Query 040250
Match_columns 395
No_of_seqs 153 out of 1528
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 10:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f35_D Transporter, NADC famil 100.0 8.3E-43 2.8E-47 350.3 27.8 348 12-373 73-446 (449)
2 4f35_D Transporter, NADC famil 99.7 1.4E-16 4.7E-21 159.6 20.7 178 201-389 51-241 (449)
3 3tds_E Formate/nitrite transpo 15.4 5.9E+02 0.02 22.5 9.9 36 229-264 100-135 (268)
4 2j5d_A BNIP3 TM, BCL2/adenovir 8.5 4.2E+02 0.014 16.6 4.6 33 345-377 9-41 (45)
5 4b2v_A S64; toxin, ICK; NMR {S 6.3 1.4E+02 0.0049 16.6 0.4 9 385-393 13-21 (32)
6 2k1a_A Integrin alpha-IIB; sin 5.2 4.2E+02 0.014 16.3 2.2 14 30-43 26-39 (42)
7 2knc_A Integrin alpha-IIB; tra 4.5 4E+02 0.014 17.4 1.9 14 30-43 28-41 (54)
8 2l8s_A Integrin alpha-1; trans 4.3 4E+02 0.014 17.5 1.7 14 30-43 25-38 (54)
9 3kly_A Putative formate transp 3.8 1.9E+03 0.065 19.2 6.5 155 228-382 101-280 (280)
10 3gqu_A NOP5P protein; RNA bind 3.7 9.2E+02 0.031 19.8 3.8 41 5-45 20-60 (169)
No 1
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=100.00 E-value=8.3e-43 Score=350.32 Aligned_cols=348 Identities=17% Similarity=0.141 Sum_probs=254.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHh---cCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 040250 12 SRASAEVS-EIVFFLLGAMTIVEIVDAHQGFKLVTDNIT---TRKPRSLLWVVGFVTFFLSSILDNLTTTIVMVSLVRKL 87 (395)
Q Consensus 12 ~~~~~~~~-~~i~ll~g~~~i~~~l~~sG~~~~la~~i~---~~~~~~l~~~~~l~~~~lS~~~~n~~~~~i~~Pi~~~l 87 (395)
+|++++|. |++++++|+++++++++|+|++||+|.++. |+|++++.+.+++.++++|++++|+++++++.|++..+
T Consensus 73 ~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA~~il~~~g~~~~~l~~~~~~~~~~lS~~isn~a~~~~~~Pi~~~i 152 (449)
T 4f35_D 73 QAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGV 152 (449)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcchHHHHHhchHHHHH
Confidence 45667774 699999999999999999999999999885 57999999999999999999999999999999999775
Q ss_pred C------CCChhhHHHHHHHHHHhhhccccccccccchhhhhccCCCChHHHHHHhHHHHHHHHHHHHHHHHhh-hhccc
Q 040250 88 V------PPSEYRKLLGAVVVIAANAGGVWSPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLALLSLT-SEVNR 160 (395)
Q Consensus 88 ~------~~~~~~~~l~~~i~~~an~gg~~tpiG~~~n~i~~~~~~isf~~~~~~~~p~~~v~~~~~~~~~~~~-~~~~~ 160 (395)
. ++++..+.+++++++++|+||.+||+|+|+|++..+..+++|.||+.+..|+.++..++.+.+.++. ||+.+
T Consensus 153 ~~~~~~~~~~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~~~~~~f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~ 232 (449)
T 4f35_D 153 LSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLN 232 (449)
T ss_dssp SCSCCCSSCCSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhhhhhcccCcCCCcccccccccccHHHhhhhcCchHHHHHHHHHHHHHHHhccccc
Confidence 1 1222234457899999999999999999999999888899999999999999998888887777665 44432
Q ss_pred cccCCcccccccccCCchhHHHHHHH--hHHHH-HHHhh-hhcCCChH--HHHHHHHHHHHHHHHhhhccchhhccCCHH
Q 040250 161 KGQESSNVLASEQMAPRGQLVSTVGT--GALIF-VPVFK-ALTGLPPY--MGILLGLGVLWILTDAIHYGESERQKLKVP 234 (395)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~-~~~~i~~~--~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~ 234 (395)
+.++.+ ++..+.+++++....... ..++. ..... ...+.... .+++.+..++ ... +.+++|
T Consensus 233 ~~~~~~--~~~~~~~~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll-~~~----------~~l~~~ 299 (449)
T 4f35_D 233 GMFELD--RAPVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILML-SFA----------RVVHWK 299 (449)
T ss_dssp -----------CCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHH-HHT----------TSSCHH
T ss_pred ccchhh--ccchhhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHh-hhh----------hccchh
Confidence 221111 111222222222221111 11111 11122 22333332 2333222222 221 347899
Q ss_pred HHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCch--h----HHHHHHHHHHHHhcCHHHHHHHhhhhcc-
Q 040250 235 QALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNI--D----LIASAIGVVSAVIDNVPLVAATIGMYDL- 307 (395)
Q Consensus 235 ~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~--~----~~~~~~~~lS~~i~N~p~~~~~~pi~~~- 307 (395)
|+.+++||+++++++|++.+++++++||+.+|+++.+.+..++. . .+.+++.++|+|+||++++++++|+...
T Consensus 300 ~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~ 379 (449)
T 4f35_D 300 EIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTASAALLIPVFATV 379 (449)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHHHHHHHHHHHHHH
T ss_pred hhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754332 1 2334456678999999999999999853
Q ss_pred -cCCCCCh-hHHHHHHHHHhhccccccccchhhHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 308 -TSLPQDS-EFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKVDFFWYFRKVSGFAFAGYAAGIAAYLA 373 (395)
Q Consensus 308 -~~~~~~~-~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~~~~~~k~g~p~~lv~~~~~~~~~~~ 373 (395)
.+.|.++ ...++.+++++. +++||+|+++|.++++.++++++||+|.|+|.++++.++...+.+.
T Consensus 380 a~~~g~~p~~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~g~~~~~d~~k~G~~~~~~~~~v~~~~~~~ 446 (449)
T 4f35_D 380 AEAFGMSPVLLSVLIAVAASC-AFMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAML 446 (449)
T ss_dssp HHHTTCCSHHHHHHHHHHHHC-CCSSSSSSHHHHHHCSSGGGGTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHH-HhHhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445443 344566667765 5899999999999999999999999999999999988777665544
No 2
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=99.73 E-value=1.4e-16 Score=159.56 Aligned_cols=178 Identities=17% Similarity=0.146 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHHHHHHHHhhhccchhhccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhcCchh-
Q 040250 201 LPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRKIGNYLDAHIPNID- 279 (395)
Q Consensus 201 i~~~~~a~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~~~~~~~- 279 (395)
+|....++++..++.+.+ ..+.+|+.+++++++++++.|+|.++.++++||+.+++|.++.+..++..
T Consensus 51 iP~~vtall~~~l~~l~g-----------v~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA~~il~~~g~~~~ 119 (449)
T 4f35_D 51 LHVTVTAILVPVMAVFFG-----------IFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIADKVLAMAQGKMS 119 (449)
T ss_dssp SCSHHHHHHHHHHHHHTT-----------SSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCSCTH
T ss_pred ccHHHHHHHHHHHHHHHC-----------CCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHhCCCHH
Confidence 677677777776655543 36889999999999999999999999999999999999999999876542
Q ss_pred ----HHHHHHHHHHHHhcCHHHHHHHhhhhcc--cCCCCC------hhHHHHHHHHHhhccccccccchhhHHHhccccc
Q 040250 280 ----LIASAIGVVSAVIDNVPLVAATIGMYDL--TSLPQD------SEFWQLIAYCASTGGSMLIIGSAAGVAFMGMEKV 347 (395)
Q Consensus 280 ----~~~~~~~~lS~~i~N~p~~~~~~pi~~~--~~~~~~------~~~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~ 347 (395)
.++..++++|.++||++.++++.|+... .+.+.+ .......++++++||..||+|+++|.+..+..++
T Consensus 120 ~l~~~~~~~~~~lS~~isn~a~~~~~~Pi~~~i~~~~~~~~~~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~~~~~ 199 (449)
T 4f35_D 120 VAVFMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQRSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAAEVGL 199 (449)
T ss_dssp HHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHSCSCCCSSCCSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHhchHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhhcccCcCCCcccccccccc
Confidence 3567789999999999999999999852 233221 2466888999999999999999999998888899
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 040250 348 DFFWYFRKVSGFAFAGYAAGIAAYLAVNSLHFSLRATLAQAP 389 (395)
Q Consensus 348 ~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (395)
+|.||++++.|..++..++.+.+.+.+++...+...+..|.|
T Consensus 200 ~f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (449)
T 4f35_D 200 SFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFELDRAP 241 (449)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred cHHHhhhhcCchHHHHHHHHHHHHHHHhcccccccchhhccc
Confidence 999999999999999999988888887776666555544433
No 3
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=15.41 E-value=5.9e+02 Score=22.51 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=24.3
Q ss_pred ccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHH
Q 040250 229 QKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLM 264 (395)
Q Consensus 229 ~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~ 264 (395)
++.++++.++.--+-.+.=+.|...++..+..+|..
T Consensus 100 ~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~ 135 (268)
T 3tds_E 100 KGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLV 135 (268)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 346888888765555555567777777767777764
No 4
>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A
Probab=8.53 E-value=4.2e+02 Score=16.64 Aligned_cols=33 Identities=3% Similarity=-0.139 Sum_probs=25.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040250 345 EKVDFFWYFRKVSGFAFAGYAAGIAAYLAVNSL 377 (395)
Q Consensus 345 ~~~~~~~~~k~g~p~~lv~~~~~~~~~~~~~~~ 377 (395)
+++-..||+|.-.|..+.+=++.+.+..-+.++
T Consensus 9 ggi~sa~flk~~~psll~shiL~~GlgIyIGkR 41 (45)
T 2j5d_A 9 GGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRR 41 (45)
T ss_dssp CSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeehHHHHHHhhHHHHHHHHHhcceEEeeee
Confidence 346779999999999999888887766555544
No 5
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=6.30 E-value=1.4e+02 Score=16.58 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=6.2
Q ss_pred ccccccccc
Q 040250 385 LAQAPIQCS 393 (395)
Q Consensus 385 ~~~~~~~~~ 393 (395)
-+.|-|||-
T Consensus 13 pekmgdwcc 21 (32)
T 4b2v_A 13 PEKMGDWCC 21 (32)
T ss_dssp TTTTCCCCS
T ss_pred hHHhcchhh
Confidence 467778873
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=5.17 E-value=4.2e+02 Score=16.33 Aligned_cols=14 Identities=21% Similarity=-0.050 Sum_probs=10.2
Q ss_pred HHHHHHHhcCcHHH
Q 040250 30 TIVEIVDAHQGFKL 43 (395)
Q Consensus 30 ~i~~~l~~sG~~~~ 43 (395)
.+...+-|.|+|+|
T Consensus 26 li~~~LwK~GFFkR 39 (42)
T 2k1a_A 26 ILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHTTTTCC
T ss_pred HHHHHHHHcCcccC
Confidence 45567889998864
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=4.53 E-value=4e+02 Score=17.44 Aligned_cols=14 Identities=21% Similarity=-0.050 Sum_probs=9.9
Q ss_pred HHHHHHHhcCcHHH
Q 040250 30 TIVEIVDAHQGFKL 43 (395)
Q Consensus 30 ~i~~~l~~sG~~~~ 43 (395)
++...+-|.|+|+|
T Consensus 28 li~~~LwK~GFFkR 41 (54)
T 2knc_A 28 ILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcccC
Confidence 45567778888865
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=4.28 E-value=4e+02 Score=17.47 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=9.7
Q ss_pred HHHHHHHhcCcHHH
Q 040250 30 TIVEIVDAHQGFKL 43 (395)
Q Consensus 30 ~i~~~l~~sG~~~~ 43 (395)
++...+-|.|+|+|
T Consensus 25 Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 25 LLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCcccC
Confidence 45567778888764
No 9
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=3.80 E-value=1.9e+03 Score=19.20 Aligned_cols=155 Identities=10% Similarity=-0.011 Sum_probs=0.0
Q ss_pred hccCCHHHHhcccCchHHHHHHHHHHHHHHHHHhCHHHH----HHHHHHhhcCchhHHHHHHHHHHHHhcCHHHHHHHhh
Q 040250 228 RQKLKVPQALSRINMQVPLFFLGILLSVSSLEAAGLMRK----IGNYLDAHIPNIDLIASAIGVVSAVIDNVPLVAATIG 303 (395)
Q Consensus 228 ~~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l~~tG~~~~----la~~l~~~~~~~~~~~~~~~~lS~~i~N~p~~~~~~p 303 (395)
+++.++++.+|.--+-.+-=+.|...++.-+..+|..+. ..+.+.+......-.-+...++..+..|.-++....-
T Consensus 101 ~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~ 180 (280)
T 3kly_A 101 SGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWM 180 (280)
T ss_dssp SSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcc-cCCCCChhHHHHHHHHHhhccccccccchhhHHHhcc-------------------ccccHHHHHH-HHHHHHHH
Q 040250 304 MYDL-TSLPQDSEFWQLIAYCASTGGSMLIIGSAAGVAFMGM-------------------EKVDFFWYFR-KVSGFAFA 362 (395)
Q Consensus 304 i~~~-~~~~~~~~~~~~l~~~~~~gg~~tpigs~an~i~~~~-------------------~~~~~~~~~k-~g~p~~lv 362 (395)
-... ...+.--..|+.+..-+..|=--......--.+..-. .++++.||+. .-+|.++=
T Consensus 181 ~~~ak~~~gKi~~i~~pi~~Fv~~GfEH~VANm~~ip~gi~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~NlipvtlG 260 (280)
T 3kly_A 181 TFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLG 260 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCCHHHHHHHTCCGGGGTTCSHHHHHHHTHHHHHHH
T ss_pred HhhccchhhHHHHHHHHHHHHHHccchHHHhhHHHHHHHHHhccccchHHHHhhcccccccCCccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 040250 363 GYAAGIAAYLAVNSLHFSLR 382 (395)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~ 382 (395)
..+=+.+..-..+...+++.
T Consensus 261 NiiGG~~fvgl~y~~~~~~~ 280 (280)
T 3kly_A 261 NIVGGGVFVGMWYWLIYLKD 280 (280)
T ss_dssp HHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhhcCC
No 10
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=3.67 E-value=9.2e+02 Score=19.75 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 040250 5 EIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVT 45 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la 45 (395)
|+..+++++-...+.+.+--++|-.+-+..+..+|-+..++
T Consensus 20 ~~L~~Yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL~~LA 60 (169)
T 3gqu_A 20 GGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELA 60 (169)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHhChHHHHHHHHHhCCHHHHh
Done!