Query 040250
Match_columns 395
No_of_seqs 153 out of 1528
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 10:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040250.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040250hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ozbb1 a.183.1.1 (B:85-333) U 6.8 3.1E+02 0.022 22.0 5.3 42 5-46 118-159 (249)
2 d1pv7a_ f.38.1.2 (A:) Lactose 6.3 5.6E+02 0.041 19.9 7.7 11 65-75 303-313 (417)
3 d1nt2b_ a.183.1.1 (B:) Nop5p { 4.6 3.9E+02 0.028 21.5 4.5 42 5-46 125-166 (256)
4 d2oara1 f.16.1.1 (A:10-118) Ga 3.8 2.5E+02 0.019 19.4 2.4 23 128-150 58-80 (109)
5 d1hssa_ a.52.1.2 (A:) 0.19 alp 3.0 1.4E+02 0.01 21.4 0.2 8 385-392 41-48 (120)
6 d1f08a_ d.89.1.2 (A:) Replicat 2.6 2.3E+02 0.017 20.9 1.0 7 385-391 134-140 (148)
7 d1wz3a1 d.15.1.7 (A:10-93) Aut 2.4 2.6E+02 0.019 18.5 0.9 15 1-15 54-68 (84)
8 d1kqfb2 f.23.22.1 (B:246-290) 2.3 6.2E+02 0.046 14.3 3.3 25 349-373 8-32 (45)
9 d1r9wa_ d.89.1.2 (A:) Replicat 2.2 2.3E+02 0.016 20.9 0.5 20 372-391 117-137 (145)
10 d1kf6c_ f.21.2.2 (C:) Fumarate 2.1 4.2E+02 0.031 18.9 1.8 28 242-269 37-65 (130)
No 1
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.79 E-value=3.1e+02 Score=22.01 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 040250 5 EIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTD 46 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~ 46 (395)
++..+++.+-...+.|.+--++|..+-+..+.++|-++.+|+
T Consensus 118 ~~l~~yi~~rm~~iAPNl~aLvG~~~aArLi~~AGgL~~LAk 159 (249)
T d2ozbb1 118 HRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSK 159 (249)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHT
T ss_pred HHHHHHHHHHHHhhCccHHHHHCchHHHHHHHHhCCHHHHHh
Confidence 456667777777888999999999999999999999998885
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.30 E-value=5.6e+02 Score=19.94 Aligned_cols=11 Identities=18% Similarity=0.009 Sum_probs=4.9
Q ss_pred HHHHHhhhhHH
Q 040250 65 FFLSSILDNLT 75 (395)
Q Consensus 65 ~~lS~~~~n~~ 75 (395)
.++..+.+|..
T Consensus 303 ~~~~~~~~~~~ 313 (417)
T d1pv7a_ 303 IIGSSFATSAL 313 (417)
T ss_dssp HHHHHTCCCHH
T ss_pred hhccccccccc
Confidence 33444445543
No 3
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.61 E-value=3.9e+02 Score=21.49 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 040250 5 EIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTD 46 (395)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~ll~g~~~i~~~l~~sG~~~~la~ 46 (395)
++..+++.+-...+.|.+--++|-.+-+..+..+|-.+.+|+
T Consensus 125 ~~l~~yi~~rm~~iAPNLsaLvG~~laArLis~AGgL~~LAk 166 (256)
T d1nt2b_ 125 RDVEREIEEVMEKIAPNMTELVGAKVAAKLLERAGSMERLVR 166 (256)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHCSHHHHHT
T ss_pred HHHHHHHHHHHHHHCchHHHHhChHHHHHHHHHhCCHHHHhh
Confidence 455667777777888999999999999999999999999985
No 4
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.81 E-value=2.5e+02 Score=19.39 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=11.0
Q ss_pred CChHHHHHHhHHHHHHHHHHHHH
Q 040250 128 ISTLPTMKSLFIPSAVSLAVPLA 150 (395)
Q Consensus 128 isf~~~~~~~~p~~~v~~~~~~~ 150 (395)
+.+..|+....=..++.++++++
T Consensus 58 i~~G~fi~a~InFlIiA~vv~F~ 80 (109)
T d2oara1 58 IDLNVLLSAAINFFLIAFAVYFL 80 (109)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665444333444434333
No 5
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=3.04 E-value=1.4e+02 Score=21.36 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=5.0
Q ss_pred cccccccc
Q 040250 385 LAQAPIQC 392 (395)
Q Consensus 385 ~~~~~~~~ 392 (395)
|+++|+||
T Consensus 41 La~i~~~C 48 (120)
T d1hssa_ 41 LAHISEWC 48 (120)
T ss_dssp HHTSCTTT
T ss_pred HHhcCccc
Confidence 56666666
No 6
>d1f08a_ d.89.1.2 (A:) Replication initiation protein E1 {Bovine papillomavirus [TaxId: 10571]}
Probab=2.59 E-value=2.3e+02 Score=20.89 Aligned_cols=7 Identities=14% Similarity=-0.026 Sum_probs=3.4
Q ss_pred ccccccc
Q 040250 385 LAQAPIQ 391 (395)
Q Consensus 385 ~~~~~~~ 391 (395)
-|++|||
T Consensus 134 ~G~~PeW 140 (148)
T d1f08a_ 134 HGALPEW 140 (148)
T ss_dssp EECCCHH
T ss_pred ECCCcHH
Confidence 4444444
No 7
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.39 E-value=2.6e+02 Score=18.46 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=10.8
Q ss_pred CCChHHHHHHHHHHH
Q 040250 1 APSTEIAVSELSRAS 15 (395)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (395)
+|++||....+-+.+
T Consensus 54 aPspDe~vg~Ly~~f 68 (84)
T d1wz3a1 54 SPNPDESVIDLYNNF 68 (84)
T ss_dssp CCCTTSBHHHHHHHH
T ss_pred CCChhhHHHHHHHhc
Confidence 688888777776654
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.32 E-value=6.2e+02 Score=14.33 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040250 349 FFWYFRKVSGFAFAGYAAGIAAYLA 373 (395)
Q Consensus 349 ~~~~~k~g~p~~lv~~~~~~~~~~~ 373 (395)
+++.+|.--...+...+++.+.+|.
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
No 9
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=2.25 E-value=2.3e+02 Score=20.88 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHhhccccccc-ccccccc
Q 040250 372 LAVNSLHFSLRAT-LAQAPIQ 391 (395)
Q Consensus 372 ~~~~~~~~~~~~~-~~~~~~~ 391 (395)
+++++...+...+ -|++|||
T Consensus 117 LfwyK~s~s~~~~~~G~~PeW 137 (145)
T d1r9wa_ 117 LYWYRTGISNISEVMGDTPEW 137 (145)
T ss_dssp HHHHHHHHSTTSEEEECCCHH
T ss_pred eeeeeccccCCceEECCCcHH
No 10
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=2.09 E-value=4.2e+02 Score=18.88 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHH-hCHHHHHHH
Q 040250 242 MQVPLFFLGILLSVSSLEA-AGLMRKIGN 269 (395)
Q Consensus 242 w~~l~~~~g~~~l~~~l~~-tG~~~~la~ 269 (395)
|-.+.++.|++.+.++-+. .|..+.+.+
T Consensus 37 ~f~lvLl~Gl~~L~~g~~aw~~fv~flqn 65 (130)
T d1kf6c_ 37 WFSIELIFGLFALKNGPEAWAGFVDFLQN 65 (130)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhC
Done!