir 291 (455)
T PRK09804 214 FVQRAFDKKDKNINHEQ-AEQKALDNVPPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVE-FFR 291 (455)
T ss_pred HHHHHHHhhcccccccc-cccccccccCchHHHHHHHHHHHHHHHHHhhcccccCceeecHHHHHHHHHHHHHHHH-HHH
Confidence 22 1 11111111111 111111111111111111 111111001111 33455555556665554544 233
Q ss_pred ccchhhcc-CCHHHHhcc---cCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHh-c
Q 040250 223 YGESERQK-LKVPQALSR---INMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVI-D 293 (395)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~---v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i-~ 293 (395)
+++.|+. .+.++.+|+ .=-+++-++.+.=+.+++++..|..|.+-+...+.-.+.. .+..++.+.+-.+ |
T Consensus 292 -~r~~k~~~~~~~~ff~GMG~~f~~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~~g~g~~~~~lv~~~i~~l~a~l~GS 370 (455)
T PRK09804 292 -KHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGS 370 (455)
T ss_pred -hccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhcC
Confidence 3222221 122333332 2223555666666679999999999999998887543322 1222333333333 3
Q ss_pred CHHHHHHHhhhhcc--cCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Q 040250 294 NVPLVAATIGMYDL--TSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAA 370 (395)
Q Consensus 294 N~p~~~~~~pi~~~--~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~ 370 (395)
..+.-..+.|.+.. .++|.++ ....++.+++++|=...|++ ..-+...+..+++..|-.|...+..++..++.++.
T Consensus 371 GnAaffAF~~lvp~iA~~~G~~~~~l~lpmq~as~lgRt~SPVa-gviIavAg~a~vSP~eiVKRTavPml~g~i~~~i~ 449 (455)
T PRK09804 371 GNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPIT-AVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIA 449 (455)
T ss_pred chHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHhhccccCchh-hHHhhhccccCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333445565542 4556554 45677888999998899994 44444556789999999999999988888777655
Q ss_pred HHHH
Q 040250 371 YLAV 374 (395)
Q Consensus 371 ~~~~ 374 (395)
.+.+
T Consensus 450 ~~~~ 453 (455)
T PRK09804 450 TITL 453 (455)
T ss_pred HHHH
Confidence 5444
No 54
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=99.29 E-value=5.5e-10 Score=103.55 Aligned_cols=245 Identities=16% Similarity=0.185 Sum_probs=139.0
Q ss_pred CchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChH
Q 040250 52 KPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTL 131 (395)
Q Consensus 52 ~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~ 131 (395)
+-|.+.+.+..+-++.|++++...+.+++..++..+.-+++.+.-+....+++-.+|.+.||+|.|...++-+..+-+|+
T Consensus 98 ~~k~~vfl~vviLGL~SSiITAIIAAliLvEIv~~lpl~R~~Kv~~~ViaCFsIGlGAaLTPiGEPLSTIaVSKL~a~F~ 177 (347)
T PF07854_consen 98 PLKVFVFLLVVILGLSSSIITAIIAALILVEIVNALPLDRKSKVKLVVIACFSIGLGAALTPIGEPLSTIAVSKLNADFF 177 (347)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEeehhHHHHhcCccccCCCCCcHHHHHHHHcccHH
Confidence 44455556667888899999999999999988877632222211123456777779999999999999888777777776
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCcccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHH
Q 040250 132 PTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLG 210 (395)
Q Consensus 132 ~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~ 210 (395)
..+...++..+...++.-++-.++ ++.+.+.+..+..+++++. |+-..++.=+...+.+. .++|
T Consensus 178 yL~~~lg~yIi~~vl~~gll~~~~~~~~~~~~~~~~~~~~~e~~--k~v~iRa~KVylFv~AL-------------~lLG 242 (347)
T PF07854_consen 178 YLFRLLGIYIIPGVLALGLLAAFFLKREKPREEGVEAIEYEESL--KEVFIRAAKVYLFVMAL-------------TLLG 242 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhhcccchhHH--HHHHHHHHHHHHHHHHH-------------HHHh
Confidence 555544444433333332333333 3322221111111111121 11111111111100000 0111
Q ss_pred HHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 040250 211 LGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSA 290 (395)
Q Consensus 211 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~ 290 (395)
.+.=.+. ++.+-++ + +..++|+ -..|+
T Consensus 243 ~gfkPli----------------~~y~~~l-----------------------------------~-~~~LYw~-NmiSA 269 (347)
T PF07854_consen 243 EGFKPLI----------------DKYIIKL-----------------------------------P-PEILYWV-NMISA 269 (347)
T ss_pred cccHHHH----------------HHHHhcC-----------------------------------C-ccceehh-hHHHH
Confidence 1111111 0111111 1 1112222 24688
Q ss_pred HhcCHHHHHHHh-hhhcccCCCCChhHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Q 040250 291 VIDNVPLVAATI-GMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 291 ~i~N~p~~~~~~-pi~~~~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
+.||.+.+++-+ |- .+..+..+..++--++|-++..|+-+|++..+..+++.+||.|.|+|..++.+++..+
T Consensus 270 vlDNATLaAAEIsP~-------m~~~qi~aiLmgLliSGGMlIPGNIPNIIsAgkL~I~skEWar~gvPlGl~~m~~yfi 342 (347)
T PF07854_consen 270 VLDNATLAAAEISPE-------MSEEQIRAILMGLLISGGMLIPGNIPNIISAGKLKITSKEWARLGVPLGLVLMVVYFI 342 (347)
T ss_pred HHhhHHHHHHHhCcc-------cCHHHHHHHHHHHHHcCCeecCCCcchhhccccCccchHHHHHHcccHHHHHHHHHHH
Confidence 899988776533 32 1234556677777777778888999999999999999999999999999988877665
Q ss_pred HH
Q 040250 370 AY 371 (395)
Q Consensus 370 ~~ 371 (395)
+.
T Consensus 343 ~~ 344 (347)
T PF07854_consen 343 IL 344 (347)
T ss_pred Hh
Confidence 43
No 55
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=99.25 E-value=8.8e-08 Score=95.08 Aligned_cols=359 Identities=12% Similarity=0.087 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSE-IVFFLLGAMTIVEIVDAHQGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.+++.+.+.+++.+... ....+....++...++++|..|++|+++.|+ ..||..+.+.+.+++++--+--++...++.
T Consensus 43 ~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~kr~~~a~~l~~~il~ipvF~dv~fvil~ 122 (438)
T PRK14984 43 LDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVGFVLML 122 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45666778888876654 5666666777888999999999999999742 556777788888887773333445566889
Q ss_pred HHHHHhCC--CChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHH-HHHHHHhhhhc
Q 040250 82 SLVRKLVP--PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAV-PLALLSLTSEV 158 (395)
Q Consensus 82 Pi~~~l~~--~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~-~~~~~~~~~~~ 158 (395)
|+.+.+.+ +.+. +.+..+...+........ -++|--+-+++..+.+....+.+-.++++...++ .+++.++.++.
T Consensus 123 Pi~~~lak~~~~~~-~~~~~~l~~gl~~th~~v-PP~Pgpla~a~~lgadlG~~il~Glivaip~~~i~g~~~~~~~~~~ 200 (438)
T PRK14984 123 PLVFTIAASANIPL-LYVGVPMAAALSVTHGFL-PPHPGPTAIATIFNADMGKTLLYGTILAIPTVILAGPVYARFLKGI 200 (438)
T ss_pred HHHHHHHHHhCcCh-HHHHHHHHHHHHHHHhCC-CCCCcHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHHHHHHHHhccC
Confidence 99977622 2122 122223333322222222 2345444555666777777776666666554333 33333333221
Q ss_pred cccc-cCC-ccc-ccccccCCchh-HHHHHHHhHHHHH-HHhhhh-------------cCCChHHHHHHHHHHHHHHHHh
Q 040250 159 NRKG-QES-SNV-LASEQMAPRGQ-LVSTVGTGALIFV-PVFKAL-------------TGLPPYMGILLGLGVLWILTDA 220 (395)
Q Consensus 159 ~~~~-~~~-~~~-~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~-------------~~i~~~~~a~~~~~~l~l~~~~ 220 (395)
..+. ++. ++. .++++...... ....++-..++.. ...... .| +|. +++....++.++..-
T Consensus 201 ~~~~~~~~~~~~~~~~~~~Ps~~~s~~~illPi~LI~~~t~~~~~~~~~~~~~~~l~f~G-~p~-iALlig~l~a~~~lg 278 (438)
T PRK14984 201 DKPIPEGLYSAKTFTEEEMPSFGVSVWTSLVPVILMAMRAIAEMILPKGHAFLPVAEFLG-DPV-MATLIAVLIAMFTFG 278 (438)
T ss_pred CCCCChhhcccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHhC-CHH-HHHHHHHHHHHHHHH
Confidence 1110 100 000 01111111111 1111111111111 111100 11 222 233222222221100
Q ss_pred hhccchhhcc-CCHHHHhcccCchHHHHHHH-HHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHH-HHHH-----HHHh
Q 040250 221 IHYGESERQK-LKVPQALSRINMQVPLFFLG-ILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASA-IGVV-----SAVI 292 (395)
Q Consensus 221 ~~~~~~~~~~-~~~~~~~~~v~w~~l~~~~g-~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~-~~~l-----S~~i 292 (395)
.+++++.++. ...+|..+.. ..++++.| .=.+.+.+++||+.|.+++.+.+.--+...+.|+ ++++ |.-+
T Consensus 279 ~~~~~~~~~~~~~~~~al~~~--g~IlLI~gaGGafg~VL~~sgi~~~i~~~l~~~~l~~lllafliaallr~aqGSaTV 356 (438)
T PRK14984 279 LNRGRSMDQINDTLVSSIKII--AMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNISPLLMAWSIAAVLRIALGSATV 356 (438)
T ss_pred hhcCCCHHHHHHHHHHHHHHH--HHHHHHHcChHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 1122211111 1123444443 44445444 4778999999999999999998642222333333 3333 3333
Q ss_pred cCHHHHHHHhhhhcccCCCCChhHHHHHHHHHhhcccc-ccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 293 DNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSM-LIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAY 371 (395)
Q Consensus 293 ~N~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~~~gg~~-tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~ 371 (395)
.-..++.++.|+.. ..+.+ + ..++++.+.|+.. .-+.++---+..++.+.+.+|=+|.=...+.+.-+++.+..
T Consensus 357 A~itaa~I~ap~l~--~~~~~-p--~~~~lAi~aGs~~~shvNDsgFWlv~~~~g~~~~~tlkt~T~~~ti~~v~gl~~~ 431 (438)
T PRK14984 357 AAITAGGIAAPLIA--TTGVS-P--ELMVIAVGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGC 431 (438)
T ss_pred HHHHHHHHHHHHhc--ccCcc-H--HHHHHHHhCCCceeeeCCCCcchhhhhhcCCCHhhhheeehHHHHHHHHHHHHHH
Confidence 33334444456643 12222 3 2345555556543 33333332333355678888888864455554545554444
Q ss_pred HH
Q 040250 372 LA 373 (395)
Q Consensus 372 ~~ 373 (395)
+.
T Consensus 432 ~i 433 (438)
T PRK14984 432 LL 433 (438)
T ss_pred HH
Confidence 33
No 56
>PRK09821 putative transporter; Provisional
Probab=99.21 E-value=6.6e-08 Score=96.48 Aligned_cols=149 Identities=8% Similarity=-0.060 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSE-IVFFLLGAMTIVEIVDAHQGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~-~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.+++.+.+.+++.+... ...+++...++...++++|..|++++++.|. ..++..+.+++.+++++--+--+++..++.
T Consensus 47 ~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k~~~~ai~i~~~ilgIpvF~dv~fvil~ 126 (454)
T PRK09821 47 AGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLGDKRTIAALTLAAFILGIPVFFDVGFIILA 126 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 36788889999987755 6666667778889999999999999999752 445666778888888864444456677888
Q ss_pred HHHHHhC-C-CChhhHHHHHHHHHHhhhcc-ccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh
Q 040250 82 SLVRKLV-P-PSEYRKLLGAVVVIAANAGG-VWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT 155 (395)
Q Consensus 82 Pi~~~l~-~-~~~~~~~l~~~i~~~an~gg-~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~ 155 (395)
|+.+.+. + +.+.++ +.++..-+.+... ...|..+|.|. .+..+.+......+....++...++.+++.++.
T Consensus 127 Pl~~~l~kk~~~~~~~-l~l~~~~~l~~~h~~vPP~Pgp~~~--a~~Lg~d~g~~~l~Giivaip~~i~g~~~~~~~ 200 (454)
T PRK09821 127 PIIYGFAKVAKVSPLK-FGLPVAGIMLTVHVALPPHPGPVAA--AGLLHADIGWLTIIGIAISIPVGIVGYFAAKII 200 (454)
T ss_pred HHHHHHHHHhCcCHHH-HHHHHHHHHHHcccccCCChHHHHH--HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8886651 1 222222 2233332223222 34667777775 345566655555555555554444444444443
No 57
>PRK10472 low affinity gluconate transporter; Provisional
Probab=99.21 E-value=1.2e-07 Score=94.51 Aligned_cols=363 Identities=9% Similarity=0.027 Sum_probs=181.3
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.++..+.+.+++.+.. .....+....++...+||+|-.|++++.+.+. ..+|..+.+.+.+++++-=+=-|+...++.
T Consensus 47 ~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG~kr~~~A~~l~g~iv~iPvF~dv~fvil~ 126 (445)
T PRK10472 47 LDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAHYAIGLAGLICALPLFFEVAIVLLI 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCcccHHHHHHHHHHHHhhHHHHhhHHHHhH
Confidence 3666777777777665 56667777778999999999999999999753 566778888888888777677888889999
Q ss_pred HHHHHhCCC--ChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHH-HHHHHHhhhh-
Q 040250 82 SLVRKLVPP--SEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAV-PLALLSLTSE- 157 (395)
Q Consensus 82 Pi~~~l~~~--~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~-~~~~~~~~~~- 157 (395)
|+++.+.++ .+.. .+.++...+-...-...|= +|--+-+++..+.+....+.+-...++...++ .+++.++..+
T Consensus 127 Pl~~~la~~~~~s~~-~~~~~l~~gl~~~H~~vPP-~Pgp~a~a~~l~adlG~~il~Glivaip~~~i~g~~~~~~~~~~ 204 (445)
T PRK10472 127 SVAFSMARHTGTNLV-KLVIPLFAGVAAAAAFLLP-GPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFISRY 204 (445)
T ss_pred HHHHHHHHHHCCChH-HHHHHHHHHHHhcccccCC-CcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999776221 1221 1233444443444444444 34333445566777666666666666555433 3333344322
Q ss_pred cccc-ccCCcccccccccCCchhHHHHHHHhHHHHHHHhhhhcC--CC--------------hHHHHHHHHHHHHHHHHh
Q 040250 158 VNRK-GQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTG--LP--------------PYMGILLGLGVLWILTDA 220 (395)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~--------------~~~~a~~~~~~l~l~~~~ 220 (395)
.+.+ .++.++.+++ +-+.+........++.-+++...+...+ .+ |. +++....++.++.-.
T Consensus 205 ~~~~~~~~~~~~~~~-~~~~Ps~~~s~~~illPi~LI~~~t~~~~~~~~~~~~~~~~~flG~p~-iALlig~l~a~~~lg 282 (445)
T PRK10472 205 VELHIPDDISEPHLG-EGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPF-TAILVACLVAIYGLA 282 (445)
T ss_pred CCCCCCchhhhhccc-ccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHhCChH-HHHHHHHHHHHHHHH
Confidence 1110 0100111111 1111111111111111111111111110 11 22 233222222221100
Q ss_pred hhccchhhccCC-HHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHH------HHHhc
Q 040250 221 IHYGESERQKLK-VPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVV------SAVID 293 (395)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~l------S~~i~ 293 (395)
.+++++.++..+ .+|+++.. -..++..++.=.+.+.+++||+.|.+++.+.+.--+...+.|+.+.+ |+-+.
T Consensus 283 ~~~~~~~~~~~~~~~~al~~~-g~ilLItGaGGafg~vL~~sgig~~l~~~~~~~~~p~lllaflia~~lr~a~GSaTVA 361 (445)
T PRK10472 283 MRQGMPKDKVMEICGHALQPA-GIILLVIGAGGVFKQVLVDSGVGPALGEALTGMGLPIAITCFVLAAAVRIIQGSATVA 361 (445)
T ss_pred hccCCcHHHHHHHHHHHHHhh-hHhheeecChHHHHHHHHHCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhHHHH
Confidence 122221111111 24555553 23344445555579999999999999999977532233344433322 22222
Q ss_pred CHHHHHHHhhhhcccCCCCChhHHHHHHHHHhhcccc-ccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 294 NVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSM-LIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYL 372 (395)
Q Consensus 294 N~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~~~gg~~-tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~ 372 (395)
-+.++.++.|+......+...+ ..+.++.+.|+.. .-..++---+..++.+.+.+|=+|.-.+...+.-+++.+..+
T Consensus 362 ~iTaa~i~apll~~~~~~~~~~--~l~~lAi~aGs~~~shvNDsgFW~v~~~~gl~~~~tlkt~t~~~ti~~~~~~~~~~ 439 (445)
T PRK10472 362 CLTAVGLVMPVIEQLNYSGAQM--AALSICIAGGSIVVSHVNDAGFWLFGKFTGATEAQTLKTWTMMETILGTVGAIVGM 439 (445)
T ss_pred HHHHHHHHHHHHHhcCCCchhH--HHHHHHHhCCCceeccCCCCcchhhhhhcCCCHHhhhheehHHHHHHHHHHHHHHH
Confidence 2333444557653111111112 2335555556543 333222223333556788888888655555555555544443
Q ss_pred H
Q 040250 373 A 373 (395)
Q Consensus 373 ~ 373 (395)
.
T Consensus 440 i 440 (445)
T PRK10472 440 I 440 (445)
T ss_pred H
Confidence 3
No 58
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.19 E-value=9.1e-10 Score=112.02 Aligned_cols=167 Identities=20% Similarity=0.170 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhccCC---HHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCc
Q 040250 201 LPPYMGILLGLGVLWILTDAIHYGESERQKLK---VPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPN 277 (395)
Q Consensus 201 i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~---~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~ 277 (395)
+|....+++...++.+.+. .+ .+++.++..-++++++.|+|.++.++++||+.++++.++.+..++
T Consensus 49 iP~~vtal~~~~l~~~~~~-----------~~~~~~~~~~s~f~s~~v~li~g~f~i~~al~ktgL~~Ria~~~l~~~g~ 117 (471)
T PF00939_consen 49 IPLPVTALLIIILLPVLGG-----------VDPVAAKEAFSGFGSPTVWLIIGGFIIGAALEKTGLDKRIALWLLKRFGG 117 (471)
T ss_pred CChHHHHHHHHHHHHHHhc-----------cccccHHHHHHHHcCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCC
Confidence 5666566555544434332 23 488899998899999999999999999999999999999997765
Q ss_pred hh-----HHHHHHHHHHHHhcCHH-HHH-HHhhhhcc--cCCC--CCh--------hHHHHHHHHHhhccccccccchhh
Q 040250 278 ID-----LIASAIGVVSAVIDNVP-LVA-ATIGMYDL--TSLP--QDS--------EFWQLIAYCASTGGSMLIIGSAAG 338 (395)
Q Consensus 278 ~~-----~~~~~~~~lS~~i~N~p-~~~-~~~pi~~~--~~~~--~~~--------~~~~~l~~~~~~gg~~tpigs~an 338 (395)
.. .+.....+++.++.+.. .+. ++.|+... .+.+ .+. ...+..++++++||..++.|+++|
T Consensus 118 ~~~~l~~~~~~~~~~l~~~~ps~~a~~~~i~~pi~~~i~~~~~~~~~~~~~~~~~~~l~l~~~~~a~~~g~~~~~g~~~n 197 (471)
T PF00939_consen 118 SPKGLLFAIMLAGLLLSFFIPSTTARAAPILLPILLSICEALGSKPSSKTPRNLGKALMLGIAFAASIGGMGTLTGSAPN 197 (471)
T ss_pred chheehhHhhHHHHHHhccCccHHHHHHHHHHHHHHhhhhcccchhhhhHHHHHHHHHHHHHhhhccccccccccCCCch
Confidence 43 24455666777775543 333 34488752 2222 211 144667788889999999999999
Q ss_pred HHHhcc------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040250 339 VAFMGM------EKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLH 378 (395)
Q Consensus 339 ~i~~~~------~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~ 378 (395)
.+..+. .+++|.||+++++|.+++..+....+.+.+++..
T Consensus 198 ~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~~~~~l~~~~ 243 (471)
T PF00939_consen 198 LIAAGFLESATGISISFLDWFIYALPPGIIMLVLMWLILYKLFKPD 243 (471)
T ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 998765 3599999999999999998888887777777554
No 59
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=99.18 E-value=1.3e-07 Score=97.99 Aligned_cols=333 Identities=14% Similarity=0.086 Sum_probs=184.3
Q ss_pred HHHHHHHHH-HHHHHHHHhcCcHHHHHH---HHhcCCchhHHHHHHHHHHHHHHhhh----hHHHH-HHHHHHHHHhCCC
Q 040250 20 EIVFFLLGA-MTIVEIVDAHQGFKLVTD---NITTRKPRSLLWVVGFVTFFLSSILD----NLTTT-IVMVSLVRKLVPP 90 (395)
Q Consensus 20 ~~i~ll~g~-~~i~~~l~~sG~~~~la~---~i~~~~~~~l~~~~~l~~~~lS~~~~----n~~~~-~i~~Pi~~~l~~~ 90 (395)
++..-.+.. .++.+.++++|..|++-+ .+.|+.+-..--...+.+++.++... |++++ .+++|..||.+=+
T Consensus 165 ~vsa~~i~lFil~G~ll~~~G~~~~li~~a~~l~G~~rGGla~vaV~as~lfg~iSGS~~A~va~~G~itiP~Mkk~GY~ 244 (613)
T TIGR02123 165 QVSATYIFLFILFGAFLQKSGVGKFFIDLAFALAGKRRGGPAKVAVISSGLMGMISGSSVANVVTTGSFTIPLMKRAGYK 244 (613)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 444444444 455689999999999654 44554444444444455555555542 33222 3667888887544
Q ss_pred ChhhHHHHHHHHHHhhhccccccccccch-hhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCccc
Q 040250 91 SEYRKLLGAVVVIAANAGGVWSPIGDVTT-TMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSNV 168 (395)
Q Consensus 91 ~~~~~~l~~~i~~~an~gg~~tpiG~~~n-~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~ 168 (395)
+++ ..++.-++..+|...|-..+.. .+.+...+.|..|.+.....|+++.....+...++. |+++-+.+++
T Consensus 245 ~~~----Aaav~AaastlG~iiPPsmg~~afi~a~~~~vs~~~lf~AgiiPgll~~~~l~~~v~~~a~k~~~~~~~~--- 317 (613)
T TIGR02123 245 PEF----AGAVEAAASTGGQIMPPIMGAAAFIMAEFLGIPYTEIIIAAIIPALLYFFGVFMQVHLEAKKQGLKGLSK--- 317 (613)
T ss_pred HHH----HHHHHHHhhhcccccCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---
Confidence 333 2344445555555554443332 344667799999999888888887655554444443 3221111100
Q ss_pred ccccccCC-chhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc------ccC
Q 040250 169 LASEQMAP-RGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS------RIN 241 (395)
Q Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~------~v~ 241 (395)
++.++..+ -++.. ...+-.+++.... ..+..|.-.+..++...++.....+. ++++++++..+ +..
T Consensus 318 ~~~~~~~~~~~~~~-~lllPvivL~~il--~~g~TpteAa~~a~~~al~v~~~~~~----~r~l~~~~l~~~l~~~a~~~ 390 (613)
T TIGR02123 318 EQLPSPKTVLKAGW-YLLIPLVLLIVLL--LVGYSPIRAAFYSIALTLIVSLLSRK----DTRMGLGEIFGALEDGARNA 390 (613)
T ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHH--HcCcCHHHHHHHHHHHHHHHHHHHHh----ccCcCHHHHHHHHHHHHHHH
Confidence 01111100 01111 1111111111111 12344544444454444344321100 12345544332 122
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC-chh----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCCh
Q 040250 242 MQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP-NID----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDS 314 (395)
Q Consensus 242 w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~-~~~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~ 314 (395)
-...+.+++.-++++.+..+|+.+.+++.+.+..+ +.. ...+++.++..+++.++...+..|+... .++|.|
T Consensus 391 ~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~~~~~Lll~~l~~lilGm~l~~~a~~ii~~pi~~P~l~~lGid- 469 (613)
T TIGR02123 391 VPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGNLFLLLILTMIACIILGMGLPTTANYIITATLAAPALIALGVP- 469 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHcCCC-
Confidence 35566777777889999999999999999999765 332 2345567778899999999888887742 456654
Q ss_pred hHHHH--HHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHH
Q 040250 315 EFWQL--IAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGI 368 (395)
Q Consensus 315 ~~~~~--l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~ 368 (395)
+.+.. +.+...+| ..||.=..+-..+.+..+.+..+-.|..+|+.+...++-.
T Consensus 470 pi~~~~~v~~~~~ig-~iTPPvgl~lfvaa~Ia~~~~~~~~~~~~p~~~~~~~~~~ 524 (613)
T TIGR02123 470 PIAAHMFVFYFGILA-DITPPVALAAFAAAGIAGADPMKTGFEAFKLALAGYLVPF 524 (613)
T ss_pred HHHHHHHHHHHHHHH-cCCCCchHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33333 33344555 5565544555556666788888888888888876665443
No 60
>PRK10034 fructuronate transporter; Provisional
Probab=99.16 E-value=2.2e-07 Score=92.66 Aligned_cols=137 Identities=11% Similarity=0.026 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.+++.+.+.+++.+.. +....+....++...++|+|-.|++++.+.|. +.+|..+.+++.+++++--+=-+++..++.
T Consensus 46 ~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~kr~~~a~~l~g~llGi~vF~dv~~v~la 125 (447)
T PRK10034 46 LMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYVQLSVIIIGLIFGLAMFYEVAFIMLA 125 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCccchHHHHHHHHHHHhhHHHHHhHHHhhH
Confidence 4556777888886554 46666677778999999999999999999752 445666777766666543333457777889
Q ss_pred HHHHHhC-C-CChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHH
Q 040250 82 SLVRKLV-P-PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSA 142 (395)
Q Consensus 82 Pi~~~l~-~-~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~ 142 (395)
|+++++. + +.+..+ +.++.+.+...+-...|= +|.-+-+++..+.+..+.+.+-.+.++
T Consensus 126 Pi~~~lak~~~~s~~~-~~~~l~~gl~~~h~lvPP-~Pgpla~a~~l~a~lG~~il~Gl~v~i 186 (447)
T PRK10034 126 PLVIVIAAEAKIPFLK-LAIPAVAAATTAHSLFPP-QPGPVALVNAYGADMGMVYIYGVLVTI 186 (447)
T ss_pred HHHHHHHHHhCcCHHH-HHHHHHHHHHHhhcccCC-CCcHHHHHHHhCCcHHHHHHHhhHHHH
Confidence 9998872 2 222211 234555555565555554 344444455567776676666544333
No 61
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=99.16 E-value=2.4e-07 Score=89.18 Aligned_cols=328 Identities=11% Similarity=0.072 Sum_probs=184.3
Q ss_pred HHHHHHHHHH-HHHHhcCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHHhhhhH-HHHH----HHHHHHHHhCCCChh
Q 040250 23 FFLLGAMTIV-EIVDAHQGFKLVTDNI---TTRKPRSLLWVVGFVTFFLSSILDNL-TTTI----VMVSLVRKLVPPSEY 93 (395)
Q Consensus 23 ~ll~g~~~i~-~~l~~sG~~~~la~~i---~~~~~~~l~~~~~l~~~~lS~~~~n~-~~~~----i~~Pi~~~l~~~~~~ 93 (395)
++-+-.|+++ +.|++.|..||+-+.. +|+.+..+-..-...+.+.++...+. +.++ ++.|-.++-+-++.+
T Consensus 10 LlAiPfFIlaG~lM~~gGi~~Rli~fa~a~vGh~rGGL~~v~i~~s~lf~~iSGSa~Ad~aa~Gsi~ip~M~k~GY~~~~ 89 (379)
T COG1593 10 LLAIPFFILAGELMNSGGIAKRLIDFANALVGHIRGGLAYVNIVASMLFGGISGSAVADAAALGSILIPEMKKRGYPAAF 89 (379)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhCCccchHHHHHHHHHHHHhcccccHHHHHHHHHHHhHHHHHHcCCCHHH
Confidence 3334444554 8899999999998765 46666666666667777777765433 2222 556666654323222
Q ss_pred hHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCccccccc
Q 040250 94 RKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSNVLASE 172 (395)
Q Consensus 94 ~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 172 (395)
. .-..+-++.+| ...|=+.+-+++ +...+.|..+.+.....|.++..+......++. |+++-+.++... .++
T Consensus 90 a---a~l~a~s~~ig-~lIPPSi~~IIy-g~~a~~SI~~LF~aGi~PGlLl~~~lm~~~~~~a~~~~~~~~~~~s--~~e 162 (379)
T COG1593 90 A---AALTAASGIIG-PLIPPSIPFIIY-GVAAGVSIGKLFVAGIVPGLLLTLALMVVAYIVARKRGYPREERAS--FKE 162 (379)
T ss_pred H---HHHHHhhcccc-ccCCCCchHHHH-HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCC--HHH
Confidence 1 11233333333 333434444433 334568999988888888887766666666554 333211110000 001
Q ss_pred ccCCchhHHHHHHHhHHHHHHHhhhhcC-CChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHh----c--ccCchHH
Q 040250 173 QMAPRGQLVSTVGTGALIFVPVFKALTG-LPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQAL----S--RINMQVP 245 (395)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~----~--~v~w~~l 245 (395)
..+.-++..+.+.+-+++..-.. .| ..+.-.+-+++...++.+.+.+| .++++|.. + +..-..+
T Consensus 163 ~~~~~~~a~~aLllpvIIigGi~---~G~fTpTEaa~iav~yal~v~~~vYr------~l~~~~l~~~l~~a~~~t~~Vm 233 (379)
T COG1593 163 RLKAAVKALWALLLPVIIIGGIR---SGIFTPTEAAAIAVLYALLVGAFVYR------ELTLKELPKVLLEAVKTTAVVM 233 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHh------hccHHHHHHHHHHHHHHHHHHH
Confidence 11100111111221111111111 12 22322333444444444422222 23333332 1 2223456
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHhcCHHHHHHHhhhhc--ccCCCCChh-HHH
Q 040250 246 LFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVIDNVPLVAATIGMYD--LTSLPQDSE-FWQ 318 (395)
Q Consensus 246 ~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i~N~p~~~~~~pi~~--~~~~~~~~~-~~~ 318 (395)
+.+++.-..+..+..+++.+.+++++.+..+++. .+.+..-+.-+|+|-.|...++.|+.. ..+.|.|+- +-.
T Consensus 234 ~iva~a~~f~~~lt~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~~a~ilil~Pil~Pi~~~~GIDPvhfGv 313 (379)
T COG1593 234 FIVAAAAAFAWLLTVEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDLTAAILILTPILLPIAAALGIDPVHFGV 313 (379)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCceeeHH
Confidence 7777778888899999999999999999887764 244556677889999999999888874 245555532 234
Q ss_pred HHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHH
Q 040250 319 LIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAG 367 (395)
Q Consensus 319 ~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~ 367 (395)
...+..++|....|+|. .-.+..+..+.+..+..|.-+|+-+.....-
T Consensus 314 v~v~Nl~IGliTPPvG~-~Lfv~s~V~~~~~~~~~k~i~Pfl~~~~~~L 361 (379)
T COG1593 314 VFVLNLSIGLITPPVGM-VLFVASAVGKVPIEAVIKAILPFLVALILVL 361 (379)
T ss_pred HHHHHHHhhCCCCCcch-hHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566667877777882 2233445578999999999999987665443
No 62
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=99.10 E-value=5.5e-07 Score=88.81 Aligned_cols=334 Identities=11% Similarity=0.027 Sum_probs=177.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAH-QGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~s-G~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
+++..+.+++ ...-.+.+.++++...+.+.++|+ |-.|++++++.+. +.++..+...+.+. + +-.+...++.
T Consensus 42 ~~~i~~~i~~-~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~g~~~~~~ap~liG~-l----Pv~~g~vila 115 (387)
T TIGR00529 42 LEGFLWTLSL-ADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIFSKNSDSFVPALIGL-M----PMPGGALFSA 115 (387)
T ss_pred HHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCcccHHHHHHHHHH-h----hHHHHHHHHH
Confidence 4566666666 545566777777777788899999 9999999998742 22333343333333 2 3346666788
Q ss_pred HHHHHhCC--CChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhhhhcc
Q 040250 82 SLVRKLVP--PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVN 159 (395)
Q Consensus 82 Pi~~~l~~--~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~~~~~ 159 (395)
|+++++.+ +.+..+ +......+-...=...|. .|.-+.+++..|.+......+.+|.++...+..+...+ |+.+
T Consensus 116 Plv~~la~~~~~s~~~-~~~~~~~~~~v~h~~~Pp-~Pgpi~aa~~l~~~lg~~il~gl~i~i~~~i~G~~~~~--~~~~ 191 (387)
T TIGR00529 116 PMVKNSLKEERINPEK-LTVKNYWFRHTWEFFWPI-YPAVVLVSALSGIHPGKVSLTLFPVFAIAFFLGWFFFN--GKQL 191 (387)
T ss_pred HHHHHHHHHhCcCHHH-HHHHHHHHHHHHHhhcCC-CchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHc--Cccc
Confidence 99877621 111111 233444444554455666 45555556666888888888888777766544443322 2211
Q ss_pred ccccCCcccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHH-hc
Q 040250 160 RKGQESSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQA-LS 238 (395)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~-~~ 238 (395)
++. . +++++...-......+. +.+.-.... .++.. +++...+..... +..+ +.+.++. .+
T Consensus 192 ~~~--~---~~~~~~~~~~~l~PI~l---il~~s~~~~---~~~~~-al~a~~l~~~~~---~~~~----~~~~~~~~~~ 252 (387)
T TIGR00529 192 PCL--S---KPRNLFDSFFNLYPIII---VLGTSVLIL---LDKLS-GWFALLLSTSIY---NVFR----RRYLLETLKR 252 (387)
T ss_pred ccc--c---cccccCcccHHHHHHHH---HHHHHHHHh---cChHH-HHHHHHHHHHHH---Hhcc----HHHHHHHHHH
Confidence 110 0 11111100011111111 111111111 23322 222221111111 0001 1122332 34
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHH--HHHhcCHHHHHHHhhhhcccCCCCChhH
Q 040250 239 RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVV--SAVIDNVPLVAATIGMYDLTSLPQDSEF 316 (395)
Q Consensus 239 ~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~l--S~~i~N~p~~~~~~pi~~~~~~~~~~~~ 316 (395)
.++|..++..++.....+.+++||+.|.+++.+.+.--+...+.++...+ +.--....++.++.|+.....-+. ++
T Consensus 253 al~~~illii~agg~fk~vL~~sGi~~~l~~~~~~~~ip~~~l~~lia~ilg~~tGa~it~agi~~Pll~~~~~~~-~~- 330 (387)
T TIGR00529 253 VFNKWIFLLLFAVMIYKVVIEHSGVGESIAAEFVSWNLPPWILLILLPLVSGISTGITQAYVGISLPLLMEFFSSA-KY- 330 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCch-hH-
Confidence 67777999999999999999999999999999887422222222222221 111133445566678863211111 12
Q ss_pred HHHHHHHHhhccc-cccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Q 040250 317 WQLIAYCASTGGS-MLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAA 370 (395)
Q Consensus 317 ~~~l~~~~~~gg~-~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~ 370 (395)
..++++++.||. ..|+... -.+..++.+.|.+|-+|.-.+...+....++.+
T Consensus 331 -~~l~la~g~g~~~~Shvnd~-fwl~~eyf~~~~~~~~k~~~~~~~~~~~~~~~~ 383 (387)
T TIGR00529 331 -AVLTYMFGYGGVILSPVHLC-VVLSAEYFGVEVFKIYRKVLLPLVLTLILGALV 383 (387)
T ss_pred -HHHHHHHHhhhhccCccccc-hhHhHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665 4666544 444445678999999998777777666665543
No 63
>PRK09921 permease DsdX; Provisional
Probab=99.08 E-value=1.4e-06 Score=87.31 Aligned_cols=362 Identities=9% Similarity=-0.020 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVS 82 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~P 82 (395)
.+++.+.+.+++.+.. .....+....++...|||+|..|++++.+.+-+.++.-+.....+.+.+-=+--+....++.|
T Consensus 48 ~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~~~~~~~~a~~~~gll~~IpvF~~~~~vil~P 127 (445)
T PRK09921 48 PLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSADVIMVLVGLICGITLFVEVGVVLLIP 127 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhhhhHHHHHHHHHHHHcccHHHHhHHHHHHH
Confidence 5777888888887766 566677777888999999999999999984322222222333333332211123334457889
Q ss_pred HHHHhC-C-CCh-hhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHH-HHHHHHhh-hh
Q 040250 83 LVRKLV-P-PSE-YRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAV-PLALLSLT-SE 157 (395)
Q Consensus 83 i~~~l~-~-~~~-~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~-~~~~~~~~-~~ 157 (395)
+++++. + +.+ .++.+ ..+.+....-...| ++|..+.+.+..|.+......+.++.++....+ .+++.++. |+
T Consensus 128 l~~~lak~~~~s~~~~~~--~~~~~~~~~h~~vP-p~Pg~~~~a~~lg~~lg~~~l~Gl~~~i~~~~i~~~~~~~~~~~~ 204 (445)
T PRK09921 128 LAFSIAKKTNTSLLKLAI--PLCTALMAVHCVVP-PHPAALFVANKLGADIGSVIVYGLLVGLMASLVGGPLFLKFLGNR 204 (445)
T ss_pred HHHHHHHHhCCCHHHHHH--HHHHHHHHhHhcCC-CCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 987762 1 222 22222 22222222222323 355554556667788777777777777554433 33333333 22
Q ss_pred ccccc--cCCcccccccccCCchhHHHH---HHHhHHHHH-HHhhhhc------------CCChHHHHHHHHHHHHHHHH
Q 040250 158 VNRKG--QESSNVLASEQMAPRGQLVST---VGTGALIFV-PVFKALT------------GLPPYMGILLGLGVLWILTD 219 (395)
Q Consensus 158 ~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~------------~i~~~~~a~~~~~~l~l~~~ 219 (395)
.+.++ ++.++.+++++.+.+...... +.-..++++ ....... --++. +++....++.++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~lP~~~~s~~~illPi~LI~~~~~~~~~~~~~~~~~~~l~f~g~p~-iALlig~l~a~~~l 283 (445)
T PRK09921 205 LPFKPVPTEFADLEVRDEKTLPSLGATLFTVLLPIGLMLVKTVAELNMAKEGTLYTLLEFIGNPI-TAMFIAVFVAYYIL 283 (445)
T ss_pred ccccCCCchhhhhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHhcCHH-HHHHHHHHHHHHHH
Confidence 21110 100110111111101111111 111111111 1111000 01222 23322222222111
Q ss_pred hhhccchhhcc-CCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHH-HHHHHHHHHHhcC-HH
Q 040250 220 AIHYGESERQK-LKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLI-ASAIGVVSAVIDN-VP 296 (395)
Q Consensus 220 ~~~~~~~~~~~-~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~-~~~~~~lS~~i~N-~p 296 (395)
..+++++.+.. ...+++++.+- ++++..++.-.+++.+++||..|.+++.+.+.-.++.++ .++++++.....+ +.
T Consensus 284 ~~~~~~~~~~~~~~~~~al~~~~-~illi~GaGGafg~Vl~~sg~~~~i~~~l~~~~~~pl~~~~liaa~l~~a~GSaTv 362 (445)
T PRK09921 284 GIRQHMGMGTLLTHTENGFGSIA-NILLIIGAGGAFNAILKSSGLADTLAVILSNMHMHPILLAWLVALILHAAVGSATV 362 (445)
T ss_pred HHhccCcHHHHHHHHHHHHHHHH-HHHHHHhccHhHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccHH
Confidence 01111100000 01233443331 233333333577889999999999999998753233333 3344454443333 22
Q ss_pred HH----HHHhhhhcccCCCCChhHHHHHHHHHhhccc-cccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 297 LV----AATIGMYDLTSLPQDSEFWQLIAYCASTGGS-MLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAY 371 (395)
Q Consensus 297 ~~----~~~~pi~~~~~~~~~~~~~~~l~~~~~~gg~-~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~ 371 (395)
.. .++.|... ...+.++. +. .++.+.|+. ..-+.++-=-+..+..+.|.+|=+|.-.+...+.-+++.+..
T Consensus 363 a~~taa~i~~p~l~-~~~g~~p~-~l--vlai~aGsl~~shvNDs~fW~~~~~~glt~k~t~k~~t~~~~i~~~~~~~~~ 438 (445)
T PRK09921 363 AMMGATAIVAPMLP-LYPDISPE-II--AIAIGSGAIGCTIVTDSLFWLVKQYCGATLNETFKYYTTATFIASVVALAGT 438 (445)
T ss_pred HHHHHHHHHHHHhh-ccCCCCHH-HH--HHHHhcCCcccccCCCCccHHHHHHhCCCHHHHhHhhHHHHHHHHHHHHHHH
Confidence 22 24567652 11134332 22 334444543 233322222344456788888888876666655555655544
Q ss_pred HHH
Q 040250 372 LAV 374 (395)
Q Consensus 372 ~~~ 374 (395)
+.+
T Consensus 439 ~~~ 441 (445)
T PRK09921 439 FLL 441 (445)
T ss_pred HHH
Confidence 433
No 64
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=99.02 E-value=1.4e-07 Score=89.14 Aligned_cols=345 Identities=11% Similarity=0.111 Sum_probs=190.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc-----CCchhHHHHHHHHHHHHHHhhhhHHH-----H
Q 040250 9 SELSRASA-EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT-----RKPRSLLWVVGFVTFFLSSILDNLTT-----T 77 (395)
Q Consensus 9 ~~~~~~~~-~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~-----~~~~~l~~~~~l~~~~lS~~~~n~~~-----~ 77 (395)
++.+..++ +-.+....+...+=++..|++.|..|.+.+...| |+|..++..-.+++.++|.++++.+- .
T Consensus 62 e~i~~~ls~r~agLgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~ikspy~ll~~ay~i~~~m~~ai~SAtGlg~llm 141 (451)
T COG3069 62 EYIKRLLSNRGAGLGMMIMALCGFARYMTHIGANDAVVKLASKPLKYIKSPYLLLIAAYFVACLMSLAIPSATGLGVLLM 141 (451)
T ss_pred HHHHHHHhcccccHHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhhcccHHHHHHHHHHHHHHHHHcccccchHHHHH
Confidence 34444443 3346788888889999999999999999888764 78888888999999999999875531 1
Q ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHH-hhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-
Q 040250 78 IVMVSLVRKLVPPSEYRKLLGAVVVIA-ANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT- 155 (395)
Q Consensus 78 ~i~~Pi~~~l~~~~~~~~~l~~~i~~~-an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~- 155 (395)
+.+.|+.+.++-++.. +.+.. +..+..+.|.++ -..++++..+++..||+...-+|..++.++......++
T Consensus 142 aTLfPvlv~~Gvsr~a------aaAi~Ast~~i~lsp~s~-~sv~aAe~sgm~i~~~~~~~~lpv~i~~iI~~ai~hff~ 214 (451)
T COG3069 142 ATLFPVLVNLGVSRGA------AAAICASTAAIILSPTSG-DSVLAAQVSGMKIADFAFHYQLPVSIAAIIGMAIAHFFW 214 (451)
T ss_pred HHHHHHHHHhcccchh------hHHHhhchHHheeCCCCc-chHHHHHhcCCceEeeeeccCcHHHHHHHHHHHHHHHHH
Confidence 2446888888655332 23333 344444455433 33456667788888887777777777766666555332
Q ss_pred -h--hccccccCCcccccccccCCchhHHHHHHHh---HHHHHHH---hhhhcCCChHHHHHHHHHHHHHHHHhhhccch
Q 040250 156 -S--EVNRKGQESSNVLASEQMAPRGQLVSTVGTG---ALIFVPV---FKALTGLPPYMGILLGLGVLWILTDAIHYGES 226 (395)
Q Consensus 156 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~ 226 (395)
| ++++..+. | ..|.++++.+.-....+.-+ ..++.-+ ..++.......+.+++..+..+.- +++.++
T Consensus 215 qr~~Dkk~~~~~-e-~~eq~~~~~~~p~~YAilPl~PlI~~lig~~~~~l~~ikl~i~t~mlI~l~i~m~ve-firk~n- 290 (451)
T COG3069 215 QRYLDKKENIEH-E-MLEQKEIDTVVPAFYAILPLTPLIGVLIGFDGKGLPQIKLHIITIMLISLLIAMLVE-FLRKFN- 290 (451)
T ss_pred HHHhhhhcccch-h-HHHHhhhccCCchhhhhhhhhhHHHHHHhhccccchhhhhhhHHHHHHHHHHHHHHH-Hhcccc-
Confidence 2 21111111 1 11222222111111111111 1111100 001112222233445554444443 222221
Q ss_pred hhccC-CHHHHhcccC---chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHH---HHHHHHHHh---cCHH
Q 040250 227 ERQKL-KVPQALSRIN---MQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIAS---AIGVVSAVI---DNVP 296 (395)
Q Consensus 227 ~~~~~-~~~~~~~~v~---w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~---~~~~lS~~i---~N~p 296 (395)
.|+.. +.++.+++.. =+++.++.+.-+.+++|+.+|..|.+-+.....-.+...+.+ +...+.++. .|.|
T Consensus 291 ~k~~~~~l~~ff~GMg~~fanVV~liVAa~vFA~GL~tiGaIdalI~~a~~~g~g~~~vmli~~l~~~L~aIvtGSGnAp 370 (451)
T COG3069 291 LKEVMDDLEAFFDGMGDAFANVVMLIVAAGVFAQGLKTIGAIDALISGATSFGSGGIGLMLILVLLTFLAAIVTGSGNAP 370 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHhhHhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCch
Confidence 12222 2223333322 255666777777799999999999998877754333222222 222333332 5666
Q ss_pred HHHHH--hhhhcccCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHH
Q 040250 297 LVAAT--IGMYDLTSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAA 366 (395)
Q Consensus 297 ~~~~~--~pi~~~~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~ 366 (395)
..+.- +|=.. .++|.++ .+.++...++++|-.+.|+... .....+..+++..|..|..-+..++.++.
T Consensus 371 f~AF~~lip~~A-a~lgi~~v~l~mpm~~As~igRt~SPisgV-vvavaG~a~vSPfe~vKRts~pm~~~lv~ 441 (451)
T COG3069 371 FIAFVELIPKLA-AGLGINPVYLIMPMLQASALGRTLSPVSGV-VVAVAGMAKVSPFEVVKRTSVPMLVGLVT 441 (451)
T ss_pred hhhHHhhcchhh-hhcCCChHHHhhhHHHHHhhccccccccce-eeeeccccccChhheeeccCcchhhHHHH
Confidence 65421 22211 2344443 3457788889999888998432 23334567899999998766666555443
No 65
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.2e-08 Score=103.20 Aligned_cols=147 Identities=15% Similarity=0.106 Sum_probs=125.1
Q ss_pred CHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHH-HHhcCHHHHHHHhhhh
Q 040250 232 KVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVS-AVIDNVPLVAATIGMY 305 (395)
Q Consensus 232 ~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS-~~i~N~p~~~~~~pi~ 305 (395)
+.++.....+|++++.+.++|.+..+++++|..+.++..+.+..+..+ .+..++.++| .+.+|++....+.|+.
T Consensus 73 ~~~~~l~~~~~~~I~l~~~~f~~s~~~~~~gl~~~la~~~l~~~~~~p~~l~~~l~~~~~~ls~~~~sntat~~i~~piv 152 (461)
T COG0471 73 ASKLALSGFANSTIWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTPRGLALGLVLLTLFLSPAFPSNTATGGIMLPLI 152 (461)
T ss_pred cHHHHHHHhhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCceecccchhHhhHHhh
Confidence 568899999999999999999999999999999999999998876433 3567788888 8999999889999998
Q ss_pred cc--cCCCCCh------hHHHHHHHHHhhccccccccchhhHHHhcccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 306 DL--TSLPQDS------EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEK---VDFFWYFRKVSGFAFAGYAAGIAAYLAV 374 (395)
Q Consensus 306 ~~--~~~~~~~------~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~---~~~~~~~k~g~p~~lv~~~~~~~~~~~~ 374 (395)
.. ...+.++ ...+....++++|+..||+|+++|.+..+..+ +++.||.+.+.|..++....+..+.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~~~~~~~~~w~~~~~p~~iv~l~~~~li~~~~ 232 (461)
T COG0471 153 LSLSPLLGSPPRDKIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLNPISLSWGEWFLAMLPLGILLLLLLLLLLYKL 232 (461)
T ss_pred hcchhhcCCChHHHHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhcccCCCHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 63 2233222 24567888999999999999999999998876 9999999999999999999998888888
Q ss_pred Hhhc
Q 040250 375 NSLH 378 (395)
Q Consensus 375 ~~~~ 378 (395)
++..
T Consensus 233 ~~~~ 236 (461)
T COG0471 233 FPPR 236 (461)
T ss_pred cChH
Confidence 7653
No 66
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=98.99 E-value=3.3e-06 Score=83.63 Aligned_cols=111 Identities=7% Similarity=0.077 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 040250 7 AVSELSRASAEVSEIV-FFLLGAMTIVEIVDAHQGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLV 84 (395)
Q Consensus 7 ~~~~~~~~~~~~~~~i-~ll~g~~~i~~~l~~sG~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~ 84 (395)
+.+.+.+++.++...+ ..+....++...+|++|.-+++|+.+.|+ ..||..+.+.+.+++++--+.-+....++.|++
T Consensus 47 i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G~kr~~~Al~l~g~i~~~~vF~dv~~v~l~Pia 126 (442)
T COG2610 47 VVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFGEKRALLALVLAGLILGIPVFFDVGFVLLIPLA 126 (442)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhHHhhhHHHHHHHHH
Confidence 3388899998776644 44444556778899999999999998753 555678999999999988888889999999999
Q ss_pred HHhCC--CChhhHHHHHHHHHHhhhccccccccccc
Q 040250 85 RKLVP--PSEYRKLLGAVVVIAANAGGVWSPIGDVT 118 (395)
Q Consensus 85 ~~l~~--~~~~~~~l~~~i~~~an~gg~~tpiG~~~ 118 (395)
+++.+ +.+.++ +..+.+-+.....+..|-+.+|
T Consensus 127 ~alak~~~is~~~-i~v~la~g~~~~h~~vpP~Pgp 161 (442)
T COG2610 127 FALAKEAGISLLK-IAVPLAAGLSVTHMFVPPHPGP 161 (442)
T ss_pred HHHHHHcCCCHHH-HHHHHHHHHHHhcccCCCCCch
Confidence 87722 222222 2344555544444555554333
No 67
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=98.95 E-value=4e-08 Score=98.41 Aligned_cols=138 Identities=9% Similarity=0.040 Sum_probs=107.0
Q ss_pred cCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch-----hHHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCC
Q 040250 240 INMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI-----DLIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQ 312 (395)
Q Consensus 240 v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~-----~~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~ 312 (395)
++|++++++.+++...+++++||..|+.++...+...+. ..+.+++.++|.+.+|...+..+.|+... .+.+.
T Consensus 46 ~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~lli~i~~~lfs~~~~~~~~~i~~~PI~i~ia~~lG~ 125 (433)
T PRK09412 46 IPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYITFLAPIVTYLFTFLAGTGHIAFSTLPVIAEVAKEQGI 125 (433)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998776655432 13556677888777777666778888752 33333
Q ss_pred Ch-hHHHHHHHHHhhccccccccchhhHHHhccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 313 DS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGME--KVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 313 ~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~--~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
++ .......+++++|+..+|+|.+++.+..... ++++.|++++.+|..++...+++.+.+...++
T Consensus 126 d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia~~gi~f~~~~~~~lp~~iv~~~~~~~~~~~ya~k 193 (433)
T PRK09412 126 RPSRPLSIAVVASQIAITASPISAAVVAMSSVLEPLGVSYLTLLMVVIPSTLLAVMVAAFVTNKMGKE 193 (433)
T ss_pred CCcchHHHHHHHHHHhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 2345667889999999999988777765544 79999999999999999988887766666543
No 68
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=98.95 E-value=6.1e-06 Score=83.13 Aligned_cols=343 Identities=13% Similarity=0.063 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhhh-hHHHHHH--
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT-RKPRSLLWVVGFVTFFLSSILD-NLTTTIV-- 79 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~-~~~~~l~~~~~l~~~~lS~~~~-n~~~~~i-- 79 (395)
.+|..+..-|++++..+.+..++-.-.+.+.+..+|..+.+.++-.+ -+|+.++...+++++++|.... +.++...
T Consensus 52 ~~~~~~~~~~g~~~~~~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~i~p~~~~~~~Fl~~~~~s~~~Gss~gt~~~~g 131 (454)
T TIGR00931 52 YNDLESAIIDGIKIGIKAILILALVGILIGTWIMGGTVPTLIYYGLSIISPEWFAVSTLLICMIVSSFTGTSWGTVGTIG 131 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45666777777777777666666666778899999999988765443 4889999999999999998885 4555555
Q ss_pred --HHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-h
Q 040250 80 --MVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-S 156 (395)
Q Consensus 80 --~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~ 156 (395)
+.|+..+++-+.+ ...-.+.-++..|--..|++|.+| ..+...+.+..|.++++.|.++...+++.+...+. +
T Consensus 132 ~~l~~i~~~~g~~~~---~~agai~sGa~fGD~~sP~Sdtt~-l~a~~~~~~~~~~v~~~~~~~~~a~~i~~v~~~i~g~ 207 (454)
T TIGR00931 132 VAMMGIGTGLGIDLA---IAAGAVVCGAYFGDKLSPLSDTTN-FASGIVGVDLFDHIRHLLYTTVPSFVITAILFLVIGR 207 (454)
T ss_pred HHHHHHHHHcCCCHH---HHHHHHHHHHHHcCCCCCCCcHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4565566655432 223345556777889999999998 55566778999999999988777666665555443 2
Q ss_pred hccccccCCcc---cc-cccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccch------
Q 040250 157 EVNRKGQESSN---VL-ASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGES------ 226 (395)
Q Consensus 157 ~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~------ 226 (395)
..+++..+.++ .. ..++..+... ..++-.++++... ..+.+.......+...-.++... .++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--l~LlP~ilvIiLa---l~~~~vi~aL~igi~~g~ii~~~-~qg~s~~~~~~ 281 (454)
T TIGR00931 208 SYATSNTQPDKVQAMLTALDSQFTLSV--LTLIPPLLVVILA---MRKKPTIPVLVVGALTGIITAAF-VQGADVVRWIT 281 (454)
T ss_pred ccccccCcHhHHHHHHHHHHccCCCCH--HHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHHHHHH-hCCCCHHHHHH
Confidence 21111110000 00 0011111111 1111111111111 12333332222222222222110 01000
Q ss_pred ----hhc----cCCHHHHhcc--cC--chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh---HHHHHHHHHHH-
Q 040250 227 ----ERQ----KLKVPQALSR--IN--MQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID---LIASAIGVVSA- 290 (395)
Q Consensus 227 ----~~~----~~~~~~~~~~--v~--w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~---~~~~~~~~lS~- 290 (395)
+.+ ....++..++ +. .+++.++...+.+++.++++|..+.+.+++.+...+.. ...++++++.+
T Consensus 282 ~~~~G~~~~t~~~~v~~ll~~GGi~sM~~~i~lii~~~~lggil~~~G~l~~l~~~l~~~i~s~~~~~l~t~~~~~i~~~ 361 (454)
T TIGR00931 282 IAQNGFSMETGNEVLDGLLNRGGLQSMMWSLSLVMIALTFGGVLQRIGVLDVILQSANKKIISTWTFDCSTSTSSIGVNV 361 (454)
T ss_pred HHHcCccccccchHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHcCCCcceehHHHHHHHHHHH
Confidence 000 0011122211 11 13555666667778899999999999999988765442 33344444333
Q ss_pred H-hcCHHHHHHHhhhhcc--cCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHH
Q 040250 291 V-IDNVPLVAATIGMYDL--TSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVS 357 (395)
Q Consensus 291 ~-i~N~p~~~~~~pi~~~--~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~ 357 (395)
+ .||.....+.-++... .+.+.++ .+-..+--+++....+-|.+ .......+..+.+..+|+.|.+
T Consensus 362 i~~~~~~sil~~G~~~k~~~d~~~i~r~~LA~~ld~s~t~~~~LiPws-~~g~~~~~~lgv~~~~~iPy~f 431 (454)
T TIGR00931 362 VTCEQYLSILLPGKTFESFYTKLNLAKKNLSRTLEDAGTLVNPLIPWG-VSGAYMAGTLGVDTISYLPFAF 431 (454)
T ss_pred HHHhhhHHHHHhHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhHHHHH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 2 3444444333344432 3344432 22233333333444566773 3444444555777777766643
No 69
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=98.94 E-value=2.8e-07 Score=87.88 Aligned_cols=135 Identities=15% Similarity=0.270 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHH---HHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CCCCh
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLV---TDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL---VPPSE 92 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~l---a~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l---~~~~~ 92 (395)
.|+++.++....-++.|+.+|-.|++ |.|++||+|+++.+.--+++.+++.+....-+..-+.|+..+. .+-+|
T Consensus 44 idVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~It~lAP~vt~~~T~~~GTgh~a~s~lPVI~eVA~~~~IRP 123 (364)
T PF03605_consen 44 IDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKYITFLAPLVTYLFTFLAGTGHVAYSLLPVIAEVAKENGIRP 123 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCcEEEehhHHHHHHHHHhcccHHHHHhhHHHHHHHHHcCCCC
Confidence 47888889999999999999999977 5688899999999999999999999988777788888988654 12223
Q ss_pred hhHHHHHHHHHHhhhccccccccccchhhhhc--c-CCCChHHHHHHhHHHHHHHHHHHHHHHHhh
Q 040250 93 YRKLLGAVVVIAANAGGVWSPIGDVTTTMLWI--H-GQISTLPTMKSLFIPSAVSLAVPLALLSLT 155 (395)
Q Consensus 93 ~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~--~-~~isf~~~~~~~~p~~~v~~~~~~~~~~~~ 155 (395)
.|. +-...++++.|-.++|++...-.+++. . .++++.|.+....|-.+++.++..++..++
T Consensus 124 eRP--ls~svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~~iL~V~iPat~ig~~~~a~~~~~~ 187 (364)
T PF03605_consen 124 ERP--LSISVVASQIAITASPISAATVAMIAILAPAHGVSLLQILAVTIPATLIGVLVAAFVSSRR 187 (364)
T ss_pred CCc--hHHHHHHHhcchhcCcHHHHHHHHHHHHccccCCCHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 333 245778999999999998877666533 3 689999999888888888777776666555
No 70
>PRK11588 hypothetical protein; Provisional
Probab=98.94 E-value=2.6e-06 Score=85.57 Aligned_cols=351 Identities=11% Similarity=0.052 Sum_probs=171.6
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhh---hhH-H
Q 040250 9 SELSRASAE------VSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSIL---DNL-T 75 (395)
Q Consensus 9 ~~~~~~~~~------~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~---~n~-~ 75 (395)
.+..+++.+ -.+++++++-.--..+.++|||..|.-..++. |+|.+.++..++.+-++.++.. +.. +
T Consensus 94 ~ai~~G~~~g~~~~~aa~ii~filiiGG~f~vi~~TGAi~~~i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i~ 173 (506)
T PRK11588 94 NFPFEGLTSGSKWGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAIA 173 (506)
T ss_pred HHHHHHHhcccccccccceeehhhHHhhHHHHHHHhchHHHHHHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHHH
Confidence 345555543 23677776666667799999999998887775 5666666666665555555443 222 3
Q ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhc-cCCCChHH-HHHHhHHHHHHHHHHHHHH-H
Q 040250 76 TTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWI-HGQISTLP-TMKSLFIPSAVSLAVPLAL-L 152 (395)
Q Consensus 76 ~~~i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~-~~~isf~~-~~~~~~p~~~v~~~~~~~~-~ 152 (395)
-..+++|++++++-|.-.. ...+..++.+|-+..++ ||-+.-+++ ..+++.++ +..... ..++...+.... +
T Consensus 174 f~pi~v~l~~alGyD~ivg---~ai~~lg~~iGf~~s~~-NPftvgIAQ~iAglp~~SG~~~R~i-~~~v~~~i~i~yv~ 248 (506)
T PRK11588 174 FAIIIAPLMVRLGYDSITT---VLVTYVATQIGFATSWM-NPFSVAIAQGIAGVPVLSGSGLRIV-MWVIFTLIGLIFTM 248 (506)
T ss_pred HHHHHHHHHHHhCCcHHHH---HHHHHHHhhhhhccccc-CccHHHHHHHhcCCCccccHHHHHH-HHHHHHHHHHHHHH
Confidence 3346778888886553221 12345555555544444 777765544 34665432 222222 222223333222 3
Q ss_pred Hhhh---hccccc---cCC----ccc--ccccccCCchhHHHHHHHhHHH-HHHHhhhhcCCCh-HHHHH-HHHHHHH-H
Q 040250 153 SLTS---EVNRKG---QES----SNV--LASEQMAPRGQLVSTVGTGALI-FVPVFKALTGLPP-YMGIL-LGLGVLW-I 216 (395)
Q Consensus 153 ~~~~---~~~~~~---~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~-~~~a~-~~~~~l~-l 216 (395)
+|.| +++++. ++. ++. .++.+++.|+|.+..+++..+. +.+-. ...|+.. +..++ +..+++. +
T Consensus 249 ~YA~kVkkdP~kS~~~~~~~~~~~~~~~~~~~~~t~r~klvL~~f~~~~~~~i~Gv-~~~gW~~~Eia~~Fl~~giv~G~ 327 (506)
T PRK11588 249 VYASRVKKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLLVLTAVMVWVIWGV-VVNAWFIPEIASQFFTMGLVIGL 327 (506)
T ss_pred HHHHHhcCCCcccccccchhhhhhhhccccccCcChhhHHHHHHHHHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHH
Confidence 3322 222211 000 000 0122455666666544433322 22211 1223322 22221 1111111 1
Q ss_pred HHHhhhccchhhccCCHHHHhcc--------cCchHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHhhcCchh----
Q 040250 217 LTDAIHYGESERQKLKVPQALSR--------INMQVPLFFLGILLSVSSLE-----AAGLMRKIGNYLDAHIPNID---- 279 (395)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~--------v~w~~l~~~~g~~~l~~~l~-----~tG~~~~la~~l~~~~~~~~---- 279 (395)
....++ .++++.+|..+. ..-..+..++..+ .-.++ +-...|.+-+.....+++.+
T Consensus 328 i~~~~~-----~~g~~~~~i~~~f~~Ga~~m~~~aliig~A~~i--~~il~~g~~~~g~iidTIv~~~~~~L~~lp~~~~ 400 (506)
T PRK11588 328 IGVVFR-----LNGMTVNTMASSFTEGARMMLAPALLVGFAKGI--LLLLGGGEPGDPSVLNTILNSAGGAISGLPDAVS 400 (506)
T ss_pred hhhhhc-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhccCccccchHHHHHHHHHHHhccCCHHHH
Confidence 111110 022344444322 1222233333333 33342 33366666666665554322
Q ss_pred --HHHHHHHHHHHHh-cCHHHHHHHhhhhcc--cCCCCChh-HHHHHHHHHhhccccccccchhhHHHhccccccHHHHH
Q 040250 280 --LIASAIGVVSAVI-DNVPLVAATIGMYDL--TSLPQDSE-FWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYF 353 (395)
Q Consensus 280 --~~~~~~~~lS~~i-~N~p~~~~~~pi~~~--~~~~~~~~-~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~ 353 (395)
.+.++..++.-|+ |...-.+++.|+... ...|.++. ...+.-++-......+|.+ ..-+...+..++++.+|+
T Consensus 401 ai~m~i~~~~lNffIpSgSGqAaitmPIm~Plad~lGisrq~avlAfq~GDg~tNlI~Pts-~~lm~~Laia~Ipy~kW~ 479 (506)
T PRK11588 401 AWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLADLVGVNRQVAVLAFQLGDGFTNIIYPTS-ASLMATLGVCRVDFGNWL 479 (506)
T ss_pred HHHHHHHHHHHHeEecChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHhhhhH-HHHHHHHHHhCCCHHHHH
Confidence 2445555665555 345555666777642 33344322 2244444444443457762 333334466899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040250 354 RKVSGFAFAGYAAGIAAYLA 373 (395)
Q Consensus 354 k~g~p~~lv~~~~~~~~~~~ 373 (395)
|+.+|+.++..+++.+.+..
T Consensus 480 Kf~~pl~~i~~v~~~v~l~i 499 (506)
T PRK11588 480 KFIWRFLLLLFIMSSVVVIG 499 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877765543
No 71
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=98.82 E-value=2e-07 Score=92.65 Aligned_cols=138 Identities=10% Similarity=0.074 Sum_probs=106.4
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch----hHHHHHHHHHHHHhcCHH-HHHHHhhhhcc----cC
Q 040250 239 RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI----DLIASAIGVVSAVIDNVP-LVAATIGMYDL----TS 309 (395)
Q Consensus 239 ~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~----~~~~~~~~~lS~~i~N~p-~~~~~~pi~~~----~~ 309 (395)
+.||++++++.+++...+++++||..|++.+.+.+..... ..+...++.++.|++|++ .+..++|+... .+
T Consensus 45 ~~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~i~llap~vt~l~afl~~Tg~~v~~~lPVi~~vA~k~g 124 (443)
T PRK12489 45 KPPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKYITILAPFVTYTLTFLCGTGHVVYSILPIIYDVALKNG 124 (443)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999999999999888764322 245566777779999998 58889999863 34
Q ss_pred CCCChhHHHHHHHHHhhccccccccchhhHHH---hcc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 310 LPQDSEFWQLIAYCASTGGSMLIIGSAAGVAF---MGM----EKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 310 ~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~---~~~----~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
.++..+ .....+++.+|...||++...|.+. .+. .++++.|+...++|.+++.......+.+...|.
T Consensus 125 i~Psrp-La~as~As~lGi~aSpin~~v~~l~~~l~~~~~~~~g~~~f~il~VgIP~~~ig~l~~~l~~~~~gk~ 198 (443)
T PRK12489 125 IRPERP-MAAASVASQMGITASPVSAAVVSLVAMLGNVTGEGRHITLLDILAVTIPATLIGVLAAALWSLRRGKD 198 (443)
T ss_pred CChhhh-HHHHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444333 4556777788888999988877663 221 458999999999999999888777655555443
No 72
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=98.82 E-value=7.7e-06 Score=80.31 Aligned_cols=323 Identities=15% Similarity=0.172 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---Chh
Q 040250 18 VSEIVFFLLGAMTIVEIVDAH-QGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPP---SEY 93 (395)
Q Consensus 18 ~~~~i~ll~g~~~i~~~l~~s-G~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l~~~---~~~ 93 (395)
.++++..++....+.+.++|. |..|+..+.+.+--+|.....+-.+- .+++.-+-+..-.|++++..++ ++.
T Consensus 53 ~~~~i~~il~i~~i~~~~~~~~g~l~~~~~~l~~l~~R~~~~~~PAlI----GLLPmpGGA~fSAPmV~~~~~~~~ls~e 128 (385)
T PF04165_consen 53 SWDTIVLILLIYFIMGLMEKLSGQLDRMVESLKGLFPRVSLAFIPALI----GLLPMPGGALFSAPMVEEAAEKMGLSPE 128 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCcceeehHHHHhhhhhccCCHH
Confidence 556666666667777888887 99999988775311132222221111 2234444445556888776221 122
Q ss_pred hHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhhhhccccccCCcccccccc
Q 040250 94 RKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQ 173 (395)
Q Consensus 94 ~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (395)
.|..+ =.+==-+.-...|. -|.-+++++-.|++..++...++|..+++.+..|..+ .|+.+++.++ ++ +
T Consensus 129 ~kt~i--NywFRHiwE~~~Pl-YpgiiLas~l~gi~~~~~v~~~~P~~~~~~~~G~~~~--~r~~~~~~~~-----~~-~ 197 (385)
T PF04165_consen 129 EKTFI--NYWFRHIWEFFWPL-YPGIILASALSGISVGEFVLAMWPITLLAFLIGWLFF--LRPLKKSEKK-----PR-S 197 (385)
T ss_pred HHHHH--HHHHHHHHHHHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH--hccccccccC-----Cc-c
Confidence 22111 00011111233455 2233344455689999999999988777766665433 2332211110 00 1
Q ss_pred cCCchhHHHHHH-HhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc-ccCchHHHHHHHH
Q 040250 174 MAPRGQLVSTVG-TGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS-RINMQVPLFFLGI 251 (395)
Q Consensus 174 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~-~v~w~~l~~~~g~ 251 (395)
. +....... +.+++++. -.+++|.......+.....+.. + ++..+.++.++ .++|.+++.+.+.
T Consensus 198 --~-~~~l~s~~Pil~~i~l~---v~~~l~~~~~~~~~~l~~~~~~----~----~~~~~~~~~l~~a~~~ki~~~i~~i 263 (385)
T PF04165_consen 198 --L-KDLLKSLWPILVIILLS---VLFKLPLALGLLIALLAILIYN----R----FRRKEIKEVLKEALEPKILLLIIGI 263 (385)
T ss_pred --h-HHHHHHHhHHHHHHHHH---HHHcchHHHHHHHHHHHHHHHh----c----cCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 12222111 11111111 1235665433222221111111 1 01112456554 6999999999999
Q ss_pred HHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHhc--CHHHHHHHhhhhcccCCCCChhHHHHHHHHHhhccc
Q 040250 252 LLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVID--NVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGS 329 (395)
Q Consensus 252 ~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i~--N~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~~~gg~ 329 (395)
+..-+.+++||+.|.+++.+.+.--+...+....-++..++. +.+.+.+-.|+.....-+ .....+++.+...|.
T Consensus 264 m~Fk~~l~~tG~~~~l~~~l~~~~ip~~li~~lipFivG~~TGi~~a~vgi~fPll~~l~~~---~~~~~la~~~g~~Gv 340 (385)
T PF04165_consen 264 MIFKEILEATGVVEELPEFLSSLGIPPFLIIALIPFIVGLITGITQAFVGIAFPLLAPLIGG---LPYLVLAYASGFAGV 340 (385)
T ss_pred HHHHHHHHHcChHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHH
Confidence 999999999999999999888742222222222222222222 244556667887532111 123456666665554
Q ss_pred -cccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 330 -MLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLA 373 (395)
Q Consensus 330 -~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~ 373 (395)
++|. ..+-.+..++.+.++++-+|..++..++..+++.+++++
T Consensus 341 mlSP~-HlCLvlT~eYFk~~~~~v~k~l~~p~~i~~~~~~~~~~~ 384 (385)
T PF04165_consen 341 MLSPV-HLCLVLTAEYFKADLGKVYKKLLPPALIFLAAGLLYYLL 384 (385)
T ss_pred hhchH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 466666667788999999999999988888878776553
No 73
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=98.81 E-value=4e-05 Score=77.11 Aligned_cols=103 Identities=12% Similarity=0.017 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSE--IVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~--~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.|.....+.+.+++|.+ .+..+.-+|+=.+..||+|+++...++.+++.|++......+...+.|...+...- ..+.
T Consensus 71 ~~g~~~~~~~~v~nf~~F~pLG~vlv~mlgvgvae~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~asdaGy-Vvl~ 149 (508)
T PRK11339 71 VEGLHWFLPNVIKNFSGFAPLGAILALVLGAGLAERVGLLPALMVKMASHVNARYASYMVLFIAFFSHISSDAAL-VIMP 149 (508)
T ss_pred HHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhhhhhH-HHHH
Confidence 44555556666666653 67777788888899999999999999999888888888888888888887765543 5566
Q ss_pred HHH----HHhCCCChhhHHHHHHHHHHhhhcccc
Q 040250 82 SLV----RKLVPPSEYRKLLGAVVVIAANAGGVW 111 (395)
Q Consensus 82 Pi~----~~l~~~~~~~~~l~~~i~~~an~gg~~ 111 (395)
|+. +.++++ |. ..+..++++..||..
T Consensus 150 PL~a~if~a~Gr~-Pl---aGia~~fagvs~Gfs 179 (508)
T PRK11339 150 PMGALIFLAVGRH-PV---AGLLAAIAGVGCGFT 179 (508)
T ss_pred HHHHHHHHHcCCC-hH---HHHHHHHHHHHhhhh
Confidence 665 444555 32 245566666666544
No 74
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=98.67 E-value=4.3e-08 Score=98.42 Aligned_cols=121 Identities=13% Similarity=0.203 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCC
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL----VPPS 91 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l----~~~~ 91 (395)
|++++++.|.+.++.+.+++|+.+++++.+. +-..+.+.+.++++..+++.|.+|++++.+++|++.++ +.+
T Consensus 433 WsIvlLlgGGfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~TeF~Sntata~IfiPIl~ela~~l~~h- 511 (586)
T KOG1281|consen 433 WSIVLLLGGGFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVVTEFVSNTATASIFIPILAELAEALGIH- 511 (586)
T ss_pred chHhhhhccchhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHhcchhheeehHHhHHHHHHhcCCC-
Confidence 8899999999999999999999999999885 45888899999999999999999999999999998766 333
Q ss_pred hhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHH
Q 040250 92 EYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAV 143 (395)
Q Consensus 92 ~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v 143 (395)
|.. ++++.+.++..+ ++.|+|+|||.++.+.+++...|+........+.
T Consensus 512 ply--l~lp~tl~~SfA-f~LPvstpPNaivfs~~~~k~~dm~~~G~~l~i~ 560 (586)
T KOG1281|consen 512 PLY--LMLPTTLACSFA-FMLPVSTPPNAIVFSMGDIKGKDMLKVGLFLNIG 560 (586)
T ss_pred Cce--eehhHHHHHHHH-HhcCCCCCCCeEEEeecccchhhHhhhccchhHH
Confidence 332 567899999886 7889999999999888888888887665554443
No 75
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=98.64 E-value=1.1e-06 Score=87.75 Aligned_cols=140 Identities=10% Similarity=0.051 Sum_probs=106.7
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch-----hHHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCC
Q 040250 238 SRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI-----DLIASAIGVVSAVIDNVPLVAATIGMYDL--TSL 310 (395)
Q Consensus 238 ~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~-----~~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~ 310 (395)
+++||++++++.++....+.+++||..|...+++.+...+. ..+.+++.++|.+.+|.-.+..+.|+... .++
T Consensus 40 ~~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~llipii~~lfs~~~g~~~~~l~f~PI~i~la~~l 119 (430)
T TIGR00770 40 GKIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYITILAPSVTYFLTILAGTGHVVYSTLPVIAEVAKEQ 119 (430)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999998777754331 24567778888888997777788888753 334
Q ss_pred CCCh-hHHHHHHHHHhhccccccccchhhHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 311 PQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGM--EKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 311 ~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~--~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
|.++ +......+++++|+..+|++.+.|.+.-.. .++++.|++.+..|..++.+.+++.+.+...++
T Consensus 120 G~d~i~~~ai~~~aa~iG~~as~in~~~~~~ig~~~~~Gi~f~~~l~~rip~~~v~l~v~~~~v~~y~~k 189 (430)
T TIGR00770 120 GIKPERPLSLAVVSSQIAITASPVSAAVVFMSAILEPLGIEYLDLLMVTIPSTFLGCMLTAFFVNFFGKK 189 (430)
T ss_pred CCCChhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4332 334566788999999999987655554322 379999999999999999888877654444443
No 76
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=98.63 E-value=9.6e-05 Score=74.68 Aligned_cols=350 Identities=11% Similarity=0.002 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---
Q 040250 8 VSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLV--- 84 (395)
Q Consensus 8 ~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~--- 84 (395)
.+...+++.++.+....++.+.- .+..||||++|...++.+++.|++....+.+...+.|...+...- ..+.|+.
T Consensus 74 ~~~~v~nF~~f~pLg~vlv~mlG-vGvae~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~asdaG~-vvl~PL~a~i 151 (513)
T TIGR00819 74 LPHTIKNFSGFAPLGAILALLLG-AGIAEKSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIASDAAL-VILIPLGALI 151 (513)
T ss_pred HHHHHHhhhcCccHHHHHHHHHH-HHHHHHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHH
Confidence 34445555555554433333333 899999999999999999888888888888888888888765543 5566665
Q ss_pred -HHhCCCChhhHHHHHHHHHHhhhccccc-cccccchhhhhc----cC-------CCC-hHHHHHHhHHHHHHHHHHHHH
Q 040250 85 -RKLVPPSEYRKLLGAVVVIAANAGGVWS-PIGDVTTTMLWI----HG-------QIS-TLPTMKSLFIPSAVSLAVPLA 150 (395)
Q Consensus 85 -~~l~~~~~~~~~l~~~i~~~an~gg~~t-piG~~~n~i~~~----~~-------~is-f~~~~~~~~p~~~v~~~~~~~ 150 (395)
++++++ |. ..+..++++..||... .+=++.|.+... .. .++ ..+|.. +..-.++..++.++
T Consensus 152 f~a~Gr~-Pl---aGia~~fagvs~GFsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~~~~n~~F-~~~s~~vl~~v~~~ 226 (513)
T TIGR00819 152 FHALGRH-PL---AGLAAAFAGVGCGFSANLFIGTIDPLLAGISQEAAAAFHPDMHVGPEANWFF-MAASTFVIAIIGGF 226 (513)
T ss_pred HHHcCCC-hH---HHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHhcCCCcccCccccHHH-HHHHHHHHHHHHHH
Confidence 445555 32 3456677666666543 111233433311 11 122 234542 33223333333333
Q ss_pred HHHhhh-hccccccCC---c--ccccccccCCchh--HHH-HHHH--hH-HHHHHHhh--hhcCC--------C---hHH
Q 040250 151 LLSLTS-EVNRKGQES---S--NVLASEQMAPRGQ--LVS-TVGT--GA-LIFVPVFK--ALTGL--------P---PYM 205 (395)
Q Consensus 151 ~~~~~~-~~~~~~~~~---~--~~~~~~~~~~~~~--~~~-~~~~--~~-~~~~~~~~--~~~~i--------~---~~~ 205 (395)
+..+.+ |+.+..+.. + +.++.++.++++| +.. .+.+ +. .+++.... ..+.- . .+.
T Consensus 227 vt~Kv~ePrl~~~~~~~~~~~~~~~~~~~~t~~EkkgLr~Ag~~~l~fia~l~ll~~P~~g~LR~~~tG~l~~SPf~~~i 306 (513)
T TIGR00819 227 ITDKIIEPQLGPWQGDLNQDEKDIRHLNEITELERFGLIIAGVVFIAFIAAIALMIIPADGILRDPENGLVAGSPFIKGI 306 (513)
T ss_pred HHhhhcCCCCCCCCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCccCChHHHhH
Confidence 333332 221111100 0 0011223443322 111 1111 11 11111120 11111 1 122
Q ss_pred HHHHHHHHHHHHHHhhhccchhhccCCHHHHh-------cc-cCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC-
Q 040250 206 GILLGLGVLWILTDAIHYGESERQKLKVPQAL-------SR-INMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP- 276 (395)
Q Consensus 206 ~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~-------~~-v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~- 276 (395)
+..+....+ +.+. . +....+...+.+|.. ++ ...-.+.+++..| ...++++++.+.++......+.
T Consensus 307 ipii~~~Fl-i~gi-v-yG~~~g~ik~~~di~~~m~~g~~~m~~~~vli~~A~~f--~~~f~~s~i~~~ia~~~A~~L~~ 381 (513)
T TIGR00819 307 VPFIFLFFA-LPGI-A-YGIATRSIRGEADLPHAMAEPMKELAGFIVIIFFAAQF--VAFFNWSNIGKFIAVGGADFLEE 381 (513)
T ss_pred HHHHHHHHH-HHHH-H-HHhhcCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCChHHHHHHHHHHHHHh
Confidence 222222111 1111 0 000001111223322 22 3445566666666 6778999999999999877652
Q ss_pred -c---hh---HHHHHHHHHHHHhcC-HHHHHHHhhhhcc--cCCCCChhHH-HHHHHHHhhccccccccchhh-HHHhcc
Q 040250 277 -N---ID---LIASAIGVVSAVIDN-VPLVAATIGMYDL--TSLPQDSEFW-QLIAYCASTGGSMLIIGSAAG-VAFMGM 344 (395)
Q Consensus 277 -~---~~---~~~~~~~~lS~~i~N-~p~~~~~~pi~~~--~~~~~~~~~~-~~l~~~~~~gg~~tpigs~an-~i~~~~ 344 (395)
+ .. .+.++++++.-|+.+ .+-.+++.|+... ...|.++... .+.-++-+.....||..+--. ++.+-.
T Consensus 382 ~~l~~~~~~i~~~l~~~~iNlfI~S~Sgkwal~aPI~vPm~~~lGisp~~t~~AyriGDs~tNiItP~~~y~~lil~~~~ 461 (513)
T TIGR00819 382 SGLAGIPAFIGFALICAFICLFIASASAIWAILAPIFVPMFMLAGFAPAFAQAAFRIADSSTLIIAPMMPFFGLFLAFLM 461 (513)
T ss_pred cCCChHHHHHHHHHHHHHHHheeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhchHHHhhccCcchHHHHHHHHH
Confidence 1 11 345566666666644 4555666677642 3344433221 222223223223566632212 222211
Q ss_pred ---ccccHHHHHHHHHHHHHHHHHHHHH
Q 040250 345 ---EKVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 345 ---~~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
++...+......+|+++..++.-.+
T Consensus 462 ~y~k~~g~Gtl~s~mlPysi~~l~~w~~ 489 (513)
T TIGR00819 462 KYKKDAGLGTLISLMLPYPAFFLIAWIA 489 (513)
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999877665443
No 77
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=98.56 E-value=0.00021 Score=72.69 Aligned_cols=345 Identities=14% Similarity=0.051 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhhh-hHHHHHHH----H
Q 040250 8 VSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT-RKPRSLLWVVGFVTFFLSSILD-NLTTTIVM----V 81 (395)
Q Consensus 8 ~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~-~~~~~l~~~~~l~~~~lS~~~~-n~~~~~i~----~ 81 (395)
..-..+..++....++.+.+.-.+++...++|.-++...+..+ -.|..++...++.+.++|.... ...+.... .
T Consensus 72 ~~~~~~~~~~~~~alli~~~~g~~~~~w~~~g~v~~~~~~gL~~i~~~~~~~~~f~~t~ivs~~~gts~gt~~t~~~~l~ 151 (485)
T COG1757 72 IILIFLGLLGALTALLILLGIGAAIAAWAASGIVPALVYYGLKLISPSIFFFDDFFITAIVSTATGTSWGTAATSGPALA 151 (485)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 3344455556666677777777788888888888888776654 3666677777777777776663 33333333 4
Q ss_pred HHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccc
Q 040250 82 SLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNR 160 (395)
Q Consensus 82 Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~ 160 (395)
++.+..+.|.+ ++.-.+..++..|.-+.|+.|.+|+ .....+..+.|-+.+++...+...++....+.++ .....
T Consensus 152 ~I~~~~gap~~---l~agai~~GAyfgd~ispisdTt~~-aa~~~~~~~~~~i~~~~y~~~~~~iv~~i~~~~lg~~~~~ 227 (485)
T COG1757 152 GIGDSTGAPLA---LTAGAILSGAYFGDKISPLSDTTIL-AAGTQGVDLVDHIKSNFYTTIPAFILALIVYFFLGFGSML 227 (485)
T ss_pred HHHHhcCCCHH---HHHHHHHHHHHHHhhhhHhHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44455554533 2344688889999999999999985 4445566777777666665555555554444443 11111
Q ss_pred cccC----CcccccccccCCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHH----HHHHHHHHHHHhh-----hccchh
Q 040250 161 KGQE----SSNVLASEQMAPRGQLVSTVGTGALIFVPVFKALTGLPPYMGIL----LGLGVLWILTDAI-----HYGESE 227 (395)
Q Consensus 161 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~----~~~~~l~l~~~~~-----~~~~~~ 227 (395)
+.+. .++.++..+. ........+....+++.+ ...|.+..-+.. .+...-.+.+... ....++
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~i~~i~llp~~~v~~~---~~~g~~~~~~l~~~~~~~~~i~l~~g~~~~~~~~~~~~~g 303 (485)
T COG1757 228 KAENRARTVEGLESILKV-SFLINPILLLPYVTVLVL---ALTGVPAFPVLLAGINTAVIISLLYGGFSFLDAINALYLG 303 (485)
T ss_pred chhhhhhhHhhcchHHhh-hhhHHHHHHHHHHHHHHH---HHhCCchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHhc
Confidence 1110 0000000000 000001111111111111 123444321111 1111111111100 000001
Q ss_pred hccCCHHHHhcccCc------hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch---hHHHHHHHHHHHHh--cCHH
Q 040250 228 RQKLKVPQALSRINM------QVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI---DLIASAIGVVSAVI--DNVP 296 (395)
Q Consensus 228 ~~~~~~~~~~~~v~w------~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~---~~~~~~~~~lS~~i--~N~p 296 (395)
. ..+.+|..+-.+- .++........+++.+++.|..+++.+.+.+...+. +...++++.+.++. +|..
T Consensus 304 ~-~~~~~~~~~~l~~G~~sM~~~i~ilila~siggi~~~~G~~~~l~~~~~~~i~s~~~l~~~~~l~~~~~~~~tg~~~~ 382 (485)
T COG1757 304 F-TTSVEEVLKLLNRGIKSMLGAILILILAWSIGGILEDLGTLEYLLSLLQKFIKSKGSLPLIIFLLAILVAFATGTSWG 382 (485)
T ss_pred c-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhccee
Confidence 1 1233333332221 155555666677999999999999999999987654 23334444444443 4454
Q ss_pred HHHHHhhhhcc--cCCCCChh-HHHHHHHHHhhccccccccchhhHHHhccc-cccHHHHHHHHHHHHH
Q 040250 297 LVAATIGMYDL--TSLPQDSE-FWQLIAYCASTGGSMLIIGSAAGVAFMGME-KVDFFWYFRKVSGFAF 361 (395)
Q Consensus 297 ~~~~~~pi~~~--~~~~~~~~-~~~~l~~~~~~gg~~tpigs~an~i~~~~~-~~~~~~~~k~g~p~~l 361 (395)
...++.|+... .+.+.+.. ....+--+++++.-+.|+++..-......+ .....||++|.+...+
T Consensus 383 si~i~gpia~~i~~~~~~~~~~l~~~l~~gg~~~~~~~Pws~~~i~~s~~~~~~v~~~t~lPya~~~~~ 451 (485)
T COG1757 383 SIIIMGPIAKEIADKLGLHSKRLSRALEAGGTFGDHLSPWSDTTILSSTGLGCIVHVTTQLPYAFYAAL 451 (485)
T ss_pred eeeeeHHHHHHHHHHhCccHHHHHHHHHhcCeecCCCCCcchhHHHHHhccCCCchhHhhHHHHHHHHH
Confidence 55556688753 33444332 223333445556668999655544443333 4788888888777663
No 78
>COG1288 Predicted membrane protein [Function unknown]
Probab=98.56 E-value=1.1e-05 Score=78.37 Aligned_cols=324 Identities=12% Similarity=0.085 Sum_probs=153.1
Q ss_pred HHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhh--hh--HHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Q 040250 31 IVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSIL--DN--LTTTIVMVSLVRKLVPPSEYRKLLGAVVVI 103 (395)
Q Consensus 31 i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~--~n--~~~~~i~~Pi~~~l~~~~~~~~~l~~~i~~ 103 (395)
....++|||-+|.-...+. |||...++..++..-.+..+.. .+ .+-..+++|+..+++-|+- ...++.+
T Consensus 109 ~~GIvnkTGaid~Gi~ali~k~kG~e~llI~~l~ilFslgGt~~Gm~EEaiaFypIliPv~ialGyDsi----~~va~i~ 184 (481)
T COG1288 109 AFGIVNKTGAIDAGIAALIRKTKGKEFLLIPVLFILFSLGGTVFGMGEEAIAFYPILIPLMVALGYDSI----TGVAIIY 184 (481)
T ss_pred eeeeeeccchHHHHHHHHhhhcCCCeEEEeeHHHHHHHhccccccchHHHHHHHHHHHHHHHHhCCchH----HHHHHHH
Confidence 3467899999998888776 3565555555554444444443 22 2333477899988865532 2344444
Q ss_pred Hhhhccccccccccchhhhhc-cCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-h---hccccc---cCCcc------c-
Q 040250 104 AANAGGVWSPIGDVTTTMLWI-HGQISTLPTMKSLFIPSAVSLAVPLALLSLT-S---EVNRKG---QESSN------V- 168 (395)
Q Consensus 104 ~an~gg~~tpiG~~~n~i~~~-~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~---~~~~~~---~~~~~------~- 168 (395)
.+...|.++-+=||-...+++ .+++++.|=+.......++..+......+++ | +++++. ++.++ .
T Consensus 185 lgt~iG~~~St~NPF~~~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~ 264 (481)
T COG1288 185 IGTQIGFAASTMNPFATVIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVE 264 (481)
T ss_pred HHhccchhhhhcCchHHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhc
Confidence 444444555555777666544 5677775532222222233333333333332 3 222211 00000 0
Q ss_pred -ccccccCCchhHHHHHHHhHH-HHHHHhhhhcCC-ChHHHH-HHHHHHHH-HHHHhhhccchhhccCCHHHHhcccCch
Q 040250 169 -LASEQMAPRGQLVSTVGTGAL-IFVPVFKALTGL-PPYMGI-LLGLGVLW-ILTDAIHYGESERQKLKVPQALSRINMQ 243 (395)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i-~~~~~a-~~~~~~l~-l~~~~~~~~~~~~~~~~~~~~~~~v~w~ 243 (395)
+++.+.+.|+|.+..++.+.. ++.|-. ...|+ -++..+ .++.+++. ++. .++.+|..+.+.=+
T Consensus 265 ~~~~~~Ft~~~klvL~lf~l~f~~mI~GV-~~~GW~f~eiA~~Fl~mgIiig~I~-----------glse~~~~~sF~~G 332 (481)
T COG1288 265 DSGERPFTFRDKLVLLLFTLTFVIMIWGV-IVLGWWFPEIAAQFLAMGIIIGLIG-----------GLSENDIASSFIEG 332 (481)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHh-hhhceehHHHHHHHHHHHHHHHHHh-----------ccchhHHHHHHHHh
Confidence 112234456666654443322 222221 12233 233222 22333322 221 24445555544333
Q ss_pred HHHHHHHHHHHH--HH----HHHhCHHHHHHHHHHhhcCchh------HHHHHHHHHHHHh-cCHHHHHHHhhhhcc--c
Q 040250 244 VPLFFLGILLSV--SS----LEAAGLMRKIGNYLDAHIPNID------LIASAIGVVSAVI-DNVPLVAATIGMYDL--T 308 (395)
Q Consensus 244 ~l~~~~g~~~l~--~~----l~~tG~~~~la~~l~~~~~~~~------~~~~~~~~lS~~i-~N~p~~~~~~pi~~~--~ 308 (395)
.==++.+.++++ ++ +++.=+.|.+-+...+.+++.+ .++++-.+++-++ |...-+.+.+|+... .
T Consensus 333 a~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~lsgls~~~f~i~mli~~~~l~f~VpS~SG~A~ltMPImAPLaD 412 (481)
T COG1288 333 ASDLLGVALIIGLARGINLIMDDGMILDTILNYLASLLSGLSSAVFAIGMLIFQALLNFFVPSGSGLAVLTMPIMAPLAD 412 (481)
T ss_pred HHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHheEEEeCCCchhHhhchhhhhhHH
Confidence 333334444333 32 2444455666666665554322 2334444444443 333344455677642 2
Q ss_pred CCCCChh-HHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 309 SLPQDSE-FWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAY 371 (395)
Q Consensus 309 ~~~~~~~-~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~ 371 (395)
-.|.+.. ...+.-++..+-...+|.+ ..-+...+..++++..|+|+..|+..+..+++.+++
T Consensus 413 ~vgv~RqvvV~Afq~g~G~~n~I~PTS-g~~ma~La~~~i~y~~W~Kfv~pl~~i~~li~~~~l 475 (481)
T COG1288 413 LVGVPRQVVVLAFQLGDGFSNIIAPTS-GLLMATLAMARVPYGTWLKFVAPLLGILFLISSVVL 475 (481)
T ss_pred hcCCCHHHhhhhhhhcchhhheecCch-HHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 2233211 1223333333322345541 111112245799999999999999998888877644
No 79
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=98.53 E-value=0.00072 Score=69.23 Aligned_cols=128 Identities=13% Similarity=0.004 Sum_probs=77.9
Q ss_pred HHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch-h----HHHHHHHHHHHHhcCHHHHHHHhhhhcc
Q 040250 233 VPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI-D----LIASAIGVVSAVIDNVPLVAATIGMYDL 307 (395)
Q Consensus 233 ~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~-~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~ 307 (395)
+++..|+. |...+-....+.++..+.++|+.+.+++.+.+ .+.. + .+.++.+++|. ||+..-+++-++-..
T Consensus 378 ~~~t~~~~-~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~yp~~aP~lG~lG~FiTG--S~T~SN~lF~~lQ~~ 453 (522)
T PF02652_consen 378 LKKTLKQL-WPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAAYPFFAPFLGWLGSFITG--SNTSSNALFGPLQVT 453 (522)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCccHHHHHHHHHHHhccccc--chHHHHHHHHHHHHH
Confidence 34555555 77888888999999999999999999999999 6543 2 23333333331 555555555555432
Q ss_pred --cCCCCChhHHHHHHHHHhhccccccccchhhHHHhc-c-c-cccHHHHHHHHHHHHHHHHHHH
Q 040250 308 --TSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMG-M-E-KVDFFWYFRKVSGFAFAGYAAG 367 (395)
Q Consensus 308 --~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~-~-~-~~~~~~~~k~g~p~~lv~~~~~ 367 (395)
++.|.++. + +.-+-+.||..--+-+|+|+.... . + .-+=+|.+|..+|.+++..++.
T Consensus 454 ~A~~lgl~~~-l--~~Aaq~~Gg~~g~mIsp~~i~~a~a~~g~~g~Eg~ilr~t~~~~l~~~~i~ 515 (522)
T PF02652_consen 454 TAQQLGLPPL-L--IAAAQNVGGAMGNMISPQNIVAAAAAVGLSGKEGEILRKTLPPSLIYALIV 515 (522)
T ss_pred HHHHcCCCHH-H--HHHHHHHHHHHHhccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45555432 2 122234554443333678876542 2 1 2223788888888887665443
No 80
>COG2056 Predicted permease [General function prediction only]
Probab=98.52 E-value=0.00014 Score=69.00 Aligned_cols=347 Identities=12% Similarity=0.129 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc---C-----CchhHHHHHHHHHHHHHHhhhhHH
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT---R-----KPRSLLWVVGFVTFFLSSILDNLT 75 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~---~-----~~~~l~~~~~l~~~~lS~~~~n~~ 75 (395)
-+|+.+.+.+++.+..++-+==+-.-.++.+..|||+.|.+++++.+ + +....=+.+.+.-.++|.+..|..
T Consensus 40 l~eti~~f~~GlgG~a~vALSYalLGafAvaIsksGltd~l~~kvi~~i~~~~~~~~~~~~K~~l~~~i~~~a~~SQNli 119 (444)
T COG2056 40 LTETINAFISGLGGNANVALSYALLGAFAVAISKSGLTDVLAKKVIRLLGGDESRRGKTLKKYLLLLIILLIACFSQNLI 119 (444)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHhcCCcc
Confidence 46777777777777766433323333467789999999999998852 1 111223344455566777777774
Q ss_pred HH-H----HHHHH-HHHhCCCChhhHHHHHHHHHHhhhcccccccccc---chhhhhc----cCCCChHHHHHHhHHHHH
Q 040250 76 TT-I----VMVSL-VRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDV---TTTMLWI----HGQISTLPTMKSLFIPSA 142 (395)
Q Consensus 76 ~~-~----i~~Pi-~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~---~n~i~~~----~~~isf~~~~~~~~p~~~ 142 (395)
-+ . +++|- .+-+.+-+-.||+......++-..-=+..|.|=. ++++..+ ..+++..+-...++.|.+
T Consensus 120 PVHIAFIPilIPPLL~lfn~LkiDRR~vAc~ltFGL~apYi~LPvGFG~IF~~ii~~n~~~a~~~~~~~~V~~am~ip~l 199 (444)
T COG2056 120 PVHIAFIPILIPPLLSLFNKLKIDRRLVACVLTFGLTAPYILLPVGFGLIFQSIILDNINAAGVSLSVNQVPKAMWIPGL 199 (444)
T ss_pred ceeeeeehhhhhHHHHHHHHhhhhHHHHHHHhhcccccceeEecchHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHH
Confidence 33 2 33332 3222221122344334444444444455677743 2333322 234566665556777776
Q ss_pred HHHHH-HHHHHH-hhhhccccccCC---cccccccccCCchhHHHHHHHhHHHHHHHhhh--hc-CCChHHHHHHHHHHH
Q 040250 143 VSLAV-PLALLS-LTSEVNRKGQES---SNVLASEQMAPRGQLVSTVGTGALIFVPVFKA--LT-GLPPYMGILLGLGVL 214 (395)
Q Consensus 143 v~~~~-~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~i~~~~~a~~~~~~l 214 (395)
-+.+- ...++. |+||++-+.++. ++.+|+.+-..+++.+. .++.++.....+- .. ..+ ..++.|..++
T Consensus 200 gMi~GLl~ai~~~YrKpReY~~~~~~~~~~~~~~~~~~~~~~~~~--alvaiv~af~vQl~~~~~smi--lgal~gliv~ 275 (444)
T COG2056 200 GMIVGLLLAIFVSYRKPREYQTNEIEEAENAIEDYAALEEYKLAL--ALVAIVVAFAVQLLTFTDSMI--LGALAGLIVF 275 (444)
T ss_pred HHHHHHHHHHHHhhcCCccccccccchhhhhhhhhcchhhHHHHH--HHHHHHHHHHHHHHhccccch--HHHHHHHHHH
Confidence 44322 222222 444432111111 11111111111123322 2222221222222 11 222 3456666555
Q ss_pred HHHHHhhhccchhhccCCHHHHhcccCc--hH------HHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HH
Q 040250 215 WILTDAIHYGESERQKLKVPQALSRINM--QV------PLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LI 281 (395)
Q Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~v~w--~~------l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~ 281 (395)
++.+. .+|||.-+-++= .. +++.+..| ++.+++||-.+.+.+...+..++.. .+
T Consensus 276 ~~~gv-----------~~~ke~d~~~~~G~kmMa~IgFVMl~AaGf--a~Vi~~TG~V~~LV~s~~~~~g~sK~l~a~lM 342 (444)
T COG2056 276 FLSGV-----------IKWKETDDVFTEGVKMMAFIGFVMLVAAGF--AEVINATGAVEELVESSSSIIGQSKLLAALLM 342 (444)
T ss_pred HHhcc-----------eehhhhHHHHHhhHHHHHHHHHHHHHHhHH--HHHHHhccCHHHHHHHHHHHhcccHHHHHHHH
Confidence 55442 233333222221 22 33334444 5668999999999999998774432 22
Q ss_pred HHHHHHHHHH----hcCHHHHH-HHhhhhcccCCCCChhHHHHHHHHHhhccccccccch-----hhHHHhccc----cc
Q 040250 282 ASAIGVVSAV----IDNVPLVA-ATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSA-----AGVAFMGME----KV 347 (395)
Q Consensus 282 ~~~~~~lS~~----i~N~p~~~-~~~pi~~~~~~~~~~~~~~~l~~~~~~gg~~tpigs~-----an~i~~~~~----~~ 347 (395)
.++.-+.|.= .+.+|..+ +..|.....++++ ......+..++.+|-...|-+.+ +++=+-++. +-
T Consensus 343 lvvGLlITMGIGsSF~TIPIIA~iyVPLc~~lGFSp-~ati~liG~AaALGDAGSPASDSTLGPTsGLNaDGQHdHIwDT 421 (444)
T COG2056 343 LVVGLLITMGIGSSFGTIPIIAAIYVPLCLKLGFSP-LATIALIGTAAALGDAGSPASDSTLGPTSGLNADGQHDHIWDT 421 (444)
T ss_pred HHHHHHHhccccccccchHHHHHHHHhHHHHhCCCH-HHHHHHHHHHHHhcCCCCCcccCCCCCccCCCCCCCccchhhc
Confidence 2333333321 23456554 3467765444432 12233345555666665555432 222222221 12
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 040250 348 DFFWYFRKVSGFAFAGYAAGI 368 (395)
Q Consensus 348 ~~~~~~k~g~p~~lv~~~~~~ 368 (395)
-.-.|+.|.+|..+..++.+.
T Consensus 422 cVPTFihYNiPLlifG~IaAm 442 (444)
T COG2056 422 CVPTFIHYNIPLLIFGWIAAM 442 (444)
T ss_pred cccceeecCchHHHHHHHHHH
Confidence 235677888998888777654
No 81
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=98.51 E-value=0.00024 Score=68.75 Aligned_cols=286 Identities=16% Similarity=0.132 Sum_probs=142.6
Q ss_pred cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHh-C-CCChhhHHH-HHHHHHHhhhccccccccccchhhhhcc
Q 040250 50 TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLV-RKL-V-PPSEYRKLL-GAVVVIAANAGGVWSPIGDVTTTMLWIH 125 (395)
Q Consensus 50 ~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~-~~l-~-~~~~~~~~l-~~~i~~~an~gg~~tpiG~~~n~i~~~~ 125 (395)
++++....+.++.+.=+++++++.-++.-+-.=+. +++ . ++++.-|.. +-...+--++||..|....||-++++..
T Consensus 132 ~~s~~a~~~~~L~~~PLlGSfITEpaAMTlaAllL~~~~f~~~~s~~lkYaTLGvLFvNISIGGtLT~fAAPPVLMVA~~ 211 (438)
T PF07399_consen 132 KPSPVAWWWLILTLVPLLGSFITEPAAMTLAALLLRDQFFRLGPSPRLKYATLGVLFVNISIGGTLTSFAAPPVLMVAST 211 (438)
T ss_pred CCCchhHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHheEeeecccccccccCcceeEecc
Confidence 56788888888888889999998776544333233 444 2 222221221 2234456678999999999999888665
Q ss_pred CCCChH----HHHHHhHHHHHHHHHHHHHHHHhhhhccccccCCcccccccccCCc-hhHHHHHHHhHHHHHHHhhhhcC
Q 040250 126 GQISTL----PTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQMAPR-GQLVSTVGTGALIFVPVFKALTG 200 (395)
Q Consensus 126 ~~isf~----~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 200 (395)
-+.+.. .|=.+.....+++..++.+++ |++-.+.++.++ + .++.+++ ...+..+-+..+..+. + . |
T Consensus 212 w~Wd~~fM~~~FGWKAaiai~ina~~~~~~f---Rkel~~l~~~~~-~-~~~~~~~vP~~v~~vHl~f~g~V~-~--a-h 282 (438)
T PF07399_consen 212 WGWDSAFMLTHFGWKAAIAILINATVYTLLF---RKELARLPKTAQ-A-TTSSEERVPWWVILVHLLFVGVVV-F--A-H 282 (438)
T ss_pred cCCChHHHHHHcCHHHHHHHHHHHHHHHHHH---HHHHHhcccccc-c-cccccCCCCHHHHHHHHHHHHHHH-H--h-c
Confidence 444321 111122222223322222222 332111111100 0 0011111 1111111111111111 1 1 2
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhH
Q 040250 201 LPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDL 280 (395)
Q Consensus 201 i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~ 280 (395)
=|. ..+|+..+++.+..-.+.+ -.+++..||.+ =+=||++|+.++ |+ .-+|--+-+....+ ...
T Consensus 283 hp~---iF~G~lfLfFLGf~~ay~~-yQ~~l~Lre~l-----LVgFFLaGLVvl-Gg-----lQ~WWlqpll~~m~-~~~ 346 (438)
T PF07399_consen 283 HPV---IFMGALFLFFLGFTQAYKR-YQSPLILREAL-----LVGFFLAGLVVL-GG-----LQQWWLQPLLSGMS-PLA 346 (438)
T ss_pred ChH---HHHHHHHHHHHHHHHHHHh-hccchhhhHHH-----HHHHHHhhHHHc-Cc-----hHHHHHHHHHhcCC-hhH
Confidence 222 3455444545543210000 00123334332 122344444333 33 44444444443332 335
Q ss_pred HHHHHHHHHHHhcCHHHHHHHhhhhcccCCCCChhHHHHHHHHHhhccccccccchhhHHHhcc-------ccccHHHHH
Q 040250 281 IASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGM-------EKVDFFWYF 353 (395)
Q Consensus 281 ~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~-------~~~~~~~~~ 353 (395)
+++.+..+|+|.||...+-+- ..+ . +.+...-.++.-|+..||-+|.|++++|....+. +.++...-+
T Consensus 347 lf~ga~~LTa~tDNAalTYLg-slv--~--g~sd~~kYalVAGAVtGGGLTVIANAPNpaG~aiLr~~F~d~~Is~~~L~ 421 (438)
T PF07399_consen 347 LFFGATALTAFTDNAALTYLG-SLV--P--GLSDAFKYALVAGAVTGGGLTVIANAPNPAGQAILRKHFPDGSISPLGLF 421 (438)
T ss_pred HHHHHHHHHHHhhhHHHHHHH-Hhc--c--CCCHHHHHHHHhheeccCceeEeccCCChhhHHHHhccCCCCCcChHHHH
Confidence 678889999999998766321 111 1 1223334667778888999999999999887764 247777777
Q ss_pred HHHHHHHHHHHH
Q 040250 354 RKVSGFAFAGYA 365 (395)
Q Consensus 354 k~g~p~~lv~~~ 365 (395)
...++.+++...
T Consensus 422 l~AL~PT~ia~~ 433 (438)
T PF07399_consen 422 LAALPPTLIAAL 433 (438)
T ss_pred HHHHhHHHHHHH
Confidence 788888876543
No 82
>TIGR00784 citMHS citrate transporter, CitMHS family. This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis.
Probab=98.49 E-value=6.3e-06 Score=82.87 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCCh
Q 040250 242 MQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDS 314 (395)
Q Consensus 242 w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~ 314 (395)
+++..++.-...+++.++++|..|++++.+.+..++.. .....+.+++.+.+|.....++.|+... .+.+.++
T Consensus 57 ~~~~~~i~~~~~l~~il~~sG~~~~i~~~iv~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~li~~p~~~~l~~~lgi~~ 136 (431)
T TIGR00784 57 APTAAMLLFAILYFGIMIDAGLFDPLIEKILSIVKGDPLKIAVGTAVLTMLIALDGDGTTTYMITVSAMLPLYKRLGMNP 136 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCceeHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHcCCCH
Confidence 55566666666679999999999999999999877641 3455677778999998888777787642 3445543
Q ss_pred -hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040250 315 -EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSL 381 (395)
Q Consensus 315 -~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~ 381 (395)
.....+..+++.++ ++|.|.+.|..+-. .+.++.||+++-.|..+..+++...++++..|++.++
T Consensus 137 ~~l~~~i~~~~~~~~-~~P~g~p~~~~a~~-lg~~~~~~~~~~~p~~i~~li~~~~~~~~~~r~~~~~ 202 (431)
T TIGR00784 137 MVLAGIAMLGLGIMN-MIPWGGPTTRAISV-LGLDPSEFFVPLIPTMLGGILCVIAVAYLLGKKERKR 202 (431)
T ss_pred HHHHHHHHHHhhhhc-ceeCCchHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455666677777 89999999966543 5899999999999999999988888888888766544
No 83
>TIGR00786 dctM TRAP transporter, DctM subunit. force-dependent uptake of dicarboxylates into R. capsulatus.
Probab=98.43 E-value=1.1e-05 Score=80.51 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=109.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSILDNLTTTIVM 80 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~ 80 (395)
+.++..+.+.|+.+..+.+.+++.+...+...++++|..|.+++.+. +.+++...+.+.++..++..+++|+++..++
T Consensus 244 ~~~~~~~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~~~~~~~~~~li~~~~~ilg~~~~~~a~~~i~ 323 (405)
T TIGR00786 244 TLKSLCDVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANAISSPIVFLIMINILLLIVGMFMDLTPAILIL 323 (405)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCCccHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 35677788888888888899999999999999999999999999996 4567777777788888999999999888888
Q ss_pred HHHHHH----hCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHH
Q 040250 81 VSLVRK----LVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALL 152 (395)
Q Consensus 81 ~Pi~~~----l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~ 152 (395)
.|+... .+-++ . .+.+...+++..|-...|+|.+.+ +..+..+.++.|+.+...|+..+..++..++.
T Consensus 324 ~PI~~p~a~~~Gv~p-~--~~~~~~~~~~~~g~ltPPvg~~~~-~~~~~~~~~~~~~~k~~~p~~~~~~~~~~~~~ 395 (405)
T TIGR00786 324 TPILLPVAVHLGIDP-V--HFGVMFVLNLEIGLLTPPVGTNLF-VASGVAKMSITEVTRALWPFLLAQFLVLLLVT 395 (405)
T ss_pred HHHHHHHHHHcCCCh-H--HHHHHHHHHHHHhcCCCCchHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887644 33332 2 124556677777543345985444 44566789999999998887766555444443
No 84
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=98.41 E-value=1e-05 Score=76.63 Aligned_cols=133 Identities=13% Similarity=0.215 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHH---HHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--C-CCCh
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLV---TDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL--V-PPSE 92 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~l---a~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l--~-~~~~ 92 (395)
.|+++.++....-++.|+.+|-.|++ |+|++||||+++.+.--+++.++.-+...--+..-..|+..+. + .-+|
T Consensus 48 idViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~iT~lAP~Vty~lT~maGTGh~vySilPVI~eVA~~~gIrP 127 (436)
T COG2704 48 IDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKYITILAPFVTYTLTILAGTGHVVYSILPVIAEVAKKNGIRP 127 (436)
T ss_pred hhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCeEEEehhHHHHHHHHhhcCCceeeeehhHHHHHHHHcCCCC
Confidence 47888889999999999999999976 6788999999999888888888887776665666677877544 1 1112
Q ss_pred hhHHHHHHHHHHhhhccccccccccchhhhhccC--CCChHHHHHHhHHHHHHHHHHHHHHHH
Q 040250 93 YRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG--QISTLPTMKSLFIPSAVSLAVPLALLS 153 (395)
Q Consensus 93 ~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~--~isf~~~~~~~~p~~~v~~~~~~~~~~ 153 (395)
.|. +-...+++.++-..+|++...--+.+... +.++.+.+....|-.+++..+..+...
T Consensus 128 eRP--ls~avVsSQ~aItASPISAAVV~~~a~l~~~g~~~l~ll~v~IPaTl~g~~~~~l~~~ 188 (436)
T COG2704 128 ERP--LSAAVVSSQIAITASPISAAVVYMSAVLEPLGISYLTLLMVTIPSTLLGVLLMALFVW 188 (436)
T ss_pred CCc--chHHHHHhhhhhhcCchHHHHHHHHHHHhhcCcchheeeeEEecHHHHHHHHHHHHHH
Confidence 222 24567788888888999766544444322 344555554455555555444433333
No 85
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=98.38 E-value=0.0025 Score=64.21 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 040250 6 IAVSELSRASAEVSE--IVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSL 83 (395)
Q Consensus 6 ~~~~~~~~~~~~~~~--~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi 83 (395)
.....+.+.+++|.+ .+..++-+|+=.+..||+|+++.+-++..++.|++++.....+.+++|...++.+ ..++.|+
T Consensus 63 gl~~~l~~~v~nF~~F~PLG~Vlv~mlgvgvAE~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasDAg-~Vvl~PL 141 (502)
T PF03806_consen 63 GLRWILTNMVKNFTGFPPLGLVLVMMLGVGVAEKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASDAG-YVVLPPL 141 (502)
T ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHhchHHHHHHHHhccCCcchhhHHHHHHHHHhcccccce-eEeHHhh
Confidence 333444455555543 5677777788889999999999999999998888888888888888888776543 5566676
Q ss_pred HH----HhCCCChhhHHHHHHHHHHhhhcccc
Q 040250 84 VR----KLVPPSEYRKLLGAVVVIAANAGGVW 111 (395)
Q Consensus 84 ~~----~l~~~~~~~~~l~~~i~~~an~gg~~ 111 (395)
.- +.+++ |. ..+..++++..||..
T Consensus 142 ~a~iF~~~GRh-Pl---aGi~~afa~vs~Gfs 169 (502)
T PF03806_consen 142 AAMIFAAVGRH-PL---AGIAAAFAGVSGGFS 169 (502)
T ss_pred HHHHHHHcCCC-hH---HHHHHHHHHHhcccc
Confidence 53 33444 33 356678887777644
No 86
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=98.29 E-value=7e-06 Score=69.23 Aligned_cols=95 Identities=21% Similarity=0.362 Sum_probs=74.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHH
Q 040250 12 SRASAEV-SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILD-NLTTTIVMVSLVRK 86 (395)
Q Consensus 12 ~~~~~~~-~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~-n~~~~~i~~Pi~~~ 86 (395)
+|-.++| ++.++.++|..++++..+++|-.|++++|.. |+|++.+.+.++++++++|++.+ +.++.+++.|+...
T Consensus 46 ~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~~~r~~liP~v~f~~~~~lsa~G~g~~~~~Ai~aPia~~ 125 (149)
T PF07158_consen 46 KEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLVGGRPALIPWVMFLLAAVLSAIGAGSIAAVAIMAPIAMS 125 (149)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCceehHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 3444555 5699999999999999999999999999985 78999999999999999999997 45777788888765
Q ss_pred h----CCCChhhHHHHHHHHHHhhhcc
Q 040250 87 L----VPPSEYRKLLGAVVVIAANAGG 109 (395)
Q Consensus 87 l----~~~~~~~~~l~~~i~~~an~gg 109 (395)
+ +.+ |. ++.+.+..+++.|+
T Consensus 126 lA~~~gi~-p~--l~~~~v~~Ga~aG~ 149 (149)
T PF07158_consen 126 LARRTGIN-PL--LMALIVVCGAQAGG 149 (149)
T ss_pred HHHHhCCC-HH--HHHHHHHhccccCC
Confidence 5 222 22 33445555665553
No 87
>PRK09695 glycolate transporter; Provisional
Probab=98.08 E-value=0.0091 Score=61.69 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHH-HHHHHHHHHHHhhhhHHHHHH
Q 040250 4 TEIAVSELSRASA-EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLW-VVGFVTFFLSSILDNLTTTIV 79 (395)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~-~~~l~~~~lS~~~~n~~~~~i 79 (395)
.+++.....|++- ..+++.+.+++...+.+.++|+|-+|++.+.+.+ +++|...+ +-..++.++=....=-+.+++
T Consensus 62 ~~~~~~a~~~G~~~al~pI~~II~~AI~ly~~~~~sGa~~~I~~~l~~is~D~riQ~LlI~~~Fg~FlEg~aGFGtPvAI 141 (560)
T PRK09695 62 IDMAFAAAGYGFIYGLWPIAWIIVAAVFLYKLTVASGQFDIIRSSVISITDDQRLQVLLIGFSFGALLEGAAGFGAPVAI 141 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 4555566666665 5677999999999999999999999999999863 33333333 222444444444433456778
Q ss_pred HHHHHHHhCCC
Q 040250 80 MVSLVRKLVPP 90 (395)
Q Consensus 80 ~~Pi~~~l~~~ 90 (395)
..|+...++.+
T Consensus 142 ~aplLv~LGF~ 152 (560)
T PRK09695 142 TGALLVGLGFK 152 (560)
T ss_pred HHHHHHHcCCC
Confidence 88888888654
No 88
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional
Probab=98.04 E-value=0.00033 Score=70.59 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=108.7
Q ss_pred ChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhh-hhHH
Q 040250 3 STEIAVSELSRASAEVS----EIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSIL-DNLT 75 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~----~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~-~n~~ 75 (395)
+.+++.+.+++.+++.. +++.++++..+++++++++|+.|.+++.+. +.++..+.+.+.+..++.+... +|.+
T Consensus 291 ~~k~v~~~l~~~~~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~lg~~~~~illv~~il~~l~~~~~GSg~a 370 (455)
T PRK10654 291 NTKKVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSFGSAGIILMLVLVILTMLAAITTGSGNA 370 (455)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHccchHH
Confidence 45677666776655444 799999999999999999999999998885 5577777777778888887776 6777
Q ss_pred HHHHHHHHH----HHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHH
Q 040250 76 TTIVMVSLV----RKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAL 151 (395)
Q Consensus 76 ~~~i~~Pi~----~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~ 151 (395)
+...+.|++ .+++-+ |. .+...+..++++|....|+++..- ..+..++.+..|..+...+|.+++.++....
T Consensus 371 ~~~af~pi~~pia~~lG~~-pv--~~~~~~~~~~~~G~~~sPvs~~ii-~~ag~a~~~~~~ivKrt~ip~ii~~iv~~i~ 446 (455)
T PRK10654 371 PFYAFVELIPKLAHSSGIN-PA--YLTIPMLQASNLGRTISPVSGVVV-AVAGMAKISPFEVVKRTSVPVLVGLLIVIVA 446 (455)
T ss_pred HHHHHHHHHHHHHHHcCCC-HH--HHHHHHHHHHHHhCcCCcchhhHh-hhhcccCCCHHHHHHhhhHHHHHHHHHHHHH
Confidence 777776665 555544 22 246789999999999999965332 3345678999999988778887776665544
Q ss_pred H
Q 040250 152 L 152 (395)
Q Consensus 152 ~ 152 (395)
.
T Consensus 447 ~ 447 (455)
T PRK10654 447 T 447 (455)
T ss_pred H
Confidence 3
No 89
>COG4756 Predicted cation transporter [General function prediction only]
Probab=98.01 E-value=0.00027 Score=64.00 Aligned_cols=79 Identities=24% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHHhcCHHHHHHHh-hhhcccCCCCChhHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHH
Q 040250 286 GVVSAVIDNVPLVAATI-GMYDLTSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGY 364 (395)
Q Consensus 286 ~~lS~~i~N~p~~~~~~-pi~~~~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~ 364 (395)
..+|++.||...++.-+ |-... .+.-...++--++|-++..|+-+|+...|..+++++||.|.|.|+.+...
T Consensus 277 n~~SAv~DNATL~AAevgP~lte-------eqirsalmsLvIsGGmlIPGNiPNIV~AGrLrItm~EWar~gvP~Gia~~ 349 (367)
T COG4756 277 NLLSAVADNATLVAAEVGPELTE-------EQIRSALMSLVISGGMLIPGNIPNIVMAGRLRITMKEWARLGVPVGIAVF 349 (367)
T ss_pred HHHHHHhcchhhHHHHhCcHhhH-------HHHHHHHHHHHHcCCeecCCCCcceeeeeeEEeehhhHHHhcccHHHHHH
Confidence 35788999987765433 44322 22233344555666778889999999998899999999999999998766
Q ss_pred HHHHHHH
Q 040250 365 AAGIAAY 371 (395)
Q Consensus 365 ~~~~~~~ 371 (395)
..-.++.
T Consensus 350 ~a~fi~i 356 (367)
T COG4756 350 IAIFIYI 356 (367)
T ss_pred HHHHhhe
Confidence 5444333
No 90
>PRK10420 L-lactate permease; Provisional
Probab=98.00 E-value=0.028 Score=58.07 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=56.7
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhH-HHHHHHHHHHHHHhhhhHHHHHHH
Q 040250 5 EIAVSELSRAS-AEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSL-LWVVGFVTFFLSSILDNLTTTIVM 80 (395)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l-~~~~~l~~~~lS~~~~n~~~~~i~ 80 (395)
+++.....|++ ...+++.+.+++...+.+.++|+|-+|++.+.+.+ +++|.. +++-..++.++=....=-+.+++.
T Consensus 63 ~~~~~a~~~G~~~~~~pI~~II~~Ai~ly~~~~~tGa~~~I~~~l~~is~D~Rvq~LlI~~~Fg~FlEg~AGFGtpvAI~ 142 (551)
T PRK10420 63 ANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAIT 142 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhccCCCcHHHH
Confidence 44444444444 47788999999999999999999999999999864 233322 222223444443333323556778
Q ss_pred HHHHHHhCCC
Q 040250 81 VSLVRKLVPP 90 (395)
Q Consensus 81 ~Pi~~~l~~~ 90 (395)
.|+...++.+
T Consensus 143 aplLv~LGF~ 152 (551)
T PRK10420 143 AALLVGLGFK 152 (551)
T ss_pred HHHHHHcCCC
Confidence 8888887644
No 91
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.004 Score=58.36 Aligned_cols=317 Identities=13% Similarity=0.140 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCChhhH
Q 040250 17 EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLV-PPSEYRK 95 (395)
Q Consensus 17 ~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l~-~~~~~~~ 95 (395)
..+..+..++..|.+.+.++|.|-.++....+..--|+.-.+.+-..-+++-+=......+.+.=|.+++.+ ++++.
T Consensus 57 st~~lIviv~fim~l~~~me~~G~l~k~~~gll~lfpk~s~~~iPalIGLmPMPgGAliSApmi~p~~~k~~l~pe~k-- 134 (388)
T COG1906 57 STWRLIVIVIFIMGLGYVMEQIGYLEKVEEGLLHLFPKHSLWTIPALIGLMPMPGGALISAPMIEPLAKKFGLNPEKK-- 134 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHhcchhHHHHHHHHHcCcCCCCcceEeeeeccccchhccCCHHHH--
Confidence 456688888999999999999999999998876322233333333222222111111112223335555542 22211
Q ss_pred HHHHHHHHHhhhccccccccccchhhh-hccCCCChHHHHHHhHHHHHHHHHHHHHHHHhhhhccccccCCccccccccc
Q 040250 96 LLGAVVVIAANAGGVWSPIGDVTTTML-WIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNRKGQESSNVLASEQM 174 (395)
Q Consensus 96 ~l~~~i~~~an~gg~~tpiG~~~n~i~-~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (395)
.+. =.+-=-+.-...|. -|..++ +.-.+++..+....++|..+++....++.+ .++.+++.+. +.
T Consensus 135 t~i--NYwfRHiwe~~WPl--yqaVvi~sav~gvs~~~vs~~~fP~~iia~t~G~lff--~~~l~~~~~~--------~r 200 (388)
T COG1906 135 TFI--NYWFRHIWELFWPL--YQAVVITSAVLGVSIREVSVKMFPLTIIALTIGYLFF--NGPLKERLSK--------SR 200 (388)
T ss_pred HHH--HHHHHHHHHHhccc--hHHHHHHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHh--cccchhhhhc--------CC
Confidence 000 00001111122333 233333 334578888888889987776655444332 2333222111 01
Q ss_pred CCchhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc-ccCchHHHHHHHHHH
Q 040250 175 APRGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS-RINMQVPLFFLGILL 253 (395)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~-~v~w~~l~~~~g~~~ 253 (395)
+.|+... .+.-.+.++ ...-..++|.......+.......+. .+..+.+|.+| .+|=..++++...++
T Consensus 201 nl~~~l~-nlyPi~~vl--~lsvll~Ldll~gs~~~~ls~~i~n~--------~r~~~l~e~lkrafnprI~~lliavmv 269 (388)
T COG1906 201 NLRDLLI-NLYPIAIVL--VLSVLLGLDLLYGSFVAFLSISIPNV--------FRIRYLLEVLKRAFNPRIVLLLIAVMV 269 (388)
T ss_pred CHHHHHH-HHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhh--------ccHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 1112111 111111111 11112334432222211111111111 01112455554 355558889999999
Q ss_pred HHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHhcCH--HHHHHHhhhhcc--cCCCCChhHHHHHHHHHhhccc
Q 040250 254 SVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDNV--PLVAATIGMYDL--TSLPQDSEFWQLIAYCASTGGS 329 (395)
Q Consensus 254 l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i~N~--p~~~~~~pi~~~--~~~~~~~~~~~~l~~~~~~gg~ 329 (395)
.-+..|++|+.+..++...... .+..+.....+.+.++..+ +.+.+-.|.... ++. .. .+++++...+|.
T Consensus 270 fk~vIe~SGl~e~~ae~~l~f~-aP~al~l~~~fiiGlaTGI~fayvsiafPlL~pff~g~---~~--lalay~ggy~Gv 343 (388)
T COG1906 270 FKEVIEHSGLVEIFAEIMLSFH-APVALFLLLTFIIGLATGIEFAYVSIAFPLLMPFFTGF---KK--LALAYAGGYMGV 343 (388)
T ss_pred HHHHHHhccHHHHHHHHHhccc-hhhHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHhccc---hH--HHHHHHhhhhhe
Confidence 9999999999997777665543 2222222222444444443 344445666642 221 11 455666655554
Q ss_pred c-ccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHH
Q 040250 330 M-LIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAG 367 (395)
Q Consensus 330 ~-tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~ 367 (395)
+ .|. ..+-.+-..+.+-+..|-.|.-+-...+...++
T Consensus 344 mlSPv-HlClVlsaeyy~~ei~kvyrklllpavlt~~l~ 381 (388)
T COG1906 344 MLSPV-HLCLVLSAEYYKAEIGKVYRKLLLPAVLTFALV 381 (388)
T ss_pred ecchh-hhhhheeHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3 443 333333333456666666655444444443333
No 92
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=97.92 E-value=0.00059 Score=57.65 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=73.2
Q ss_pred CCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHHHHhc-CHHHHHHHhhh
Q 040250 231 LKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVSAVID-NVPLVAATIGM 304 (395)
Q Consensus 231 ~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS~~i~-N~p~~~~~~pi 304 (395)
++.||.++.+||++.+.+.|...+-+..++.|-.|+++++..+..++.. .++++++++|.+-. +.++.+.+.|+
T Consensus 43 ~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~~~r~~liP~v~f~~~~~lsa~G~g~~~~~Ai~aPi 122 (149)
T PF07158_consen 43 MSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLVGGRPALIPWVMFLLAAVLSAIGAGSIAAVAIMAPI 122 (149)
T ss_pred CCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCceehHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 5779999999999999999999999999999999999999999887642 56788888888865 45666777788
Q ss_pred hcc--cCCCCChhHHHHHHHHHhhcc
Q 040250 305 YDL--TSLPQDSEFWQLIAYCASTGG 328 (395)
Q Consensus 305 ~~~--~~~~~~~~~~~~l~~~~~~gg 328 (395)
... .+.+.|+ ..+.+..+.|+
T Consensus 123 a~~lA~~~gi~p---~l~~~~v~~Ga 145 (149)
T PF07158_consen 123 AMSLARRTGINP---LLMALIVVCGA 145 (149)
T ss_pred HHHHHHHhCCCH---HHHHHHHHhcc
Confidence 753 3445543 23344444443
No 93
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=97.92 E-value=0.035 Score=57.17 Aligned_cols=84 Identities=12% Similarity=0.191 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhhhh----HHH
Q 040250 4 TEIAVSELSRASAE-VSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFLSSILDN----LTT 76 (395)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~lS~~~~n----~~~ 76 (395)
.+++.....|+... .+++.+.+++.+.+.+.++|+|-+|++.+++.+ +++|.. ..+++...++|+.. -+.
T Consensus 53 ~~~~~~a~~~G~~~~~~~I~~II~~Ai~ly~~~~~sGa~~~I~~~l~~is~D~rvq---~llI~~~Fg~flEg~aGFGtp 129 (530)
T TIGR00795 53 VIMTSAAFLYGFLYGLWPIAWIIIAAIFLYKLSVKSGAFEIIRSSILSISPDRRIQ---VLLIGFCFGAFLEGAAGFGTP 129 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcHHHH---HHHHHHHHHHHHHHhhccCCc
Confidence 45666677777766 888999999999999999999999999999964 333322 22233444444433 355
Q ss_pred HHHHHHHHHHhCCC
Q 040250 77 TIVMVSLVRKLVPP 90 (395)
Q Consensus 77 ~~i~~Pi~~~l~~~ 90 (395)
+++..|+...++.+
T Consensus 130 vAI~aplLv~LGf~ 143 (530)
T TIGR00795 130 VAITAAILVGLGFK 143 (530)
T ss_pred HHHHHHHHHHcCCC
Confidence 67778888777544
No 94
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.89 E-value=0.0083 Score=56.83 Aligned_cols=328 Identities=12% Similarity=0.039 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHhCCCCh
Q 040250 21 IVFFLLGAMTIVEIVDAHQGFKLVTDNI---TTRKPRSLLWVVGFVTFFLSSILDNLTTTIVM-----VSLVRKLVPPSE 92 (395)
Q Consensus 21 ~i~ll~g~~~i~~~l~~sG~~~~la~~i---~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~-----~Pi~~~l~~~~~ 92 (395)
++.-+=.-..+...+||+|+.|.+-+-+ .|+-+-.+-....++.+++++-..-+++..+- .|+..|.+-+++
T Consensus 66 tLlAIPfF~fMG~vlErsglae~ll~tig~lfg~v~gglA~avi~VgallaatTGvVaAsVvaMGlISlpiMLryGYd~~ 145 (447)
T COG4664 66 TLLAIPFFTFMGLVLERSGLAEDLLETIGQLFGPVRGGLAYAVIIVGALLAATTGVVAASVVAMGLISLPIMLRYGYDRK 145 (447)
T ss_pred eeeeeHHHHHHHHHHHhcchHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhchHHHHHHHhhhhcchHHHHhCCCcc
Confidence 4444444455678899999999988765 35544455666777778887776655544432 477766643322
Q ss_pred hhHHHHHHHHHHhhhccccccccccchhh---hhccCCCChHHHHHHhHHHHHHHHHHHHHHH---Hhhhhcc-ccccCC
Q 040250 93 YRKLLGAVVVIAANAGGVWSPIGDVTTTM---LWIHGQISTLPTMKSLFIPSAVSLAVPLALL---SLTSEVN-RKGQES 165 (395)
Q Consensus 93 ~~~~l~~~i~~~an~gg~~tpiG~~~n~i---~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~---~~~~~~~-~~~~~~ 165 (395)
. . ....+..| ...-+ -||.++ .+.+.|.|-.|.......|.+....++.... .+.||+. .+.+
T Consensus 146 l----A--sGvIaAsG-TLgqi-IPPSlvLIVladqlG~SVgdly~gal~PGl~l~~~y~~yili~a~l~P~~aPaLP-- 215 (447)
T COG4664 146 L----A--SGVIAASG-TLGQI-IPPSLVLIVLADQLGRSVGDLYAGALIPGLMLVGLYALYILIMAILRPKSAPALP-- 215 (447)
T ss_pred c----c--ceeEecCc-eeeee-cCcceeeeeeHHhhCCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCcccCCCCC--
Confidence 1 1 11112221 22222 355444 3667788999987777777775544443332 2334432 1111
Q ss_pred cccccccccCCc---hhHHHHHH-HhHHHHHHHhhhhcCC--ChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc-
Q 040250 166 SNVLASEQMAPR---GQLVSTVG-TGALIFVPVFKALTGL--PPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS- 238 (395)
Q Consensus 166 ~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~i--~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~- 238 (395)
.|.++. .-+++ ++.+...+ -.+++++..-.-.+|+ |.+-.++-+++.+.+... ++++||+...+
T Consensus 216 ~ear~~-~~~~~~l~~~vv~~~iPplvLi~lVLGtIf~GiaTpTE~gA~G~~GA~~LA~~--------~~~l~w~~~~~a 286 (447)
T COG4664 216 LEARTL-GGSGRQLVKRVVQSLIPPLVLIFLVLGTIFFGIATPTEGGAVGAVGALLLALA--------NGRLNWQMVKQA 286 (447)
T ss_pred HHHhhc-cccHHHHHHHHHHHhcchHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHH--------hCcccHHHHHHH
Confidence 110111 10111 12222111 0111111111112343 334445544444444321 24567654332
Q ss_pred -----ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--
Q 040250 239 -----RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVIDNVPLVAATIGMYDL-- 307 (395)
Q Consensus 239 -----~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~-- 307 (395)
++.--+++.+.|.-+.+-.....|-..|.-+++.+..++.. .......++.-|+|-.=.+.+.+|+...
T Consensus 287 ~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~lpgg~igFli~~~~~iF~LgffldffEiafIivPllaPva 366 (447)
T COG4664 287 LDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNLPGGEIGFLIVSNILIFFLGFFLDFFEIAFIIVPLLAPVA 366 (447)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcCCCCceeeehHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 23333455666666666667777888999998888766543 2234444555677777677777788752
Q ss_pred cCCCCChhHHHHHHHHHhhcc-ccccccchhhHHHhc--cccccHHHHHHHHHHHHHHHHHHHH
Q 040250 308 TSLPQDSEFWQLIAYCASTGG-SMLIIGSAAGVAFMG--MEKVDFFWYFRKVSGFAFAGYAAGI 368 (395)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~gg-~~tpigs~an~i~~~--~~~~~~~~~~k~g~p~~lv~~~~~~ 368 (395)
++++.+ ..|+...++.|+-. +++|.=..+-.-.-+ ...+|..|.++-..|+.++..++.+
T Consensus 367 ~~lgID-liwfGVll~~NlQtSFl~PPfgfslfYLrgVAp~~VTt~qIy~G~vPfiliqvl~~~ 429 (447)
T COG4664 367 DKLGID-LIWFGVLLGVNLQTSFLHPPFGFSLFYLRGVAPPSVTTGQIYRGAVPFILIQVLVVI 429 (447)
T ss_pred HHcCCc-HHHHHHHHHHhhhhhccCCCchhhHHHhccCCCCCcchhhhhhccccHHHHHHHHHH
Confidence 556654 57899999999753 455432122111111 2468999999999999887766554
No 95
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.00098 Score=64.61 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.++.-|.+.|+.++-..+.+++.+...++..+.++++-+.+++++. ..+++.++..+.+.-.++.+++|..++.+++.
T Consensus 215 ~~~l~~~l~~a~~~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~~a~ilil~ 294 (379)
T COG1593 215 LKELPKVLLEAVKTTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDLTAAILILT 294 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3566677778888888899999999999999999999999999996 57999999999999999999999999998776
Q ss_pred HH----HHHhCCC-ChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHH
Q 040250 82 SL----VRKLVPP-SEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALL 152 (395)
Q Consensus 82 Pi----~~~l~~~-~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~ 152 (395)
|+ +++.+.| -.+ ..-..+..++|...-|+|..-+ +.+.-++.+.-+..+..+|.....+...+++.
T Consensus 295 Pil~Pi~~~~GIDPvhf----Gvv~v~Nl~IGliTPPvG~~Lf-v~s~V~~~~~~~~~k~i~Pfl~~~~~~L~li~ 365 (379)
T COG1593 295 PILLPIAAALGIDPVHF----GVVFVLNLSIGLITPPVGMVLF-VASAVGKVPIEAVIKAILPFLVALILVLLLIT 365 (379)
T ss_pred HHHHHHHHHhCCCceee----HHHHHHHHHhhCCCCCcchhHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 4666544 334 3446778889988889985443 23345678888888877776554444443333
No 96
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=97.87 E-value=0.00041 Score=68.73 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhhh-hHHHHHHHH
Q 040250 5 EIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFLSSILD-NLTTTIVMV 81 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~lS~~~~-n~~~~~i~~ 81 (395)
+|.-+.+.+.-+.+..++.++++..++...++++|+.|.+++++.+ .+++..++...+...+++.+++ +++....+.
T Consensus 244 ~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~~~~~~~~ll~~~l~~~~lg~~~~s~~a~~~~~~ 323 (388)
T TIGR00771 244 KITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAKESGLGNIFVMWGATIGPFLMALITGSGNAPFIAFN 323 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556666677788999999999999999999999999999964 4677777777777888999994 688777776
Q ss_pred HHH----HHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHH
Q 040250 82 SLV----RKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSL 145 (395)
Q Consensus 82 Pi~----~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~ 145 (395)
|+. .+++.+... +......+.++|....|+|... .+..+..+.+..|..+...||.+++.
T Consensus 324 PIl~pia~~~Gidpv~---~gi~~~i~~~iG~~tpPv~~~l-~v~~gia~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 324 TAIPPHAVELGYTHVN---LGMPMAIAGALGRTASPIAGVV-VVCAGLAMVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred HHHHHHHHHcCCCHHH---HHHHHHHHHHHhCcCCcHHHHH-HHHHhhcCCCHHHHHHHHHHHHHHhc
Confidence 665 555544221 3566778889998889997332 23445668999999999999988653
No 97
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=97.78 E-value=0.001 Score=63.71 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFLSSIL-DNLTTTIVM 80 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i~ 80 (395)
.+|..+.+.++.++..+++.+++....+.+.++|+|..+.+.+++.+ ++++.+....++.+.+++... ++..+..++
T Consensus 146 ~~~~~~~~~~G~~~m~~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~ 225 (303)
T PF03553_consen 146 FSEVDGLLIRGIKSMLPTIIILILAGALGGILEKTGVLDALVNKLLKKIKSPRSLPAVTFLLSIIISFATGSSWGTIAIM 225 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 46677888888888899999999999999999999999999988874 578888888889999998877 566777788
Q ss_pred HHHHHHh----CCCChhhHHHHHHHHHHhhhccccccccccchhhh
Q 040250 81 VSLVRKL----VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTML 122 (395)
Q Consensus 81 ~Pi~~~l----~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~ 122 (395)
.|+.+.+ +.+ +. .+.-.+.-++..|..+.|+++..-...
T Consensus 226 ~pi~~~l~~~~g~~-~~--~~a~ai~~~~~~g~~l~P~s~~~i~~~ 268 (303)
T PF03553_consen 226 GPIFKPLAEKMGIS-PP--LLAGAIESGATFGDPLSPWSDTTILSS 268 (303)
T ss_pred HHHHHHHHHHhccc-HH--HHHHHHHhhhhhcCCCCcchHHHHHHH
Confidence 8887665 222 22 234456778889999999988665443
No 98
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=97.75 E-value=0.0024 Score=63.66 Aligned_cols=144 Identities=15% Similarity=0.246 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.++.-+.+.|+.+.-..+.+.+.+...++..+..+|+-|.+++++. ..+++.+++.+.++-.++.+++|..++..++.
T Consensus 261 ~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~~a~ili~~ 340 (425)
T PRK15060 261 FSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDLTPTVLILT 340 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4566777777778888899999999999999999999999999996 46889999999999999999999999888877
Q ss_pred HHH----HHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHH
Q 040250 82 SLV----RKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAL 151 (395)
Q Consensus 82 Pi~----~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~ 151 (395)
|+. .+++.|+-. +.+.......+|....|+|...- +.....+.+..|-++...|......+...++
T Consensus 341 Pil~Pi~~~~Gidpv~---fgii~~~~~~ig~iTPPvG~~lf-v~~~ia~~~~~~i~~~~~Pf~~~~~~~l~l~ 410 (425)
T PRK15060 341 PVLMPLVKEAGIDPIY---FGVMFIINCSIGLITPPVGNVLN-VISGVAKLKFDDAVRGVFPYVLVLYSLLVLF 410 (425)
T ss_pred HHHHHHHHHcCCChHH---HHHHHHHHHHHhCCCCCccHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 566544321 23445556668877778875433 2334568999999988888766555444333
No 99
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion]
Probab=97.42 E-value=0.0032 Score=64.23 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFLSSIL-DNLTTTIVM 80 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i~ 80 (395)
.++..+...++.+....++.+++...-+...+++.|.++++...+.+ ++.+++...+.+.+.+.+... +|..+..++
T Consensus 308 ~~~~~~~l~~G~~sM~~~i~ilila~siggi~~~~G~~~~l~~~~~~~i~s~~~l~~~~~l~~~~~~~~tg~~~~si~i~ 387 (485)
T COG1757 308 VEEVLKLLNRGIKSMLGAILILILAWSIGGILEDLGTLEYLLSLLQKFIKSKGSLPLIIFLLAILVAFATGTSWGSIIIM 387 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhhcceeeeeee
Confidence 56677777777777788999999999999999999999999999975 455578888888888888777 566778888
Q ss_pred HHHHHHh-CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccC-CCChHHHHHHhHHHH
Q 040250 81 VSLVRKL-VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG-QISTLPTMKSLFIPS 141 (395)
Q Consensus 81 ~Pi~~~l-~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~-~isf~~~~~~~~p~~ 141 (395)
.|+++++ ++....++.+.-.+--++..+..+.|+++..-......+ +.+-.+++-|.+...
T Consensus 388 gpia~~i~~~~~~~~~~l~~~l~~gg~~~~~~~Pws~~~i~~s~~~~~~v~~~t~lPya~~~~ 450 (485)
T COG1757 388 GPIAKEIADKLGLHSKRLSRALEAGGTFGDHLSPWSDTTILSSTGLGCIVHVTTQLPYAFYAA 450 (485)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhcCeecCCCCCcchhHHHHHhccCCCchhHhhHHHHHHHH
Confidence 9999887 221122222334566677888889999877654443332 466777776666544
No 100
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC. A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.
Probab=97.39 E-value=0.019 Score=58.04 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=85.6
Q ss_pred chHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh---HHHHHHHHHHHHhc-CHHHHHHHhhhhc--ccCCCCChh
Q 040250 242 MQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID---LIASAIGVVSAVID-NVPLVAATIGMYD--LTSLPQDSE 315 (395)
Q Consensus 242 w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~---~~~~~~~~lS~~i~-N~p~~~~~~pi~~--~~~~~~~~~ 315 (395)
--.+++++|++ .+....+|..+.+...-.+.++... ..+++++++|-.+. +..+...+-|+.. ..+.|.+++
T Consensus 69 ~i~il~~~G~~--~~~~~~~g~i~~l~~~g~~~i~p~~~~~~~Fl~~~~~s~~~Gss~gt~~~~g~~l~~i~~~~g~~~~ 146 (454)
T TIGR00931 69 AILILALVGIL--IGTWIMGGTVPTLIYYGLSIISPEWFAVSTLLICMIVSSFTGTSWGTVGTIGVAMMGIGTGLGIDLA 146 (454)
T ss_pred HHHHHHHHHHH--HHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33455555655 7888999999888776566554332 34455666665553 3444444333332 133444443
Q ss_pred H-HHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040250 316 F-WQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNS 376 (395)
Q Consensus 316 ~-~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~ 376 (395)
. .-++.-++.+|-+..|+++.+|... ...+.+..|+.|.-+|.++...+++.+.++.+.+
T Consensus 147 ~~agai~sGa~fGD~~sP~Sdtt~l~a-~~~~~~~~~~v~~~~~~~~~a~~i~~v~~~i~g~ 207 (454)
T TIGR00931 147 IAAGAVVCGAYFGDKLSPLSDTTNFAS-GIVGVDLFDHIRHLLYTTVPSFVITAILFLVIGR 207 (454)
T ss_pred HHHHHHHHHHHHcCCCCCCCcHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 2344556667888999988877444 4567999999999999999999988887666663
No 101
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=97.30 E-value=0.25 Score=49.96 Aligned_cols=134 Identities=11% Similarity=-0.022 Sum_probs=76.7
Q ss_pred HHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch-----hHHHHHHHHHHHHhcCHHHHHHHhhhhcc-
Q 040250 234 PQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI-----DLIASAIGVVSAVIDNVPLVAATIGMYDL- 307 (395)
Q Consensus 234 ~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~-----~~~~~~~~~lS~~i~N~p~~~~~~pi~~~- 307 (395)
++..|+. |.-++-+...+.++....++|....+++.+.+. +.. +.+.++..++|. ||+..-+++-|+-..
T Consensus 372 ~~t~k~~-~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~fp~fSp~lGwiG~FltG--S~T~sN~lFg~lQ~~~ 447 (522)
T COG1620 372 KETLKEL-KLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEAFPLFSPFLGWIGVFLTG--SNTSSNLLFGPLQQTT 447 (522)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCCchhHhHHHHHHhhhhcc--cchHHHHHHHHHHHHH
Confidence 3444444 777888889999999999999999999999987 432 245566666542 333333333344322
Q ss_pred -cCCCCChhHHHHHHHHHhhccccccccchhhHHHh-cc-cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 308 -TSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFM-GM-EK-VDFFWYFRKVSGFAFAGYAAGIAAYLAV 374 (395)
Q Consensus 308 -~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~-~~-~~-~~~~~~~k~g~p~~lv~~~~~~~~~~~~ 374 (395)
++.|.++.+..+ +-+.||.+--.=++.|+.+. +. +. =+=+|-+|+.++.++...+..-++-+..
T Consensus 448 A~~iG~s~~l~~A---antvGg~~gkMIspqsIa~acaavg~~gkEg~l~r~tv~~sl~~~~~~~i~~~l~ 515 (522)
T COG1620 448 AEQIGLSPVLLVA---ANTVGGVMGKMISPQSIAAACAAVGLVGKEGDLLRKTVKPSLIYLIIAGVITLLL 515 (522)
T ss_pred HHHcCCCHHHHHH---HHhhhhhhccccCHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554432222 23345544333367776653 22 21 2236666777777666555444444333
No 102
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=97.28 E-value=0.016 Score=57.82 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 040250 5 EIAVSELSRASA-EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSIL-DNLTTTIVM 80 (395)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i~ 80 (395)
++-.+.+.++.. .|.+++.++++.-+++++++..|+.|.+.+... +..+..+...+....++.+... +.+++..-+
T Consensus 299 ~~~~~~ff~GMG~~f~~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~~g~g~~~~~lv~~~i~~l~a~l~GSGnAaffAF 378 (455)
T PRK09804 299 MDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSF 378 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhhhcCchHHHHHH
Confidence 344455555553 456799999999999999999999999999885 4455555556666677776666 455555556
Q ss_pred HHH----HHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHH
Q 040250 81 VSL----VRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAL 151 (395)
Q Consensus 81 ~Pi----~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~ 151 (395)
.|+ +.+++-+.. .+.++.-.++|+|-.++|+.. .-+..++..++|-+|-.+...+|.+++++...+.
T Consensus 379 ~~lvp~iA~~~G~~~~---~l~lpmq~as~lgRt~SPVag-viIavAg~a~vSP~eiVKRTavPml~g~i~~~i~ 449 (455)
T PRK09804 379 ASLIPNIAAGLHVPAV---VMIMPMHFATTLARAVSPITA-VVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIA 449 (455)
T ss_pred HHHhHHHHHHcCCCHH---HHHHHHHHHHhhccccCchhh-HHhhhccccCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 554 455554433 246899999999999999954 4445566789999999999999998877665533
No 103
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=97.27 E-value=0.24 Score=49.18 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 040250 5 EIAVSELSRASAEVSE--IVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVS 82 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~--~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~P 82 (395)
+...+.+-+-+++|.+ -+..+.-.++=.+..|++|+++.+-++..++.||+++.-...+.+++|...+.. +..++.|
T Consensus 73 egl~~ilt~~vknFt~FpPLG~VLv~mLGigvAE~SGll~alm~~~~~~~pk~llt~~vvfigi~s~~asDa-ayVVlpP 151 (516)
T COG2978 73 EGLVWILTNMVKNFTGFPPLGTVLVVMLGIGVAERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSHIASDA-AYVVLPP 151 (516)
T ss_pred chHHHHHHHHHHhhcCCCchHHHHHHHHhhhhhhhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHHHHhhc-ceeEecc
Confidence 3344455555555543 556666666777899999999999999999999999998888888888776543 3445556
Q ss_pred HH----HHhCCCChhhHHHHHHHHHHhhhcccc
Q 040250 83 LV----RKLVPPSEYRKLLGAVVVIAANAGGVW 111 (395)
Q Consensus 83 i~----~~l~~~~~~~~~l~~~i~~~an~gg~~ 111 (395)
+. .+++++ |.. .+..++++-.||..
T Consensus 152 laAmiF~a~GRH-PlA---GlaaafAgvsgGfs 180 (516)
T COG2978 152 LAAMIFIALGRH-PLA---GLAAAFAGVSGGFS 180 (516)
T ss_pred hHHHHHHHhCCC-cHH---HHHHHHhhcccccc
Confidence 54 344554 432 45677777777655
No 104
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=97.12 E-value=0.036 Score=56.87 Aligned_cols=260 Identities=16% Similarity=0.146 Sum_probs=138.3
Q ss_pred HHHHHHHHHHH-HHHHHHhcCcHHHHHHHH---h----cCCchhHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhCCC
Q 040250 20 EIVFFLLGAMT-IVEIVDAHQGFKLVTDNI---T----TRKPRSLLWVVGFVTFFLSSILDNL-TTTIVMVSLVRKLVPP 90 (395)
Q Consensus 20 ~~i~ll~g~~~-i~~~l~~sG~~~~la~~i---~----~~~~~~l~~~~~l~~~~lS~~~~n~-~~~~i~~Pi~~~l~~~ 90 (395)
.+-.-++++++ +.+.++|+|..|+.-+.. . ++.++.-...-.+....=.+-..|+ ++-...+|..||.+-+
T Consensus 186 ~Vs~~~IflFilFga~l~~~G~g~~fid~a~a~~G~~~GGpak~aVv~Sgl~G~isGSsvAN~vttG~fTIPlMkR~Gy~ 265 (642)
T COG4666 186 GVSWTFIFLFILFGAFLVKSGAGQFFIDLAFALAGLRRGGPAKVAVVSSGLMGMISGSSVANTVTTGSFTIPLMKRAGYP 265 (642)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCCCcceeeecchhheecchhhhhhhhcceeeHHHHHhcCCC
Confidence 34445555554 457889999999877654 2 2344433333344444333333444 4444668999998644
Q ss_pred ChhhHHHHHHHHHHhhhcccc-ccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccccccCCccc
Q 040250 91 SEYRKLLGAVVVIAANAGGVW-SPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNRKGQESSNV 168 (395)
Q Consensus 91 ~~~~~~l~~~i~~~an~gg~~-tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~ 168 (395)
+.+. -++--++..||-. .|+-+....+.+++.++++.|.....+.|+++.....+....+- ++++-+....++
T Consensus 266 ~~~A----gAvEaaAS~GGQimPPiMGAAAFiMae~~gipY~~ii~aA~iPAllyy~~v~~~V~~eA~k~~~~gl~~~~- 340 (642)
T COG4666 266 PEFA----GAVEAAASTGGQLMPPVMGAAAFIMAEYLGIPYTEIILAAFIPALLYYFGVILMVHLEAKKDGLPGLPREQ- 340 (642)
T ss_pred hhcc----cceehhhhcCCchhhhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhh-
Confidence 3332 3456667777755 46666666667788899999999999999887655444444332 222211111111
Q ss_pred ccccccCC--chhHHHHHHHhHHHHHHHhhhhcCCChHHHHHHHH-HHH--HHHHHhhhccchhhccC---CHHHHhc--
Q 040250 169 LASEQMAP--RGQLVSTVGTGALIFVPVFKALTGLPPYMGILLGL-GVL--WILTDAIHYGESERQKL---KVPQALS-- 238 (395)
Q Consensus 169 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~~-~~l--~l~~~~~~~~~~~~~~~---~~~~~~~-- 238 (395)
.++.++ |++....+=++.++ .... .+.++...+..+. ... .+.. ..+++.+.++. +..|+++
T Consensus 341 --lp~~~~~l~~~~~~llPl~~LI-~~L~---~~~sp~~aa~~s~Il~~~~~~~~--~~~k~~~~g~~~~~~l~~aLe~g 412 (642)
T COG4666 341 --LPPLRPTLKEGWYYLLPLVLLI-WLLG---VGYSPGRAALLSSILITALVLRA--LFRKDTRMGKILARDLLEALESG 412 (642)
T ss_pred --CCchHHHHHhhhHHHHHHHHHH-HHHH---cCcCHHHHHHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHh
Confidence 112211 11111111122221 1111 1245554555442 111 1111 11222111111 1223332
Q ss_pred -ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-HHHHHHHHHHHHh
Q 040250 239 -RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-LIASAIGVVSAVI 292 (395)
Q Consensus 239 -~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-~~~~~~~~lS~~i 292 (395)
+.--++....+..-++++.+.-||+...+++.+....++.. .+.+.+.+.|-+.
T Consensus 413 ar~~i~v~ia~A~aGIIvGvitlTGlg~~~s~~l~~l~~g~l~l~L~lt~~~siiL 468 (642)
T COG4666 413 ARNVIPVAIACATAGIIVGVVTLTGLGLKLSSLLLDLAGGNLLLLLVLTMVISIIL 468 (642)
T ss_pred hHhHHHHHHHHHhhcceeeeEeecCchHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 34446667777777788999999999999999998776554 4455556655544
No 105
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=97.11 E-value=0.024 Score=56.82 Aligned_cols=138 Identities=13% Similarity=0.156 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMV 81 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~ 81 (395)
.++..+.+.|+.+.-..+.+.+.+...+...+..+|+-+.+++++. ..+++.++..+.+...++.+++|..++..+..
T Consensus 261 ~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~~~~~~l~l~~l~~lilG~~m~~~a~~ii~~ 340 (416)
T PF06808_consen 261 WKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSGSPWLVLLLIMLILLILGMFMDTTAAIIIVA 340 (416)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCcchHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4566677788888888899999999999999999999999999996 45667788888899999999999998888776
Q ss_pred HHH----HHhCCCChhhHHHHHHHHHHhhhccccccccccchhhh-hccCCCChHHHHHHhHHHHHHHHH
Q 040250 82 SLV----RKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTML-WIHGQISTLPTMKSLFIPSAVSLA 146 (395)
Q Consensus 82 Pi~----~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~-~~~~~isf~~~~~~~~p~~~v~~~ 146 (395)
|+. .+++.|+-. +.+.+.+.+.+|...-|+|- |.++ .+..+.+..+-++...|...+...
T Consensus 341 pi~~P~~~~~Gidpi~---~g~~~~~~~~ig~iTPPvgl--~lfva~~ia~~~~~~i~~~~~Pf~~~~~~ 405 (416)
T PF06808_consen 341 PILAPIAQALGIDPIH---FGVFMFYNAEIGLITPPVGL--NLFVAAGIAGVPMEKIFRGILPFIFVLLV 405 (416)
T ss_pred HHHHHHHHHhCcchhh---HHHHHHHHHHhcCCCCCccH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 554 556544221 24567888888877777764 3444 445678888888888876655433
No 106
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=97.07 E-value=0.048 Score=55.12 Aligned_cols=161 Identities=10% Similarity=-0.103 Sum_probs=91.6
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC
Q 040250 197 ALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP 276 (395)
Q Consensus 197 ~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~ 276 (395)
...++++.+..++++.+..+....- ..| -.....+.+.+.-|+..+.++....++..+++||..|++++.+.+..+
T Consensus 18 ~~~k~~~~ial~~~a~~~~l~~g~~--~~~--~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g 93 (440)
T TIGR00791 18 MKFKLNTFVALLVVSFGVGLASGMP--LDK--VVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFG 93 (440)
T ss_pred HHHcccHHHHHHHHHHHHHHHcCCC--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 3467787766555555444443210 000 000122333445588888888888889999999999999999999876
Q ss_pred chh---HHHHHHHHHHH--HhcCHHHHHHHhhhhcc--cCCCCChh-HHHHHHHHHhhccccccccchhhHHHhcccccc
Q 040250 277 NID---LIASAIGVVSA--VIDNVPLVAATIGMYDL--TSLPQDSE-FWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVD 348 (395)
Q Consensus 277 ~~~---~~~~~~~~lS~--~i~N~p~~~~~~pi~~~--~~~~~~~~-~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~ 348 (395)
... .+...+.+++. |++- ...++.|+... .+.+.+.. ...+...+....-...|....++ .+.+..+.+
T Consensus 94 ~~r~~~a~~~~~~ilgi~~f~~~--~~vil~Pi~~~l~~~~g~s~~~~a~~~~~~~~~~~~~vPp~Pg~~-~~a~~~g~~ 170 (440)
T TIGR00791 94 KSRVQWAVVIAGLIVGLALFFEV--GFVLLIPLVFSIAAEAKISLLKLGIPMVAALSVAHGFLPPHPGPT-AIANEYGAD 170 (440)
T ss_pred ccchHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhceeCCCCccHH-HHHHHhCCC
Confidence 432 23333333332 1211 13356687742 23333322 11333334344433455544443 444557889
Q ss_pred HHHHHHHHHHHHHHHH
Q 040250 349 FFWYFRKVSGFAFAGY 364 (395)
Q Consensus 349 ~~~~~k~g~p~~lv~~ 364 (395)
..++..+|++.++...
T Consensus 171 ~~~~~~~gl~~~i~~~ 186 (440)
T TIGR00791 171 IGEVLLYGLIVAIPTV 186 (440)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988763
No 107
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=97.03 E-value=0.055 Score=50.59 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=91.1
Q ss_pred HHHhcccCchHHHH-HHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh------HHHHHHHHHHHHhcCHHHHHHHh----
Q 040250 234 PQALSRINMQVPLF-FLGILLSVSSLEAAGLMRKIGNYLDAHIPNID------LIASAIGVVSAVIDNVPLVAATI---- 302 (395)
Q Consensus 234 ~~~~~~v~w~~l~~-~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~------~~~~~~~~lS~~i~N~p~~~~~~---- 302 (395)
++..+.+.|..++= +.+ .++....+.|+-|.+++...+.++... .-++-.++.|.++.|.-.+...+
T Consensus 154 ~Rll~~vG~a~iLPQlLA--aLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF~ViTaGI 231 (308)
T PF06166_consen 154 RRLLDQVGWAAILPQLLA--ALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAFPVITAGI 231 (308)
T ss_pred HHHHHHhhHHHHHHHHHH--HHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHhHHHHhcc
Confidence 45567899987652 222 246777999999999999998875321 24566788899999976554332
Q ss_pred --hhhcccCCCCChhHHHHHHHHHhhcc-ccccccchhhHHHhcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 303 --GMYDLTSLPQDSEFWQLIAYCASTGG-SMLIIGSAAGVAFMGM-EKVDFFWYFRKVSGFAFAGYAAGIAAYLAV 374 (395)
Q Consensus 303 --pi~~~~~~~~~~~~~~~l~~~~~~gg-~~tpigs~an~i~~~~-~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~ 374 (395)
|.+. .++|.||...-++.+-+..+| -+||.++=-|++=.+. |--+-..-.|.=.|.+++.+++=+.+.|++
T Consensus 232 GiPfvi-~~~GgnPaivgAlgM~aGyCGTLmTPMAANFNiVPaALLElkDk~gVIKaQ~p~Al~llvv~I~LMy~l 306 (308)
T PF06166_consen 232 GIPFVI-AQFGGNPAIVGALGMTAGYCGTLMTPMAANFNIVPAALLELKDKYGVIKAQAPTALVLLVVNIVLMYFL 306 (308)
T ss_pred CceEEE-ecCCCCHHHHHHHHHhhcchhcccChhhhhcCcchHHHhcCCccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 3222 345777766666666666444 4699976666665544 223334456777888888888888777765
No 108
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria.
Probab=96.88 E-value=0.067 Score=56.07 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--c-CCchhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--T-RKPRSLLWVVGFVTFFLSSILDNLTTTIVM 80 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~-~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~ 80 (395)
..+..+.+.|+.+....+.+.+.+..++...+..+|+-++++..+. . ++++.++....++..++.++++.+++..++
T Consensus 376 ~~~l~~~l~~~a~~~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~~~~~Lll~~l~~lilGm~l~~~a~~ii~ 455 (613)
T TIGR02123 376 LGEIFGALEDGARNAVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGNLFLLLILTMIACIILGMGLPTTANYIIT 455 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556667777777788899999999999999999999999999986 3 488888889999999999999999888876
Q ss_pred HHH----HHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhh-hccCCCChHHHHHHhHHHHHHHHHHHHHH
Q 040250 81 VSL----VRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTML-WIHGQISTLPTMKSLFIPSAVSLAVPLAL 151 (395)
Q Consensus 81 ~Pi----~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~-~~~~~isf~~~~~~~~p~~~v~~~~~~~~ 151 (395)
.|+ +.+++.|+-. ..+.+.+.+.+|....|+|- |..+ +...+.+..+-.....|......++..++
T Consensus 456 ~pi~~P~l~~lGidpi~---~~~~v~~~~~ig~iTPPvgl--~lfvaa~Ia~~~~~~~~~~~~p~~~~~~~~~~l~ 526 (613)
T TIGR02123 456 ATLAAPALIALGVPPIA---AHMFVFYFGILADITPPVAL--AAFAAAGIAGADPMKTGFEAFKLALAGYLVPFMF 526 (613)
T ss_pred HHHHHHHHHHcCCCHHH---HHHHHHHHHHHHcCCCCchH--HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 5666554221 23456667777766667753 4444 34457788887777887766655444433
No 109
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=96.79 E-value=0.026 Score=57.37 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHHhhhh-HHHH
Q 040250 3 STEIAVSELSRASAEV---SEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR-KPRSLLWVVGFVTFFLSSILDN-LTTT 77 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~---~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~-~~~~l~~~~~l~~~~lS~~~~n-~~~~ 77 (395)
+.+|..+.+.|+.++. ..++.+..+..++.+..+..|..+.......++ ++........+...+++.++++ .+..
T Consensus 306 ~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~~i~~tI~~~~~~~l~~~~~~~~~~~m~~~~~~~~fli~SGsg~a 385 (465)
T PF03606_consen 306 SPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGGKIIDTIVHLLSNLLSGLPGVIAAIGMFLIQFLINFLIGSGSGQA 385 (465)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHeeecCCchHHH
Confidence 3667777777777765 456777777777666665555555555555544 4433344555666777777743 3434
Q ss_pred HH----HHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHH
Q 040250 78 IV----MVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALL 152 (395)
Q Consensus 78 ~i----~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~ 152 (395)
.. +.|+.+.++-++. ...++.-++++++-..+|++... +......++++.+|++...||.++..++.++..
T Consensus 386 ~~~mpim~plad~~Gi~~q---~~vla~q~g~gl~n~isPtsg~~-m~~l~ia~V~~~~w~K~~~~~~~~~~v~~~v~l 460 (465)
T PF03606_consen 386 AAFMPIMPPLADLLGITRQ---TAVLAFQFGDGLGNSISPTSGVL-MAVLGIAKVSYGKWVKRTWPPMLIWFVLSIVFL 460 (465)
T ss_pred HHHHHhHHHHHHHcCCCHH---HHHHHHHHHHHHHhhccchHHHH-HHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 4455565555533 24567889999999999985432 233456799999999999999988776665544
No 110
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised. It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane
Probab=96.64 E-value=0.31 Score=46.45 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HHHHHHHHHHHHh-cCHHHHHHHhhhhcc--cCCCCChh
Q 040250 243 QVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LIASAIGVVSAVI-DNVPLVAATIGMYDL--TSLPQDSE 315 (395)
Q Consensus 243 ~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~~~~~~~lS~~i-~N~p~~~~~~pi~~~--~~~~~~~~ 315 (395)
++++++.-.+.+++.++++|..+.+.+.+.+...+.. ...+.+.+++... +|.....+..|+... .+.+.++.
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~~~~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~~~~g~~~~ 241 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKIKSPRSLPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLAEKMGISPP 241 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccHH
Confidence 3566666677779999999998888888887654432 2333444444333 556666666777753 44455443
Q ss_pred -HHHHHHHHHhhccccccccchhhHH
Q 040250 316 -FWQLIAYCASTGGSMLIIGSAAGVA 340 (395)
Q Consensus 316 -~~~~l~~~~~~gg~~tpigs~an~i 340 (395)
...++.-+++.|..+.|+++..-..
T Consensus 242 ~~a~ai~~~~~~g~~l~P~s~~~i~~ 267 (303)
T PF03553_consen 242 LLAGAIESGATFGDPLSPWSDTTILS 267 (303)
T ss_pred HHHHHHHhhhhhcCCCCcchHHHHHH
Confidence 3344555677888899997654433
No 111
>PRK10472 low affinity gluconate transporter; Provisional
Probab=96.62 E-value=0.2 Score=50.46 Aligned_cols=158 Identities=8% Similarity=0.075 Sum_probs=86.4
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhc----ccC--c-hHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 040250 197 ALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS----RIN--M-QVPLFFLGILLSVSSLEAAGLMRKIGN 269 (395)
Q Consensus 197 ~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~----~v~--w-~~l~~~~g~~~l~~~l~~tG~~~~la~ 269 (395)
...++++....++++.++.+... ++.++..+ +.. + .....+.-...+++.+++||..+.+++
T Consensus 22 ~k~kl~~fialli~Alivgl~~G-----------mp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~ 90 (445)
T PRK10472 22 MKARMHAFVALMVVSMGAGLFSG-----------MPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAV 90 (445)
T ss_pred HHhCccHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 44578887666666655555432 22222221 111 1 122233334445889999999999999
Q ss_pred HHHhhcCchh--HHHHHHHH-HH--HHhcCHHHHHHHhhhhcc--cCCCCC-hhHHHHHHHHHhhccccccccchhhHHH
Q 040250 270 YLDAHIPNID--LIASAIGV-VS--AVIDNVPLVAATIGMYDL--TSLPQD-SEFWQLIAYCASTGGSMLIIGSAAGVAF 341 (395)
Q Consensus 270 ~l~~~~~~~~--~~~~~~~~-lS--~~i~N~p~~~~~~pi~~~--~~~~~~-~~~~~~l~~~~~~gg~~tpigs~an~i~ 341 (395)
.+.+..+... +...++++ .+ -|.| +. ..++.|+... .+.+.+ ..+..+++.+....-.+.|. .++.++
T Consensus 91 ~i~~~fG~kr~~~A~~l~g~iv~iPvF~d-v~-fvil~Pl~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP--~Pgp~a 166 (445)
T PRK10472 91 KMLKSFGHSRAHYAIGLAGLICALPLFFE-VA-IVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP--GPAPML 166 (445)
T ss_pred HHHHHcCcccHHHHHHHHHHHHhhHHHHh-hH-HHHhHHHHHHHHHHHCCChHHHHHHHHHHHHhcccccCC--CcHHHH
Confidence 9999876542 22222222 22 2333 32 2456788753 122222 12223333333333344554 344444
Q ss_pred -hccccccHHHHHHHHHHHHHHHHHH-HHH
Q 040250 342 -MGMEKVDFFWYFRKVSGFAFAGYAA-GIA 369 (395)
Q Consensus 342 -~~~~~~~~~~~~k~g~p~~lv~~~~-~~~ 369 (395)
.+..+.+..+.+-+|+..++...++ +..
T Consensus 167 ~a~~l~adlG~~il~Glivaip~~~i~g~~ 196 (445)
T PRK10472 167 LASQMNADFGWMILIGLCAAIPGMIIAGPL 196 (445)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999988665 443
No 112
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=96.62 E-value=0.9 Score=45.50 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHHHHh
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFLSSI 70 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~lS~~ 70 (395)
++.+..+.-.+++.+...--....-..+....+.++-..+|+-+|+.+ +++++-.....+++.+.|-+
T Consensus 42 ~p~~~v~~Wg~GfW~LL~F~MQM~LilvtG~~lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~i 111 (453)
T PF02667_consen 42 SPLEMVEAWGDGFWSLLAFAMQMALILVTGYALASSPPVKRLLDRLASLPKTPRQAIVLVALVSMIASWI 111 (453)
T ss_pred CHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhcCCCCcceeeHHHHHHHHHHHH
Confidence 355555555555444333333344445667889999999999999974 67777777766666555443
No 113
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=96.61 E-value=0.076 Score=51.29 Aligned_cols=134 Identities=7% Similarity=0.041 Sum_probs=89.2
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HH-HHHHHHHHHHhcCHHHHHHHhhhhcc----cC
Q 040250 239 RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LI-ASAIGVVSAVIDNVPLVAATIGMYDL----TS 309 (395)
Q Consensus 239 ~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~-~~~~~~lS~~i~N~p~~~~~~pi~~~----~~ 309 (395)
+.||++++.+.+...-.++||.+|-.|++-+.-.+.+...+ .+ =+++-++|-+....=++.-++|++.+ .+
T Consensus 41 ~~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~It~lAP~vt~~~T~~~GTgh~a~s~lPVI~eVA~~~~ 120 (364)
T PF03605_consen 41 SPPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKYITFLAPLVTYLFTFLAGTGHVAYSLLPVIAEVAKENG 120 (364)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCcEEEehhHHHHHHHHHhcccHHHHHhhHHHHHHHHHcC
Confidence 48999999999999999999999999998777776553221 11 12333334333222234456799853 45
Q ss_pred CCCChhHHHHHHHHHhhccccccccchhhHHHh--cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 310 LPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFM--GM-EKVDFFWYFRKVSGFAFAGYAAGIAAYLA 373 (395)
Q Consensus 310 ~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~--~~-~~~~~~~~~k~g~p~~lv~~~~~~~~~~~ 373 (395)
..+..|+-. -..++.++=...|+++..-.+.. +. .++++.|.+...+|-+++...++..+-..
T Consensus 121 IRPeRPls~-svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~~iL~V~iPat~ig~~~~a~~~~~ 186 (364)
T PF03605_consen 121 IRPERPLSI-SVVASQIAITASPISAATVAMIAILAPAHGVSLLQILAVTIPATLIGVLVAAFVSSR 186 (364)
T ss_pred CCCCCchHH-HHHHHhcchhcCcHHHHHHHHHHHHccccCCCHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 555444332 35556666667888655433322 33 67999999999999999998888765443
No 114
>PRK09821 putative transporter; Provisional
Probab=96.37 E-value=0.46 Score=47.99 Aligned_cols=125 Identities=13% Similarity=0.007 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHhhcCchh---HHHHHHHHHH--HHhcCHHHHHHHhhhhcc--cCCCCCh-hHHHHH
Q 040250 249 LGILLSVSSLEAAGLMRKIGNYLDAHIPNID---LIASAIGVVS--AVIDNVPLVAATIGMYDL--TSLPQDS-EFWQLI 320 (395)
Q Consensus 249 ~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~---~~~~~~~~lS--~~i~N~p~~~~~~pi~~~--~~~~~~~-~~~~~l 320 (395)
+..-.++..+++||..|.+++.+.+..+... .+.+.+.+++ .|.| + ...++.|+... .+.+.+. .+..++
T Consensus 70 ~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k~~~~ai~i~~~ilgIpvF~d-v-~fvil~Pl~~~l~kk~~~~~~~l~l~~ 147 (454)
T PRK09821 70 GLGAMLGRMIEHSGGAESLANYFTRKLGDKRTIAALTLAAFILGIPVFFD-V-GFIILAPIIYGFAKVAKVSPLKFGLPV 147 (454)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhCCCchHHHHHHHHHHHhhHHHHH-H-HHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3333457888999999999999999876542 3344444443 3443 2 23356788742 2223321 111222
Q ss_pred HHHHhhccc-cccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 321 AYCASTGGS-MLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 321 ~~~~~~gg~-~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
+.+.+.... ..|-..+.|. .+..+.+.....-+|+..++...++++.+.....|+
T Consensus 148 ~~~l~~~h~~vPP~Pgp~~~--a~~Lg~d~g~~~l~Giivaip~~i~g~~~~~~~~~~ 203 (454)
T PRK09821 148 AGIMLTVHVALPPHPGPVAA--AGLLHADIGWLTIIGIAISIPVGIVGYFAAKIINRR 203 (454)
T ss_pred HHHHHHcccccCCChHHHHH--HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 212222222 3444445554 356688999999999999999988877665555553
No 115
>PRK10034 fructuronate transporter; Provisional
Probab=96.22 E-value=0.48 Score=47.79 Aligned_cols=163 Identities=7% Similarity=-0.059 Sum_probs=90.6
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC
Q 040250 197 ALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP 276 (395)
Q Consensus 197 ~~~~i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~ 276 (395)
-..++++....++++.++.+....-. + +-.....+-+.+.-++..+.+.-...+++.+++||..+.+++.+.+..+
T Consensus 21 ~k~k~~~fialli~al~~gl~~Gm~~--~--~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G 96 (447)
T PRK10034 21 LKFKINSMVALLVAALSVGMLAGMDL--M--KLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLG 96 (447)
T ss_pred HHhCccHHHHHHHHHHHHHHHcCCCH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhC
Confidence 34578887665656655544432100 0 0000122233345566666666666689999999999999999999886
Q ss_pred chh---HHHHHHHHH--HHHhcCHHHHHHHhhhhcc--cCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhcccccc
Q 040250 277 NID---LIASAIGVV--SAVIDNVPLVAATIGMYDL--TSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVD 348 (395)
Q Consensus 277 ~~~---~~~~~~~~l--S~~i~N~p~~~~~~pi~~~--~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~ 348 (395)
... .+.+.+.++ +-|.|.. ..++.|+... .+.+.+. ....+++.+....-++-|. +|.-+.+.+..+.+
T Consensus 97 ~kr~~~a~~l~g~llGi~vF~dv~--~v~laPi~~~lak~~~~s~~~~~~~l~~gl~~~h~lvPP-~Pgpla~a~~l~a~ 173 (447)
T PRK10034 97 LRYVQLSVIIIGLIFGLAMFYEVA--FIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPP-QPGPVALVNAYGAD 173 (447)
T ss_pred ccchHHHHHHHHHHHhhHHHHHhH--HHhhHHHHHHHHHHhCcCHHHHHHHHHHHHHHhhcccCC-CCcHHHHHHHhCCc
Confidence 542 122222221 2233322 2345688753 2222221 2223444444444455554 23333344557889
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040250 349 FFWYFRKVSGFAFAGYAA 366 (395)
Q Consensus 349 ~~~~~k~g~p~~lv~~~~ 366 (395)
..+.+-+|++.++...++
T Consensus 174 lG~~il~Gl~v~ip~~~~ 191 (447)
T PRK10034 174 MGMVYIYGVLVTIPSVIC 191 (447)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 999999999888877444
No 116
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=96.18 E-value=0.46 Score=47.88 Aligned_cols=126 Identities=14% Similarity=0.003 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch--hH-HHHHHHHHH--HHhcCHHHHHHHhhhhcc--cCCCCChhHHHH
Q 040250 247 FFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI--DL-IASAIGVVS--AVIDNVPLVAATIGMYDL--TSLPQDSEFWQL 319 (395)
Q Consensus 247 ~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~--~~-~~~~~~~lS--~~i~N~p~~~~~~pi~~~--~~~~~~~~~~~~ 319 (395)
.++-.-+++..+++||..|.+++.+.+..+.. .+ +.+...+++ -|.| +. ..++.|+... .+.+.+ ...+.
T Consensus 64 vI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~~~A~~i~g~iv~IPvF~d-v~-~viL~Pl~~~la~~~~~s-~~~~~ 140 (441)
T PF02447_consen 64 VIALGAMIGKLLEESGAAERIANTLLKKFGEKRAPLALAITGFIVGIPVFFD-VG-FVILAPLAFSLARKTGKS-LLYLA 140 (441)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcccHHHHHHHHHhhhHHHHH-HH-HHHHHHHHHHHHHHhCCC-HHHHH
Confidence 33444445888899999999999999987643 22 333333332 3445 33 3567788753 222222 22333
Q ss_pred HHHHHh--hccccccccchhhHHH-hccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 320 IAYCAS--TGGSMLIIGSAAGVAF-MGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 320 l~~~~~--~gg~~tpigs~an~i~-~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
+.+.+. ..-++.|. .++.++ .+..+.+..+++-+|++.++...+++..++..+.++
T Consensus 141 ~~l~~gl~~~h~lvPP--tPgpla~a~~lg~dlG~~il~Gl~vaip~~~iag~~~~~~~~~ 199 (441)
T PF02447_consen 141 LPLAAGLSVTHALVPP--TPGPLAAAGALGADLGLVILYGLIVAIPAMLIAGPLYGRFISK 199 (441)
T ss_pred HHHHHHHHHhhhccCC--CCcHHHHHHHhCCChhHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 333333 33344554 334343 455789999999999999998887754434433333
No 117
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=96.11 E-value=0.42 Score=47.38 Aligned_cols=137 Identities=12% Similarity=0.155 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHH-HHhhhhHHHHHHHHHH
Q 040250 5 EIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFL-SSILDNLTTTIVMVSL 83 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~l-S~~~~n~~~~~i~~Pi 83 (395)
++..+.++|+++.- .++.+.+.+.+.+.++++|..|.+++.+.+.+-..+.. ..++++++ ++-....++..++.|+
T Consensus 244 ~~~~~~~~~al~~~--illii~agg~fk~vL~~sGi~~~l~~~~~~~~ip~~~l-~~lia~ilg~~tGa~it~agi~~Pl 320 (387)
T TIGR00529 244 RYLLETLKRVFNKW--IFLLLFAVMIYKVVIEHSGVGESIAAEFVSWNLPPWIL-LILLPLVSGISTGITQAYVGISLPL 320 (387)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666676644 78888888999999999999999999987654333333 33333333 3333445666688898
Q ss_pred HHHhCCCChhhHHHHHHHHHHhhhcccc-ccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHH
Q 040250 84 VRKLVPPSEYRKLLGAVVVIAANAGGVW-SPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLA 150 (395)
Q Consensus 84 ~~~l~~~~~~~~~l~~~i~~~an~gg~~-tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~ 150 (395)
........+. ...+++...||.+ +|.=|. =.+..++.|.+..|-.++..+|..+...+.++
T Consensus 321 l~~~~~~~~~-----~~l~la~g~g~~~~Shvnd~-fwl~~eyf~~~~~~~~k~~~~~~~~~~~~~~~ 382 (387)
T TIGR00529 321 LMEFFSSAKY-----AVLTYMFGYGGVILSPVHLC-VVLSAEYFGVEVFKIYRKVLLPLVLTLILGAL 382 (387)
T ss_pred HhhccCchhH-----HHHHHHHHhhhhccCccccc-hhHhHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7422221111 1245555555544 566444 33556678999999888888888776655433
No 118
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=95.91 E-value=2.1 Score=42.77 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHHHHh
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFLSSI 70 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~lS~~ 70 (395)
++++..+.-.+++.+...--.-..-..+-...+..+...+|+-+++.+ ++|++-.....+++.+.|-+
T Consensus 39 ~p~~~v~~wg~GfW~LL~F~MQM~lilvtG~~lA~sp~v~r~l~~la~~p~t~~~ai~~v~~vs~~~s~i 108 (438)
T TIGR00366 39 TPVSLVDMWGNGFWNLLGFGMQMALILVTGYALAYSPIVYKLLKTIASLPKTPKQAVALVTFIGSIACWI 108 (438)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCCCCceeehHHHHHHHHHHH
Confidence 467777777776554444333444445566889999999999999974 68888777777766665543
No 119
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=95.88 E-value=0.66 Score=46.61 Aligned_cols=114 Identities=11% Similarity=-0.074 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHhhcCchh---HHHHHHHHHH--HHhcCHHHHHHHhhhhcc--cCCCCChhHHHHHH
Q 040250 249 LGILLSVSSLEAAGLMRKIGNYLDAHIPNID---LIASAIGVVS--AVIDNVPLVAATIGMYDL--TSLPQDSEFWQLIA 321 (395)
Q Consensus 249 ~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~---~~~~~~~~lS--~~i~N~p~~~~~~pi~~~--~~~~~~~~~~~~l~ 321 (395)
+..-.++..+++||..+.+++.+.+..+... .+...+.+++ -|.|.. ..++.|+... .+.+. +.......
T Consensus 66 ~lGai~G~~l~~SGaA~~IA~~ii~~~G~kr~~~a~~l~~~il~ipvF~dv~--fvil~Pi~~~lak~~~~-~~~~~~~~ 142 (438)
T PRK14984 66 GFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVG--FVLMLPLVFTIAASANI-PLLYVGVP 142 (438)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHhCccchHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHhCc-ChHHHHHH
Confidence 3333448899999999999999998775432 2222222222 232222 1256788753 22222 12222223
Q ss_pred HHH--hhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHH
Q 040250 322 YCA--STGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAA 366 (395)
Q Consensus 322 ~~~--~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~ 366 (395)
+++ +..-.+.| ++|.-..+.+..+.+..+.+-+|++.++...++
T Consensus 143 l~~gl~~th~~vP-P~Pgpla~a~~lgadlG~~il~Glivaip~~~i 188 (438)
T PRK14984 143 MAAALSVTHGFLP-PHPGPTAIATIFNADMGKTLLYGTILAIPTVIL 188 (438)
T ss_pred HHHHHHHHHhCCC-CCCcHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 322 22222333 234434445667899999999999999988554
No 120
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion]
Probab=95.84 E-value=0.12 Score=49.70 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=99.2
Q ss_pred ChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhh-hhHH
Q 040250 3 STEIAVSELSRASAEVS----EIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSIL-DNLT 75 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~----~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~-~n~~ 75 (395)
|.+|+.++.++.+++.. +++.++....+++.+++..|..|.+.+... +.....+.+...+..++..-.. +..+
T Consensus 290 n~k~~~~~l~~ff~GMg~~fanVV~liVAa~vFA~GL~tiGaIdalI~~a~~~g~g~~~vmli~~l~~~L~aIvtGSGnA 369 (451)
T COG3069 290 NLKEVMDDLEAFFDGMGDAFANVVMLIVAAGVFAQGLKTIGAIDALISGATSFGSGGIGLMLILVLLTFLAAIVTGSGNA 369 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHhhHhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhCCCCc
Confidence 57888888888887554 589999999999999999999999988774 4444455555555555444443 2223
Q ss_pred HHHHHH----HHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHH
Q 040250 76 TTIVMV----SLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVP 148 (395)
Q Consensus 76 ~~~i~~----Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~ 148 (395)
...-+. |++..++.++.+ +.++..+++|+|-..+|+....- ..++-.+.|-+|-.+...+|.++.++..
T Consensus 370 pf~AF~~lip~~Aa~lgi~~v~---l~mpm~~As~igRt~SPisgVvv-avaG~a~vSPfe~vKRts~pm~~~lv~v 442 (451)
T COG3069 370 PFIAFVELIPKLAAGLGINPVY---LIMPMLQASALGRTLSPVSGVVV-AVAGMAKVSPFEVVKRTSVPMLVGLVTV 442 (451)
T ss_pred hhhhHHhhcchhhhhcCCChHH---HhhhHHHHHhhccccccccceee-eeccccccChhheeeccCcchhhHHHHH
Confidence 333332 444555544333 57899999999999999976543 3445567888888888888887765443
No 121
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=95.80 E-value=0.54 Score=46.50 Aligned_cols=138 Identities=18% Similarity=0.232 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhh-hHHHHHHHHHH
Q 040250 5 EIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILD-NLTTTIVMVSL 83 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~-n~~~~~i~~Pi 83 (395)
+|..+.+.++++ ...+..+++.+++-+.++++|..|.+++.+.+.. -.....+.+..++...... +.+.+.+..|+
T Consensus 242 ~~~~~~l~~a~~--~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~~~-ip~~li~~lipFivG~~TGi~~a~vgi~fPl 318 (385)
T PF04165_consen 242 KEIKEVLKEALE--PKILLLIIGIMIFKEILEATGVVEELPEFLSSLG-IPPFLIIALIPFIVGLITGITQAFVGIAFPL 318 (385)
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445555443 2489999999999999999999999999887522 2223334444444444444 33455677898
Q ss_pred HHHhCCCChhhHHHHHHHHHHhh-hccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHH
Q 040250 84 VRKLVPPSEYRKLLGAVVVIAAN-AGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAL 151 (395)
Q Consensus 84 ~~~l~~~~~~~~~l~~~i~~~an-~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~ 151 (395)
+..+....++ . ..++.+. .|-+.+|. +---.+..++.+.++.+-.++..+|.++..++..+.
T Consensus 319 l~~l~~~~~~----~-~la~~~g~~GvmlSP~-HlCLvlT~eYFk~~~~~v~k~l~~p~~i~~~~~~~~ 381 (385)
T PF04165_consen 319 LAPLIGGLPY----L-VLAYASGFAGVMLSPV-HLCLVLTAEYFKADLGKVYKKLLPPALIFLAAGLLY 381 (385)
T ss_pred HHHhcccchH----H-HHHHHHHHHHHhhchH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777433222 2 3444444 44444565 555556677889999998888998887655544443
No 122
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=95.44 E-value=0.26 Score=46.67 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH-HhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Q 040250 9 SELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDN-ITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVM-VSLVRK 86 (395)
Q Consensus 9 ~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~-i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~-~Pi~~~ 86 (395)
++..|-+-+...+.+|+++...+.+ .|+.++++ +.+-+++.+.|.= -+|+..||.|.++.- .|-..
T Consensus 219 e~~k~v~iRa~KVylFv~AL~lLG~------gfkPli~~y~~~l~~~~LYw~N-----miSAvlDNATLaAAEIsP~m~- 286 (347)
T PF07854_consen 219 ESLKEVFIRAAKVYLFVMALTLLGE------GFKPLIDKYIIKLPPEILYWVN-----MISAVLDNATLAAAEISPEMS- 286 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHhcCCccceehhh-----HHHHHHhhHHHHHHHhCcccC-
Confidence 3334433444557777777777774 35667766 5565666666543 368889999866531 12111
Q ss_pred hCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHH
Q 040250 87 LVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALL 152 (395)
Q Consensus 87 l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~ 152 (395)
..+- | ++-++--+.|.++--||-||++.++..+++.-+|.+...|..++...+++.+.
T Consensus 287 ---~~qi-~----aiLmgLliSGGMlIPGNIPNIIsAgkL~I~skEWar~gvPlGl~~m~~yfi~~ 344 (347)
T PF07854_consen 287 ---EEQI-R----AILMGLLISGGMLIPGNIPNIISAGKLKITSKEWARLGVPLGLVLMVVYFIIL 344 (347)
T ss_pred ---HHHH-H----HHHHHHHHcCCeecCCCcchhhccccCccchHHHHHHcccHHHHHHHHHHHHh
Confidence 0111 1 22223344566777899999999999999999999988888887776665544
No 123
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=95.42 E-value=0.065 Score=51.95 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHh
Q 040250 9 SELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTT-TIVMVSLVRKL 87 (395)
Q Consensus 9 ~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~-~~i~~Pi~~~l 87 (395)
|.+.+|+++..+--.++.--+.+++...+..+|+.+..+...-++...+..+.+..+++|+..||+-+ +.-+-..-..+
T Consensus 344 H~iGkAFeEaLPFTALL~VFF~vVaVI~dQ~LF~PiI~~VL~~~~~~Ql~~fy~aNGlLS~iSDNVFV~TVYI~E~k~A~ 423 (515)
T PF06450_consen 344 HAIGKAFEEALPFTALLVVFFAVVAVIIDQHLFTPIIQFVLSAEGSSQLAMFYIANGLLSMISDNVFVATVYINEVKAAL 423 (515)
T ss_pred hhhhHhHhhccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHcCCCccchhHHHHhhhhHHhhccceeEEEEeHhhHHHHH
Confidence 77788888888866667777778888889999999999998777778889999999999999999843 22222222222
Q ss_pred --C-C-CChhhHHHHHHHHHHhhhccccccccccchhhhhcc-----CCCChHHHHHHhHHHHHHHHHHHHHHHHhh
Q 040250 88 --V-P-PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIH-----GQISTLPTMKSLFIPSAVSLAVPLALLSLT 155 (395)
Q Consensus 88 --~-~-~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~-----~~isf~~~~~~~~p~~~v~~~~~~~~~~~~ 155 (395)
+ . .+++- .+..++=.++|+-+.+||=|...=+.+-+. -++|+........|..++..++..+...+.
T Consensus 424 ~~G~Is~~qf~-~LAVAINTGTNlPSVATPNGQAAFLFLLTSalAPLirLSYgrMV~MAlPYTiVl~~vGl~~v~~~ 499 (515)
T PF06450_consen 424 DAGVISREQFD-LLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLVGLLAVEFL 499 (515)
T ss_pred HcCCcCHHHHh-hHHhhhhcCCCCCcCcCCCchhHHHHHHHHhhHHHHHHhHhhHHhHhccHHHHHHHHHHHHHHHh
Confidence 2 1 22332 345566677888888888776655444222 267887777677888887776666555443
No 124
>PRK11588 hypothetical protein; Provisional
Probab=95.29 E-value=0.78 Score=46.79 Aligned_cols=145 Identities=6% Similarity=-0.005 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCcHHHHHHHH---hcC-CchhHHHHHHHHHHHHHHhhhh
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIV-----DAHQGFKLVTDNI---TTR-KPRSLLWVVGFVTFFLSSILDN 73 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l-----~~sG~~~~la~~i---~~~-~~~~l~~~~~l~~~~lS~~~~n 73 (395)
+.+|..+.+.|+.++.....+.+...--+...+ ++....|.+.+.. +++ ++......++++..++..++++
T Consensus 338 ~~~~i~~~f~~Ga~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~~lp~~~~ai~m~i~~~~lNffIpS 417 (506)
T PRK11588 338 TVNTMASSFTEGARMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAISGLPDAVSAWFMLLFQSVFNFFVTS 417 (506)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHeEecC
Confidence 478899999999998888766666666777778 4555777776655 344 4455555777888888888864
Q ss_pred H-HHH----HHHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHH
Q 040250 74 L-TTT----IVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVP 148 (395)
Q Consensus 74 ~-~~~----~i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~ 148 (395)
. .=. .+|.|+.+.++.+++. ..++--++.......+|.+.. -+..-...+++|.+|++..+|..++.+++.
T Consensus 418 gSGqAaitmPIm~Plad~lGisrq~---avlAfq~GDg~tNlI~Pts~~-lm~~Laia~Ipy~kW~Kf~~pl~~i~~v~~ 493 (506)
T PRK11588 418 GSGQAALTMPLMAPLADLVGVNRQV---AVLAFQLGDGFTNIIYPTSAS-LMATLGVCRVDFGNWLKFIWRFLLLLFIMS 493 (506)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHH---HHHHHHHHhHHHHHhhhhHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4 222 2566767666655433 234455566666667776321 111124578999999999999776655554
Q ss_pred HHH
Q 040250 149 LAL 151 (395)
Q Consensus 149 ~~~ 151 (395)
...
T Consensus 494 ~v~ 496 (506)
T PRK11588 494 SVV 496 (506)
T ss_pred HHH
Confidence 433
No 125
>PRK09921 permease DsdX; Provisional
Probab=95.16 E-value=1.1 Score=45.37 Aligned_cols=127 Identities=13% Similarity=0.015 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhhc-CchhHHHHHHHHH---HHHhcCHHHHHHHhhhhcc--cCCCCChhHHHHH
Q 040250 247 FFLGILLSVSSLEAAGLMRKIGNYLDAHI-PNIDLIASAIGVV---SAVIDNVPLVAATIGMYDL--TSLPQDSEFWQLI 320 (395)
Q Consensus 247 ~~~g~~~l~~~l~~tG~~~~la~~l~~~~-~~~~~~~~~~~~l---S~~i~N~p~~~~~~pi~~~--~~~~~~~~~~~~l 320 (395)
.++-...++..+++||..+.+++.+.+.- .+......+++++ +.|++.. ..++.|+... .+.+. +....++
T Consensus 69 ii~lGai~G~lle~SGaa~~ia~~i~~~~~~~~~~a~~~~gll~~IpvF~~~~--~vil~Pl~~~lak~~~~-s~~~~~~ 145 (445)
T PRK09921 69 VIGLGTILGKMMEVSGAAERIGLTLQRCRWLSADVIMVLVGLICGITLFVEVG--VVLLIPLAFSIAKKTNT-SLLKLAI 145 (445)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHHHHhhhhHHHHHHHHHHHHcccHHHHhH--HHHHHHHHHHHHHHhCC-CHHHHHH
Confidence 33444445888899999999999985541 1112222333333 3333332 2245688753 22222 2233344
Q ss_pred HHHHhhcc--ccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 040250 321 AYCASTGG--SMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAA-GIAAYLAVNSL 377 (395)
Q Consensus 321 ~~~~~~gg--~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~-~~~~~~~~~~~ 377 (395)
..+.+.+. .+.| ++|.-..+.+..+.+..++.-+|++.+++...+ ++.+.....|+
T Consensus 146 ~~~~~~~~~h~~vP-p~Pg~~~~a~~lg~~lg~~~l~Gl~~~i~~~~i~~~~~~~~~~~~ 204 (445)
T PRK09921 146 PLCTALMAVHCVVP-PHPAALFVANKLGADIGSVIVYGLLVGLMASLVGGPLFLKFLGNR 204 (445)
T ss_pred HHHHHHHHhHhcCC-CCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 43444332 2333 345555556667899999999999999777555 44444444443
No 126
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=94.88 E-value=1.8 Score=44.30 Aligned_cols=140 Identities=9% Similarity=0.038 Sum_probs=94.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh------cCCchhHHHHHHHHHHHHHHhhhhHH-
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT------TRKPRSLLWVVGFVTFFLSSILDNLT- 75 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~------~~~~~~l~~~~~l~~~~lS~~~~n~~- 75 (395)
+.+|..+.+.|+.++.....++++..--+...++++++.|.++.+.. +-+.......+.++.+++..|+++..
T Consensus 330 ~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~~~~~i~~~l~~~~iNlfI~S~Sg 409 (513)
T TIGR00819 330 GEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICAFICLFIASASA 409 (513)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHheeccHHH
Confidence 67899999999999999988888888899999999999999998762 33555677788899999999986553
Q ss_pred HHH----HHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhc----cCCCChHHHHHHhHHHHHHHH
Q 040250 76 TTI----VMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWI----HGQISTLPTMKSLFIPSAVSL 145 (395)
Q Consensus 76 ~~~----i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~----~~~isf~~~~~~~~p~~~v~~ 145 (395)
=.+ ++.|+.+.++-++... ...-=++.......||...---++++. ..+.+..+.+..++|.++..+
T Consensus 410 kwal~aPI~vPm~~~lGisp~~t---~~AyriGDs~tNiItP~~~y~~lil~~~~~y~k~~g~Gtl~s~mlPysi~~l 484 (513)
T TIGR00819 410 IWAILAPIFVPMFMLAGFAPAFA---QAAFRIADSSTLIIAPMMPFFGLFLAFLMKYKKDAGLGTLISLMLPYPAFFL 484 (513)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHH---HHHHHHhchHHHhhccCcchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 223 4556666665553321 222223444444455552111122221 235778888888888776443
No 127
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=94.87 E-value=1.4 Score=44.88 Aligned_cols=140 Identities=9% Similarity=0.044 Sum_probs=98.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh------cCCchhHHHHHHHHHHHHHHhhhhHH-
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT------TRKPRSLLWVVGFVTFFLSSILDNLT- 75 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~------~~~~~~l~~~~~l~~~~lS~~~~n~~- 75 (395)
|++|+.+...|+.++....+++.++.--+.+.++.++..+.++.+.. +=++...+..+.++++++..|+++..
T Consensus 328 s~~Dv~~~m~~g~~~m~~~ivl~F~~Aqfia~F~~snlG~ilav~gA~~L~~~~l~~~pl~i~~ill~a~iNlfI~SgSa 407 (508)
T PRK11339 328 RQADLPHLMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGSA 407 (508)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHccccHHH
Confidence 57899999999999999999999999999999999999999987763 23556666888899999999986553
Q ss_pred HHH----HHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhh--hcc--CCCChHHHHHHhHHHHHHHH
Q 040250 76 TTI----VMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTML--WIH--GQISTLPTMKSLFIPSAVSL 145 (395)
Q Consensus 76 ~~~----i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~--~~~--~~isf~~~~~~~~p~~~v~~ 145 (395)
=-+ ++.|....++-++... -..-=++.+.....||...---+++ ... .+.++..|+..++|.++..+
T Consensus 408 kwai~aPIfVPm~~llGisPe~t---q~AyRiGDs~TNiItPl~~y~~lil~~~~~y~k~~g~Gtlis~mlPysi~~l 482 (508)
T PRK11339 408 IWSILAPIFVPMFMLLGFHPAFA---QILFRIADSSVLPLAPVSPFVPLFLGFLQRYKPDAKLGTYYSLVLPYPLIFL 482 (508)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHH---HHHHHHccchhhhcCCchHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHH
Confidence 333 4455556665553331 1223334555556677633222222 222 37899999999999876543
No 128
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=94.44 E-value=1.8 Score=44.70 Aligned_cols=140 Identities=11% Similarity=0.092 Sum_probs=91.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 040250 2 PSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSIL-DNLTTTIVM 80 (395)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i~ 80 (395)
++.+|..+.+.+..++..+..+-+...+.+++.|+.+|...-+++.+.+ ......+.--++..+-+... +|+..-+++
T Consensus 369 ~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~yp~~aP~lG~lG~FiTGS~T~SN~lF 447 (522)
T PF02652_consen 369 MSPSQVREALKKTLKQLWPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAAYPFFAPFLGWLGSFITGSNTSSNALF 447 (522)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCccHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4678899999999999999999999999999999999999999998876 33333333334433333333 566666777
Q ss_pred HHHHHH----hCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccC-CCC--hHHHHHHhHHHHHHHHHHHH
Q 040250 81 VSLVRK----LVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG-QIS--TLPTMKSLFIPSAVSLAVPL 149 (395)
Q Consensus 81 ~Pi~~~----l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~-~is--f~~~~~~~~p~~~v~~~~~~ 149 (395)
.++=.+ ++-+ +. .+.-....+++.|. ++ .|+|+.++... +.. -.+-+++..|++++..++..
T Consensus 448 ~~lQ~~~A~~lgl~-~~--l~~Aaq~~Gg~~g~---mI-sp~~i~~a~a~~g~~g~Eg~ilr~t~~~~l~~~~i~g 516 (522)
T PF02652_consen 448 GPLQVTTAQQLGLP-PL--LIAAAQNVGGAMGN---MI-SPQNIVAAAAAVGLSGKEGEILRKTLPPSLIYALIVG 516 (522)
T ss_pred HHHHHHHHHHcCCC-HH--HHHHHHHHHHHHHh---cc-CHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 776433 3333 22 22333444444443 44 68898775422 222 26778888888876554443
No 129
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=94.38 E-value=0.44 Score=46.17 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=91.2
Q ss_pred CchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-HHHHHHHHHHHHhc--CH------HHHHHHhhhhcccCCC
Q 040250 241 NMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-LIASAIGVVSAVID--NV------PLVAATIGMYDLTSLP 311 (395)
Q Consensus 241 ~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-~~~~~~~~lS~~i~--N~------p~~~~~~pi~~~~~~~ 311 (395)
|-..+++|+-+| -+.+.++|+.|.+-+.+.+...+.+ -+++.+++++...+ .. -++-+++|+.+. +|
T Consensus 59 ~t~imlmFAILf--FgIM~DsGLFdPli~~il~~~kgdp~kV~igTavla~~v~LDGdGatTflIti~A~LPlYkr--Lg 134 (433)
T COG2851 59 PTAIMLMFAILF--FGIMIDSGLFDPLIRKILSIVKGDPVKVVIGTAVLAAVVSLDGDGATTFLITIPALLPLYKR--LG 134 (433)
T ss_pred HHHHHHHHHHHH--HHHHHhcccchHHHHHHHHHhcCCceeeeHHHHHHHHHhhccCCCceEEEeeHHhHhHHHHH--cC
Confidence 444556666555 7899999999999999999876544 46667777776552 21 134556788764 34
Q ss_pred CChhHHHHHHHHHhhc-cccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040250 312 QDSEFWQLIAYCASTG-GSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSL 381 (395)
Q Consensus 312 ~~~~~~~~l~~~~~~g-g~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~ 381 (395)
.|+ ..+....+...| -|++|.|.|..-.+. ..+.+..|.++.-+|..+++.+..+.+-+.+.+.+-+|
T Consensus 135 mn~-~~l~~l~~ls~gvmN~~PWGGPt~Raas-~Lg~d~~el~~pliP~~i~Gl~~vl~lA~~lG~kErkR 203 (433)
T COG2851 135 MNP-YLLALLATLSAGVMNMLPWGGPTARAAS-VLGVDPAELFVPLIPIQIIGLVLVLALAWLLGKKERKR 203 (433)
T ss_pred CcH-HHHHHHHHHhhhheecCCCCCcHHHHHH-HhCCCHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 443 333333332222 378999988765443 35788999999999999999988887777777665544
No 130
>COG3817 Predicted membrane protein [Function unknown]
Probab=94.35 E-value=0.73 Score=42.13 Aligned_cols=140 Identities=10% Similarity=0.068 Sum_probs=86.1
Q ss_pred HHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh------HHHHHHHHHHHHhcCHHHHHHH------
Q 040250 234 PQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID------LIASAIGVVSAVIDNVPLVAAT------ 301 (395)
Q Consensus 234 ~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~------~~~~~~~~lS~~i~N~p~~~~~------ 301 (395)
++..+.+.|..++--. +-.++.....+|+-|.+++......+... .-++-.+++|.++.|.-.+...
T Consensus 158 ~rl~d~v~wa~iLPQ~-LaaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMalfTmiMGNaFAAFpViTagIg 236 (313)
T COG3817 158 RRLMDQVSWAAILPQM-LAALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMALFTMIMGNAFAAFPVITAGIG 236 (313)
T ss_pred HHHHHHhhHHHHHHHH-HHHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHcccchhceeeecccc
Confidence 3345679998765322 11246667899999999999988765432 2345667888899996544311
Q ss_pred hhhhcccCCCCChhHHHHHHHHHhhcc-ccccccchhhHHHhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 302 IGMYDLTSLPQDSEFWQLIAYCASTGG-SMLIIGSAAGVAFMGMEK-VDFFWYFRKVSGFAFAGYAAGIAAYLAVN 375 (395)
Q Consensus 302 ~pi~~~~~~~~~~~~~~~l~~~~~~gg-~~tpigs~an~i~~~~~~-~~~~~~~k~g~p~~lv~~~~~~~~~~~~~ 375 (395)
+|+.. .++|.||...-++.+-+..+| -+||.++--|++-....+ -+-..-.|.=.|..++.+++-+.+.|++.
T Consensus 237 vPilv-~q~ganPaV~~AigM~sGfCGTLlTPMAANFN~vPAALlel~DknaVIKaQ~ptalvlli~ni~LmyfLa 311 (313)
T COG3817 237 VPILV-GQLGANPAVAGAIGMLSGFCGTLLTPMAANFNIVPAALLELKDKNAVIKAQAPTALVLLIANIFLMYFLA 311 (313)
T ss_pred cceee-eccCCChHHHHHHHHHhhhhhhccChhhhhcCcchHHHhCCccccceeeeccchhhHHHHHHHHHHHHHH
Confidence 23221 355666655555555555444 479997666665544422 22233456667888888777777777664
No 131
>COG4756 Predicted cation transporter [General function prediction only]
Probab=94.25 E-value=0.39 Score=44.02 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh-cCCchhHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHh
Q 040250 10 ELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT-TRKPRSLLWVVGFVTFFLSSILDNLTTTI-VMVSLVRKL 87 (395)
Q Consensus 10 ~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~-~~~~~~l~~~~~l~~~~lS~~~~n~~~~~-i~~Pi~~~l 87 (395)
++.|-+.+...+..+++...++.+ .|+.++.|-. +-.++.+.|. -.+|+..||.+.++ -+.|-....
T Consensus 232 ~l~evi~RavrvfiFiaAL~lLGe------~FtP~~~wy~a~lp~e~lYw~-----n~~SAv~DNATL~AAevgP~ltee 300 (367)
T COG4756 232 ELKEVITRAVRVFIFIAALTLLGE------FFTPLAVWYVAELPREYLYWF-----NLLSAVADNATLVAAEVGPELTEE 300 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHhCCHHHhHHH-----HHHHHHhcchhhHHHHhCcHhhHH
Confidence 344444555567777777777664 4567888754 3344444432 24688889987555 455554322
Q ss_pred CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHh
Q 040250 88 VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSL 154 (395)
Q Consensus 88 ~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~ 154 (395)
+-|.. +++. -+.|.++--||-||++.++..++++.+|.+...|..+..+.....+.+.
T Consensus 301 ----qirsa-lmsL----vIsGGmlIPGNiPNIV~AGrLrItm~EWar~gvP~Gia~~~a~fi~i~v 358 (367)
T COG4756 301 ----QIRSA-LMSL----VISGGMLIPGNIPNIVMAGRLRITMKEWARLGVPVGIAVFIAIFIYILV 358 (367)
T ss_pred ----HHHHH-HHHH----HHcCCeecCCCCcceeeeeeEEeehhhHHHhcccHHHHHHHHHHhheeE
Confidence 11111 2333 3445677779999999988889999999987787777655554444433
No 132
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=94.14 E-value=4.4 Score=40.76 Aligned_cols=123 Identities=12% Similarity=-0.148 Sum_probs=69.0
Q ss_pred HHHHHHHhCHHHHHHHHHHhhcCchh---HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCCh-hHHHHHHHHHhhc
Q 040250 254 SVSSLEAAGLMRKIGNYLDAHIPNID---LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQDS-EFWQLIAYCASTG 327 (395)
Q Consensus 254 l~~~l~~tG~~~~la~~l~~~~~~~~---~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~~-~~~~~l~~~~~~g 327 (395)
++.-+|+||..+.+|+.+.+..+... .+.+.+.+++--+.=.....++.|+... .+.+.+. ....+++.+....
T Consensus 72 ~GkLle~sGaA~~IA~tii~~~G~kr~~~Al~l~g~i~~~~vF~dv~~v~l~Pia~alak~~~is~~~i~v~la~g~~~~ 151 (442)
T COG2610 72 LGKLLEDSGAAESIADTLIRKFGEKRALLALVLAGLILGIPVFFDVGFVLLIPLAFALAKEAGISLLKIAVPLAAGLSVT 151 (442)
T ss_pred HHHHHHHccHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 37778999999999999999887542 2334444444322222234567788753 2222221 2223344444334
Q ss_pred cccccccchhhHHHhccccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 040250 328 GSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFA-GYAAGIAAYLAVNSL 377 (395)
Q Consensus 328 g~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv-~~~~~~~~~~~~~~~ 377 (395)
.+..|.+.++- -..+..+.+...-.-+|....+. .++.+..+.++..|+
T Consensus 152 h~~vpP~Pgpi-a~a~~~~a~~g~~il~g~ivaip~~~iag~~~~~~~~r~ 201 (442)
T COG2610 152 HMFVPPHPGPI-AAAGPFGADIGTVILYGLIVAIPTVIIAGPLFAKLLGRK 201 (442)
T ss_pred cccCCCCCchh-hhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 45555543332 22233566677888899888888 444555544444433
No 133
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=91.15 E-value=7.8 Score=36.97 Aligned_cols=130 Identities=14% Similarity=0.224 Sum_probs=76.1
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCcHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhhhhH--HHHHHHHHHH
Q 040250 10 ELSRASAEVSE--IVFFLLGAMTIVEIVDAHQGFKLVTDNITT-RKPRSLLWVVGFVTFFLSSILDNL--TTTIVMVSLV 84 (395)
Q Consensus 10 ~~~~~~~~~~~--~i~ll~g~~~i~~~l~~sG~~~~la~~i~~-~~~~~l~~~~~l~~~~lS~~~~n~--~~~~i~~Pi~ 84 (395)
++.|-+++..| ++.+++..+++-+..|++|+.|-.++.... ..|+.++.... +++.+.+.. +...+-.|..
T Consensus 247 ~l~e~lkrafnprI~~lliavmvfk~vIe~SGl~e~~ae~~l~f~aP~al~l~~~----fiiGlaTGI~fayvsiafPlL 322 (388)
T COG1906 247 YLLEVLKRAFNPRIVLLLIAVMVFKEVIEHSGLVEIFAEIMLSFHAPVALFLLLT----FIIGLATGIEFAYVSIAFPLL 322 (388)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHhccHHHHHHHHHhccchhhHHHHHHH----HHHHHhhhhHHHHHHHhhhhh
Confidence 45555555544 899999999999999999999944444433 34444433332 444444332 4444666777
Q ss_pred HHhCCCChhhHHHHHHHHHHhhhcccc-ccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHH
Q 040250 85 RKLVPPSEYRKLLGAVVVIAANAGGVW-SPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPL 149 (395)
Q Consensus 85 ~~l~~~~~~~~~l~~~i~~~an~gg~~-tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~ 149 (395)
+..-..-++ ...+++..-+|.+ +|. +..-...+.+.+-+..+-.+.+..|+.+...+.+
T Consensus 323 ~pff~g~~~-----lalay~ggy~GvmlSPv-HlClVlsaeyy~~ei~kvyrklllpavlt~~l~~ 382 (388)
T COG1906 323 MPFFTGFKK-----LALAYAGGYMGVMLSPV-HLCLVLSAEYYKAEIGKVYRKLLLPAVLTFALVG 382 (388)
T ss_pred HHHhccchH-----HHHHHHhhhhheecchh-hhhhheeHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 765222122 1244444444444 444 3333344556677878877788888765554443
No 134
>PRK10420 L-lactate permease; Provisional
Probab=90.54 E-value=12 Score=38.86 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=86.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhh-hhHHHHHH
Q 040250 2 PSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT-RKPRSLLWVVGFVTFFLSSIL-DNLTTTIV 79 (395)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~-~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i 79 (395)
.+.+|..+.+.|..++.....+-+...+.++..|..+|...-++..+.+ ++.+ .+.--++..+-+... +|+..-++
T Consensus 389 ~~~~~~~~~~~~t~k~~~~~~iti~~~vala~vm~~SGm~~~la~~~A~~G~~y--p~~aP~lG~lG~FvTGS~TsSN~L 466 (551)
T PRK10420 389 MKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAF--TFFSPFLGWLGVFLTGSDTSSNAL 466 (551)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCccH--HHHHHHHHhhhcccccccHHHHHH
Confidence 3578899999999999999999999999999999999999998887763 3332 222223333333332 56666777
Q ss_pred HHHHH----HHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccC-CC--ChHHHHHHhHHHHHHHHHH
Q 040250 80 MVSLV----RKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG-QI--STLPTMKSLFIPSAVSLAV 147 (395)
Q Consensus 80 ~~Pi~----~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~-~i--sf~~~~~~~~p~~~v~~~~ 147 (395)
+.++= ++++-+ +. .+.-.-..++..| .++ .|+|+.++... +. .-.+.++..++++++..++
T Consensus 467 F~~lQ~~tA~~lgl~-~~--li~Aaq~~Gg~~G---kmI-spq~I~~a~a~vg~~G~Eg~ilr~t~~~~l~~~~~ 534 (551)
T PRK10420 467 FAALQATAAQQIGVS-DV--LLVAANTTGGVTG---KMI-SPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCM 534 (551)
T ss_pred HHHHHHHHHHHcCCC-HH--HHHHHHHHhhHHh---hcc-CHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 77763 334333 22 2222333444443 444 68998775421 22 2256677777777654433
No 135
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=89.81 E-value=11 Score=39.08 Aligned_cols=138 Identities=11% Similarity=0.090 Sum_probs=88.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh-hhHHHHHHHH
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSIL-DNLTTTIVMV 81 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i~~ 81 (395)
+.+|..+.+.+..++.....+-....+.++..|+.+|..+-++..+.+ ......+.--++..+-+... +|+..-+++.
T Consensus 376 ~~~~~~~~~~~t~k~~~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~~yp~~aP~iG~lG~FiTGS~TsSN~LFg 454 (530)
T TIGR00795 376 SISDAIGVFGETLKEMRLPILTIGMVLAFANVSNYSGMSKTLALALAH-TGLAFTFFSPFLGWLGVFLTGSDTSSNLLFG 454 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCCchHHHHHHHHhhhcccccchHHHHHHHH
Confidence 467888999999999999888888888899999999999999998875 33322333333333333333 5666667777
Q ss_pred HHH----HHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccC-CC--ChHHHHHHhHHHHHHHHHHH
Q 040250 82 SLV----RKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG-QI--STLPTMKSLFIPSAVSLAVP 148 (395)
Q Consensus 82 Pi~----~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~-~i--sf~~~~~~~~p~~~v~~~~~ 148 (395)
++= ++++-+ +. .+.-....++..|. ++ .|+|+.++... |. .-.+.+++.++++++..++.
T Consensus 455 ~lQ~~tA~~lGl~-~~--li~A~q~~Gg~~G~---mI-sp~~I~~a~a~vg~~G~Eg~ilr~t~~~~l~~~i~~ 521 (530)
T TIGR00795 455 SLQLLTAEQIGLP-ET--LLLAANTVGGVMGK---MI-SPQSIAIACAAVGLVGQESDLFRKTVKYSLIYAIIV 521 (530)
T ss_pred HHHHHHHHHcCCC-HH--HHHHHHHHhHHHhh---cc-CHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 764 333333 22 22333444444444 34 68998775421 22 23677777788777655443
No 136
>PRK09695 glycolate transporter; Provisional
Probab=89.63 E-value=14 Score=38.50 Aligned_cols=137 Identities=7% Similarity=0.007 Sum_probs=85.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhh-hhHHHHHH
Q 040250 2 PSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT-RKPRSLLWVVGFVTFFLSSIL-DNLTTTIV 79 (395)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~-~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i 79 (395)
.+.+|..+.+.|.+++.+...+-+...+.++..|+.+|...-+++.+.. |+.+ .+.--++..+-+... +|+..-.+
T Consensus 397 ~~~~~~~~~l~~t~k~~~~~~lti~~~vala~vm~~SGm~~~La~~~a~~G~~y--p~~aP~iG~lG~FvTGS~TsSN~L 474 (560)
T PRK09695 397 VGIKKGIGVFAETLISLKWPILSIGMVLAFAFVTNYSGMSTTLALVLAGTGVMF--PFFSPFLGWLGVFLTGSDTSSNAL 474 (560)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhCccH--HHHHHHHhhhhcccccccHHHHHH
Confidence 3567889999999999999999999999999999999999999998863 3333 222223333333332 56666677
Q ss_pred HHHHH----HHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccC-CC--ChHHHHHHhHHHHHHHHHH
Q 040250 80 MVSLV----RKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHG-QI--STLPTMKSLFIPSAVSLAV 147 (395)
Q Consensus 80 ~~Pi~----~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~-~i--sf~~~~~~~~p~~~v~~~~ 147 (395)
+.++= ++++-+ +. ++.-.-..++..| .++ .|+|+.++... +. .=.+.++..++++++..++
T Consensus 475 F~~lQ~~tA~~lGl~-~~--li~Aaq~~Gg~~G---kmI-spq~I~~a~a~vgl~G~Eg~ilr~t~~~~l~~~~i 542 (560)
T PRK09695 475 FGSLQSTTAQQINVS-DT--LLVAANTSGGVTG---KMI-SPQSIAVACAATGMVGRESELFRYTVKHSLIFASV 542 (560)
T ss_pred HHHHHHHHHHHcCCC-HH--HHHHHHHHhhHHh---hcc-CHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 77763 333333 22 2222333343333 444 68998775421 22 2256666777776654433
No 137
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=88.89 E-value=4.8 Score=40.32 Aligned_cols=89 Identities=10% Similarity=0.067 Sum_probs=68.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHhc-CCchhHHHHHHHHHHHHHHhhhhHH-
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFK-----LVTDNITT-RKPRSLLWVVGFVTFFLSSILDNLT- 75 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~-----~la~~i~~-~~~~~l~~~~~l~~~~lS~~~~n~~- 75 (395)
+++|..+.+.|+.++....++.+...--+...++++|+.+ .+++.+.+ .+........++.++++..|+++..
T Consensus 293 tp~~~~~a~~~g~~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la~~lvs~a~~~~f~l~~~l~~~liNfFIPSGsG 372 (438)
T TIGR00366 293 TPMAYMRAITRAARSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLITEFFINVANKDTFPLMTFFSAGLINIFIPSGGG 372 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHhhCCccHHHHHHHHHHHHHHhcccCchH
Confidence 5789999999999999998888887778888889999999 88877765 3666667777799999999986553
Q ss_pred HHH----HHHHHHHHhCCCC
Q 040250 76 TTI----VMVSLVRKLVPPS 91 (395)
Q Consensus 76 ~~~----i~~Pi~~~l~~~~ 91 (395)
=.+ ++.|..+.++-++
T Consensus 373 qwai~aPImvP~a~~LGvs~ 392 (438)
T TIGR00366 373 HWAIQGPIVIPAAQALGVDL 392 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 223 4556666666553
No 138
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=88.70 E-value=31 Score=35.35 Aligned_cols=140 Identities=9% Similarity=0.046 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh------cCCchhHHHHHHHHHHHHHHhhhhHH-
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT------TRKPRSLLWVVGFVTFFLSSILDNLT- 75 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~------~~~~~~l~~~~~l~~~~lS~~~~n~~- 75 (395)
+++|+.+...+++++..+.+++.+...-+.+.+++|++.+.+|.+-. +-++..++..+.++++++-.|+.+..
T Consensus 323 s~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~Sa 402 (502)
T PF03806_consen 323 SDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSASA 402 (502)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcchh
Confidence 57899999999999999999999999999999999999999997642 33667788888899999999886543
Q ss_pred HHHHHHH----HHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhc----cCCCChHHHHHHhHHHHHHHH
Q 040250 76 TTIVMVS----LVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWI----HGQISTLPTMKSLFIPSAVSL 145 (395)
Q Consensus 76 ~~~i~~P----i~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~----~~~isf~~~~~~~~p~~~v~~ 145 (395)
==+++.| ....++-++..... .==++-......||.-.---++++. ..+.+..+.+..++|.++..+
T Consensus 403 KWailAPifVPM~m~lg~sP~~tQ~---aYRigDS~TN~ItPl~~yf~lil~~~qkY~k~~giGTlis~mlPysi~~l 477 (502)
T PF03806_consen 403 KWAILAPIFVPMFMLLGYSPALTQA---AYRIGDSSTNIITPLMPYFPLILGFAQKYDKKAGIGTLISLMLPYSIAFL 477 (502)
T ss_pred hHHHHHhHHHHHHHHcCCCHHHHHH---HHHhccccccccCccHHHHHHHHHHHHHhCcCccHHHHHHHHHHHHHHHH
Confidence 3344444 44555543222110 1111222223334432111112211 236778888888888776443
No 139
>COG2056 Predicted permease [General function prediction only]
Probab=88.68 E-value=11 Score=36.56 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=57.2
Q ss_pred HHHHHHHhcCcHHHHHHHHhc--CCchhHHHHHHHHHHHH------HHhhhhHHHHHHHHHHHHHhCCCChhhHHHHHHH
Q 040250 30 TIVEIVDAHQGFKLVTDNITT--RKPRSLLWVVGFVTFFL------SSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVV 101 (395)
Q Consensus 30 ~i~~~l~~sG~~~~la~~i~~--~~~~~l~~~~~l~~~~l------S~~~~n~~~~~i~~Pi~~~l~~~~~~~~~l~~~i 101 (395)
=+++.++++|-.|.+.+-... ++.+.+-..+|++..++ |+|.+--..+.+..|++.+++.+ |.. ....+
T Consensus 309 Gfa~Vi~~TG~V~~LV~s~~~~~g~sK~l~a~lMlvvGLlITMGIGsSF~TIPIIA~iyVPLc~~lGFS-p~a--ti~li 385 (444)
T COG2056 309 GFAEVINATGAVEELVESSSSIIGQSKLLAALLMLVVGLLITMGIGSSFGTIPIIAAIYVPLCLKLGFS-PLA--TIALI 385 (444)
T ss_pred HHHHHHHhccCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccccchHHHHHHHHhHHHHhCCC-HHH--HHHHH
Confidence 356788999999988876641 44444444444444333 44444444455778999999766 332 34568
Q ss_pred HHHhhhccccccccccc
Q 040250 102 VIAANAGGVWSPIGDVT 118 (395)
Q Consensus 102 ~~~an~gg~~tpiG~~~ 118 (395)
..++.+|-+.+|-+|.+
T Consensus 386 G~AaALGDAGSPASDST 402 (444)
T COG2056 386 GTAAALGDAGSPASDST 402 (444)
T ss_pred HHHHHhcCCCCCcccCC
Confidence 88999999999988764
No 140
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=87.62 E-value=8.9 Score=32.28 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHh-cCHHHHHHHhhhhcccCCCCChhHHHHHHHHHh
Q 040250 247 FFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVI-DNVPLVAATIGMYDLTSLPQDSEFWQLIAYCAS 325 (395)
Q Consensus 247 ~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i-~N~p~~~~~~pi~~~~~~~~~~~~~~~l~~~~~ 325 (395)
++.|+-.+.+++++..- +.+-+.+.+..+++..-.+...+++.++ |+.+++.+.++.+....++ .+...++.+++|
T Consensus 2 ~l~gl~~l~~~l~~~~~-~~~~~~l~~~~~~~~~~~l~G~~~T~l~QSSsa~~~i~v~l~~~g~l~--~~~al~~ilGaN 78 (142)
T PF02690_consen 2 FLFGLRLLSSGLKPLAG-PRLRALLARLTSNPLLAFLLGALLTALVQSSSAVTLIVVSLVAAGVLS--LEQALAIILGAN 78 (142)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcccC--HHHHHHHHHhhh
Confidence 56788888888877655 5566666666665555556666777766 4566666666776432222 344577889999
Q ss_pred hcccccc
Q 040250 326 TGGSMLI 332 (395)
Q Consensus 326 ~gg~~tp 332 (395)
+|...++
T Consensus 79 iGtt~~~ 85 (142)
T PF02690_consen 79 IGTTITA 85 (142)
T ss_pred HHHHHHH
Confidence 9865444
No 141
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=86.56 E-value=24 Score=31.86 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=49.1
Q ss_pred CcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccc
Q 040250 39 QGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVT 118 (395)
Q Consensus 39 G~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~ 118 (395)
++..+++.|+.+.|.- ...++++..+.|+++++..+.-..|+- |+ ..+... ..+.-+|.. + -+.
T Consensus 7 sf~gYia~r~~G~r~G------l~ltg~~GGlvSSTA~t~~la~~~r~~--p~-~~~~~~-~~i~lA~~~--m----~~R 70 (211)
T PF13194_consen 7 SFAGYIAVRLLGPRRG------LLLTGLLGGLVSSTATTVSLARRSREN--PE-LSRLLA-AGILLASAV--M----FVR 70 (211)
T ss_pred hHHHHHHHHHHcccch------HHHHHHHHHHHHHHHHHHHHHHHHhhC--cc-hhHHHH-HHHHHHHHH--H----HHH
Confidence 4566777788754421 245677888888888888766555442 21 222222 222222221 1 245
Q ss_pred hhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHH
Q 040250 119 TTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALL 152 (395)
Q Consensus 119 n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~ 152 (395)
+.++....+ .+......+|.....++.....
T Consensus 71 ~l~iv~i~~---~~l~~~l~~p~~~~~~~~~~~a 101 (211)
T PF13194_consen 71 VLLIVAILN---PALLRSLALPLLAMALVGLLAA 101 (211)
T ss_pred HHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 555432222 2455566677766555444333
No 142
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=86.00 E-value=23 Score=36.18 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=83.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhh-hhHHHHHHH
Q 040250 2 PSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSIL-DNLTTTIVM 80 (395)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~-~n~~~~~i~ 80 (395)
++..+..+.+.|.+++.+..++-+.+.+.++..+..+|..+-+++.+.+. .....+.--++..+-+.+. +|+..=+++
T Consensus 362 ~~~~~~~~~~~~t~k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~fp~fSp~lGwiG~FltGS~T~sN~lF 440 (522)
T COG1620 362 IKPKDAVTAFKETLKELKLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEAFPLFSPFLGWIGVFLTGSNTSSNLLF 440 (522)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCCchhHhHHHHHHhhhhcccchHHHHHH
Confidence 46788999999999999999999999999999999999999999888643 2222333333333333343 455555566
Q ss_pred HHHH----HHhCCCChhhHHHHHHHHHHhhh-cc-ccccccccchhhhhccC-CCC--hHHHHHHhHHHHHHHH
Q 040250 81 VSLV----RKLVPPSEYRKLLGAVVVIAANA-GG-VWSPIGDVTTTMLWIHG-QIS--TLPTMKSLFIPSAVSL 145 (395)
Q Consensus 81 ~Pi~----~~l~~~~~~~~~l~~~i~~~an~-gg-~~tpiG~~~n~i~~~~~-~is--f~~~~~~~~p~~~v~~ 145 (395)
-|+= ++.+-++ . ++ . ++|. || +.-++ .|+|+.++... |+. =.|-+++..+|+++-.
T Consensus 441 g~lQ~~~A~~iG~s~-~--l~---~--AantvGg~~gkMI-spqsIa~acaavg~~gkEg~l~r~tv~~sl~~~ 505 (522)
T COG1620 441 GPLQQTTAEQIGLSP-V--LL---V--AANTVGGVMGKMI-SPQSIAAACAAVGLVGKEGDLLRKTVKPSLIYL 505 (522)
T ss_pred HHHHHHHHHHcCCCH-H--HH---H--HHHhhhhhhcccc-CHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence 6663 3333332 1 11 2 2222 22 23455 68998876532 332 2566667777776433
No 143
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=85.66 E-value=1.1 Score=42.58 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-h
Q 040250 9 SELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRK-L 87 (395)
Q Consensus 9 ~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~-l 87 (395)
|.+.+|+++-.+--.++.--+.+++...+..+|..+......-++...+..+.+..+++|+..+|+-+.-+-+-=+|+ +
T Consensus 344 H~iGkAFqEsLPFTALL~VFFsvVAVIidQ~LF~PiIqfVL~a~~~~Ql~lfyifNGLLS~iSDNVFV~TvYInE~k~Al 423 (516)
T COG3067 344 HAIGKAFQESLPFTALLTVFFSVVAVIIDQHLFSPIIQFVLQASEHAQLSLFYIFNGLLSSISDNVFVGTIYINEAKAAL 423 (516)
T ss_pred hhhHHHHHhcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCCcccchhHHHHHhhHHHhhccceEEEEEEehhHHHHH
Confidence 677788877777555555556666677777799999998887777788889999999999999998433222222232 2
Q ss_pred --C--CCChhhHHHHHHHHHHhhhccccccccccchhhhhcc-----CCCChHHHHHHhHHHHHHHHHHHHHHHHh
Q 040250 88 --V--PPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIH-----GQISTLPTMKSLFIPSAVSLAVPLALLSL 154 (395)
Q Consensus 88 --~--~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~-----~~isf~~~~~~~~p~~~v~~~~~~~~~~~ 154 (395)
+ ..+++- ++...+--++|+-+..||=|...=+..-.. -.+|+........|..++...+.++...+
T Consensus 424 ~~G~is~~qfe-lLaVAINTGTNLPSVATPNGQAAFLFLLTSalaPLiRLSYGRMV~MAlPYTlvl~~iGll~vef 498 (516)
T COG3067 424 EAGAISLKQFE-LLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLAVEF 498 (516)
T ss_pred HcCCcCHHhhh-HhhehhhcCCCCCcccCCCchhhHHHHHHhhhhHHHhhhhcceeeeeccHHHHHHHHHHHHHHH
Confidence 1 122232 334455667777788888776654443221 14566554444667777666665555444
No 144
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=83.69 E-value=4.3 Score=42.19 Aligned_cols=144 Identities=18% Similarity=0.074 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHH-HHHhCHHHHHHHHHHhhcCch----h-HHHHHHHH-----HHHHhcCHHHHHHHhhhhcccCCCC
Q 040250 244 VPLFFLGILLSVSS-LEAAGLMRKIGNYLDAHIPNI----D-LIASAIGV-----VSAVIDNVPLVAATIGMYDLTSLPQ 312 (395)
Q Consensus 244 ~l~~~~g~~~l~~~-l~~tG~~~~la~~l~~~~~~~----~-~~~~~~~~-----lS~~i~N~p~~~~~~pi~~~~~~~~ 312 (395)
.-.-+..+|++-++ ++++|+.|++-+......+.. . .-.+.+++ -|...|.+.+-..-+|..+..++++
T Consensus 187 Vs~~~IflFilFga~l~~~G~g~~fid~a~a~~G~~~GGpak~aVv~Sgl~G~isGSsvAN~vttG~fTIPlMkR~Gy~~ 266 (642)
T COG4666 187 VSWTFIFLFILFGAFLVKSGAGQFFIDLAFALAGLRRGGPAKVAVVSSGLMGMISGSSVANTVTTGSFTIPLMKRAGYPP 266 (642)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCCCcceeeecchhheecchhhhhhhhcceeeHHHHHhcCCCh
Confidence 33445556665554 599999999988877765432 1 11111111 1333333333344468876544433
Q ss_pred ChhHHHHHHHHHhhccccccc--cchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q 040250 313 DSEFWQLIAYCASTGGSMLII--GSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAPI 390 (395)
Q Consensus 313 ~~~~~~~l~~~~~~gg~~tpi--gs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (395)
. ..-+.=-+++.||.+.|. |+.+- +..+..++.+.|..+.++..+++.....+..-++..+..=.+++..+|+|+
T Consensus 267 ~--~AgAvEaaAS~GGQimPPiMGAAAF-iMae~~gipY~~ii~aA~iPAllyy~~v~~~V~~eA~k~~~~gl~~~~lp~ 343 (642)
T COG4666 267 E--FAGAVEAAASTGGQLMPPVMGAAAF-IMAEYLGIPYTEIILAAFIPALLYYFGVILMVHLEAKKDGLPGLPREQLPP 343 (642)
T ss_pred h--cccceehhhhcCCchhhhhHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhCCc
Confidence 2 112222345677776543 44443 333456899999999999999988776655455555555556677778875
No 145
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length. The function of this family is unknown.
Probab=83.35 E-value=12 Score=36.94 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhc-------cCCCChH
Q 040250 59 VVGFVTFFLSSILDNLTTTIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWI-------HGQISTL 131 (395)
Q Consensus 59 ~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~-------~~~isf~ 131 (395)
.++..+..++++.||.+.+-+-. ++. +-++.+ |. .+.-+|-.||..|-|+|.||..=.. .++++-.
T Consensus 346 ~lf~ga~~LTa~tDNAalTYLgs-lv~--g~sd~~-kY---alVAGAVtGGGLTVIANAPNpaG~aiLr~~F~d~~Is~~ 418 (438)
T PF07399_consen 346 ALFFGATALTAFTDNAALTYLGS-LVP--GLSDAF-KY---ALVAGAVTGGGLTVIANAPNPAGQAILRKHFPDGSISPL 418 (438)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-hcc--CCCHHH-HH---HHHhheeccCceeEeccCCChhhHHHHhccCCCCCcChH
Confidence 45677888999999987655321 222 222222 21 3566888999999999999964211 2357777
Q ss_pred HHHHHhHHHHHHHHHHH
Q 040250 132 PTMKSLFIPSAVSLAVP 148 (395)
Q Consensus 132 ~~~~~~~p~~~v~~~~~ 148 (395)
..+...++|.++.....
T Consensus 419 ~L~l~AL~PT~ia~~~F 435 (438)
T PF07399_consen 419 GLFLAALPPTLIAALAF 435 (438)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 78888888888765443
No 146
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=80.73 E-value=3.2 Score=40.25 Aligned_cols=130 Identities=7% Similarity=0.056 Sum_probs=75.9
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh----HH-HHHHHHHHHHhcCHH-HHHHHhhhhcc----
Q 040250 238 SRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID----LI-ASAIGVVSAVIDNVP-LVAATIGMYDL---- 307 (395)
Q Consensus 238 ~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~----~~-~~~~~~lS~~i~N~p-~~~~~~pi~~~---- 307 (395)
.+.||++++.+.+...-.+++|.+|-.|++-+.-.+.+...+ .+ =+++-.+|- +..+. ++.-.+|++.+
T Consensus 44 ~~~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~iT~lAP~Vty~lT~-maGTGh~vySilPVI~eVA~~ 122 (436)
T COG2704 44 GKPPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKYITILAPFVTYTLTI-LAGTGHVVYSILPVIAEVAKK 122 (436)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCeEEEehhHHHHHHHH-hhcCCceeeeehhHHHHHHHH
Confidence 468999999999999999999999999998777766553221 11 122333332 22222 22334577643
Q ss_pred cCCCCChhHHHHHHHHHhhccccccccchhhHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHH
Q 040250 308 TSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGM--EKVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~--~~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
++..+..|+- +-..++-++=...|++...-.+..-+ .+.++.+-+-..+|-+++...+.-+
T Consensus 123 ~gIrPeRPls-~avVsSQ~aItASPISAAVV~~~a~l~~~g~~~l~ll~v~IPaTl~g~~~~~l 185 (436)
T COG2704 123 NGIRPERPLS-AAVVSSQIAITASPISAAVVYMSAVLEPLGISYLTLLMVTIPSTLLGVLLMAL 185 (436)
T ss_pred cCCCCCCcch-HHHHHhhhhhhcCchHHHHHHHHHHHhhcCcchheeeeEEecHHHHHHHHHHH
Confidence 4444433432 22334444444567754332222212 3455677777888999888776654
No 147
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=77.98 E-value=8.1 Score=32.52 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCCCChhhHHHHHH
Q 040250 24 FLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSILD-NLTTTIVMVSLVRKLVPPSEYRKLLGAV 100 (395)
Q Consensus 24 ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~~-n~~~~~i~~Pi~~~l~~~~~~~~~l~~~ 100 (395)
+++|+-.+.+.+++-.- +++.+.+. .++| +.-.+.+.+++..+. +.+++.+..+++.+=.-+.+. .++
T Consensus 2 ~l~gl~~l~~~l~~~~~-~~~~~~l~~~~~~~----~~~~l~G~~~T~l~QSSsa~~~i~v~l~~~g~l~~~~----al~ 72 (142)
T PF02690_consen 2 FLFGLRLLSSGLKPLAG-PRLRALLARLTSNP----LLAFLLGALLTALVQSSSAVTLIVVSLVAAGVLSLEQ----ALA 72 (142)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHHHHHHcCCC----HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcccCHHH----HHH
Confidence 57788888888877655 55544443 2444 334446777777774 556677778888652122122 467
Q ss_pred HHHHhhhccccccc
Q 040250 101 VVIAANAGGVWSPI 114 (395)
Q Consensus 101 i~~~an~gg~~tpi 114 (395)
+.+++|+|+..++.
T Consensus 73 ~ilGaNiGtt~~~~ 86 (142)
T PF02690_consen 73 IILGANIGTTITAL 86 (142)
T ss_pred HHHhhhHHHHHHHH
Confidence 89999999877544
No 148
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=77.85 E-value=9.2 Score=29.29 Aligned_cols=47 Identities=6% Similarity=-0.011 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc
Q 040250 4 TEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT 50 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~ 50 (395)
.+|+.+.+.+++.+..++-+--+..-.++.++.|||+.|.+++++.+
T Consensus 39 l~~t~~~~~~Gmgg~a~~ALSY~lLGafA~aIs~sGl~~~L~~~i~~ 85 (88)
T PF13726_consen 39 LGETMSAFIDGMGGNAETALSYILLGAFAVAISKSGLTDILAKKIIK 85 (88)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 57888899999999999777777777788999999999999999864
No 149
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=75.24 E-value=69 Score=30.41 Aligned_cols=150 Identities=13% Similarity=0.086 Sum_probs=88.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh----cCCchhHHHHHHHHHHHHHHhhhhHHHH
Q 040250 2 PSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT----TRKPRSLLWVVGFVTFFLSSILDNLTTT 77 (395)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~----~~~~~~l~~~~~l~~~~lS~~~~n~~~~ 77 (395)
|++.+..+|=.+-++......++==-.-.+...+.++|+-|.+++-+. .++...-....++-.++..+.+.|--+.
T Consensus 144 ~~~~~~~~e~~Rll~~vG~a~iLPQlLAaLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAA 223 (308)
T PF06166_consen 144 PKPKQPLKESRRLLDQVGWAAILPQLLAALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAA 223 (308)
T ss_pred CChhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHH
Confidence 456667777666666665544443344456788899999999998774 4666666777788888889999877444
Q ss_pred -HHHH-----HHHHHh-CCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCC-hHHHHHHhHHHHHHHHHHHH
Q 040250 78 -IVMV-----SLVRKL-VPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQIS-TLPTMKSLFIPSAVSLAVPL 149 (395)
Q Consensus 78 -~i~~-----Pi~~~l-~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~is-f~~~~~~~~p~~~v~~~~~~ 149 (395)
.+++ |++.+. +.+ |. .....-..+.-.|.-+||....-|++=+.-.++. =..-.+.=.|.+++.+++-+
T Consensus 224 F~ViTaGIGiPfvi~~~Ggn-Pa--ivgAlgM~aGyCGTLmTPMAANFNiVPaALLElkDk~gVIKaQ~p~Al~llvv~I 300 (308)
T PF06166_consen 224 FPVITAGIGIPFVIAQFGGN-PA--IVGALGMTAGYCGTLMTPMAANFNIVPAALLELKDKYGVIKAQAPTALVLLVVNI 300 (308)
T ss_pred hHHHHhccCceEEEecCCCC-HH--HHHHHHHhhcchhcccChhhhhcCcchHHHhcCCccccchhhhhHHHHHHHHHHH
Confidence 3443 555333 333 22 1111223333445557888777776532211111 11223334466777666666
Q ss_pred HHHHh
Q 040250 150 ALLSL 154 (395)
Q Consensus 150 ~~~~~ 154 (395)
.++|+
T Consensus 301 ~LMy~ 305 (308)
T PF06166_consen 301 VLMYF 305 (308)
T ss_pred HHHHH
Confidence 66654
No 150
>COG1288 Predicted membrane protein [Function unknown]
Probab=73.24 E-value=11 Score=37.55 Aligned_cols=136 Identities=9% Similarity=-0.013 Sum_probs=74.0
Q ss_pred ccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-----HHHHHHHHHHHHh----cCHHHHHHHhhhhcccC
Q 040250 239 RINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID-----LIASAIGVVSAVI----DNVPLVAATIGMYDLTS 309 (395)
Q Consensus 239 ~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~-----~~~~~~~~lS~~i----~N~p~~~~~~pi~~~~~ 309 (395)
.+|--...++.|.+ .+.+++||..|.--..+.+...+.. .+...-++...+. ...|.+-+++|+....+
T Consensus 96 Av~Ii~FiLviGG~--~GIvnkTGaid~Gi~ali~k~kG~e~llI~~l~ilFslgGt~~Gm~EEaiaFypIliPv~ialG 173 (481)
T COG1288 96 AVDIIFFILVIGGA--FGIVNKTGAIDAGIAALIRKTKGKEFLLIPVLFILFSLGGTVFGMGEEAIAFYPILIPLMVALG 173 (481)
T ss_pred ccceeeehhhhcce--eeeeeccchHHHHHHHHhhhcCCCeEEEeeHHHHHHHhccccccchHHHHHHHHHHHHHHHHhC
Confidence 34444444444444 5778999999888777777655432 1222222222222 23667777778876544
Q ss_pred CCCChhHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 310 LPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 310 ~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
++.-.. .....+++.+|...+.+...+..++.+..++++.|=+.+=+...++....++.+.|...|.
T Consensus 174 yDsi~~-va~i~lgt~iG~~~St~NPF~~~IAq~iAGip~~sG~~~Riv~~v~~~~~~i~y~~~Ya~K 240 (481)
T COG1288 174 YDSITG-VAIIYIGTQIGFAASTMNPFATVIAQNIAGIPFLSGMGLRIVVWVVFTLISIIYVYWYASK 240 (481)
T ss_pred CchHHH-HHHHHHHhccchhhhhcCchHHHHHhhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432111 2333445555555555555555566666666665544444455555566666666666543
No 151
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=72.44 E-value=1.1e+02 Score=31.74 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHhcC-HHHHHHHhhhhcccCCCCChhHHHHHHHH
Q 040250 245 PLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDN-VPLVAATIGMYDLTSLPQDSEFWQLIAYC 323 (395)
Q Consensus 245 l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i~N-~p~~~~~~pi~~~~~~~~~~~~~~~l~~~ 323 (395)
-+++.|+=.++++.+-..-.+...+.+....+++..-+++.++++..... .+++.++.......-. +.....++.++
T Consensus 141 Gl~f~sl~l~~~a~~pl~~s~~~~~~i~~l~~~~~~~l~~g~~lt~l~~SS~A~i~i~~~l~~~gli--s~~~~~alvLG 218 (533)
T COG1283 141 GLIFLSLELLGQATEPLRQSPAFSDFIAKLSDDPIVALLIGALLTALIQSSLAAIGILLSLTSQGLI--SLEAALALVLG 218 (533)
T ss_pred HHHHHHHHHHHHhhhhhhhchhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHH
Confidence 34444444556666666666777777766665565566677777776644 4444444444332111 23445788999
Q ss_pred Hhhcccccccc
Q 040250 324 ASTGGSMLIIG 334 (395)
Q Consensus 324 ~~~gg~~tpig 334 (395)
+|+|+..|++.
T Consensus 219 aNlGt~i~a~l 229 (533)
T COG1283 219 ANLGTTITAVL 229 (533)
T ss_pred HhhhchhHHHH
Confidence 99998877664
No 152
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=68.46 E-value=1.4e+02 Score=30.28 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH---h---cCCchhHHHHHHHHHHHHHHhhhhHHH
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNI---T---TRKPRSLLWVVGFVTFFLSSILDNLTT 76 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i---~---~~~~~~l~~~~~l~~~~lS~~~~n~~~ 76 (395)
|++|+.+...|..++...-+++.+..-=+.+.++.|++-..+|.+= + +-+.-.++..+.++++++-.++.+..+
T Consensus 335 ~~kDvv~~M~~~m~sMg~yiV~~FfaaQFva~FnwSn~G~~~AV~GA~~L~~~gl~g~~lil~~illsa~inL~IgSASA 414 (516)
T COG2978 335 NDKDVVNMMAESMSSMGGYIVIAFFAAQFVAFFNWSNLGTIMAVKGADFLKAIGLTGLPLILGFILLSAFINLFIGSASA 414 (516)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccccchhheechHhHHHHcCCCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 6889999999999999998888888889999999999999998543 2 346666778888888888888755432
Q ss_pred -HH----HHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhc----cCCCChHHHHHHhHHHHHHHH
Q 040250 77 -TI----VMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWI----HGQISTLPTMKSLFIPSAVSL 145 (395)
Q Consensus 77 -~~----i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~----~~~isf~~~~~~~~p~~~v~~ 145 (395)
=. ++.|....++-++.... ..-=++.......||.-.---+++.. ..+.+.......+.|.++..+
T Consensus 415 kWailaPIfVPMlMllGysPe~tQ---aayRigDS~tniiTPlm~yfpLil~~~~kY~k~~GvGTL~s~mLPYsi~f~ 489 (516)
T COG2978 415 KWAILAPIFVPMLMLLGYSPEFTQ---AAYRIGDSVTNIITPLMPYFPLILAYAQKYDKDAGVGTLMSMMLPYSIAFL 489 (516)
T ss_pred HHHHHhhHHHHHHHHhcCCHHHHH---HHHHhcccccccccchhhhHHHHHHHHHHhCcCccHHHHHHHhhhHHHHHH
Confidence 23 44555555554422211 01111222222333332211222221 124566677777777766443
No 153
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=65.93 E-value=24 Score=33.88 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhCCCChhhH
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSILDNL-TTTIVMVSLVRKLVPPSEYRK 95 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~~n~-~~~~i~~Pi~~~l~~~~~~~~ 95 (395)
...-+++.|+-.+.+++++.. .+++.+++. .++|++ -.+.+.++++.+.+. +++.+..-++.+=.-+ .+.
T Consensus 9 gGlgl~l~Gl~~~~~~l~~~~-g~~~~~~l~~~t~~~~~----a~l~G~~~Tal~QSSsa~t~i~i~lv~~G~l~--~~~ 81 (307)
T TIGR00704 9 SAVAFLLWGMHIVRTGVMRVF-GARLRTVLSRSTEKKPL----AFLAGIGVTAIVQSSNATTVLVISFVAAGVLS--LAP 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHH
Confidence 467788999999999998773 355555553 244433 233566677777544 4445555555431112 222
Q ss_pred HHHHHHHHHhhhccccccc
Q 040250 96 LLGAVVVIAANAGGVWSPI 114 (395)
Q Consensus 96 ~l~~~i~~~an~gg~~tpi 114 (395)
.+.+..++|+|+..|..
T Consensus 82 --al~iilGANiGTt~t~~ 98 (307)
T TIGR00704 82 --AIVIILGANVGTTLTAR 98 (307)
T ss_pred --HHHHHHHhhHHHHHHHH
Confidence 46899999999877643
No 154
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=65.13 E-value=45 Score=33.53 Aligned_cols=103 Identities=14% Similarity=0.195 Sum_probs=52.3
Q ss_pred cCCchhHHHHHHHHHHHHHHhhhhHHHHHHH---H-----------HHH-HHh----CCCChhhHHHHHHHHHHhhhccc
Q 040250 50 TRKPRSLLWVVGFVTFFLSSILDNLTTTIVM---V-----------SLV-RKL----VPPSEYRKLLGAVVVIAANAGGV 110 (395)
Q Consensus 50 ~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~---~-----------Pi~-~~l----~~~~~~~~~l~~~i~~~an~gg~ 110 (395)
|.|||+++..-.+++++...+..-.....++ + |-+ +.+ .+++|-+. .-.=-.+=|+||.
T Consensus 90 r~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~--~siWn~shNiGGa 167 (448)
T COG2271 90 RSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTW--WSIWNTSHNIGGA 167 (448)
T ss_pred cCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCce--EEEehhhhhcccc
Confidence 5689888887777777776665433333322 2 222 222 12222111 0112335588887
Q ss_pred cccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhhhhccc
Q 040250 111 WSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLTSEVNR 160 (395)
Q Consensus 111 ~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~~~~~~ 160 (395)
..|.=..- .....+ .+|-.....|+++++++.+..+++.|++|+
T Consensus 168 l~~~~~~l-a~~~~~-----~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 168 LAPLVALL-AFFAFH-----GGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred hHHHHHHH-HHHHhc-----cchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 75431110 011111 156555566888888777777766665543
No 155
>PRK10519 hypothetical protein; Provisional
Probab=63.81 E-value=67 Score=27.36 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 040250 4 TEIAVSELSRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNI 48 (395)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i 48 (395)
.|...+=.+|+++... +.+=.++.++++.+.++++|.+|++.+.+
T Consensus 8 ~d~Fv~GakeG~~i~~~~iiP~li~~~v~I~iL~~sG~ld~l~~~l 53 (151)
T PRK10519 8 TDIFIDGARKGFTIATTNLLPNVLMAFVIIQALNITGLLDLVGHIF 53 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4566666777777777 57888999999999999999999999877
No 156
>PRK10519 hypothetical protein; Provisional
Probab=60.49 E-value=31 Score=29.41 Aligned_cols=118 Identities=12% Similarity=0.182 Sum_probs=65.5
Q ss_pred ccCc-hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC-----chhHHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCC
Q 040250 239 RINM-QVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP-----NIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQ 312 (395)
Q Consensus 239 ~v~w-~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~-----~~~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~ 312 (395)
++-| +.+-.+...+++++.++++|+.|++++.+.+..+ +.....++++.+| -......+..+.....+
T Consensus 20 ~i~~~~iiP~li~~~v~I~iL~~sG~ld~l~~~l~Pvm~llGLPgea~~vll~g~ls----~~~a~~vl~~L~~~G~L-- 93 (151)
T PRK10519 20 TIATTNLLPNVLMAFVIIQALNITGLLDLVGHIFGPVMALFGLPGEAATVLLAAWMS----MGGAVGVAASLFTAGAL-- 93 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----HHHHHHHHHHHHHcCCC--
Confidence 3567 5888999999999999999999999999998642 1223445555554 23333334454432222
Q ss_pred ChhHHHHHHHHHhhccccccccchhhHHH--hccccccHHHHHHHHHHHHHHHHHHHHH
Q 040250 313 DSEFWQLIAYCASTGGSMLIIGSAAGVAF--MGMEKVDFFWYFRKVSGFAFAGYAAGIA 369 (395)
Q Consensus 313 ~~~~~~~l~~~~~~gg~~tpigs~an~i~--~~~~~~~~~~~~k~g~p~~lv~~~~~~~ 369 (395)
+..+...+ ...+...|+.-+... .+..+.+- +|++.-+-.+++..+++..
T Consensus 94 T~~Q~~VL------~~~~~l~g~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~a~~~~~ 145 (151)
T PRK10519 94 TGHHVTIL------LPAIYLMGSQVQYMGRILGVAEVNA-KYYPHLIAVCIINALLAML 145 (151)
T ss_pred CHHHHHHH------HHHHHHhchHHHHHHHhhhccCCCc-chhHHHHHHHHHHHHHHHH
Confidence 22222111 112234445544332 12233333 3445556666666666654
No 157
>COG3732 SrlE Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]
Probab=57.54 E-value=23 Score=32.78 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=59.5
Q ss_pred CHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHH-----HHHHHhcCHHHHHHHhhhhc
Q 040250 232 KVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIG-----VVSAVIDNVPLVAATIGMYD 306 (395)
Q Consensus 232 ~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~-----~lS~~i~N~p~~~~~~pi~~ 306 (395)
+.+..+|++ +-|.+-.-.+.+.+..||+-+++|+.+.+..++..-+..++. ++|.|..--++.+=.+.+..
T Consensus 178 tid~vlkni----lPFMAFvs~lIgii~~tglGd~iA~~l~PLA~~~~Gll~la~iC~~P~LSP~LGPGAvIaQViGVlI 253 (328)
T COG3732 178 TIDTVLKNI----LPFMAFVSALIGIILYTGLGDVIAHGLSPLANSIWGLLLLALICSFPFLSPFLGPGAVIAQVIGVLI 253 (328)
T ss_pred HHHHHHHHh----HHHHHHHHHHHHHHHHhhhHHHHhccccccccChHHHHHHHHHhcccccCcccCcchhhhhhheeee
Confidence 445566654 677777777889999999999999999998877653333332 34555555555444444443
Q ss_pred ccCCCC---ChhHHHHHHHHHh--hcccccccc
Q 040250 307 LTSLPQ---DSEFWQLIAYCAS--TGGSMLIIG 334 (395)
Q Consensus 307 ~~~~~~---~~~~~~~l~~~~~--~gg~~tpig 334 (395)
..+.+. ++.+.+.-.++.| .|.-+-|+|
T Consensus 254 G~qIg~G~Ipp~~ALPALFAiN~Q~gcDFiPVG 286 (328)
T COG3732 254 GVQIGLGNIPPHLALPALFAINAQAGCDFIPVG 286 (328)
T ss_pred eeeeccCCCChhhhhhhHhhccccccCceeecc
Confidence 322221 2334444455555 344466766
No 158
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=51.63 E-value=81 Score=30.26 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHHHHHHHhcC-HHHHHHHhhhhcccCCCCChhHHHHHHH
Q 040250 244 VPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIGVVSAVIDN-VPLVAATIGMYDLTSLPQDSEFWQLIAY 322 (395)
Q Consensus 244 ~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~lS~~i~N-~p~~~~~~pi~~~~~~~~~~~~~~~l~~ 322 (395)
.-+++.|+-.+.+++++.. .+.+-+.+.+..+++..-.+...+.+.++.+ .+++.+.+..+...-+ +.+....+.+
T Consensus 11 lgl~l~Gl~~~~~~l~~~~-g~~~~~~l~~~t~~~~~a~l~G~~~Tal~QSSsa~t~i~i~lv~~G~l--~~~~al~iil 87 (307)
T TIGR00704 11 VAFLLWGMHIVRTGVMRVF-GARLRTVLSRSTEKKPLAFLAGIGVTAIVQSSNATTVLVISFVAAGVL--SLAPAIVIIL 87 (307)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHH
Confidence 3456677777777776662 3455555555555554444555666666644 3333333333322111 2344577888
Q ss_pred HHhhcccccc
Q 040250 323 CASTGGSMLI 332 (395)
Q Consensus 323 ~~~~gg~~tp 332 (395)
++|+|...|.
T Consensus 88 GANiGTt~t~ 97 (307)
T TIGR00704 88 GANVGTTLTA 97 (307)
T ss_pred HhhHHHHHHH
Confidence 8998876543
No 159
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=46.48 E-value=34 Score=32.16 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchhHHHHHHH-----HHHHHhcCHHHHHHHhhhhcccCCCC---Ch
Q 040250 243 QVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNIDLIASAIG-----VVSAVIDNVPLVAATIGMYDLTSLPQ---DS 314 (395)
Q Consensus 243 ~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~-----~lS~~i~N~p~~~~~~pi~~~~~~~~---~~ 314 (395)
+.+-|.+-.-.+.+.+..||+-+|+|+.+.++.++..-+..++. ++|.|+.--++.+=.+..+...+.+. .+
T Consensus 188 tIlPFMAFVs~LIGiI~~sGiGd~iA~~l~PLAg~~~GLv~l~~ICs~PfLSP~LGPGAVIaQVIGvLiGvqIg~G~Ipp 267 (331)
T TIGR00825 188 TILPFMAFVSALIGIIMASGLGDWIAHGLVPLAGNPIGLVILALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGKGTIPP 267 (331)
T ss_pred HhhHHHHHHHHHHHHHhcccHHHHHHhhccccccChHHHHHHHHHHcchhcccccCCceehhhhhhhheeheecCCCCCh
Confidence 44666666777889999999999999999998887653333332 34445544444432233333222221 12
Q ss_pred hHHHHHHHHHhh--cccccccc
Q 040250 315 EFWQLIAYCAST--GGSMLIIG 334 (395)
Q Consensus 315 ~~~~~l~~~~~~--gg~~tpig 334 (395)
.+.+.-.++.|. |.-+-|+|
T Consensus 268 ~lALPALFAIN~Q~~cDFIPVG 289 (331)
T TIGR00825 268 HLALPALFAINAQAACDFIPVG 289 (331)
T ss_pred hhhhhHHHhhcccccCceeccc
Confidence 344555556553 33456766
No 160
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.79 E-value=3.1e+02 Score=26.82 Aligned_cols=119 Identities=22% Similarity=0.220 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHhCCCCh
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSL----VRKLVPPSE 92 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi----~~~l~~~~~ 92 (395)
+-+.+.+.|...++..+.-.|-..|+-+++. .+.+..++.......+++..|++-.-.+.++.|+ +++++.|.-
T Consensus 295 smV~~IllGa~~FSlvF~g~~G~~~ve~~l~~lpgg~igFli~~~~~iF~LgffldffEiafIivPllaPva~~lgIDli 374 (447)
T COG4664 295 SMVLFILLGATVFSLVFYGLNGHAWVEHLLTNLPGGEIGFLIVSNILIFFLGFFLDFFEIAFIIVPLLAPVADKLGIDLI 374 (447)
T ss_pred HHHHHHHHhhHHHHhheeecCchHHHHHHHhcCCCCceeeehHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHH
Confidence 3488999999999999999999999999886 4788899999999999999999987766666555 566665532
Q ss_pred hhHHHHHHHHHHhhhcccc--ccccccchhhhhc--cCCCChHHHHHHhHHHHHH
Q 040250 93 YRKLLGAVVVIAANAGGVW--SPIGDVTTTMLWI--HGQISTLPTMKSLFIPSAV 143 (395)
Q Consensus 93 ~~~~l~~~i~~~an~gg~~--tpiG~~~n~i~~~--~~~isf~~~~~~~~p~~~v 143 (395)
..++..+.|.-.+. .|.|-. --+.-+ ...++-.|-..-+.|...+
T Consensus 375 -----wfGVll~~NlQtSFl~PPfgfs-lfYLrgVAp~~VTt~qIy~G~vPfili 423 (447)
T COG4664 375 -----WFGVLLGVNLQTSFLHPPFGFS-LFYLRGVAPPSVTTGQIYRGAVPFILI 423 (447)
T ss_pred -----HHHHHHHHhhhhhccCCCchhh-HHHhccCCCCCcchhhhhhccccHHHH
Confidence 35677788875433 233311 111111 1145556655555665443
No 161
>COG0700 SpmB Uncharacterized membrane protein [Function unknown]
Probab=32.64 E-value=3.1e+02 Score=23.34 Aligned_cols=126 Identities=10% Similarity=0.085 Sum_probs=68.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcC-----chhHHHHHHHHHHHHhcCHHHHHHHhhhhcccCCCCCh
Q 040250 240 INMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIP-----NIDLIASAIGVVSAVIDNVPLVAATIGMYDLTSLPQDS 314 (395)
Q Consensus 240 v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~-----~~~~~~~~~~~lS~~i~N~p~~~~~~pi~~~~~~~~~~ 314 (395)
+.-+.+-.+..+++..++++.||..||+.+.+.+... +...-.. +-.-+|.......+.-+.. +.++++
T Consensus 30 IA~~i~P~lv~~lv~i~~fr~sGald~v~~~l~pv~s~~G~p~Ea~pv~----l~~p~Sg~gA~Gv~~dl~~--~~g~ds 103 (162)
T COG0700 30 IATTILPYLVAMLVIIAAFRISGALDWVGHILSPVMSLIGLPGEAAPVA----LAKPMSGGGAVGVAADLAT--TYGLDS 103 (162)
T ss_pred ehhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHcCCChhhhHHH----HHhhccCccHHHHHHHHHH--hcCCcc
Confidence 4455788899999999999999999999998887532 1111111 1122233333332222222 233332
Q ss_pred hHHHHHHHHHhhccccccccchhhHHHhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 315 EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEK-VDFFWYFRKVSGFAFAGYAAGIAAYLAVN 375 (395)
Q Consensus 315 ~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~-~~~~~~~k~g~p~~lv~~~~~~~~~~~~~ 375 (395)
-. ....+...|+.-|+.=... ..++.-+ -+.+++++.++-..+++.+.++.+-++++
T Consensus 104 ~~--~~vaa~~~gstettfyvl~--vyfG~vgik~~~~al~~~l~advig~i~ai~V~~l~f 161 (162)
T COG0700 104 FI--GTVAAPAQGSTETTFYVLG--VYFGAVGIKKIRKALPVGLTADVIGAIAAIWVMQLFF 161 (162)
T ss_pred hh--HHHHHHHhcccCCeEEEEE--EEEehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 1111222333333321100 0112223 44688999999999999888887766654
No 162
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=30.36 E-value=17 Score=29.06 Aligned_cols=11 Identities=55% Similarity=0.887 Sum_probs=8.5
Q ss_pred ccccccccccc
Q 040250 384 TLAQAPIQCSL 394 (395)
Q Consensus 384 ~~~~~~~~~~~ 394 (395)
---|||+||++
T Consensus 112 ys~EMPI~c~l 122 (134)
T COG5122 112 YSPEMPIQCSL 122 (134)
T ss_pred CCcccceehhh
Confidence 34589999986
No 163
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=26.89 E-value=4.8e+02 Score=23.62 Aligned_cols=147 Identities=11% Similarity=0.085 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh--c-CCchhHHHHHHHHHHHHHHhh----hh--
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNIT--T-RKPRSLLWVVGFVTFFLSSIL----DN-- 73 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~--~-~~~~~l~~~~~l~~~~lS~~~----~n-- 73 (395)
++.+.++.+.+++-+.=..-++++ .+-+...+|+.|+=++-.+.+. | -+.-+++...+++=-+.+++. ..
T Consensus 38 ~~~~iL~~lG~aFv~nR~mslf~l-~LPvIGllER~GLke~A~~lI~kik~aT~Gril~~Yl~iR~i~aa~gl~~lGGh~ 116 (218)
T PF06149_consen 38 SFVEILETLGKAFVDNRYMSLFIL-TLPVIGLLERYGLKERAANLIGKIKGATAGRILSVYLLIREIAAAFGLTRLGGHA 116 (218)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence 367778888877643322222222 2777889999999999888774 2 244444444333332222221 11
Q ss_pred HHHHHHHHHHHHHh-----CC-CChhhHHHHHHHHHHhhhccccccccccchhhhhc-------------cCCCChHHHH
Q 040250 74 LTTTIVMVSLVRKL-----VP-PSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWI-------------HGQISTLPTM 134 (395)
Q Consensus 74 ~~~~~i~~Pi~~~l-----~~-~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~-------------~~~isf~~~~ 134 (395)
-.+..++.|..+.. ++ +++.+--+=--.+-.-|.|-.. .+|+.++. ..+.+-.+-.
T Consensus 117 QfVRPLi~PMaeaAae~~~g~l~e~~~e~ika~aAA~eN~gnFF-----gqniFva~~gvLLi~gtl~~~G~~v~~~~ia 191 (218)
T PF06149_consen 117 QFVRPLIAPMAEAAAEAKYGELSEKDREKIKAMAAAAENYGNFF-----GQNIFVAAGGVLLIQGTLKELGYEVEPLHIA 191 (218)
T ss_pred ccccchhhhHHHHHHhhccCCCCHhHHHHHHHHHHHHHHHHHHH-----hHHHHHhccceeeeeeeHHhcCccccHHHHH
Confidence 23455778887543 11 1111100001233344554332 35554432 1245567777
Q ss_pred HHhHHHHHHHHHHHHHHHHhh
Q 040250 135 KSLFIPSAVSLAVPLALLSLT 155 (395)
Q Consensus 135 ~~~~p~~~v~~~~~~~~~~~~ 155 (395)
.+..|.+++.+++...-++++
T Consensus 192 ~~~IP~Ai~a~ii~~~~~~~~ 212 (218)
T PF06149_consen 192 LWAIPTAIIAFIIHGIRLYLF 212 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777887777776665555544
No 164
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=24.98 E-value=2e+02 Score=20.73 Aligned_cols=21 Identities=10% Similarity=-0.115 Sum_probs=13.2
Q ss_pred cccchhhhhcc-CCCChHHHHH
Q 040250 115 GDVTTTMLWIH-GQISTLPTMK 135 (395)
Q Consensus 115 G~~~n~i~~~~-~~isf~~~~~ 135 (395)
|.+..-..+.. .|+|..||+.
T Consensus 17 ~~a~A~~~a~~f~GLslneWfy 38 (66)
T PF10746_consen 17 GTAGADVVARYFWGLSLNEWFY 38 (66)
T ss_pred cchhHHHHHHHHcCCCHHHHHH
Confidence 33333344444 6899999985
No 165
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=24.94 E-value=2.8e+02 Score=28.18 Aligned_cols=140 Identities=6% Similarity=-0.033 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHhc-CCchhHHHHHHHHHHHHHHhhhhHHH
Q 040250 3 STEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQ-----GFKLVTDNITT-RKPRSLLWVVGFVTFFLSSILDNLTT 76 (395)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG-----~~~~la~~i~~-~~~~~l~~~~~l~~~~lS~~~~n~~~ 76 (395)
++....+.+.|+.+..+++++-+=.=-=+...|..+| +.+.++++++. .++..+.+..++.++++..|+++-.-
T Consensus 296 tP~~y~~a~~~a~~~~~gIllQFPfYAGImGmm~~sgl~g~sLa~~is~~fvsiat~~TfP~~~flsagivn~FVPSGGG 375 (453)
T PF02667_consen 296 TPRRYLRAVKEAVRSAAGILLQFPFYAGIMGMMTGSGLGGVSLAQVISNFFVSIATPTTFPLFTFLSAGIVNFFVPSGGG 375 (453)
T ss_pred CHHHHHHHHHHHhccccceeeechHHHHHHHHHhhcCCCcchHHHHHHHHHHHhcCCccHHHHHHHHHHHheeEecCCCc
Confidence 4566677777887776654433222222233344455 56688888864 67788888888888888888876532
Q ss_pred -----HHHHHHHHHHhCCCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHH
Q 040250 77 -----TIVMVSLVRKLVPPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVP 148 (395)
Q Consensus 77 -----~~i~~Pi~~~l~~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~ 148 (395)
.-++.|-.++++-+... ..+..+++-....+.-|+=.-|- -...|+..-|.+-|.....++..++.
T Consensus 376 qWaVqgP~~~~Aa~~Lgv~~~~---~~ma~a~Gda~tNmiQPFWaLPl---L~I~GL~aRDImGy~~~~ll~~~~i~ 446 (453)
T PF02667_consen 376 QWAVQGPIVMPAAQALGVDLGK---TVMAYAWGDAWTNMIQPFWALPL---LGIAGLKARDIMGYCVVILLVSGIIV 446 (453)
T ss_pred eEEEecchHHHHHHHhCCCHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 22555666666544322 24556666554443333311111 12346777777776666555444443
No 166
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=24.47 E-value=2.7e+02 Score=28.89 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--CCc-hhHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHH-hCCCChh
Q 040250 19 SEIVFFLLGAMTIVEIVDAHQGFKLVTDNITT--RKP-RSLLWVVGFVTFFLSSILD-NLTTTIVMVSLVRK-LVPPSEY 93 (395)
Q Consensus 19 ~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~--~~~-~~l~~~~~l~~~~lS~~~~-n~~~~~i~~Pi~~~-l~~~~~~ 93 (395)
..+.++++|+=++..++++.+ .+++.+.+.+ ++| +.+ +.+.+.+..+. +++++.+...++.+ +... +.
T Consensus 12 g~v~l~L~g~~~m~~Gv~~~~-G~~lr~~L~~~t~np~~gv-----l~Gi~~T~llQSStatt~lt~gfV~aGl~sl-~~ 84 (533)
T COG1283 12 GAVALLLFGIKMVGDGVQRAA-GDRLRKILARFTSNPILGV-----LAGIVATALLQSSTATTVLTIGFVAAGLLSL-KQ 84 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHhcCCcHHHH-----HHHHHHHHHHHhcchHHHHHHHHHhccccch-hh
Confidence 356677777777777776653 3455555543 233 222 23334455553 44555555555533 2222 11
Q ss_pred hHHHHHHHHHHhhhccccc
Q 040250 94 RKLLGAVVVIAANAGGVWS 112 (395)
Q Consensus 94 ~~~l~~~i~~~an~gg~~t 112 (395)
.+++..+||+|...|
T Consensus 85 ----Ai~vilGANIGTt~T 99 (533)
T COG1283 85 ----AIGVILGANIGTTVT 99 (533)
T ss_pred ----hhhheeccchhHHHH
Confidence 367889999997665
No 167
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=23.10 E-value=2.1e+02 Score=21.94 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhc
Q 040250 244 VPLFFLGILLSVSSLEAAGLMRKIGNYLDAHI 275 (395)
Q Consensus 244 ~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~ 275 (395)
+-+-++.+=.+..++.+||+.+++++.+.+..
T Consensus 56 ~ALSY~lLGafA~aIs~sGl~~~L~~~i~~~~ 87 (88)
T PF13726_consen 56 TALSYILLGAFAVAISKSGLTDILAKKIIKKL 87 (88)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHc
Confidence 34444444455889999999999999988753
No 168
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=21.29 E-value=8.3e+02 Score=24.37 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhhHHHHH
Q 040250 59 VVGFVTFFLSSILDNLTTTI 78 (395)
Q Consensus 59 ~~~l~~~~lS~~~~n~~~~~ 78 (395)
.++.++-+++++.+|....+
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll 105 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLL 105 (394)
T ss_pred HHHHHHHHHHHHhccHHHHH
Confidence 55677778888888887554
No 169
>COG4325 Predicted membrane protein [Function unknown]
Probab=20.68 E-value=5.3e+02 Score=25.66 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=46.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 040250 11 LSRASA-EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRSLLWVVGFVTFFLSS 69 (395)
Q Consensus 11 ~~~~~~-~~~~~i~ll~g~~~i~~~l~~sG~~~~la~~i~~~~~~~l~~~~~l~~~~lS~ 69 (395)
+.+.+. ....+..+.++.++++--+..+|+.-|+-+.+++.++.+..+.+++.+++-|.
T Consensus 82 vL~vvAaSmisVtg~~fSItvvalqlaSsqfsPRll~~fmrd~~nqvvLa~FlctFvysl 141 (464)
T COG4325 82 VLIVVAASMISVTGIVFSITVVALQLASSQFSPRLLRTFLRDVPNQVVLAIFLCTFVYSL 141 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHhhcCchHHHHHHHHHHHHHHH
Confidence 444443 44567888999999999999999999999999999998888877777666543
No 170
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=20.02 E-value=2.3e+02 Score=27.46 Aligned_cols=29 Identities=7% Similarity=0.122 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 040250 20 EIVFFLLGAMTIVEIVDAHQGFKLVTDNI 48 (395)
Q Consensus 20 ~~i~ll~g~~~i~~~l~~sG~~~~la~~i 48 (395)
+.-.=++|++++...++|+|+.||+++-.
T Consensus 210 P~a~pLig~Lm~GnllrEsGv~~rl~~ta 238 (354)
T TIGR01109 210 PKALPLVGMLMFGNLMRESGVVERLSKTA 238 (354)
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34455789999999999999999998765
Done!