Query 040252
Match_columns 213
No_of_seqs 146 out of 1736
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034 Ca2+/calmodulin-depend 100.0 1.7E-26 3.7E-31 172.1 18.9 179 1-190 1-186 (187)
2 COG5126 FRQ1 Ca2+-binding prot 100.0 1.2E-26 2.5E-31 167.5 16.4 151 21-182 8-159 (160)
3 KOG0044 Ca2+ sensor (EF-Hand s 100.0 1.7E-26 3.7E-31 172.2 17.4 179 1-189 1-185 (193)
4 KOG0027 Calmodulin and related 99.9 8.1E-22 1.8E-26 144.3 16.1 143 27-179 2-149 (151)
5 PTZ00183 centrin; Provisional 99.9 7.7E-21 1.7E-25 139.9 16.9 148 25-182 9-157 (158)
6 KOG0038 Ca2+-binding kinase in 99.9 1.6E-20 3.5E-25 130.9 14.3 180 1-188 1-186 (189)
7 PTZ00184 calmodulin; Provision 99.8 1.5E-19 3.2E-24 131.6 17.0 144 26-179 4-148 (149)
8 KOG0028 Ca2+-binding protein ( 99.8 1.5E-19 3.1E-24 128.1 15.1 148 23-180 23-171 (172)
9 KOG0037 Ca2+-binding protein, 99.8 2.6E-17 5.6E-22 122.8 12.5 158 32-206 56-218 (221)
10 KOG0031 Myosin regulatory ligh 99.7 2E-16 4.3E-21 111.5 15.7 139 26-178 25-164 (171)
11 KOG0030 Myosin essential light 99.7 3.8E-15 8.3E-20 103.3 12.9 143 26-179 4-151 (152)
12 KOG0036 Predicted mitochondria 99.7 3.2E-15 7E-20 120.8 14.3 139 27-181 8-148 (463)
13 PF13499 EF-hand_7: EF-hand do 99.4 3.4E-13 7.4E-18 84.6 6.9 66 108-177 1-66 (66)
14 PLN02964 phosphatidylserine de 99.4 2.3E-12 5E-17 112.3 12.8 117 12-135 120-243 (644)
15 KOG0037 Ca2+-binding protein, 99.3 6.6E-11 1.4E-15 88.7 11.6 140 14-178 75-219 (221)
16 KOG4223 Reticulocalbin, calume 99.3 9.2E-11 2E-15 92.7 11.4 141 33-182 77-231 (325)
17 cd05022 S-100A13 S-100A13: S-1 99.3 2.1E-11 4.5E-16 80.6 6.5 67 107-181 8-77 (89)
18 KOG0027 Calmodulin and related 99.2 1E-10 2.2E-15 85.5 10.7 106 70-180 8-114 (151)
19 PTZ00183 centrin; Provisional 99.2 1.3E-10 2.7E-15 85.3 11.2 125 71-203 18-149 (158)
20 PTZ00184 calmodulin; Provision 99.2 7.8E-11 1.7E-15 85.4 9.2 101 71-179 12-112 (149)
21 KOG0377 Protein serine/threoni 99.2 2.2E-10 4.8E-15 93.8 11.0 138 33-179 464-615 (631)
22 KOG4223 Reticulocalbin, calume 99.2 1.4E-10 3.1E-15 91.6 9.1 137 29-175 159-301 (325)
23 cd05027 S-100B S-100B: S-100B 99.1 2.3E-10 4.9E-15 75.7 7.3 65 107-179 8-79 (88)
24 COG5126 FRQ1 Ca2+-binding prot 99.1 2.7E-09 5.9E-14 77.5 11.5 101 70-179 20-120 (160)
25 KOG0044 Ca2+ sensor (EF-Hand s 99.0 1.3E-09 2.8E-14 81.8 8.5 118 16-135 47-175 (193)
26 cd05026 S-100Z S-100Z: S-100Z 99.0 1.4E-09 3.1E-14 72.7 7.2 71 107-181 10-83 (93)
27 cd05031 S-100A10_like S-100A10 99.0 1.5E-09 3.2E-14 72.9 6.9 72 106-181 7-81 (94)
28 smart00027 EH Eps15 homology d 99.0 2.9E-09 6.3E-14 71.7 7.7 85 105-205 8-92 (96)
29 KOG2562 Protein phosphatase 2 99.0 1E-08 2.3E-13 84.7 12.1 146 25-175 270-420 (493)
30 cd05029 S-100A6 S-100A6: S-100 99.0 2.3E-09 5E-14 70.8 6.6 68 108-180 11-80 (88)
31 cd05025 S-100A1 S-100A1: S-100 99.0 3.8E-09 8.1E-14 70.6 7.4 74 106-184 8-85 (92)
32 PF13499 EF-hand_7: EF-hand do 98.9 4.2E-09 9.1E-14 65.8 7.0 61 34-96 1-66 (66)
33 cd00052 EH Eps15 homology doma 98.9 6.3E-09 1.4E-13 65.0 6.4 62 110-181 2-63 (67)
34 smart00027 EH Eps15 homology d 98.9 2.1E-08 4.5E-13 67.6 9.0 71 26-99 3-73 (96)
35 PF13833 EF-hand_8: EF-hand do 98.9 8.3E-09 1.8E-13 61.8 6.0 52 120-179 1-53 (54)
36 cd00213 S-100 S-100: S-100 dom 98.9 9.3E-09 2E-13 68.1 6.6 70 107-180 8-80 (88)
37 cd05022 S-100A13 S-100A13: S-1 98.8 2.6E-08 5.6E-13 65.8 8.2 68 30-99 5-76 (89)
38 PLN02964 phosphatidylserine de 98.8 4.3E-08 9.3E-13 86.0 11.6 99 70-180 143-244 (644)
39 KOG0036 Predicted mitochondria 98.8 4.8E-08 1.1E-12 79.8 10.9 128 69-209 13-147 (463)
40 cd00252 SPARC_EC SPARC_EC; ext 98.8 1.4E-08 3E-13 70.4 6.6 64 104-179 45-108 (116)
41 KOG0028 Ca2+-binding protein ( 98.8 9E-08 1.9E-12 68.5 10.7 103 70-180 33-135 (172)
42 KOG0034 Ca2+/calmodulin-depend 98.8 3.8E-08 8.2E-13 73.8 8.8 95 39-135 72-175 (187)
43 cd05023 S-100A11 S-100A11: S-1 98.8 2.9E-08 6.2E-13 65.8 7.2 70 107-180 9-81 (89)
44 KOG0040 Ca2+-binding actin-bun 98.8 2.1E-07 4.5E-12 86.1 14.4 145 21-179 2241-2398(2399)
45 cd05026 S-100Z S-100Z: S-100Z 98.8 7E-08 1.5E-12 64.5 8.7 68 31-100 8-83 (93)
46 cd00051 EFh EF-hand, calcium b 98.8 3.6E-08 7.8E-13 59.9 6.9 61 109-177 2-62 (63)
47 KOG4666 Predicted phosphate ac 98.8 2E-08 4.3E-13 79.6 6.9 157 17-186 210-366 (412)
48 cd05027 S-100B S-100B: S-100B 98.7 1.8E-07 3.9E-12 61.8 8.5 68 30-99 5-80 (88)
49 cd00213 S-100 S-100: S-100 dom 98.7 2.1E-07 4.5E-12 61.6 8.1 69 29-99 4-80 (88)
50 PF14658 EF-hand_9: EF-hand do 98.6 1.5E-07 3.2E-12 57.8 6.5 61 111-179 2-64 (66)
51 cd00052 EH Eps15 homology doma 98.6 1.7E-07 3.6E-12 58.4 7.0 60 36-98 2-61 (67)
52 KOG2643 Ca2+ binding protein, 98.6 2.5E-07 5.4E-12 76.2 9.5 130 35-179 320-453 (489)
53 cd05029 S-100A6 S-100A6: S-100 98.6 4.5E-07 9.7E-12 59.9 8.6 69 29-99 6-80 (88)
54 cd05023 S-100A11 S-100A11: S-1 98.6 5.1E-07 1.1E-11 59.7 8.3 68 30-99 6-81 (89)
55 cd05030 calgranulins Calgranul 98.6 2.1E-07 4.6E-12 61.6 6.4 67 107-180 8-80 (88)
56 cd05025 S-100A1 S-100A1: S-100 98.6 4.9E-07 1.1E-11 60.3 7.9 67 32-100 8-82 (92)
57 cd05031 S-100A10_like S-100A10 98.6 6.8E-07 1.5E-11 59.9 8.4 65 32-98 7-79 (94)
58 KOG4251 Calcium binding protei 98.5 3.3E-07 7.1E-12 70.2 6.6 136 33-178 101-263 (362)
59 cd00051 EFh EF-hand, calcium b 98.5 8.9E-07 1.9E-11 53.6 6.6 59 73-132 3-61 (63)
60 PF00036 EF-hand_1: EF hand; 98.4 1.5E-07 3.3E-12 48.5 2.4 27 109-135 2-28 (29)
61 KOG0041 Predicted Ca2+-binding 98.4 2.5E-06 5.4E-11 63.5 9.3 114 18-133 84-201 (244)
62 PF13833 EF-hand_8: EF-hand do 98.4 1.1E-06 2.5E-11 52.4 5.4 48 49-96 2-51 (54)
63 cd00252 SPARC_EC SPARC_EC; ext 98.4 3.1E-06 6.6E-11 58.7 8.1 57 72-133 50-106 (116)
64 cd05030 calgranulins Calgranul 98.4 3.7E-06 8E-11 55.6 8.0 70 30-99 5-80 (88)
65 KOG0751 Mitochondrial aspartat 98.3 1.5E-05 3.3E-10 66.8 12.7 109 23-136 26-137 (694)
66 cd05024 S-100A10 S-100A10: A s 98.3 8.8E-06 1.9E-10 53.6 8.7 68 30-100 5-78 (91)
67 KOG0030 Myosin essential light 98.2 2.2E-05 4.7E-10 55.2 9.7 106 69-180 10-117 (152)
68 PF12763 EF-hand_4: Cytoskelet 98.2 5.5E-06 1.2E-10 56.3 6.0 70 26-99 3-72 (104)
69 KOG2643 Ca2+ binding protein, 98.2 8.2E-06 1.8E-10 67.4 7.6 27 154-180 321-347 (489)
70 cd05024 S-100A10 S-100A10: A s 98.1 2.4E-05 5.2E-10 51.5 7.5 68 108-180 9-77 (91)
71 PF00036 EF-hand_1: EF hand; 98.1 6.4E-06 1.4E-10 42.4 3.6 27 72-98 2-28 (29)
72 PF13405 EF-hand_6: EF-hand do 98.1 2.9E-06 6.2E-11 44.5 2.3 27 108-134 1-27 (31)
73 KOG0041 Predicted Ca2+-binding 98.1 1.3E-05 2.7E-10 59.8 6.1 66 106-179 98-163 (244)
74 KOG4251 Calcium binding protei 98.0 1.5E-05 3.1E-10 61.3 6.1 139 38-178 145-308 (362)
75 KOG0031 Myosin regulatory ligh 98.0 8E-05 1.7E-09 53.3 8.8 99 70-180 32-130 (171)
76 PF13202 EF-hand_5: EF hand; P 97.9 9.4E-06 2E-10 40.3 2.2 23 110-132 2-24 (25)
77 PF14658 EF-hand_9: EF-hand do 97.9 4.7E-05 1E-09 46.9 5.7 59 38-98 3-64 (66)
78 PRK12309 transaldolase/EF-hand 97.8 6.7E-05 1.4E-09 62.8 7.3 57 102-179 329-385 (391)
79 PF12763 EF-hand_4: Cytoskelet 97.8 0.00027 5.9E-09 48.0 8.1 67 103-180 6-72 (104)
80 KOG0038 Ca2+-binding kinase in 97.7 0.00017 3.6E-09 51.2 6.4 97 34-135 75-177 (189)
81 KOG4065 Uncharacterized conser 97.7 0.00031 6.7E-09 47.8 7.1 67 110-176 70-142 (144)
82 KOG1029 Endocytic adaptor prot 97.7 0.0009 2E-08 59.3 11.8 166 25-206 8-284 (1118)
83 PRK12309 transaldolase/EF-hand 97.6 0.00015 3.2E-09 60.8 6.6 54 69-136 333-386 (391)
84 PF13202 EF-hand_5: EF hand; P 97.6 9E-05 1.9E-09 36.7 3.0 24 154-177 2-25 (25)
85 KOG0169 Phosphoinositide-speci 97.5 0.0029 6.2E-08 56.2 13.2 145 27-180 130-275 (746)
86 KOG0046 Ca2+-binding actin-bun 97.5 0.00042 9E-09 58.9 7.7 76 22-100 8-87 (627)
87 KOG0377 Protein serine/threoni 97.5 0.00033 7.1E-09 58.4 6.5 65 72-136 549-616 (631)
88 PF14788 EF-hand_10: EF hand; 97.4 0.00047 1E-08 40.0 5.0 49 123-179 1-49 (51)
89 KOG0751 Mitochondrial aspartat 97.4 0.00071 1.5E-08 57.2 7.4 88 48-136 87-208 (694)
90 PF10591 SPARC_Ca_bdg: Secrete 97.3 6.5E-05 1.4E-09 52.0 0.1 63 103-175 50-112 (113)
91 KOG0040 Ca2+-binding actin-bun 97.2 0.0027 5.9E-08 60.1 10.0 98 71-175 2254-2357(2399)
92 PF14788 EF-hand_10: EF hand; 97.1 0.0022 4.8E-08 37.3 5.5 45 52-96 2-47 (51)
93 KOG4347 GTPase-activating prot 97.1 0.0015 3.2E-08 56.9 6.9 112 16-129 487-612 (671)
94 PF13405 EF-hand_6: EF-hand do 97.1 0.0011 2.4E-08 34.5 3.6 24 73-96 3-26 (31)
95 KOG2562 Protein phosphatase 2 96.9 0.0072 1.6E-07 50.8 8.5 130 35-178 227-378 (493)
96 PF10591 SPARC_Ca_bdg: Secrete 96.9 0.0015 3.2E-08 45.2 3.9 62 67-131 51-112 (113)
97 KOG0046 Ca2+-binding actin-bun 96.8 0.0037 8.1E-08 53.3 6.6 65 108-178 20-84 (627)
98 PF09279 EF-hand_like: Phospho 96.8 0.0061 1.3E-07 39.5 5.9 70 109-181 2-71 (83)
99 smart00054 EFh EF-hand, calciu 96.6 0.0015 3.3E-08 32.3 1.8 26 109-134 2-27 (29)
100 PF09069 EF-hand_3: EF-hand; 96.5 0.015 3.3E-07 38.2 6.4 79 106-187 2-83 (90)
101 smart00054 EFh EF-hand, calciu 96.2 0.0091 2E-07 29.3 3.5 26 154-179 3-28 (29)
102 KOG4065 Uncharacterized conser 96.0 0.039 8.4E-07 37.7 6.6 68 24-95 60-142 (144)
103 PLN02952 phosphoinositide phos 95.9 0.082 1.8E-06 46.8 9.9 95 83-180 13-111 (599)
104 KOG4578 Uncharacterized conser 95.8 0.0056 1.2E-07 49.3 2.1 71 107-184 333-403 (421)
105 PF09068 EF-hand_2: EF hand; 94.9 0.19 4.1E-06 35.5 7.2 98 18-134 26-124 (127)
106 KOG0039 Ferric reductase, NADH 94.8 0.069 1.5E-06 48.1 5.9 95 84-186 2-96 (646)
107 KOG4666 Predicted phosphate ac 94.7 0.1 2.2E-06 42.2 6.1 98 33-134 259-358 (412)
108 KOG0035 Ca2+-binding actin-bun 94.5 0.2 4.3E-06 46.0 8.0 107 22-131 736-848 (890)
109 KOG3555 Ca2+-binding proteogly 94.2 0.081 1.8E-06 43.1 4.5 64 105-180 248-311 (434)
110 PF09279 EF-hand_like: Phospho 94.1 0.13 2.9E-06 33.1 4.7 60 73-133 3-67 (83)
111 KOG1029 Endocytic adaptor prot 93.3 0.19 4.1E-06 45.3 5.5 72 24-98 186-257 (1118)
112 KOG4578 Uncharacterized conser 93.3 0.065 1.4E-06 43.4 2.4 64 72-135 335-398 (421)
113 KOG0998 Synaptic vesicle prote 93.1 0.071 1.5E-06 49.4 2.7 142 26-181 122-347 (847)
114 KOG1955 Ral-GTPase effector RA 92.9 0.37 8E-06 41.3 6.4 77 21-100 219-295 (737)
115 KOG3555 Ca2+-binding proteogly 92.9 0.19 4.2E-06 41.0 4.5 104 25-135 199-310 (434)
116 PF05042 Caleosin: Caleosin re 92.4 0.58 1.2E-05 34.6 6.1 38 152-189 97-134 (174)
117 KOG0169 Phosphoinositide-speci 92.3 1 2.3E-05 40.6 8.6 67 69-136 135-201 (746)
118 KOG1707 Predicted Ras related/ 92.0 0.92 2E-05 39.9 7.9 156 22-184 184-348 (625)
119 KOG3866 DNA-binding protein of 91.8 0.92 2E-05 36.7 7.0 92 88-179 225-324 (442)
120 KOG4286 Dystrophin-like protei 91.5 4.5 9.7E-05 36.8 11.5 159 18-186 405-587 (966)
121 PF05517 p25-alpha: p25-alpha 90.6 1.8 3.8E-05 31.6 7.2 65 33-99 2-70 (154)
122 PF05042 Caleosin: Caleosin re 90.6 2.3 4.9E-05 31.5 7.7 70 105-177 94-164 (174)
123 KOG0042 Glycerol-3-phosphate d 90.6 0.71 1.5E-05 40.4 5.7 79 21-101 581-660 (680)
124 KOG2243 Ca2+ release channel ( 90.3 0.56 1.2E-05 45.2 5.2 58 112-178 4062-4119(5019)
125 PF08414 NADPH_Ox: Respiratory 90.1 0.69 1.5E-05 30.8 4.2 66 29-100 26-94 (100)
126 KOG1265 Phospholipase C [Lipid 89.5 2.6 5.7E-05 39.0 8.6 123 48-180 161-300 (1189)
127 KOG4347 GTPase-activating prot 88.1 1.2 2.6E-05 39.5 5.4 78 87-173 535-612 (671)
128 KOG1955 Ral-GTPase effector RA 87.8 1.6 3.4E-05 37.7 5.7 59 109-177 233-291 (737)
129 KOG4301 Beta-dystrobrevin [Cyt 87.6 4.7 0.0001 33.2 8.1 158 18-182 41-218 (434)
130 KOG0042 Glycerol-3-phosphate d 87.2 1.1 2.4E-05 39.3 4.6 64 108-179 594-657 (680)
131 PF14513 DAG_kinase_N: Diacylg 86.8 0.82 1.8E-05 32.7 3.1 66 13-82 8-81 (138)
132 PF05517 p25-alpha: p25-alpha 86.6 3.4 7.4E-05 30.1 6.4 59 115-178 10-68 (154)
133 KOG3866 DNA-binding protein of 83.4 5.8 0.00013 32.3 6.7 102 28-136 225-355 (442)
134 KOG0035 Ca2+-binding actin-bun 82.3 3.4 7.4E-05 38.4 5.7 72 107-182 747-819 (890)
135 PF14513 DAG_kinase_N: Diacylg 80.5 3.3 7.1E-05 29.7 4.0 71 49-120 5-82 (138)
136 PLN02952 phosphoinositide phos 79.2 16 0.00035 32.8 8.7 86 48-134 13-109 (599)
137 KOG2557 Uncharacterized conser 78.6 15 0.00032 30.7 7.6 112 73-185 60-181 (427)
138 PLN02230 phosphoinositide phos 78.5 8.8 0.00019 34.4 6.9 75 104-180 26-103 (598)
139 KOG1707 Predicted Ras related/ 78.5 5.1 0.00011 35.5 5.3 93 22-120 304-399 (625)
140 PF08726 EFhand_Ca_insen: Ca2+ 76.7 2.2 4.7E-05 26.6 1.9 28 105-133 4-31 (69)
141 PF09068 EF-hand_2: EF hand; 73.2 15 0.00033 25.8 5.7 93 86-178 14-124 (127)
142 PLN02228 Phosphoinositide phos 71.5 15 0.00033 32.8 6.5 70 103-180 20-93 (567)
143 KOG4004 Matricellular protein 71.0 1.9 4.1E-05 32.6 0.8 56 76-134 193-249 (259)
144 KOG2243 Ca2+ release channel ( 70.2 9.8 0.00021 37.5 5.2 73 24-98 4036-4120(5019)
145 KOG4004 Matricellular protein 69.5 1.9 4.1E-05 32.6 0.5 51 48-99 201-251 (259)
146 PF08414 NADPH_Ox: Respiratory 67.6 26 0.00056 23.5 5.5 22 73-96 33-54 (100)
147 PF00404 Dockerin_1: Dockerin 66.1 12 0.00026 17.4 2.7 16 117-132 1-16 (21)
148 cd02977 ArsC_family Arsenate R 65.6 14 0.0003 24.7 4.2 63 113-185 26-91 (105)
149 PF08976 DUF1880: Domain of un 62.4 8.5 0.00018 26.6 2.5 34 143-180 3-36 (118)
150 PLN02223 phosphoinositide phos 62.4 44 0.00095 29.7 7.5 76 104-180 13-93 (537)
151 KOG0998 Synaptic vesicle prote 61.9 5.1 0.00011 37.5 1.9 72 26-100 276-347 (847)
152 TIGR01848 PHA_reg_PhaR polyhyd 60.8 28 0.00062 23.6 4.8 64 114-181 10-79 (107)
153 PLN02222 phosphoinositide phos 59.6 34 0.00073 30.7 6.4 68 105-180 23-91 (581)
154 cd07313 terB_like_2 tellurium 57.2 44 0.00095 22.1 5.5 83 48-132 12-97 (104)
155 PF02337 Gag_p10: Retroviral G 56.2 30 0.00066 22.8 4.3 53 1-58 1-56 (90)
156 cd03035 ArsC_Yffb Arsenate Red 55.5 19 0.00041 24.3 3.4 53 122-185 34-89 (105)
157 PF01023 S_100: S-100/ICaBP ty 55.2 36 0.00077 19.0 4.6 32 31-62 4-35 (44)
158 KOG4403 Cell surface glycoprot 54.7 21 0.00045 30.5 4.0 29 107-135 68-96 (575)
159 PF04876 Tenui_NCP: Tenuivirus 54.4 81 0.0018 22.9 7.0 45 142-189 126-170 (175)
160 KOG2871 Uncharacterized conser 53.8 13 0.00028 31.1 2.7 32 105-136 307-338 (449)
161 PF05920 Homeobox_KN: Homeobox 52.7 7.9 0.00017 21.2 1.0 29 9-37 7-35 (40)
162 COG5394 Uncharacterized protei 52.7 22 0.00047 26.1 3.4 21 115-135 20-40 (193)
163 KOG1264 Phospholipase C [Lipid 52.5 1.5E+02 0.0034 28.0 9.2 149 25-180 135-294 (1267)
164 PF11569 Homez: Homeodomain le 51.9 21 0.00046 21.2 2.7 25 13-37 23-47 (56)
165 cd07313 terB_like_2 tellurium 51.5 46 0.001 21.9 4.8 81 83-172 12-93 (104)
166 cd03032 ArsC_Spx Arsenate Redu 51.3 53 0.0011 22.4 5.2 62 113-185 27-91 (115)
167 cd03034 ArsC_ArsC Arsenate Red 49.7 41 0.0009 22.8 4.4 55 121-185 33-90 (112)
168 PRK10026 arsenate reductase; P 49.2 32 0.00069 24.7 3.9 57 122-185 37-93 (141)
169 PF04876 Tenui_NCP: Tenuivirus 49.0 76 0.0016 23.0 5.6 77 71-156 84-161 (175)
170 PF00427 PBS_linker_poly: Phyc 46.9 85 0.0018 22.3 5.6 24 165-188 42-65 (131)
171 KOG3442 Uncharacterized conser 46.7 42 0.0009 23.5 3.9 44 119-167 51-94 (132)
172 PF13608 Potyvirid-P3: Protein 46.0 12 0.00027 32.3 1.6 63 32-97 288-354 (445)
173 PF07879 PHB_acc_N: PHB/PHA ac 45.3 21 0.00046 21.8 2.0 22 114-135 10-31 (64)
174 TIGR00014 arsC arsenate reduct 45.1 50 0.0011 22.5 4.2 55 122-185 34-91 (114)
175 PF12174 RST: RCD1-SRO-TAF4 (R 45.0 16 0.00036 22.7 1.6 49 84-136 6-54 (70)
176 PLN02228 Phosphoinositide phos 43.9 1E+02 0.0022 27.7 6.9 68 22-96 16-90 (567)
177 COG4860 Uncharacterized protei 43.7 1.2E+02 0.0026 21.8 8.7 120 36-185 27-146 (170)
178 PF04783 DUF630: Protein of un 43.4 17 0.00038 21.9 1.5 19 1-24 1-19 (60)
179 PF02864 STAT_bind: STAT prote 42.7 54 0.0012 26.1 4.6 54 122-175 177-231 (254)
180 cd03036 ArsC_like Arsenate Red 42.6 58 0.0013 22.0 4.2 63 113-185 26-92 (111)
181 KOG3449 60S acidic ribosomal p 41.2 74 0.0016 21.7 4.3 42 109-154 3-44 (112)
182 PF05099 TerB: Tellurite resis 41.1 34 0.00073 24.0 3.0 91 33-128 24-117 (140)
183 PRK12559 transcriptional regul 40.5 60 0.0013 22.8 4.2 65 113-185 27-91 (131)
184 PF13720 Acetyltransf_11: Udp 39.8 1E+02 0.0022 19.8 5.3 53 23-81 24-76 (83)
185 PF03960 ArsC: ArsC family; I 39.5 15 0.00034 24.8 1.0 66 113-185 23-88 (110)
186 PRK13344 spxA transcriptional 38.9 59 0.0013 22.9 3.9 65 113-185 27-91 (132)
187 PF07900 DUF1670: Protein of u 38.0 71 0.0015 24.8 4.4 47 13-62 70-116 (220)
188 PRK01655 spxA transcriptional 36.5 98 0.0021 21.7 4.8 54 122-185 35-91 (131)
189 COG4103 Uncharacterized protei 36.5 1.6E+02 0.0035 21.2 6.8 62 111-180 34-95 (148)
190 PF03705 CheR_N: CheR methyltr 35.1 78 0.0017 18.2 3.5 51 127-182 3-56 (57)
191 PTZ00373 60S Acidic ribosomal 33.7 1.1E+02 0.0023 21.1 4.3 40 110-153 6-45 (112)
192 PF05099 TerB: Tellurite resis 33.7 1.1E+02 0.0024 21.2 4.7 86 83-175 36-122 (140)
193 PF07308 DUF1456: Protein of u 33.6 1.2E+02 0.0026 18.8 4.8 23 127-153 17-39 (68)
194 PF11116 DUF2624: Protein of u 33.0 1.4E+02 0.0031 19.4 6.0 28 122-153 13-40 (85)
195 PF09824 ArsR: ArsR transcript 33.0 2E+02 0.0043 21.1 9.8 123 35-187 19-141 (160)
196 TIGR00988 hip integration host 32.7 54 0.0012 21.4 2.8 47 124-174 1-49 (94)
197 PF12872 OST-HTH: OST-HTH/LOTU 32.6 1.2E+02 0.0026 18.4 5.9 48 34-95 9-56 (74)
198 PLN02222 phosphoinositide phos 30.7 1.3E+02 0.0029 27.1 5.5 69 22-97 17-89 (581)
199 COG3793 TerB Tellurite resista 29.9 1.6E+02 0.0035 21.2 4.8 62 121-182 38-101 (144)
200 PF03979 Sigma70_r1_1: Sigma-7 29.5 78 0.0017 20.2 3.0 29 120-154 18-46 (82)
201 PF11907 DUF3427: Domain of un 29.3 2.7E+02 0.0059 22.3 6.8 62 120-185 24-94 (274)
202 PF09373 PMBR: Pseudomurein-bi 29.2 67 0.0015 16.6 2.2 17 120-136 1-17 (33)
203 cd03033 ArsC_15kD Arsenate Red 29.0 1.1E+02 0.0023 20.9 3.8 52 122-185 35-89 (113)
204 PF04523 Herpes_U30: Herpes vi 28.7 1.9E+02 0.0041 27.7 6.4 81 121-211 327-410 (887)
205 cd05833 Ribosomal_P2 Ribosomal 28.6 1.4E+02 0.0031 20.4 4.3 39 111-153 5-43 (109)
206 PLN02230 phosphoinositide phos 28.2 1.5E+02 0.0032 26.9 5.4 13 50-62 43-55 (598)
207 cd00086 homeodomain Homeodomai 27.4 57 0.0012 18.6 2.0 28 11-38 23-50 (59)
208 COG1393 ArsC Arsenate reductas 27.4 1.7E+02 0.0037 20.1 4.6 54 122-185 36-92 (117)
209 KOG1265 Phospholipase C [Lipid 27.2 3.9E+02 0.0085 25.7 7.8 79 54-134 207-298 (1189)
210 PF02761 Cbl_N2: CBL proto-onc 27.1 1.8E+02 0.004 18.9 6.0 52 120-179 19-70 (85)
211 PRK12461 UDP-N-acetylglucosami 26.3 3E+02 0.0065 21.8 6.4 57 23-85 196-252 (255)
212 PF08672 APC2: Anaphase promot 26.0 1E+02 0.0022 18.5 2.9 33 103-136 11-45 (60)
213 PF09821 AAA_assoc_C: C-termin 25.1 2.4E+02 0.0052 19.6 5.0 31 70-100 64-94 (120)
214 COG5611 Predicted nucleic-acid 25.1 2.4E+02 0.0053 19.6 7.2 79 105-185 19-98 (130)
215 PF07492 Trehalase_Ca-bi: Neut 24.7 23 0.0005 18.1 -0.1 17 156-172 4-20 (30)
216 TIGR01616 nitro_assoc nitrogen 24.6 1.5E+02 0.0033 20.7 4.0 52 122-185 36-90 (126)
217 PF09873 DUF2100: Uncharacteri 24.2 2.3E+02 0.005 21.8 5.0 18 83-100 38-55 (215)
218 PF08002 DUF1697: Protein of u 23.9 2.7E+02 0.0059 19.7 5.5 71 113-183 8-92 (137)
219 PF05872 DUF853: Bacterial pro 23.6 2.2E+02 0.0048 25.0 5.4 127 52-195 106-242 (502)
220 KOG1785 Tyrosine kinase negati 23.4 3.8E+02 0.0083 23.0 6.6 89 49-141 188-280 (563)
221 PF09682 Holin_LLH: Phage holi 23.4 2.4E+02 0.0053 19.0 5.6 50 112-161 56-105 (108)
222 KOG2419 Phosphatidylserine dec 23.3 49 0.0011 30.0 1.5 27 72-98 439-465 (975)
223 PF03672 UPF0154: Uncharacteri 22.6 2E+02 0.0043 17.6 4.0 30 121-154 29-58 (64)
224 KOG1228 Uncharacterized conser 22.2 31 0.00067 26.6 0.1 20 192-211 109-128 (256)
225 TIGR01669 phage_XkdX phage unc 22.1 1.6E+02 0.0035 16.5 3.0 14 48-61 28-41 (45)
226 PF12486 DUF3702: ImpA domain 21.9 1.7E+02 0.0037 21.2 3.8 34 112-145 74-107 (148)
227 KOG1954 Endocytosis/signaling 21.9 1.9E+02 0.0042 24.7 4.6 27 105-131 475-501 (532)
228 PF11848 DUF3368: Domain of un 21.8 1.7E+02 0.0036 16.5 3.5 31 120-153 14-44 (48)
229 PF04157 EAP30: EAP30/Vps36 fa 20.9 3.9E+02 0.0086 20.5 6.6 37 109-154 176-212 (223)
230 PRK00819 RNA 2'-phosphotransfe 20.9 2.1E+02 0.0045 21.5 4.3 33 117-153 27-59 (179)
231 COG2944 Predicted transcriptio 20.4 1.1E+02 0.0024 20.7 2.4 35 16-61 33-67 (104)
232 PLN02223 phosphoinositide phos 20.3 4.2E+02 0.0091 23.8 6.5 65 28-98 14-92 (537)
233 PF12419 DUF3670: SNF2 Helicas 20.2 1.7E+02 0.0037 20.8 3.6 54 120-177 80-139 (141)
234 cd07316 terB_like_DjlA N-termi 20.0 2.6E+02 0.0057 18.1 6.7 50 48-98 12-64 (106)
No 1
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-26 Score=172.09 Aligned_cols=179 Identities=43% Similarity=0.668 Sum_probs=159.4
Q ss_pred CCCcccccccCCCCCCCHHHHHhhcC----CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHH
Q 040252 1 MGCFQSKVAKQFPGHEDPVLLASQTA----FSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIF 76 (213)
Q Consensus 1 Mg~~~s~~~~~~~~~~~~~~~~~~~~----~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~ 76 (213)
||+..|+... ++++..+...+. ||..||.+++.+|.+++... ++|+|+.++|..+. .....++..+++
T Consensus 1 Mg~~~s~~~~----~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~---~~~~Np~~~rI~ 72 (187)
T KOG0034|consen 1 MGNLSSTLLS----DEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIP---ELALNPLADRII 72 (187)
T ss_pred CCcccccccc----hhhhHHHHhccCCCcccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHH---HHhcCcHHHHHH
Confidence 8988777543 377888999999 99999999999999998752 68999999999776 345567789999
Q ss_pred HHhcCCCCCc-ccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCC--CHHHHHHHH
Q 040252 77 DLFDVKRKGV-IDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKL--ADETIEIIL 153 (213)
Q Consensus 77 ~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l--~~~~~~~~~ 153 (213)
..++.+++|. |+|++|+..++.+......+++++.+|++||.+++|.|+.+|+..++..++ +... +++.++.++
T Consensus 73 ~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~---~~~~~~~~e~~~~i~ 149 (187)
T KOG0034|consen 73 DRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV---GENDDMSDEQLEDIV 149 (187)
T ss_pred HHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH---ccCCcchHHHHHHHH
Confidence 9999998888 999999999999998777788999999999999999999999999999885 3334 489999999
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHhcChhHHHhhCcC
Q 040252 154 DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLKIMTLP 190 (213)
Q Consensus 154 ~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~~~~ 190 (213)
..+|.++|.|+||.|+++||.+++.++|++.+.+.++
T Consensus 150 d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~ 186 (187)
T KOG0034|consen 150 DKTFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTIR 186 (187)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCCC
Confidence 9999999999999999999999999999999988765
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=167.47 Aligned_cols=151 Identities=28% Similarity=0.505 Sum_probs=140.8
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 21 LASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 21 ~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
+...+.|+++++++++++|..+|++ ++|.|+..+|..++...+.. +..++.++++.+|. +.+.|+|.+|+.++...
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 6777889999999999999999999 99999999999998776654 67789999999999 88999999999999998
Q ss_pred CCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 100 HPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 100 ~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
......+++++++|+.||.|++|+|+..||+.+++.+ |..+++++++.++ +.+|.|++|.|+|++|++.+..
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l----ge~~~deev~~ll----~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL----GERLSDEEVEKLL----KEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh----cccCCHHHHHHHH----HhcCCCCCceEeHHHHHHHHhc
Confidence 8778889999999999999999999999999999988 9999999999998 8999999999999999999988
Q ss_pred Chh
Q 040252 180 NPS 182 (213)
Q Consensus 180 ~~~ 182 (213)
.|.
T Consensus 157 ~~~ 159 (160)
T COG5126 157 SPT 159 (160)
T ss_pred cCC
Confidence 764
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-26 Score=172.18 Aligned_cols=179 Identities=31% Similarity=0.469 Sum_probs=156.7
Q ss_pred CCCc-ccccccCCCCCCCHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCc--cchHHHHHHHH
Q 040252 1 MGCF-QSKVAKQFPGHEDPVLLASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRK--KENLFANRIFD 77 (213)
Q Consensus 1 Mg~~-~s~~~~~~~~~~~~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~--~~~~~~~~l~~ 77 (213)
||.. .+++.+ +.++++...++|++.++..+++.|...| .+|.++.++|+.++..... .+..++..+|+
T Consensus 1 m~~~~~~~~~~-----~~~e~l~~~t~f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~ 71 (193)
T KOG0044|consen 1 MGKKSNSKLQP-----ESLEQLVQQTKFSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASKYAELVFR 71 (193)
T ss_pred CCccccccCCc-----HHHHHHHHhcCCCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 6665 556666 8899999999999999999999999988 5799999999988876443 35678899999
Q ss_pred HhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhccc---CCCHHHHHHHHH
Q 040252 78 LFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEM---KLADETIEIILD 154 (213)
Q Consensus 78 ~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~---~l~~~~~~~~~~ 154 (213)
.+|.+++|.|+|.||+.+++..++ +..+++++++|++||.||+|+|+++|+..++++++...+. ...+...++.+.
T Consensus 72 ~fD~~~dg~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~ 150 (193)
T KOG0044|consen 72 TFDKNKDGTIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVD 150 (193)
T ss_pred HhcccCCCCcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHH
Confidence 999999999999999999999995 9999999999999999999999999999999999766553 122344667778
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHhcChhHHHhhCc
Q 040252 155 KTFLDADVNQDGKIDKCEWQNFVSKNPSLLKIMTL 189 (213)
Q Consensus 155 ~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~~~ 189 (213)
.+|+.+|.|+||.||++||...+...|.++..++.
T Consensus 151 ~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 151 KIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred HHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhh
Confidence 88899999999999999999999999999988754
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.89 E-value=8.1e-22 Score=144.27 Aligned_cols=143 Identities=27% Similarity=0.453 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCCh
Q 040252 27 FSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQ 105 (213)
Q Consensus 27 ~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 105 (213)
++..++..+..+|..+|.+ ++|+|+..+|..++...+.. ....+..++..+|.+++|.|++.+|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 5778889999999999999 99999999999999877655 55678999999999999999999999999776543333
Q ss_pred ----HHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 106 ----EDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 106 ----~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
.+.++.+|+.||.|++|+|+.+||+.++..+ |...+..+++.++ +.+|.|++|.|+|++|++++..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l----g~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSL----GEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh----CCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 4589999999999999999999999999988 9999999998888 8999999999999999999875
No 5
>PTZ00183 centrin; Provisional
Probab=99.87 E-value=7.7e-21 Score=139.86 Aligned_cols=148 Identities=22% Similarity=0.346 Sum_probs=130.4
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC
Q 040252 25 TAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNA 103 (213)
Q Consensus 25 ~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 103 (213)
..+++.+++++...|..+|.+ ++|.|+..+|..++...+.. ....+..++..+|.+++|.|+|.+|+.++.......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 458899999999999999998 99999999999888765543 445689999999999999999999999887654345
Q ss_pred ChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChh
Q 040252 104 PQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPS 182 (213)
Q Consensus 104 ~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~ 182 (213)
...+.++.+|+.+|.+++|.|+.+||..++..+ +..++..+++.++ ..+|.+++|.|++++|.+++...|.
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKEL----GETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 667889999999999999999999999999877 8889988887777 8999999999999999999998874
No 6
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=130.88 Aligned_cols=180 Identities=29% Similarity=0.495 Sum_probs=150.0
Q ss_pred CCCcccccccCCCCCCCHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCC----CC--cccHHHHHHHHHhcCccchHHHHH
Q 040252 1 MGCFQSKVAKQFPGHEDPVLLASQTAFSVSEVEALFELFKMISSSVVD----DG--LISKEEFQLALFKNRKKENLFANR 74 (213)
Q Consensus 1 Mg~~~s~~~~~~~~~~~~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~----~G--~i~~~ef~~~l~~~~~~~~~~~~~ 74 (213)
||+.+.-.+. +++..++.-+-|++++|-++...|..+.++.+. .| -+..-.+..+-.......+++-++
T Consensus 1 MGNK~~vFT~-----eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~r 75 (189)
T KOG0038|consen 1 MGNKQTVFTE-----EQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRR 75 (189)
T ss_pred CCCccceeeH-----HHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHH
Confidence 8987777777 999999999999999999999999999876211 11 111112221222233455677799
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 040252 75 IFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILD 154 (213)
Q Consensus 75 l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~ 154 (213)
+...+..++.|.++|++|+.+++.++...+.+-++..+|++||.|+++.|...++...+..+. ...++++++..+..
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT---r~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT---RDELSDEEVELICE 152 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh---hccCCHHHHHHHHH
Confidence 999999999999999999999999998788888999999999999999999999999998773 57899999998888
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHhcChhHHHhhC
Q 040252 155 KTFLDADVNQDGKIDKCEWQNFVSKNPSLLKIMT 188 (213)
Q Consensus 155 ~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~~ 188 (213)
.+..+.|.|+||.+++.||..++.+.|+++.-+.
T Consensus 153 kvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFH 186 (189)
T KOG0038|consen 153 KVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFH 186 (189)
T ss_pred HHHHHhcCCCCCcccHHHHHHHHHhCcchHhhhe
Confidence 8889999999999999999999999999987553
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.85 E-value=1.5e-19 Score=131.57 Aligned_cols=144 Identities=24% Similarity=0.455 Sum_probs=125.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCC
Q 040252 26 AFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAP 104 (213)
Q Consensus 26 ~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 104 (213)
.+++++++.+...|..+|.+ ++|.|+..+|..++...+.. ....+..++..+|.+++|.|+|++|+.++........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 47889999999999999998 99999999999888654432 3456799999999999999999999999876654456
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
....+..+|+.+|.+++|.|+.+||..++..+ +..++..+++.++ ..+|.+++|.|+|+||+.++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL----GEKLTDEEVDEMI----READVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH----CCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHhc
Confidence 67789999999999999999999999999877 8888888777776 8999999999999999988753
No 8
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.5e-19 Score=128.13 Aligned_cols=148 Identities=23% Similarity=0.371 Sum_probs=133.2
Q ss_pred hhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccc-hHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC
Q 040252 23 SQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKE-NLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHP 101 (213)
Q Consensus 23 ~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~-~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 101 (213)
....+++.+-+.+...|+.++++ ++|+|+.++|..++...+..+ ...+.++...+|+++.|.|+|++|+..+.....
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~ 100 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG 100 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh
Confidence 45667888888999999999988 999999999988887777663 455789999999999999999999999876555
Q ss_pred CCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 102 NAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 102 ~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
.....+.+..+|+.+|.|++|.|+..+|+.+.+.+ |++++++++++++ .++|.+++|.|+-+||..+++..
T Consensus 101 e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL----genltD~El~eMI----eEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 101 ERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL----GENLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred ccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh----CccccHHHHHHHH----HHhcccccccccHHHHHHHHhcC
Confidence 57799999999999999999999999999999998 9999999999999 89999999999999999998764
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.75 E-value=2.6e-17 Score=122.76 Aligned_cols=158 Identities=22% Similarity=0.303 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCc-c-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHH
Q 040252 32 VEALFELFKMISSSVVDDGLISKEEFQLALFKNRK-K-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKI 109 (213)
Q Consensus 32 i~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~-~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l 109 (213)
--.+...|...|.+ +.|.|+.+|+..+|-.... . +...++.|...+|.+.+|+|+++||..++..+. .+
T Consensus 56 ~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QW 126 (221)
T ss_pred cHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HH
Confidence 34678889999999 9999999999999853232 2 456689999999999999999999999997664 59
Q ss_pred HHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHHhh-C
Q 040252 110 DFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLKIM-T 188 (213)
Q Consensus 110 ~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~-~ 188 (213)
+.+|+.||+|++|.|+..||++++..+ |..++++..+.++ +.+|..++|.|.+++|++++...+-+.+.+ .
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~----Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~ 198 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQL----GYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRR 198 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHc----CcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 9999998887777 899977799999999999998777666544 3
Q ss_pred --cCccccccccCCcccccc
Q 040252 189 --LPYLRDITTSFPSFIFNS 206 (213)
Q Consensus 189 --~~~~~~~~~~~~~~~~~~ 206 (213)
......++..|.+|+.+.
T Consensus 199 ~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 199 RDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred hccccceeEEEeHHHHHHHh
Confidence 334555666677777653
No 10
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.75 E-value=2e-16 Score=111.49 Aligned_cols=139 Identities=20% Similarity=0.377 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCC
Q 040252 26 AFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAP 104 (213)
Q Consensus 26 ~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 104 (213)
-|++.+|.++++.|..+|.+ ++|.|+.++++..|...+.. ++.++..++.. ..|.|+|--|+.++....+..+
T Consensus 25 mf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtd 98 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTD 98 (171)
T ss_pred HhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCC
Confidence 37899999999999999998 99999999999998777654 55566776665 5789999999999988777789
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVS 178 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~ 178 (213)
+++.+..+|+.||.+++|.|..+.|+.+|... |.++++++++.++ +.+-.|..|.++|..|+.++.
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~----gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTM----GDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHh----cccCCHHHHHHHH----HhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999887 9999999998888 888888999999999999987
No 11
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.66 E-value=3.8e-15 Score=103.32 Aligned_cols=143 Identities=20% Similarity=0.302 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCC--CCCcccHHHHHHHHhhhCCC
Q 040252 26 AFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVK--RKGVIDFSDFVRSLSVFHPN 102 (213)
Q Consensus 26 ~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~~~~ 102 (213)
.+++++...++++|..+|.. ++|.|+..+....|...+.. .+..+.+.....+.+ +-..++|++|+.++..+.++
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred ccCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 46677778888899999888 99999999998888766654 334456666666555 34689999999998776643
Q ss_pred --CChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 103 --APQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 103 --~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
+...+.....++.||++++|.|...||+.+|..+ |..+++.+++.++ .--.|.+|.|.|+.|++.+..
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl----Gekl~eeEVe~Ll-----ag~eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL----GEKLTEEEVEELL-----AGQEDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH----HhhccHHHHHHHH-----ccccccCCcCcHHHHHHHHhc
Confidence 3345667778999999999999999999999888 9999999999998 445588899999999998753
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.66 E-value=3.2e-15 Score=120.81 Aligned_cols=139 Identities=26% Similarity=0.383 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc--chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCC
Q 040252 27 FSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK--ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAP 104 (213)
Q Consensus 27 ~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~--~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 104 (213)
..++.-.++..+|+.+|.+ ++|.++..++.+.+.....+ ....++.+|...|.|.+|.+||++|..++ ..
T Consensus 8 ~~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~------~~ 79 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYL------DN 79 (463)
T ss_pred CcHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHH------HH
Confidence 4455556788999999988 99999999999888655443 34567999999999999999999999988 44
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
.+.++..+|+..|.++||.|+.+|+...++.+ |.++++++++.++ +.+|+++.+.|+++||..++..+|
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~----gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL----GIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh----CCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhcCC
Confidence 55689999999999999999999999999988 9999999998866 899999999999999999999888
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.45 E-value=3.4e-13 Score=84.57 Aligned_cols=66 Identities=30% Similarity=0.600 Sum_probs=61.0
Q ss_pred HHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 040252 108 KIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFV 177 (213)
Q Consensus 108 ~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l 177 (213)
+++.+|+.+|.|++|+|+.+||..++..+ +...++.+++..+..+|+.+|.|++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL----GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT----TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh----cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999887 7777788899999999999999999999999999875
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.42 E-value=2.3e-12 Score=112.30 Aligned_cols=117 Identities=22% Similarity=0.319 Sum_probs=98.5
Q ss_pred CCCCCCHHHHHhh--cCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcC----ccc-hHHHHHHHHHhcCCCC
Q 040252 12 FPGHEDPVLLASQ--TAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNR----KKE-NLFANRIFDLFDVKRK 84 (213)
Q Consensus 12 ~~~~~~~~~~~~~--~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~----~~~-~~~~~~l~~~~d~~~~ 84 (213)
..+++++..++.. +.|+..|+.++++.|+.+|++ ++|.+ +..++...+ +.. ..+++.+|..+|.+++
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDED 193 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 3566888888888 899999999999999999999 99987 444443333 221 2347999999999999
Q ss_pred CcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHH
Q 040252 85 GVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 85 g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
|.|+++||+.++..+. ....++++..+|+.||.|++|.|+.+||+.++..
T Consensus 194 G~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 194 GQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999998765 3677888999999999999999999999999877
No 15
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.29 E-value=6.6e-11 Score=88.70 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=112.4
Q ss_pred CCCCHHHHH---hhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHH
Q 040252 14 GHEDPVLLA---SQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFS 90 (213)
Q Consensus 14 ~~~~~~~~~---~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ 90 (213)
..++++... ....|+.+-++-+..+|+.- .+|+|+.+||. .|+... ..++.+|+.+|.|++|.|+..
T Consensus 75 ~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~-----~~G~i~f~EF~-~Lw~~i----~~Wr~vF~~~D~D~SG~I~~s 144 (221)
T KOG0037|consen 75 LAKELQQALSNGTWSPFSIETCRLMISMFDRD-----NSGTIGFKEFK-ALWKYI----NQWRNVFRTYDRDRSGTIDSS 144 (221)
T ss_pred cHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCC-----CCCccCHHHHH-HHHHHH----HHHHHHHHhcccCCCCcccHH
Confidence 335555542 45678888888877776664 89999999999 554432 236999999999999999999
Q ss_pred HHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCC--cc
Q 040252 91 DFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDG--KI 168 (213)
Q Consensus 91 ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g--~I 168 (213)
|+..++..+. .....+.+..+++.||..++|.|.+++|.+++-.+ ..+-..|+..|.+..| .|
T Consensus 145 EL~~Al~~~G-y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L--------------~~lt~~Fr~~D~~q~G~i~~ 209 (221)
T KOG0037|consen 145 ELRQALTQLG-YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL--------------QRLTEAFRRRDTAQQGSITI 209 (221)
T ss_pred HHHHHHHHcC-cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH--------------HHHHHHHHHhccccceeEEE
Confidence 9999998877 47888999999999999889999999999998655 2334566899998888 58
Q ss_pred cHHHHHHHHh
Q 040252 169 DKCEWQNFVS 178 (213)
Q Consensus 169 s~~eF~~~l~ 178 (213)
+|++|+.+..
T Consensus 210 ~y~dfl~~t~ 219 (221)
T KOG0037|consen 210 SYDDFLQMTM 219 (221)
T ss_pred eHHHHHHHhh
Confidence 8999998754
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=9.2e-11 Score=92.72 Aligned_cols=141 Identities=24% Similarity=0.325 Sum_probs=108.3
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC-------CCC
Q 040252 33 EALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHP-------NAP 104 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~-------~~~ 104 (213)
.++...+.++|.+ ++|.|+..++...+...... ....+.+-+...|.+.+|.|+|++++........ ...
T Consensus 77 ~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 77 ERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred HHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 4688888899977 99999999999777543322 2334578888899999999999999998765321 000
Q ss_pred hH------HHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 040252 105 QE------DKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVS 178 (213)
Q Consensus 105 ~~------~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~ 178 (213)
.+ -.-+.-|+.-|.|++|.++.+||..++ .+.--+....-++...+...|+|+||.|+++||+.=+.
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL-------HPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL-------HPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc-------ChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 00 123457999999999999999999997 44445566667777777999999999999999999887
Q ss_pred cChh
Q 040252 179 KNPS 182 (213)
Q Consensus 179 ~~~~ 182 (213)
.++.
T Consensus 228 ~~~~ 231 (325)
T KOG4223|consen 228 SHEG 231 (325)
T ss_pred hccC
Confidence 6653
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.25 E-value=2.1e-11 Score=80.61 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=58.7
Q ss_pred HHHHHhcccccC-CCCCcccHHHHHHHHHH-HHhhcccCCCH-HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 107 DKIDFSFKLYDL-DNTGFIERQEVKQMLIA-LLCESEMKLAD-ETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 107 ~~l~~~F~~~D~-d~~g~I~~~E~~~~l~~-~~~~~~~~l~~-~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
..+..+|+.||. +++|+|+..||+.+++. + +..++. .++++++ +..|.|+||.|+|+||+.++....
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el----g~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQL----PHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh----hhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHHHH
Confidence 357889999999 99999999999999988 6 666777 7777777 899999999999999999987643
No 18
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=1e-10 Score=85.53 Aligned_cols=106 Identities=25% Similarity=0.330 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHH-H
Q 040252 70 LFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADE-T 148 (213)
Q Consensus 70 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~-~ 148 (213)
..+..+|..+|.+++|.|+-.++..++..+.. .+.+..+..+++.+|.+++|.|+.+||..++... ....... .
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~----~~~~~~~~~ 82 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL----GEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh----hcccccccc
Confidence 34689999999999999999999999988874 7889999999999999999999999999999765 2222211 1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 149 IEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 149 ~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
-..-++..|+.+|.|++|.||..|+.+++...
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 12233455599999999999999999999654
No 19
>PTZ00183 centrin; Provisional
Probab=99.24 E-value=1.3e-10 Score=85.29 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHH
Q 040252 71 FANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIE 150 (213)
Q Consensus 71 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~ 150 (213)
.+..+|..+|.+++|.|++.+|..++..... ......+..+|+.+|.+++|.|+.+||..++.... ........
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---~~~~~~~~-- 91 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL---GERDPREE-- 91 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh---cCCCcHHH--
Confidence 4588999999999999999999998876542 45567899999999999999999999999876531 12223333
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhcC------hhHHHhh-CcCccccccccCCccc
Q 040252 151 IILDKTFLDADVNQDGKIDKCEWQNFVSKN------PSLLKIM-TLPYLRDITTSFPSFI 203 (213)
Q Consensus 151 ~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~------~~~~~~~-~~~~~~~~~~~~~~~~ 203 (213)
++.+|+.+|.+++|.|+.+||..++... ..+..++ .++...+...+|..|+
T Consensus 92 --l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~ 149 (158)
T PTZ00183 92 --ILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFY 149 (158)
T ss_pred --HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 4566699999999999999999998742 2233334 3333445556665553
No 20
>PTZ00184 calmodulin; Provisional
Probab=99.23 E-value=7.8e-11 Score=85.37 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHH
Q 040252 71 FANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIE 150 (213)
Q Consensus 71 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~ 150 (213)
.+...|..+|.+++|.|++++|..++..+. .....+.+..+|+.+|.+++|.|+.+||..++...+ ..... .
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~---~~~~~----~ 83 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM---KDTDS----E 83 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc---cCCcH----H
Confidence 357899999999999999999999886654 245567899999999999999999999999886541 11112 2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 151 IILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 151 ~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
..+..+|+.+|.+++|.|+.++|..++..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 33466679999999999999999998854
No 21
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.19 E-value=2.2e-10 Score=93.83 Aligned_cols=138 Identities=18% Similarity=0.243 Sum_probs=104.3
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHH---hcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC--C-----
Q 040252 33 EALFELFKMISSSVVDDGLISKEEFQLALF---KNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHP--N----- 102 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~---~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~--~----- 102 (213)
.++.+.|+.+|+. ++|+|+..+++.++- ..+.+......++ ...+.+|.|.|.+.+..+..-.. .
T Consensus 464 sdL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl---a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~sl 538 (631)
T KOG0377|consen 464 SDLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLPWRLLRPKL---ANGSDDGKVEYKSTLDNLDTEVILEEAGSSL 538 (631)
T ss_pred hHHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc---cCCCcCcceehHhHHHHhhhhhHHHHHHhHH
Confidence 3577889999998 999999999987763 3344433322222 23345778998887765533110 0
Q ss_pred ----CChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 040252 103 ----APQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVS 178 (213)
Q Consensus 103 ----~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~ 178 (213)
-.....+..+|+.+|.|++|.|+.+||+++++-+..+....++..++-++. +.+|.|+||.|++.||+.+++
T Consensus 539 vetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la----~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 539 VETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA----RSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH----HhhccCCCCcccHHHHHHHHh
Confidence 011235788999999999999999999999998877778889998888888 899999999999999999886
Q ss_pred c
Q 040252 179 K 179 (213)
Q Consensus 179 ~ 179 (213)
-
T Consensus 615 l 615 (631)
T KOG0377|consen 615 L 615 (631)
T ss_pred h
Confidence 4
No 22
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.4e-10 Score=91.65 Aligned_cols=137 Identities=21% Similarity=0.318 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc--chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChH
Q 040252 29 VSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK--ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQE 106 (213)
Q Consensus 29 ~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~--~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 106 (213)
...+.+-...|+..|.+ ++|.++.++|...|....-+ ....++..+..+|+|++|.|+++||+.-+..-..+....
T Consensus 159 ~km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ep 236 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEP 236 (325)
T ss_pred HHHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCc
Confidence 34566777889999998 99999999999666432211 233468888889999999999999998775543222211
Q ss_pred ----HHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 040252 107 ----DKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQN 175 (213)
Q Consensus 107 ----~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~ 175 (213)
..-.+.+..+|.|++|+++.+|++..+.-- +......++..++ .+.|.|+||++|++|-+.
T Consensus 237 eWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~----~~d~A~~EA~hL~----~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 237 EWVLTEREQFFEFRDKNKDGKLDGDELLDWILPS----EQDHAKAEARHLL----HEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccccHHHHHHHhhcCCCCccCHHHHhcccCCC----CccHHHHHHHHHh----hhhccCccccccHHHHhh
Confidence 223567889999999999999999876322 3444555665555 899999999999999665
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.14 E-value=2.3e-10 Score=75.68 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=57.8
Q ss_pred HHHHHhccccc-CCCCC-cccHHHHHHHHHH-----HHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 107 DKIDFSFKLYD-LDNTG-FIERQEVKQMLIA-----LLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 107 ~~l~~~F~~~D-~d~~g-~I~~~E~~~~l~~-----~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
..+..+|+.|| .+|+| .|+.+||+.+|+. + |...++.+++.++ +..|.|++|.|+|+||+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l----g~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL----EEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh----cCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 35788999998 79999 5999999999988 5 7778888898888 8999999999999999998864
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.08 E-value=2.7e-09 Score=77.48 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHH
Q 040252 70 LFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETI 149 (213)
Q Consensus 70 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~ 149 (213)
..+++.|..+|.+++|.|++.++..++..+. ..+....+..+|..+|. |++.|+..+|..+|.... ...-+++++
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~---~~~~~~Eel 94 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLG-FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL---KRGDKEEEL 94 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh---ccCCcHHHH
Confidence 3468999999999999999999999998555 58889999999999999 999999999999997652 233344555
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 150 EIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 150 ~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
. ..|+.+|.|++|.|+..+++.++..
T Consensus 95 ~----~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 95 R----EAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred H----HHHHHhCCCCCceecHHHHHHHHHh
Confidence 4 4459999999999999999999964
No 25
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-09 Score=81.81 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=88.3
Q ss_pred CCHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcC-ccchHHHHHHHHHhcCCCCCcccHHHHHH
Q 040252 16 EDPVLLASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNR-KKENLFANRIFDLFDVKRKGVIDFSDFVR 94 (213)
Q Consensus 16 ~~~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 94 (213)
++++.+-....-.-+.......+|..+|.+ ++|.|+..+|..+|.... ......+.=.|+.+|.|++|.|+++|++.
T Consensus 47 ~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~--~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 47 EEFREIYASFFPDGDASKYAELVFRTFDKN--KDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhccc--CCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHH
Confidence 666666666554455556677778888888 999999999887774321 12222234559999999999999999998
Q ss_pred HHhhh---CC-------CCChHHHHHHhcccccCCCCCcccHHHHHHHHHH
Q 040252 95 SLSVF---HP-------NAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 95 ~~~~~---~~-------~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
++... .. ...+++....+|+.+|.|+||.||.+||...+++
T Consensus 125 iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 125 IVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 87542 11 2346778899999999999999999999998754
No 26
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.02 E-value=1.4e-09 Score=72.71 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=55.0
Q ss_pred HHHHHhccccc-CCCCC-cccHHHHHHHHHHHHhh-cccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 107 DKIDFSFKLYD-LDNTG-FIERQEVKQMLIALLCE-SEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 107 ~~l~~~F~~~D-~d~~g-~I~~~E~~~~l~~~~~~-~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
..+..+|+.|| .||+| +|+.+||+.+++..+.. .....++.++++++ +.+|.|++|.|+|+||+.++....
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHHHHHH
Confidence 34677899999 78998 59999999999763211 12333566677766 899999999999999999987643
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.00 E-value=1.5e-09 Score=72.86 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=58.1
Q ss_pred HHHHHHhcccccC-CC-CCcccHHHHHHHHHHHHhh-cccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 106 EDKIDFSFKLYDL-DN-TGFIERQEVKQMLIALLCE-SEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 106 ~~~l~~~F~~~D~-d~-~g~I~~~E~~~~l~~~~~~-~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
...++.+|+.||. |+ +|.|+.+||+.+++..+.. .+...++.+++.++ +.+|.+++|.|+|++|++++....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3568889999997 97 6999999999999762111 25567777787777 899999999999999999887543
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.98 E-value=2.9e-09 Score=71.73 Aligned_cols=85 Identities=22% Similarity=0.283 Sum_probs=66.6
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHH
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLL 184 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~ 184 (213)
....+..+|+.+|.+++|.|+.+|++.+++.. .+++.+++.++ ..+|.+++|.|+++||+.++.......
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~------~~~~~ev~~i~----~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS------GLPQTLLAKIW----NLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc------CCCHHHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999764 46777777766 889999999999999999887643332
Q ss_pred HhhCcCccccccccCCccccc
Q 040252 185 KIMTLPYLRDITTSFPSFIFN 205 (213)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~ 205 (213)
+..++..++|+++..
T Consensus 78 ------~g~~~~~~~~~~~~~ 92 (96)
T smart00027 78 ------NGYPIPASLPPSLIP 92 (96)
T ss_pred ------cCCCCCccCCHhhcC
Confidence 244556667776653
No 29
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.97 E-value=1e-08 Score=84.68 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=112.7
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcC----CCCCcccHHHHHHHHhhhC
Q 040252 25 TAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDV----KRKGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 25 ~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~----~~~g~i~~~ef~~~~~~~~ 100 (213)
.-||-+.-..++..|-.+|++ ++|.|+.+++.+.=... -....++++|..+-. ..+|.++|++|+.++....
T Consensus 270 ~~FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry~d~t--lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 270 RYFSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRYGDHT--LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred hheeHHHHHHHHHHHhhhccc--cccccCHHHHHHHhccc--hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 347777777888889999999 99999999998543222 335668999994433 3579999999999998877
Q ss_pred CCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 040252 101 PNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCES-EMKLADETIEIILDKTFLDADVNQDGKIDKCEWQN 175 (213)
Q Consensus 101 ~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~-~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~ 175 (213)
+.....-++.-|+.+|.+++|.|+..|+.-+....++.+ .....+--+++++.+++..+.+...+.||..+|..
T Consensus 346 -~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 346 -DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred -cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 477777899999999999999999999999888764332 11222223466667777788878889999999998
No 30
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.97 E-value=2.3e-09 Score=70.85 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=57.0
Q ss_pred HHHHhcccccC-CC-CCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 108 KIDFSFKLYDL-DN-TGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 108 ~l~~~F~~~D~-d~-~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
.+..+|+.||. +| +|+|+.+||+.+++..+ ..|..++++++++++ +..|.|++|.|+|+||+.++...
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~-~lg~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKEL-TIGSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHH-hcCCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHHHH
Confidence 46678999998 67 89999999999996410 127888999998888 89999999999999999988753
No 31
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.95 E-value=3.8e-09 Score=70.62 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=59.0
Q ss_pred HHHHHHhccccc-CCCCC-cccHHHHHHHHHH-HHhh-cccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 106 EDKIDFSFKLYD-LDNTG-FIERQEVKQMLIA-LLCE-SEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 106 ~~~l~~~F~~~D-~d~~g-~I~~~E~~~~l~~-~~~~-~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
.+.++.+|+.|| .+++| .|+.+||+.+++. + .. .+...++.+++.++ +.+|.+++|.|+|++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~l-g~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTEL-SDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHH-HHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHHHHH
Confidence 456889999997 99999 5999999999975 4 11 12345677777777 899999999999999999988755
Q ss_pred hHH
Q 040252 182 SLL 184 (213)
Q Consensus 182 ~~~ 184 (213)
...
T Consensus 83 ~~~ 85 (92)
T cd05025 83 VAC 85 (92)
T ss_pred HHH
Confidence 444
No 32
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.95 E-value=4.2e-09 Score=65.79 Aligned_cols=61 Identities=34% Similarity=0.535 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-----chHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 040252 34 ALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-----ENLFANRIFDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 34 ~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-----~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 96 (213)
++..+|+.+|.+ ++|+|+.++|..++...+.. ....++.+|..+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d--~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKD--GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTT--SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCC--ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 356777788877 88888888888777655422 22345666788888888888888887653
No 33
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.89 E-value=6.3e-09 Score=65.02 Aligned_cols=62 Identities=29% Similarity=0.347 Sum_probs=52.4
Q ss_pred HHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 110 DFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 110 ~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
+.+|+.+|.+++|.|+.+|+..++..+ | +++.+++.++ ..+|.+++|.|+++||+.++...+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g--~~~~~~~~i~----~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----G--LPRSVLAQIW----DLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----C--CCHHHHHHHH----HHhcCCCCCcCCHHHHHHHHHHHH
Confidence 468999999999999999999998765 4 4667676666 899999999999999999887644
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.88 E-value=2.1e-08 Score=67.57 Aligned_cols=71 Identities=18% Similarity=0.392 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 26 AFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 26 ~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
.+|.+++..+...|..+|.+ ++|.|+..++..++...+. +...+..++..+|.+++|.|+|++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 57889999999999999988 9999999999988876543 44567889999999889999999999877554
No 35
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.87 E-value=8.3e-09 Score=61.78 Aligned_cols=52 Identities=27% Similarity=0.484 Sum_probs=46.5
Q ss_pred CCCcccHHHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 120 NTGFIERQEVKQMLIALLCESEMK-LADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 120 ~~g~I~~~E~~~~l~~~~~~~~~~-l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
.+|.|+.++|+.++..+ |.. +++++++.++ ..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~----g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL----GIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT----TSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh----CCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999666 878 9999888777 8999999999999999998864
No 36
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.86 E-value=9.3e-09 Score=68.09 Aligned_cols=70 Identities=27% Similarity=0.377 Sum_probs=55.6
Q ss_pred HHHHHhcccccC--CCCCcccHHHHHHHHHHHHhh-cccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 107 DKIDFSFKLYDL--DNTGFIERQEVKQMLIALLCE-SEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 107 ~~l~~~F~~~D~--d~~g~I~~~E~~~~l~~~~~~-~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
..++.+|..||. +++|.|+.+||..+++..+.. .+...+..+++.++ ..+|.+++|.|+|++|+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~----~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM----KDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH----HHhccCCCCcCcHHHHHHHHHHH
Confidence 457889999999 899999999999999763211 11233467776666 89999999999999999998764
No 37
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.84 E-value=2.6e-08 Score=65.84 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcC-CCCCCCcccHHHHHHHHHh-cCc-cch-HHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 30 SEVEALFELFKMISS-SVVDDGLISKEEFQLALFK-NRK-KEN-LFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 30 ~ei~~l~~~F~~~d~-~~~~~G~i~~~ef~~~l~~-~~~-~~~-~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
.-+..+...|+.+|. + ++|+|+..+|+..+.. .+. -+. ..++.+++.+|.|++|.|+|+||..++..+
T Consensus 5 ~ai~~l~~~F~~fd~~~--~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKG--GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCC--CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 346678888888888 7 8999999999988866 442 123 568999999999999999999999887654
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=98.83 E-value=4.3e-08 Score=85.98 Aligned_cols=99 Identities=21% Similarity=0.241 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHH---HHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCH
Q 040252 70 LFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQED---KIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLAD 146 (213)
Q Consensus 70 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~---~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~ 146 (213)
..+.+.|..+|.+++|.+ ....+..+ ....+.+. .+..+|+.+|.|++|.|+.+||..++..+ +...++
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrsl---G~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l----g~~~se 214 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVSC---SIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF----GNLVAA 214 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHHh---CCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh----ccCCCH
Confidence 446888999999999987 33333332 21122333 38899999999999999999999999876 666666
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 147 ETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 147 ~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
+++..++ +.+|.|++|.|+++||..++...
T Consensus 215 EEL~eaF----k~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 215 NKKEELF----KAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHH----HHhCCCCCCcCCHHHHHHHHHhc
Confidence 6666555 99999999999999999999874
No 39
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.83 E-value=4.8e-08 Score=79.76 Aligned_cols=128 Identities=19% Similarity=0.285 Sum_probs=104.1
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHH
Q 040252 69 NLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADET 148 (213)
Q Consensus 69 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~ 148 (213)
+..++.+|..+|.+++|.|+..+....+..+.......+....+|+.+|.|.+|.++.+||++.+..- +
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~---------E-- 81 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK---------E-- 81 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh---------H--
Confidence 34578999999999999999999999888887655778888999999999999999999999998643 1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC------hhHHHhh-CcCccccccccCCcccccchhh
Q 040252 149 IEIILDKTFLDADVNQDGKIDKCEWQNFVSKN------PSLLKIM-TLPYLRDITTSFPSFIFNSEVD 209 (213)
Q Consensus 149 ~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 209 (213)
.-+..+|+..|.++||.|+.+|..+++... ....+++ .++..+.++..+.+|..|..+-
T Consensus 82 --~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 82 --LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred --HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 123556699999999999999999988643 2333444 6667888889999998887653
No 40
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.82 E-value=1.4e-08 Score=70.44 Aligned_cols=64 Identities=22% Similarity=0.360 Sum_probs=51.5
Q ss_pred ChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 104 PQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 104 ~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
.....+.++|..+|.|++|.|+.+|+..+. + ...+ ..+..+|..+|.|+||.||++||..++.+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l------~~~e----~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L------DPNE----HCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c------cchH----HHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 345679999999999999999999999875 2 1122 33455569999999999999999999944
No 41
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=9e-08 Score=68.54 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHH
Q 040252 70 LFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETI 149 (213)
Q Consensus 70 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~ 149 (213)
..++..|..++.+++|.|++.|+..++..+. .....+.+..+..-+|.++.|.|+.++|+.++...+ +..-+.+++
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~---~e~dt~eEi 108 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL---GERDTKEEI 108 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH---hccCcHHHH
Confidence 3468899999999999999999987776666 367778888999999999999999999999987553 444477777
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 150 EIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 150 ~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
...+ +.+|-|++|.|+..+|..+....
T Consensus 109 ~~af----rl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 109 KKAF----RLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHHH----HcccccCCCCcCHHHHHHHHHHh
Confidence 6666 89999999999999999988643
No 42
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.80 E-value=3.8e-08 Score=73.81 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=73.3
Q ss_pred HHhhcCCCCCCCc-ccHHHHHHHHHhcCc--cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCCh------HHHH
Q 040252 39 FKMISSSVVDDGL-ISKEEFQLALFKNRK--KENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQ------EDKI 109 (213)
Q Consensus 39 F~~~d~~~~~~G~-i~~~ef~~~l~~~~~--~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~------~~~l 109 (213)
++.+++. ++|. |+.++|.+.+..... .....++-.|+.+|.+++|.|+.+++..++..+...... .+.+
T Consensus 72 ~~~f~~~--~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~ 149 (187)
T KOG0034|consen 72 IDRFDTD--GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIV 149 (187)
T ss_pred HHHHhcc--CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHH
Confidence 3444444 6666 999999988854222 233356889999999999999999999999887653333 3456
Q ss_pred HHhcccccCCCCCcccHHHHHHHHHH
Q 040252 110 DFSFKLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 110 ~~~F~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
...|..+|.|+||.|+.+|+++++..
T Consensus 150 d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 150 DKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 78899999999999999999999853
No 43
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.80 E-value=2.9e-08 Score=65.75 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=55.0
Q ss_pred HHHHHhccc-ccCCCCC-cccHHHHHHHHHHHHhh-cccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 107 DKIDFSFKL-YDLDNTG-FIERQEVKQMLIALLCE-SEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 107 ~~l~~~F~~-~D~d~~g-~I~~~E~~~~l~~~~~~-~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
..+..+|+. +|.+|+| +|+.+||+.++..-+.. .+...++.+++.++ +..|.|+||.|+|+||++++...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 457789998 7788876 99999999999764211 12345567777777 89999999999999999988764
No 44
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.78 E-value=2.1e-07 Score=86.10 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=113.5
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcC--------ccchHHHHHHHHHhcCCCCCcccHHHH
Q 040252 21 LASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNR--------KKENLFANRIFDLFDVKRKGVIDFSDF 92 (213)
Q Consensus 21 ~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~--------~~~~~~~~~l~~~~d~~~~g~i~~~ef 92 (213)
-...++.|++.++.+.-+|+.+|.+ ++|+++.++|..+|...+ ..+.|..++++..+|++.+|.|+..+|
T Consensus 2241 arn~~GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY 2318 (2399)
T KOG0040|consen 2241 ARNHNGVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDY 2318 (2399)
T ss_pred hhccCCCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHH
Confidence 3456789999999999999999999 999999999999986533 235677899999999999999999999
Q ss_pred HHHHhhhC-CCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCC----CCCc
Q 040252 93 VRSLSVFH-PNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVN----QDGK 167 (213)
Q Consensus 93 ~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~----~~g~ 167 (213)
+.+|..-. .+-...+.+..+|+.+|. +.-+|+.+++..- +++++++-.+..|=..+++. ..+.
T Consensus 2319 ~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-----------ltreqaefc~s~m~~~~e~~~~~s~q~~ 2386 (2399)
T KOG0040|consen 2319 MAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-----------LTREQAEFCMSKMKPYAETSSGRSDQVA 2386 (2399)
T ss_pred HHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-----------CCHHHHHHHHHHhhhhcccccCCCcccc
Confidence 99885432 233455699999999999 8889999988653 45555555555554555542 3456
Q ss_pred ccHHHHHHHHhc
Q 040252 168 IDKCEWQNFVSK 179 (213)
Q Consensus 168 Is~~eF~~~l~~ 179 (213)
+.|.+|++-+..
T Consensus 2387 l~y~dfv~sl~~ 2398 (2399)
T KOG0040|consen 2387 LDYKDFVNSLFV 2398 (2399)
T ss_pred ccHHHHHHHHhc
Confidence 999999987643
No 45
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.78 E-value=7e-08 Score=64.54 Aligned_cols=68 Identities=22% Similarity=0.467 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhc-CCCCCCC-cccHHHHHHHHHhc------CccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 040252 31 EVEALFELFKMIS-SSVVDDG-LISKEEFQLALFKN------RKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 31 ei~~l~~~F~~~d-~~~~~~G-~i~~~ef~~~l~~~------~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 100 (213)
-+..+.++|+.+| .+ ++| +|+..+|+.++... .......++.+++.+|.|++|.|+|+||+.++..+.
T Consensus 8 a~~~~~~~F~~~dd~d--gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKE--GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4566777888887 56 787 59999999888541 122445689999999999999999999999886653
No 46
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.78 E-value=3.6e-08 Score=59.93 Aligned_cols=61 Identities=33% Similarity=0.538 Sum_probs=52.6
Q ss_pred HHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 040252 109 IDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFV 177 (213)
Q Consensus 109 l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l 177 (213)
+..+|..+|.+++|.|+.+|+..++..+ +...+...+..++ ..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL----GEGLSEEEIDEMI----REVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999877 7777777776665 88999999999999998875
No 47
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.77 E-value=2e-08 Score=79.60 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=115.5
Q ss_pred CHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 040252 17 DPVLLASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 17 ~~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 96 (213)
++..+...-++...-+..-.+.+...... .+.+.|...+|...+ ..+.......+|..||.+.+|.+||.+....+
T Consensus 210 eF~~~~r~lkL~~~gl~k~ld~y~~var~-~kg~~igi~efa~~l---~vpvsd~l~~~f~LFde~~tg~~D~re~v~~l 285 (412)
T KOG4666|consen 210 EFVAKRRVLKLPLVGLIKKLDGYVYVARE-AKGPDIGIVEFAVNL---RVPVSDKLAPTFMLFDEGTTGNGDYRETVKTL 285 (412)
T ss_pred HHHHHHhccCCChHHHHHHHhhHHHHHHh-ccCCCcceeEeeeee---ecchhhhhhhhhheecCCCCCcccHHHHhhhh
Confidence 34455555566655555444444333222 055667777776444 22222345899999999999999999999999
Q ss_pred hhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 040252 97 SVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNF 176 (213)
Q Consensus 97 ~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~ 176 (213)
+.+++.....+.++.+|++|+.+.||.+...+|.-+++..+ | +..-.+ -.+|.+.+...+|+|++++|.++
T Consensus 286 avlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l---g--v~~l~v----~~lf~~i~q~d~~ki~~~~f~~f 356 (412)
T KOG4666|consen 286 AVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL---G--VEVLRV----PVLFPSIEQKDDPKIYASNFRKF 356 (412)
T ss_pred eeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc---C--cceeec----cccchhhhcccCcceeHHHHHHH
Confidence 99997777789999999999999999999999999998763 2 211112 23458888889999999999999
Q ss_pred HhcChhHHHh
Q 040252 177 VSKNPSLLKI 186 (213)
Q Consensus 177 l~~~~~~~~~ 186 (213)
...+|++..+
T Consensus 357 a~~~p~~a~~ 366 (412)
T KOG4666|consen 357 AATEPNLALS 366 (412)
T ss_pred HHhCchhhhh
Confidence 9999999853
No 48
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.69 E-value=1.8e-07 Score=61.78 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhc-CCCCCCC-cccHHHHHHHHHh-----cCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 30 SEVEALFELFKMIS-SSVVDDG-LISKEEFQLALFK-----NRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 30 ~ei~~l~~~F~~~d-~~~~~~G-~i~~~ef~~~l~~-----~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
.-+..+.++|+.+| .+ ++| .|+..+|+.+|.. .+.. ....++.+++.+|.|++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34567888888887 57 899 5999999988866 4433 44568999999999999999999999887554
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.65 E-value=2.1e-07 Score=61.58 Aligned_cols=69 Identities=23% Similarity=0.425 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhcC--CCCCCCcccHHHHHHHHHh-cCc-----cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 29 VSEVEALFELFKMISS--SVVDDGLISKEEFQLALFK-NRK-----KENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 29 ~~ei~~l~~~F~~~d~--~~~~~G~i~~~ef~~~l~~-~~~-----~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
+++++.+...|..+|. + ++|.|+..+|..++.. .+. .....+..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4667788888999988 7 8999999999988753 221 135668899999999999999999999887543
No 50
>PF14658 EF-hand_9: EF-hand domain
Probab=98.64 E-value=1.5e-07 Score=57.83 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=55.0
Q ss_pred HhcccccCCCCCcccHHHHHHHHHHHHhhccc-CCCHHHHHHHHHHHHHhhCCCCC-CcccHHHHHHHHhc
Q 040252 111 FSFKLYDLDNTGFIERQEVKQMLIALLCESEM-KLADETIEIILDKTFLDADVNQD-GKIDKCEWQNFVSK 179 (213)
Q Consensus 111 ~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~-~l~~~~~~~~~~~~f~~~d~~~~-g~Is~~eF~~~l~~ 179 (213)
.+|..||.++.|.|...++..+|+++ +. ..++.+++.+. .+.|+++. |.|+++.|...|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~----~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV----TGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH----cCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999988 65 77788888888 89999998 99999999999874
No 51
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.64 E-value=1.7e-07 Score=58.44 Aligned_cols=60 Identities=27% Similarity=0.424 Sum_probs=44.8
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 040252 36 FELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSV 98 (213)
Q Consensus 36 ~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 98 (213)
.+.|..+|++ ++|.|+..++..++...+. +...++.++..+|.+++|.|+|.+|+.++..
T Consensus 2 ~~~F~~~D~~--~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPD--GDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCC--CCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 3467777777 8888888888877766543 4455788888888888888888888877654
No 52
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.63 E-value=2.5e-07 Score=76.18 Aligned_cols=130 Identities=17% Similarity=0.314 Sum_probs=94.5
Q ss_pred HHHHHHhhcCCCCCCCcccHHHHHHHHHhcC-cc---chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHH
Q 040252 35 LFELFKMISSSVVDDGLISKEEFQLALFKNR-KK---ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKID 110 (213)
Q Consensus 35 l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~-~~---~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~ 110 (213)
+.-.|..+|+. .+|.|+..+|...|.... .+ ....++++-+.++.. +..|+++||..++.-+.. -.+-+
T Consensus 320 l~lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~-l~dfd--- 392 (489)
T KOG2643|consen 320 LELEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNN-LNDFD--- 392 (489)
T ss_pred HHHHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhh-hhHHH---
Confidence 44568888886 679999999998875432 22 233567777777766 456999999998866553 23223
Q ss_pred HhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 111 FSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 111 ~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
.|.+.|- .-.+.|+..+|+.+...+ .|.++++..++.++ .-+|.|+||.|+++||+.++++
T Consensus 393 ~Al~fy~-~Ag~~i~~~~f~raa~~v---tGveLSdhVvdvvF----~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 393 IALRFYH-MAGASIDEKTFQRAAKVV---TGVELSDHVVDVVF----TIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHH-HcCCCCCHHHHHHHHHHh---cCcccccceeeeEE----EEEccCCCCcccHHHHHHHHHH
Confidence 3333332 234789999999998765 38899987666555 9999999999999999999864
No 53
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.61 E-value=4.5e-07 Score=59.91 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhcC-CCCC-CCcccHHHHHHHHHh---cCc-cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 29 VSEVEALFELFKMISS-SVVD-DGLISKEEFQLALFK---NRK-KENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 29 ~~ei~~l~~~F~~~d~-~~~~-~G~i~~~ef~~~l~~---~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
++.+..+...|++++. + + +|+|+..+|+..+.. .+. .+...+..+++.+|.+++|.|+|++|+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~--~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGRE--GDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3456778888999887 3 4 789999999998852 232 355678999999999999999999999887554
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.58 E-value=5.1e-07 Score=59.75 Aligned_cols=68 Identities=22% Similarity=0.417 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHh-hcCCCCCCC-cccHHHHHHHHHhcC------ccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 30 SEVEALFELFKM-ISSSVVDDG-LISKEEFQLALFKNR------KKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 30 ~ei~~l~~~F~~-~d~~~~~~G-~i~~~ef~~~l~~~~------~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
..+..+...|+. .+.+ ++| +|+..||..++.... ...+..++.+++.+|.|++|.|+|+||+.++..+
T Consensus 6 ~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 456778899998 5565 655 999999998886531 1234568999999999999999999999887554
No 55
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.58 E-value=2.1e-07 Score=61.56 Aligned_cols=67 Identities=28% Similarity=0.355 Sum_probs=53.4
Q ss_pred HHHHHhcccccCC--CCCcccHHHHHHHHHHHHhhcccCCC----HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 107 DKIDFSFKLYDLD--NTGFIERQEVKQMLIALLCESEMKLA----DETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 107 ~~l~~~F~~~D~d--~~g~I~~~E~~~~l~~~~~~~~~~l~----~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
..+...|+.|+.. ++|.|+.+||+.++...+ +..++ +.+++.++ +.+|.+++|.|+|+||+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~---g~~~t~~~~~~~v~~i~----~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKEL---PNFLKKEKNQKAIDKIF----EDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHh---hHhhccCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 3567789999866 479999999999997432 44444 67777666 89999999999999999998764
No 56
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.56 E-value=4.9e-07 Score=60.32 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhc-CCCCCCCc-ccHHHHHHHHHh-cC-----ccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 040252 32 VEALFELFKMIS-SSVVDDGL-ISKEEFQLALFK-NR-----KKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 32 i~~l~~~F~~~d-~~~~~~G~-i~~~ef~~~l~~-~~-----~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 100 (213)
+..+.+.|+.+| .+ ++|+ |+..+|..+|.. .+ ..+...++.++..+|.+++|.|+|.+|+.++..+.
T Consensus 8 ~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 456777788885 77 8994 999999988853 22 12445678999999999999999999988776543
No 57
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.55 E-value=6.8e-07 Score=59.88 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcC-CCCC-CCcccHHHHHHHHHh-c----Cc-cchHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 040252 32 VEALFELFKMISS-SVVD-DGLISKEEFQLALFK-N----RK-KENLFANRIFDLFDVKRKGVIDFSDFVRSLSV 98 (213)
Q Consensus 32 i~~l~~~F~~~d~-~~~~-~G~i~~~ef~~~l~~-~----~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 98 (213)
...++..|..+|. + + +|.|+..++..++.. . +. .+...++.+++.+|.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4567778888875 6 6 699999999988753 1 22 24456789999999999999999999887754
No 58
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.51 E-value=3.3e-07 Score=70.21 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=98.0
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCc----cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChH--
Q 040252 33 EALFELFKMISSSVVDDGLISKEEFQLALFKNRK----KENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQE-- 106 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~----~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~-- 106 (213)
+.+...|.+.|.+ -+|.|+..++.+.+....- .+....+..|++.|.+++|.|+|+||..-+..... .+..
T Consensus 101 rklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskg-hsekev 177 (362)
T KOG4251|consen 101 RKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKG-HSEKEV 177 (362)
T ss_pred HHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcC-cchHHH
Confidence 4588899999987 8999999999988754221 11223467899999999999999999876654321 1111
Q ss_pred ------------HHHHHhcccccCCCCCcc---------cHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCC
Q 040252 107 ------------DKIDFSFKLYDLDNTGFI---------ERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQD 165 (213)
Q Consensus 107 ------------~~l~~~F~~~D~d~~g~I---------~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~ 165 (213)
+.-.+.|..-+.+..|.. +.+||..++ .+.-+...+..+++.+....|.|+|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL-------HPEhSrgmLrfmVkeivrdlDqdgD 250 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL-------HPEHSRGMLRFMVKEIVRDLDQDGD 250 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc-------ChHhhhhhHHHHHHHHHHHhccCCC
Confidence 111223333344455544 448888887 6777888888899999999999999
Q ss_pred CcccHHHHHHHHh
Q 040252 166 GKIDKCEWQNFVS 178 (213)
Q Consensus 166 g~Is~~eF~~~l~ 178 (213)
.+++..||++...
T Consensus 251 kqlSvpeFislpv 263 (362)
T KOG4251|consen 251 KQLSVPEFISLPV 263 (362)
T ss_pred eeecchhhhcCCC
Confidence 9999999998664
No 59
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.46 E-value=8.9e-07 Score=53.57 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHH
Q 040252 73 NRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQM 132 (213)
Q Consensus 73 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~ 132 (213)
..+|..+|.+++|.|++++|..++.... .......+..+|+.+|.+++|.|+.++|..+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 4455555555555666666555554443 2344445555566666666666666655544
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.44 E-value=1.5e-07 Score=48.54 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=20.3
Q ss_pred HHHhcccccCCCCCcccHHHHHHHHHH
Q 040252 109 IDFSFKLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 109 l~~~F~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
++.+|+.+|.|++|+|+.+||+.+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 567777888888888888888777654
No 61
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.43 E-value=2.5e-06 Score=63.47 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=86.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 040252 18 PVLLASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 18 ~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 96 (213)
+.-+.....|++.+|+.+...|..+|.+ .||+|+..++...+-..+-+ ...-.+.++..+|.|.+|.|+|.+|+.++
T Consensus 84 ~n~yteF~eFsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 84 FNVYTEFSEFSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 3445555678999999999999999999 99999999999888776655 44567999999999999999999999988
Q ss_pred hhhCCCCCh-HHHHHHhcc--cccCCCCCcccHHHHHHHH
Q 040252 97 SVFHPNAPQ-EDKIDFSFK--LYDLDNTGFIERQEVKQML 133 (213)
Q Consensus 97 ~~~~~~~~~-~~~l~~~F~--~~D~d~~g~I~~~E~~~~l 133 (213)
..-...... ...+..+=+ ..|...-|..-...|..+=
T Consensus 162 rkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 162 RKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred HHHhccccccchHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 664432222 222333333 3777777777777666653
No 62
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.37 E-value=1.1e-06 Score=52.35 Aligned_cols=48 Identities=35% Similarity=0.562 Sum_probs=23.9
Q ss_pred CCcccHHHHHHHHHhcCc--cchHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 040252 49 DGLISKEEFQLALFKNRK--KENLFANRIFDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 49 ~G~i~~~ef~~~l~~~~~--~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 96 (213)
+|.|+.++|..++...+. .+...++.+|..+|.+++|.|+|+||+.++
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 455555555555532221 122334555555555555555555555544
No 63
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.36 E-value=3.1e-06 Score=58.74 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHH
Q 040252 72 ANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQML 133 (213)
Q Consensus 72 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l 133 (213)
+.-.|..+|.|++|.|+.+|+..+. ....+..+...|+.+|.|++|.||.+||..++
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4566666666666666666666544 13334555666666666666666666666666
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.35 E-value=3.7e-06 Score=55.58 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHh-cCcc-c----hHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 30 SEVEALFELFKMISSSVVDDGLISKEEFQLALFK-NRKK-E----NLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 30 ~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~-~~~~-~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
.-+..+...|..++...+++|.|+..+|..+|.. .+.. + ...++.+|..+|.+++|.|+|++|+.++..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3466788888888764224789999999988853 2211 2 5668999999999999999999999887554
No 65
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.33 E-value=1.5e-05 Score=66.84 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=83.0
Q ss_pred hhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcC-c-cchHHH-HHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 23 SQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNR-K-KENLFA-NRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 23 ~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~-~-~~~~~~-~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
...+-.+++++.++-.|...+.+ +..+++.++|.+...... . ..++.+ +-+-...|.-+||.|+|+||..+-..+
T Consensus 26 ~lkra~~~eLr~if~~~as~e~~--ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l 103 (694)
T KOG0751|consen 26 LLKRADPKELRSIFLKYASIEKN--GESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL 103 (694)
T ss_pred hhccCChHHHHHHHHHHhHHhhc--cccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc
Confidence 33445788888888888888877 888899999976643222 1 233333 444455577789999999999987776
Q ss_pred CCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHH
Q 040252 100 HPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 100 ~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~ 136 (213)
|. ++.....+|+.||+.++|.++.+++.+++...
T Consensus 104 C~---pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 104 CA---PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred cC---chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 64 46678899999999999999999999998764
No 66
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.30 E-value=8.8e-06 Score=53.57 Aligned_cols=68 Identities=15% Similarity=0.338 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHh-cC-----ccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 040252 30 SEVEALFELFKMISSSVVDDGLISKEEFQLALFK-NR-----KKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 30 ~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~-~~-----~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 100 (213)
.-+..+...|+++.. +.+.++..+|...+.. .+ ...+..+++++..+|.|+||.|+|.||+.++..+.
T Consensus 5 ~ai~~lI~~FhkYaG---~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAG---EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcC---CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 346678889999985 5779999999988732 11 12345689999999999999999999999886653
No 67
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.22 E-value=2.2e-05 Score=55.16 Aligned_cols=106 Identities=17% Similarity=0.114 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCC--CCCcccHHHHHHHHHHHHhhcccCCCH
Q 040252 69 NLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLD--NTGFIERQEVKQMLIALLCESEMKLAD 146 (213)
Q Consensus 69 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d--~~g~I~~~E~~~~l~~~~~~~~~~l~~ 146 (213)
...++.+|..+|..+||.|++.+.-..+..+.. .+....+......++.+ +--.|++++|.-+++.+ ..+-.+
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v----aknk~q 84 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV----AKNKDQ 84 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH----Hhcccc
Confidence 356799999999999999999999998888774 67777888888888877 55789999999999988 333333
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 147 ETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 147 ~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
...++.++- ++.+|++++|.|...|++..|...
T Consensus 85 ~t~edfveg-LrvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 85 GTYEDFVEG-LRVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred CcHHHHHHH-HHhhcccCCcceeHHHHHHHHHHH
Confidence 334444432 279999999999999999999654
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.18 E-value=5.5e-06 Score=56.32 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 26 AFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 26 ~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
+++++|...+...|...++ ++|.|+-.+...+|...+.+. ..+..+|...|.+++|.++++||+.+++..
T Consensus 3 ~ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L~~-~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGLPR-DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTSSH-HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCCCH-HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3677888999999999886 689999999998887777654 346999999999999999999999988643
No 69
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.16 E-value=8.2e-06 Score=67.44 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 154 DKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 154 ~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
+.-|..+|....|.|+-.+|..++..+
T Consensus 321 ~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 321 ELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred HHHHHHhCcccccccCHHHHHHHHHHH
Confidence 333455555555555555555555433
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.10 E-value=2.4e-05 Score=51.54 Aligned_cols=68 Identities=15% Similarity=0.334 Sum_probs=50.3
Q ss_pred HHHHhcccccCCCCCcccHHHHHHHHHHHHhh-cccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 108 KIDFSFKLYDLDNTGFIERQEVKQMLIALLCE-SEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 108 ~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~-~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
.+..+|..|. .+.+.++..||+.++..=+.. .+..-.+..+++++ +..|.|+||.|+|.||+.++...
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im----~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIM----KDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHH
Confidence 4566888888 456799999999999653211 12233455566665 89999999999999999988654
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.08 E-value=6.4e-06 Score=42.41 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhh
Q 040252 72 ANRIFDLFDVKRKGVIDFSDFVRSLSV 98 (213)
Q Consensus 72 ~~~l~~~~d~~~~g~i~~~ef~~~~~~ 98 (213)
++.+|+.+|.|++|.|+++||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 578888888888888888888887754
No 72
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.08 E-value=2.9e-06 Score=44.52 Aligned_cols=27 Identities=33% Similarity=0.728 Sum_probs=22.9
Q ss_pred HHHHhcccccCCCCCcccHHHHHHHHH
Q 040252 108 KIDFSFKLYDLDNTGFIERQEVKQMLI 134 (213)
Q Consensus 108 ~l~~~F~~~D~d~~g~I~~~E~~~~l~ 134 (213)
+++.+|+.+|.|++|.|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367889999999999999999999987
No 73
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.05 E-value=1.3e-05 Score=59.78 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=51.9
Q ss_pred HHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 106 EDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 106 ~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
...+..+|+.||.+.||+|+..|++.+|..+ |..-+.--++.++ ++.|.|.+|.||+-||+-++..
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL----gapQTHL~lK~mi----keVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKL----GAPQTHLGLKNMI----KEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHh----CCchhhHHHHHHH----HHhhcccccchhHHHHHHHHHH
Confidence 3456778999999999999999999999877 5444433445555 8999999999999999876643
No 74
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.02 E-value=1.5e-05 Score=61.33 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=93.7
Q ss_pred HHHhhcCCCCCCCcccHHHHHHHHHhcCccchH---------------HHHHHHHHhcCCCCC---------cccHHHHH
Q 040252 38 LFKMISSSVVDDGLISKEEFQLALFKNRKKENL---------------FANRIFDLFDVKRKG---------VIDFSDFV 93 (213)
Q Consensus 38 ~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~---------------~~~~l~~~~d~~~~g---------~i~~~ef~ 93 (213)
-|+..|++ ++|-|+..+|.--+...-..+.. .-.+.+..-+.+..+ .++-+||+
T Consensus 145 hFraVDpd--gDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEfl 222 (362)
T KOG4251|consen 145 HFRAVDPD--GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFL 222 (362)
T ss_pred heeeeCCC--CCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHH
Confidence 35567777 99999999997554321111100 113344443444433 35558999
Q ss_pred HHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHH
Q 040252 94 RSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLC-ESEMKLADETIEIILDKTFLDADVNQDGKIDKCE 172 (213)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~-~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~e 172 (213)
.+++.-...+....-++.+.+.+|+||+..++..||....-.... ..|..+.+..++.-.+.+-..+|.|+||.+|++|
T Consensus 223 sFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeE 302 (362)
T KOG4251|consen 223 SFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEE 302 (362)
T ss_pred HHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHH
Confidence 888765545666677888999999999999999999886432111 1245555555666666677788999999999999
Q ss_pred HHHHHh
Q 040252 173 WQNFVS 178 (213)
Q Consensus 173 F~~~l~ 178 (213)
+..++-
T Consensus 303 Le~y~d 308 (362)
T KOG4251|consen 303 LEDYVD 308 (362)
T ss_pred HHhhcC
Confidence 999864
No 75
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.98 E-value=8e-05 Score=53.27 Aligned_cols=99 Identities=23% Similarity=0.303 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHH
Q 040252 70 LFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETI 149 (213)
Q Consensus 70 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~ 149 (213)
.+.+..|..+|.|+||.|+-+++..+++.+.. ...++.+..++. ...|.|+..-|..++ |..++...-
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~elDaM~~----Ea~gPINft~FLTmf-------GekL~gtdp 99 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEELDAMMK----EAPGPINFTVFLTMF-------GEKLNGTDP 99 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHH----hCCCCeeHHHHHHHH-------HHHhcCCCH
Confidence 34588899999999999999999999988875 466667776665 456899998888877 444444344
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 150 EIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 150 ~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
++.+...|+.+|.++.|.|.-+.++.+|...
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh
Confidence 5667788899999999999999999999764
No 76
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.90 E-value=9.4e-06 Score=40.26 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=16.5
Q ss_pred HHhcccccCCCCCcccHHHHHHH
Q 040252 110 DFSFKLYDLDNTGFIERQEVKQM 132 (213)
Q Consensus 110 ~~~F~~~D~d~~g~I~~~E~~~~ 132 (213)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777765
No 77
>PF14658 EF-hand_9: EF-hand domain
Probab=97.90 E-value=4.7e-05 Score=46.85 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=42.4
Q ss_pred HHHhhcCCCCCCCcccHHHHHHHHHhcCc--cchHHHHHHHHHhcCCCC-CcccHHHHHHHHhh
Q 040252 38 LFKMISSSVVDDGLISKEEFQLALFKNRK--KENLFANRIFDLFDVKRK-GVIDFSDFVRSLSV 98 (213)
Q Consensus 38 ~F~~~d~~~~~~G~i~~~ef~~~l~~~~~--~~~~~~~~l~~~~d~~~~-g~i~~~ef~~~~~~ 98 (213)
.|+.+|++ +.|.|...++..+|...+. +.+..++.+.+.+|+++. |.|+++.|+.+|..
T Consensus 3 ~F~~fD~~--~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQ--KTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCc--CCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 46777777 7888888888777765443 344566888888888776 88888888877754
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.82 E-value=6.7e-05 Score=62.81 Aligned_cols=57 Identities=35% Similarity=0.469 Sum_probs=47.5
Q ss_pred CCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 102 NAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 102 ~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
.......+..+|+.+|.+++|.|+.+||.. .+.+|..+|.|++|.|+++||...+..
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 345566788999999999999999999832 134469999999999999999998864
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.75 E-value=0.00027 Score=48.03 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=55.3
Q ss_pred CChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 103 APQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 103 ~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
.........+|+..|. ++|.|+.++.+.++.. .+++...+..++ ...|.+++|.++.+||+-++.--
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~------S~L~~~~L~~IW----~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMK------SGLPRDVLAQIW----NLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH------TTSSHHHHHHHH----HHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH------cCCCHHHHHHHH----hhhcCCCCCcCCHHHHHHHHHHH
Confidence 3455678889999985 6899999999998864 488888888777 89999999999999999988753
No 80
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.69 E-value=0.00017 Score=51.20 Aligned_cols=97 Identities=18% Similarity=0.304 Sum_probs=73.0
Q ss_pred HHHHHHHhhcCCCCCCCcccHHHHHHHHHhc--CccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHH--
Q 040252 34 ALFELFKMISSSVVDDGLISKEEFQLALFKN--RKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKI-- 109 (213)
Q Consensus 34 ~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l-- 109 (213)
++..+|..- |.|.++..+|...+.-. .-+-...+.-.|+.+|-|+++.|.-.++...+..+.+.....++.
T Consensus 75 ri~e~FSeD-----G~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~ 149 (189)
T KOG0038|consen 75 RICEVFSED-----GRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVEL 149 (189)
T ss_pred HHHHHhccC-----CCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHH
Confidence 455666654 89999999999776321 112233456778889999999999999999888877666555543
Q ss_pred --HHhcccccCCCCCcccHHHHHHHHHH
Q 040252 110 --DFSFKLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 110 --~~~F~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
..+....|.||+|.|+..||..++..
T Consensus 150 i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 150 ICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 45667789999999999999998743
No 81
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00031 Score=47.76 Aligned_cols=67 Identities=25% Similarity=0.318 Sum_probs=55.3
Q ss_pred HHhcccccCCCCCcccHHHHHHHHHHHHhh--c----ccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 040252 110 DFSFKLYDLDNTGFIERQEVKQMLIALLCE--S----EMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNF 176 (213)
Q Consensus 110 ~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~--~----~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~ 176 (213)
--.|.+.|.|++|.|+--|+..++...-.. . -+-.++.+++.++..+++.-|.|+||.|+|.||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 347899999999999999999988765321 1 234467889999999999999999999999999874
No 82
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0009 Score=59.29 Aligned_cols=166 Identities=18% Similarity=0.264 Sum_probs=121.3
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC----
Q 040252 25 TAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFH---- 100 (213)
Q Consensus 25 ~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~---- 100 (213)
..+|.+|-......|..+-+ +.|+|+-.+-+.+|.+.+++... +..|+...|.|+||.++-.||..+|....
T Consensus 8 WavT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~LP~~V-LaqIWALsDldkDGrmdi~EfSIAmkLi~lkLq 83 (1118)
T KOG1029|consen 8 WAVTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSGLPTPV-LAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQ 83 (1118)
T ss_pred cccchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcCCChHH-HHHHHHhhhcCccccchHHHHHHHHHHHHHHhc
Confidence 34677777778888888866 68999999988888877766443 57889999999999999999987765310
Q ss_pred C---------------------------------------------------------------------CC--------
Q 040252 101 P---------------------------------------------------------------------NA-------- 103 (213)
Q Consensus 101 ~---------------------------------------------------------------------~~-------- 103 (213)
. ++
T Consensus 84 G~~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~s 163 (1118)
T KOG1029|consen 84 GIQLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNS 163 (1118)
T ss_pred CCcCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCC
Confidence 0 00
Q ss_pred ----------------------------ChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 040252 104 ----------------------------PQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDK 155 (213)
Q Consensus 104 ----------------------------~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~ 155 (213)
...-+++.+|...|+..+|+++...=+.+|. ...++..++..++
T Consensus 164 pl~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~------qS~Lpq~~LA~IW-- 235 (1118)
T KOG1029|consen 164 PLPHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALG------QSGLPQNQLAHIW-- 235 (1118)
T ss_pred CCCCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHH------hcCCchhhHhhhe--
Confidence 0112467899999999999999999888874 3578887777777
Q ss_pred HHHhhCCCCCCcccHHHHHHHHhcChhHHHhhCcCccccccccC--Ccccccc
Q 040252 156 TFLDADVNQDGKIDKCEWQNFVSKNPSLLKIMTLPYLRDITTSF--PSFIFNS 206 (213)
Q Consensus 156 ~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 206 (213)
..-|.|+||.++-+||+=.+.--.... -+.+..-.+..++ |+|+.-+
T Consensus 236 --~LsDvd~DGkL~~dEfilam~liema~--sGq~lP~tlP~E~Vpp~~r~~r 284 (1118)
T KOG1029|consen 236 --TLSDVDGDGKLSADEFILAMHLIEMAK--SGQPLPKTLPPELVPPSFRSSR 284 (1118)
T ss_pred --eeeccCCCCcccHHHHHHHHHHHHHHh--cCCCCCCCCChhhcCccccccc
Confidence 788999999999999987665422222 2445555555555 6666543
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.64 E-value=0.00015 Score=60.76 Aligned_cols=54 Identities=30% Similarity=0.444 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHH
Q 040252 69 NLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 69 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~ 136 (213)
...+..+|+.+|.+++|.|+.+||+. ...+|..+|.|++|.|+.+||..++...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 44578999999999999999999952 4678999999999999999999998765
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.61 E-value=9e-05 Score=36.69 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=20.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH
Q 040252 154 DKTFLDADVNQDGKIDKCEWQNFV 177 (213)
Q Consensus 154 ~~~f~~~d~~~~g~Is~~eF~~~l 177 (213)
+.+|+.+|.|+||.|+.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 346699999999999999999864
No 85
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.53 E-value=0.0029 Score=56.21 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCCh
Q 040252 27 FSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQ 105 (213)
Q Consensus 27 ~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 105 (213)
.......-+...|+..|++ ++|.++..+...++...... ....+.++|+..+..+++.+.+.+|..+...... .+
T Consensus 130 ~~~~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~-rp- 205 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK-RP- 205 (746)
T ss_pred hcchHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc-Cc-
Confidence 3444455688889999998 99999999988887665543 4556789999998889999999999998776653 22
Q ss_pred HHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 106 EDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 106 ~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
.+..+|..+-.+ .++++.+++..++...- ...+.+...++++++.+-..-.....+.++.+.|.++|...
T Consensus 206 --ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q--~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 206 --EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ--GEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred --hHHHHHHHHhCC-CCccCHHHHHHHHHHhc--ccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 677788777655 89999999999998751 12566777788888555333344556779999999999653
No 86
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.52 E-value=0.00042 Score=58.85 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=63.9
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccc----hHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 040252 22 ASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKE----NLFANRIFDLFDVKRKGVIDFSDFVRSLS 97 (213)
Q Consensus 22 ~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 97 (213)
.....+|.+|++.+.+.|.+.| + ++|+|+..++..++....... ...++.+....+.+.+|.|+|++|+.++.
T Consensus 8 ~~~~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 8 WLQSQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred hhcccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 3456699999999999999999 5 899999999999986544333 56689999999999999999999999765
Q ss_pred hhC
Q 040252 98 VFH 100 (213)
Q Consensus 98 ~~~ 100 (213)
.+.
T Consensus 85 ~l~ 87 (627)
T KOG0046|consen 85 NLK 87 (627)
T ss_pred hhh
Confidence 543
No 87
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.49 E-value=0.00033 Score=58.35 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCC---CCChHHHHHHhcccccCCCCCcccHHHHHHHHHHH
Q 040252 72 ANRIFDLFDVKRKGVIDFSDFVRSLSVFHP---NAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 72 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~---~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~ 136 (213)
++.+|+.+|.|++|.|+.+||..++..+.. ..-..+.+..+-+.+|.|+||.|+.+||..+++-+
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 589999999999999999999999877653 23346677888899999999999999999988654
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.44 E-value=0.00047 Score=40.03 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=37.1
Q ss_pred cccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 123 FIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 123 ~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
.++..|++.+++.+ +..+++.-+..++ +..|.+++|.+..+||+.++..
T Consensus 1 kmsf~Evk~lLk~~----NI~~~~~yA~~LF----q~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM----NIEMDDEYARQLF----QECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHT----T----HHHHHHHH----HHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----ccCcCHHHHHHHH----HHhcccCCCCccHHHHHHHHHH
Confidence 36889999999887 7888877666555 9999999999999999998764
No 89
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.39 E-value=0.00071 Score=57.16 Aligned_cols=88 Identities=24% Similarity=0.376 Sum_probs=58.0
Q ss_pred CCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC--CC----------------------
Q 040252 48 DDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHP--NA---------------------- 103 (213)
Q Consensus 48 ~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~--~~---------------------- 103 (213)
+||.|+.+||+ ++....-.++......|..+|..++|.++++++...+....- ..
T Consensus 87 KDglisf~eF~-afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~n 165 (694)
T KOG0751|consen 87 KDGLISFQEFR-AFESVLCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLN 165 (694)
T ss_pred ccccccHHHHH-HHHhhccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhcc
Confidence 67778888777 443222223445577777777777777777777776643210 00
Q ss_pred ----------ChHHHHHHhcccccCCCCCcccHHHHHHHHHHH
Q 040252 104 ----------PQEDKIDFSFKLYDLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 104 ----------~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~ 136 (213)
-..+..+++|+..|..++|.|+.=+++..+-.+
T Consensus 166 y~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 166 YAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhh
Confidence 012335678999999999999998888887655
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.27 E-value=6.5e-05 Score=51.95 Aligned_cols=63 Identities=30% Similarity=0.493 Sum_probs=41.4
Q ss_pred CChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 040252 103 APQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQN 175 (213)
Q Consensus 103 ~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~ 175 (213)
......+.+.|..+|.|+||.|+..|+..+...+ ...+. -++.++...|.|+||.||..||..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-------~~~e~---C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-------MPPEH---CARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-------STTGG---GHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-------hhhHH---HHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4556678899999999999999999998875321 11111 235556899999999999999975
No 91
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.24 E-value=0.0027 Score=60.13 Aligned_cols=98 Identities=22% Similarity=0.311 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhCCC------CChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCC
Q 040252 71 FANRIFDLFDVKRKGVIDFSDFVRSLSVFHPN------APQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKL 144 (213)
Q Consensus 71 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~------~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l 144 (213)
...-+|..||.+.+|.+++.+|..++..+..+ +.++-.++.+....|++.+|+|+..+...+|-. ++...-.
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~--~ETeNI~ 2331 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS--KETENIL 2331 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh--ccccccc
Confidence 35789999999999999999999988765422 233447899999999999999999999998743 2223345
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 040252 145 ADETIEIILDKTFLDADVNQDGKIDKCEWQN 175 (213)
Q Consensus 145 ~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~ 175 (213)
+.++++..+ +..+. +..+|+.++...
T Consensus 2332 s~~eIE~Af----raL~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2332 SSEEIEDAF----RALDA-GKPYVTKEELYQ 2357 (2399)
T ss_pred chHHHHHHH----HHhhc-CCccccHHHHHh
Confidence 556666666 78887 666788776643
No 92
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.14 E-value=0.0022 Score=37.25 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 040252 52 ISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 52 i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 96 (213)
++.+++...|...... .+.++..+|...|.+++|.++-+||..+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 4455555555544443 33445555555555555555555555544
No 93
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.13 E-value=0.0015 Score=56.94 Aligned_cols=112 Identities=23% Similarity=0.382 Sum_probs=84.8
Q ss_pred CCHHHHHhhcCCCHHHHHHHHHHHHhhcC-CCCC--CC---------cccHHHHHHHHHhcC--ccchHHHHHHHHHhcC
Q 040252 16 EDPVLLASQTAFSVSEVEALFELFKMISS-SVVD--DG---------LISKEEFQLALFKNR--KKENLFANRIFDLFDV 81 (213)
Q Consensus 16 ~~~~~~~~~~~~s~~ei~~l~~~F~~~d~-~~~~--~G---------~i~~~ef~~~l~~~~--~~~~~~~~~l~~~~d~ 81 (213)
..++.+.+.+.+|..++..++++|..--. .+.+ .. +++..+|...+.... .....++.++|..+|.
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 45888999999999999999999986321 1001 11 133333433332211 1234567999999999
Q ss_pred CCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHH
Q 040252 82 KRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEV 129 (213)
Q Consensus 82 ~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~ 129 (213)
+.+|.++|.+++..+..+.. +..-++++.+|+++|.+++ ..+.+|.
T Consensus 567 s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999999999999985 8888999999999999999 9998888
No 94
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.08 E-value=0.0011 Score=34.49 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=10.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHH
Q 040252 73 NRIFDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 73 ~~l~~~~d~~~~g~i~~~ef~~~~ 96 (213)
+.+|+.+|.+++|.|+++||..++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHH
Confidence 344444444444444444444444
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.87 E-value=0.0072 Score=50.84 Aligned_cols=130 Identities=20% Similarity=0.236 Sum_probs=88.7
Q ss_pred HHHHHHhhcCCCCCCCcccHHHHHHHHH-----hcC----ccc------hHHHHHH---HHHhcCCCCCcccHHHHHHHH
Q 040252 35 LFELFKMISSSVVDDGLISKEEFQLALF-----KNR----KKE------NLFANRI---FDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 35 l~~~F~~~d~~~~~~G~i~~~ef~~~l~-----~~~----~~~------~~~~~~l---~~~~d~~~~g~i~~~ef~~~~ 96 (213)
+.+.|--+++. +.|.|+.+++.+... .+. .+. -.-...+ |..+|.+.+|.|+-++...+.
T Consensus 227 i~rIFy~~nrs--~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 227 IQRIFYYLNRS--RTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred hhhhheeeCCc--cCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 44555667777 899999999875421 100 000 0112344 778899999999999988765
Q ss_pred hhhCCCCChHHHHHHhcc----cccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHH
Q 040252 97 SVFHPNAPQEDKIDFSFK----LYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCE 172 (213)
Q Consensus 97 ~~~~~~~~~~~~l~~~F~----~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~e 172 (213)
... ...-.+..+|. .+-...+|.|+.++|..++-++ ...-++.-+ +..|+-+|.+++|.|+..|
T Consensus 305 d~t----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~----e~k~t~~Sl----eYwFrclDld~~G~Lt~~e 372 (493)
T KOG2562|consen 305 DHT----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE----EDKDTPASL----EYWFRCLDLDGDGILTLNE 372 (493)
T ss_pred ccc----hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh----ccCCCccch----hhheeeeeccCCCcccHHH
Confidence 332 23455677887 4445678899999999998765 333344334 5556999999999999999
Q ss_pred HHHHHh
Q 040252 173 WQNFVS 178 (213)
Q Consensus 173 F~~~l~ 178 (213)
...+..
T Consensus 373 l~~fye 378 (493)
T KOG2562|consen 373 LRYFYE 378 (493)
T ss_pred HHHHHH
Confidence 877664
No 96
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.87 E-value=0.0015 Score=45.17 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHH
Q 040252 67 KENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQ 131 (213)
Q Consensus 67 ~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~ 131 (213)
.....+.-.|..+|.|++|.|+-.|+..+...+ .+.+.-++..|+.+|.|+||.||..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344556888999999999999999998876544 34455678899999999999999999864
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.84 E-value=0.0037 Score=53.28 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=50.7
Q ss_pred HHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 040252 108 KIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVS 178 (213)
Q Consensus 108 ~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~ 178 (213)
.++..|...| +++|+|+..|+..++... +... .....+.++.+....+.|.+|.|++++|+..+.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~----~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKA----KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHh----cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 4677899999 999999999999999876 3333 233334444555999999999999999999553
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.75 E-value=0.0061 Score=39.53 Aligned_cols=70 Identities=20% Similarity=0.344 Sum_probs=50.8
Q ss_pred HHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 109 IDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 109 l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
+..+|+.+.. +.+.|+.++|..+|+.-- ....++..++..++...-........+.+|+++|.++|....
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ--~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQ--GEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTS--S-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHh--ccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 5678888855 789999999999997541 113567888888885543333223568999999999997643
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.60 E-value=0.0015 Score=32.26 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=16.6
Q ss_pred HHHhcccccCCCCCcccHHHHHHHHH
Q 040252 109 IDFSFKLYDLDNTGFIERQEVKQMLI 134 (213)
Q Consensus 109 l~~~F~~~D~d~~g~I~~~E~~~~l~ 134 (213)
++.+|+.+|.+++|.|+..||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34566666666666677766666654
No 100
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.50 E-value=0.015 Score=38.23 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=50.8
Q ss_pred HHHHHHhcccccCCCCCcccHHHHHHHHHHHHhh---cccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChh
Q 040252 106 EDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCE---SEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPS 182 (213)
Q Consensus 106 ~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~---~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~ 182 (213)
.++++.+|+.+ .|++|.++...|..++..++.- .|...+=.-++..++.+|... .....|+.++|+.|+...|-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 47899999999 6889999999999999887432 122111112677788888776 24568999999999999987
Q ss_pred HHHhh
Q 040252 183 LLKIM 187 (213)
Q Consensus 183 ~~~~~ 187 (213)
.+.++
T Consensus 79 ~lVWL 83 (90)
T PF09069_consen 79 SLVWL 83 (90)
T ss_dssp TTTHH
T ss_pred eeeHH
Confidence 66554
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.23 E-value=0.0091 Score=29.26 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 154 DKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 154 ~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
+.+|+.+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 34568999999999999999998864
No 102
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.039 Score=37.74 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=44.6
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHh-----------cCccchHH----HHHHHHHhcCCCCCccc
Q 040252 24 QTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFK-----------NRKKENLF----ANRIFDLFDVKRKGVID 88 (213)
Q Consensus 24 ~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~-----------~~~~~~~~----~~~l~~~~d~~~~g~i~ 88 (213)
.-.+|+++++-- .|..+|-+ +++.|+=-++..++.. .+..++.. +..+++--|.|++|.|+
T Consensus 60 ~a~mtpeqlqfH--YF~MHDld--knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~ID 135 (144)
T KOG4065|consen 60 VAKMTPEQLQFH--YFSMHDLD--KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVID 135 (144)
T ss_pred hhhCCHHHHhhh--hhhhhccC--cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceee
Confidence 456788877643 47777777 8899998888878732 11222222 34455555777888888
Q ss_pred HHHHHHH
Q 040252 89 FSDFVRS 95 (213)
Q Consensus 89 ~~ef~~~ 95 (213)
|-||+..
T Consensus 136 YgEflK~ 142 (144)
T KOG4065|consen 136 YGEFLKR 142 (144)
T ss_pred HHHHHhh
Confidence 8888753
No 103
>PLN02952 phosphoinositide phospholipase C
Probab=95.93 E-value=0.082 Score=46.82 Aligned_cols=95 Identities=12% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCCcccHHHHHHHHhhhC-CCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhC
Q 040252 83 RKGVIDFSDFVRSLSVFH-PNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDAD 161 (213)
Q Consensus 83 ~~g~i~~~ef~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d 161 (213)
+.|.++|++|..+...+. +......++..+|..+.. +.+.|+.++|..+|...-.. ...+...++.++..++....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e--~~~~~~~~~~i~~~~~~~~~ 89 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDE--LDCTLAEAQRIVEEVINRRH 89 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCC--cCCCHHHHHHHHHHHHhhcc
Confidence 458999999988876654 223467789999999964 44789999999999875111 23566777777765543322
Q ss_pred ---CCCCCcccHHHHHHHHhcC
Q 040252 162 ---VNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 162 ---~~~~g~Is~~eF~~~l~~~ 180 (213)
....+.++++.|..+|...
T Consensus 90 ~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 90 HVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccccCcCHHHHHHHHcCc
Confidence 1233469999999999753
No 104
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.83 E-value=0.0056 Score=49.27 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=55.7
Q ss_pred HHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHH
Q 040252 107 DKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLL 184 (213)
Q Consensus 107 ~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~ 184 (213)
..+.+-|..+|.|.++.|...|++-+=.-+. .......-.+.+++-.|.|+|..||+.||...|...++-.
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~-------k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~~ 403 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLL-------KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKERG 403 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHH-------hhccHHHHhhhcchhcccCCCceecHHHHhhhhccccccC
Confidence 3578999999999999999999887754432 1223345567777999999999999999999998776533
No 105
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.90 E-value=0.19 Score=35.47 Aligned_cols=98 Identities=16% Similarity=0.287 Sum_probs=54.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHH-HHHH
Q 040252 18 PVLLASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDF-VRSL 96 (213)
Q Consensus 18 ~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef-~~~~ 96 (213)
++.+++...+..-++..+.+.|..+.-....+..|+..++..+| ..+|........+..+.... +.
T Consensus 26 LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L-----------~~iy~~l~~~~p~~~~i~~~~v~-- 92 (127)
T PF09068_consen 26 LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLL-----------SSIYEFLNKRLPTLHQIPSRPVD-- 92 (127)
T ss_dssp HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHH-----------HHHHHHHHHHSTTS--HH-------
T ss_pred HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHH-----------HHHHHHHHHHCCCCCCCCchhHH--
Confidence 77888888888888888889998875432125568888887666 44443333222222221100 00
Q ss_pred hhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHH
Q 040252 97 SVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLI 134 (213)
Q Consensus 97 ~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~ 134 (213)
...+-.+.++...||.+++|.|+.-.++..+.
T Consensus 93 ------~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 93 ------LAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp ------HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 01112367788888888888888888887664
No 106
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.81 E-value=0.069 Score=48.10 Aligned_cols=95 Identities=20% Similarity=0.384 Sum_probs=78.7
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCC
Q 040252 84 KGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVN 163 (213)
Q Consensus 84 ~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~ 163 (213)
++ +++++|. ....+.+.+++..|..+|. ++|.++.+++..++.................++...++...|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 46 8999998 3358889999999999998 99999999999998877544345555667777888888999999
Q ss_pred CCCcccHHHHHHHHhcChhHHHh
Q 040252 164 QDGKIDKCEWQNFVSKNPSLLKI 186 (213)
Q Consensus 164 ~~g~Is~~eF~~~l~~~~~~~~~ 186 (213)
+.|.+.++++..++...|.....
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~~ 96 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLFA 96 (646)
T ss_pred ccceeeecchhHHHHhchHHHHH
Confidence 99999999999999988876654
No 107
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.73 E-value=0.1 Score=42.25 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHH-hcCc-cchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHH
Q 040252 33 EALFELFKMISSSVVDDGLISKEEFQLALF-KNRK-KENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKID 110 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~-~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~ 110 (213)
..+...|..+|.. ++|.++.-+.-..+. -++. .....++--|+.++..-||.+.-.+|..++.... +-..-.+-
T Consensus 259 d~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--Ccceeecc
Confidence 4456677777777 889888777655552 2232 3445579999999999999999988888776543 44444566
Q ss_pred HhcccccCCCCCcccHHHHHHHHH
Q 040252 111 FSFKLYDLDNTGFIERQEVKQMLI 134 (213)
Q Consensus 111 ~~F~~~D~d~~g~I~~~E~~~~l~ 134 (213)
-.|+..+...+|+|+.++|+.+..
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHH
Confidence 789999999999999999999863
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.52 E-value=0.2 Score=46.05 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=81.1
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccch------HHHHHHHHHhcCCCCCcccHHHHHHH
Q 040252 22 ASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKEN------LFANRIFDLFDVKRKGVIDFSDFVRS 95 (213)
Q Consensus 22 ~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~------~~~~~l~~~~d~~~~g~i~~~ef~~~ 95 (213)
......++..+..+...|..++.. ..|.++.++|..+|...+-... ..+.++.+..|.+..|.+++.+|...
T Consensus 736 R~sk~~sQ~v~~ElrAle~~~~~~--d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~dd 813 (890)
T KOG0035|consen 736 RDSKGTSQYVLDELRALENEQDKI--DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDD 813 (890)
T ss_pred hcccchhHHHHHHHHHHHhHHHHh--hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhH
Confidence 333445666777788888888776 7888999999999977664322 23455555666666789999999999
Q ss_pred HhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHH
Q 040252 96 LSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQ 131 (213)
Q Consensus 96 ~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~ 131 (213)
+..-....+....+..+|+.+-++.. +|..+||..
T Consensus 814 l~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 814 LEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 97766667888889999999976665 888888887
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.24 E-value=0.081 Score=43.11 Aligned_cols=64 Identities=20% Similarity=0.396 Sum_probs=50.4
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
-...+-++|..+|.|.+|.|+..||..+-. .-. +.-++-+|...|...||.|+-.||...+.+.
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l--------dkn----E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIEL--------DKN----EACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhc--------cCc----hhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 456789999999999999999999998742 111 1235566689999999999999999988643
No 110
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.14 E-value=0.13 Score=33.15 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhhhCCC-CChHHHHHHhcccccCC----CCCcccHHHHHHHH
Q 040252 73 NRIFDLFDVKRKGVIDFSDFVRSLSVFHPN-APQEDKIDFSFKLYDLD----NTGFIERQEVKQML 133 (213)
Q Consensus 73 ~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~l~~~F~~~D~d----~~g~I~~~E~~~~l 133 (213)
..+|..+.. +.+.|+.++|..++....+. ....+.+..+++.|..+ ..+.++.++|..+|
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 455555543 44556666666655444322 12344555555555433 25677777777766
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=0.19 Score=45.30 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=58.6
Q ss_pred hcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 040252 24 QTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSV 98 (213)
Q Consensus 24 ~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 98 (213)
...+....-.....+|..+|+. .+|+++-.+-+.+|...+++... +..|+...|.|+||.++-+||+.+++.
T Consensus 186 eWAVp~~~klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~Lpq~~-LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 186 EWAVPQHNKLKYRQLFNALDKT--RSGYLSGQQARSALGQSGLPQNQ-LAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hccccchhhhHHHHHhhhcccc--cccccccHHHHHHHHhcCCchhh-HhhheeeeccCCCCcccHHHHHHHHHH
Confidence 3445555566788899999998 99999999999899887766543 478899999999999999999987754
No 112
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.26 E-value=0.065 Score=43.35 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHH
Q 040252 72 ANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 72 ~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
+.-.|..+|.|.++.|+-.|+..+-..+..-.....-.+.+|+..|.|+|..|++.|+...|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3456888999999999988877765555444566677889999999999999999999998754
No 113
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=0.071 Score=49.39 Aligned_cols=142 Identities=22% Similarity=0.389 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC--C-
Q 040252 26 AFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHP--N- 102 (213)
Q Consensus 26 ~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~--~- 102 (213)
.++..+.......|...++ .+|.++-...+-+|........ ...+++...|.+.+|.++..||...++.... .
T Consensus 122 ~~~~qe~aky~q~f~s~~p---~~g~~sg~~~~pil~~s~Lp~~-~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSP---SNGLLSGDKAKPILLNSKLPSD-VLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCHHHHHHHHHHHhccCC---CCCccccchhhhhhhcCCCChh-hhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 3778888888888999988 6899998888877766655543 3478899999999999999999987754210 0
Q ss_pred -------------------------------------------------------------------------------C
Q 040252 103 -------------------------------------------------------------------------------A 103 (213)
Q Consensus 103 -------------------------------------------------------------------------------~ 103 (213)
.
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence 0
Q ss_pred --ChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 104 --PQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 104 --~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
.....+..+|...|.+.+|.|+..+....+.. .+++...+..++ ...|.++.|.+++.+|.-.+....
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~------~gl~~~~l~~~w----~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP------FGLSKPRLAHVW----LLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCccccccccccccc------CCCChhhhhhhh----hhcchhccCcccccccchhhhhhh
Confidence 01233455788999999999999998887642 467777777777 788999999999998877664433
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=0.37 Score=41.34 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=58.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 040252 21 LASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 21 ~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 100 (213)
+.....+++++-+++.+-|+.+-++ .+|.|+=.--+.+|.+..+. ..++..||...|.+.||.+++.||..+++...
T Consensus 219 ~d~pw~IT~EQReYYvnQFrtvQpD--p~gfisGsaAknFFtKSklp-i~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 219 LDTPWQITPEQREYYVNQFRTVQPD--PHGFISGSAAKNFFTKSKLP-IEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred cCCccccCHHHHHHHHhhhhcccCC--cccccccHHHHhhhhhccCc-hHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 3445667888888888889888877 78888877767666544333 34468888899999999999999998887654
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.85 E-value=0.19 Score=41.01 Aligned_cols=104 Identities=16% Similarity=0.062 Sum_probs=72.3
Q ss_pred cCCCHHHHHH----HHHHHHhhcCCCCCCCcccHHHHHHH---HHh-cCccchHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 040252 25 TAFSVSEVEA----LFELFKMISSSVVDDGLISKEEFQLA---LFK-NRKKENLFANRIFDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 25 ~~~s~~ei~~----l~~~F~~~d~~~~~~G~i~~~ef~~~---l~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 96 (213)
...|..++.+ |.+=|..+-.+ .++......+... |-. .+......+.=||+.+|.|.++.++..|...+-
T Consensus 199 ~~Ct~qeL~~lg~RL~dWF~~lhe~--s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 199 YACTDQELRRLGNRLRDWFKALHED--SSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhh--hhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 4477777775 45555555444 4444444333322 211 122233456889999999999999999998754
Q ss_pred hhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHH
Q 040252 97 SVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 97 ~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
....+.-++-.|...|...+|.|+..|+...+..
T Consensus 277 -----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 277 -----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred -----ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 3556678899999999999999999999988753
No 116
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.39 E-value=0.58 Score=34.62 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=30.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHHhhCc
Q 040252 152 ILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLKIMTL 189 (213)
Q Consensus 152 ~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~~~ 189 (213)
-++.+|...+..+.+.+|+.|..+++..+.+..+.+++
T Consensus 97 kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW 134 (174)
T PF05042_consen 97 KFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGW 134 (174)
T ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchh
Confidence 34455589998888999999999999998887766655
No 117
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.26 E-value=1 Score=40.63 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHH
Q 040252 69 NLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 69 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~ 136 (213)
..++..+|...|.+++|.+++.+-..+...+. .......+...|+..+..+++.+...++..+...+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 45678999999999999999999888876654 35667788889998899999999999999987654
No 118
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=92.04 E-value=0.92 Score=39.90 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=94.3
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHh-cCcc-chHH---HHHHHHHhcCC--CCCcccHHHHHH
Q 040252 22 ASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFK-NRKK-ENLF---ANRIFDLFDVK--RKGVIDFSDFVR 94 (213)
Q Consensus 22 ~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~-~~~~-~~~~---~~~l~~~~d~~--~~g~i~~~ef~~ 94 (213)
+....+.+.-++.+.+.|...|.+ .+|.++-.++...=.. .+.+ .... +.......-++ .+..++..-|+.
T Consensus 184 a~~qelkp~~v~al~RIFki~D~d--~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLf 261 (625)
T KOG1707|consen 184 AEEQELKPRCVKALKRIFKISDSD--NDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLF 261 (625)
T ss_pred cccccccHHHHHHHHHHHhhhccc--cccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHH
Confidence 445567888999999999999998 9999998887632111 1111 1112 23333332222 245678888887
Q ss_pred HHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcc--cCCCHHHHHHHHHHHHHhhCCCCCCcccHHH
Q 040252 95 SLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESE--MKLADETIEIILDKTFLDADVNQDGKIDKCE 172 (213)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~--~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~e 172 (213)
+-..+.. +...+....+.+.|--+.+-.++.+=+.--+. ..++ ..+++.-+ ..+..+|..+|.|+||.++-.|
T Consensus 262 L~~lfie-rgr~EttW~iLR~fgY~DsleL~~~~l~p~~~---~~p~~s~ELs~~~~-~Fl~~~f~~~D~d~Dg~L~p~E 336 (625)
T KOG1707|consen 262 LNTLFIE-RGRHETTWTILRKFGYTDSLELTDEYLPPRLK---VPPDQSVELSPKGY-RFLVDVFEKFDRDNDGALSPEE 336 (625)
T ss_pred HHHHHHH-hccccchhhhhhhcCCcchhhhhhhhcCcccc---CCCCcceeccHHHH-HHHHHHHHhccCCCCCCcCHHH
Confidence 7665553 44445555667777555543333332221110 0111 34454444 3556778999999999999999
Q ss_pred HHHHHhcChhHH
Q 040252 173 WQNFVSKNPSLL 184 (213)
Q Consensus 173 F~~~l~~~~~~~ 184 (213)
+..+....|..-
T Consensus 337 l~~LF~~~P~~p 348 (625)
T KOG1707|consen 337 LKDLFSTAPGSP 348 (625)
T ss_pred HHHHhhhCCCCC
Confidence 998888777543
No 119
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=91.78 E-value=0.92 Score=36.68 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=58.0
Q ss_pred cHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhc-ccCCCHHHHH-------HHHHHHHHh
Q 040252 88 DFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCES-EMKLADETIE-------IILDKTFLD 159 (213)
Q Consensus 88 ~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~-~~~l~~~~~~-------~~~~~~f~~ 159 (213)
+-.++...|.......+..-.-+..|.+.|.|++|.++-.|+..++..=+... .+...+.... .+-...++.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 34455555544332222233356789999999999999999999876543221 2222222221 122334578
Q ss_pred hCCCCCCcccHHHHHHHHhc
Q 040252 160 ADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 160 ~d~~~~g~Is~~eF~~~l~~ 179 (213)
.|.|.|.-||.+||++...+
T Consensus 305 vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cccchhhhhhHHHHHhhhhh
Confidence 99999999999999987654
No 120
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=91.49 E-value=4.5 Score=36.79 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=101.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHh--------cC--c----cchHHHHHHHHHhcCCC
Q 040252 18 PVLLASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFK--------NR--K----KENLFANRIFDLFDVKR 83 (213)
Q Consensus 18 ~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~--------~~--~----~~~~~~~~l~~~~d~~~ 83 (213)
++.+++...+..-.+.-+.+.|+.++-. .++..++..+...+|.. .+ . ..+.-+.-+++.+|...
T Consensus 405 lr~LQK~l~ldlv~ltl~l~if~~h~l~-~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R 483 (966)
T KOG4286|consen 405 LRRLQKALCLDLLSLSLALDALDQHNLK-QNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGR 483 (966)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHhccc-ccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCC
Confidence 4556666556666666677777777543 02333555444434311 01 1 11222477899999999
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHh---------hc-ccCCCHHHHHHHH
Q 040252 84 KGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLC---------ES-EMKLADETIEIIL 153 (213)
Q Consensus 84 ~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~---------~~-~~~l~~~~~~~~~ 153 (213)
+|.|..-+|...+..+++ ...+++++.+|.....++.-.+ ...|..++..+.. +. |.++.+ -+
T Consensus 484 ~g~irvls~ki~~i~lck-~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvep-----sv 556 (966)
T KOG4286|consen 484 TGRIRVLSFKIGIISLCK-AHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP-----SV 556 (966)
T ss_pred CcceEEeeehhhHHHHhc-chhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh-----HH
Confidence 999999999999988885 8889999999999876665443 4444444433311 11 234433 35
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHhcChhHHHh
Q 040252 154 DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLKI 186 (213)
Q Consensus 154 ~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~ 186 (213)
+.+|+ ..++...|+...|..|+...|-..-+
T Consensus 557 rsCF~--~v~~~pei~~~~f~dw~~~epqsmVw 587 (966)
T KOG4286|consen 557 RSCFQ--FVNNKPEIEAALFLDWMRLEPQSMVW 587 (966)
T ss_pred HHHHH--hcCCCCcchHHHHHHHhccCcchhhH
Confidence 56665 23555689999999999888865544
No 121
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.65 E-value=1.8 Score=31.61 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc----chHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 33 EALFELFKMISSSVVDDGLISKEEFQLALFKNRKK----ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~----~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
+.++..|..+-.. ....|+-..|.+++..+++- ....+..+|..+-..+...|+|++|+.++..+
T Consensus 2 ~~~F~~f~~fG~~--~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKK--NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTS--TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4455555555443 56779999999998765532 23346889999866666779999999988654
No 122
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=90.63 E-value=2.3 Score=31.53 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=45.6
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESE-MKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFV 177 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~-~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l 177 (213)
..++.+.+|..++..+.+.+|..|+..+++.-..... .......++=. .+ -..-.+.+|.+..|+.+.+.
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~--~~-y~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWG--AL-YILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHH--HH-HHHHcCcCCcEeHHHHhhhc
Confidence 4578999999999999999999999999976311000 01111122111 11 24456788999998887654
No 123
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.57 E-value=0.71 Score=40.41 Aligned_cols=79 Identities=8% Similarity=0.127 Sum_probs=65.7
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc-chHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 21 LASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK-ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 21 ~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
......++++++......|..+|.+ +.|+++..+..+.|...... ......++.+..|.+.+|.+...+|..++...
T Consensus 581 ~~~~i~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 581 MSIPIKLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred cccccccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 3445668999999999999999998 89999999999999766533 44556888999998889999999999988776
Q ss_pred CC
Q 040252 100 HP 101 (213)
Q Consensus 100 ~~ 101 (213)
..
T Consensus 659 ~~ 660 (680)
T KOG0042|consen 659 KN 660 (680)
T ss_pred hc
Confidence 64
No 124
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.35 E-value=0.56 Score=45.22 Aligned_cols=58 Identities=19% Similarity=0.402 Sum_probs=47.2
Q ss_pred hcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 040252 112 SFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVS 178 (213)
Q Consensus 112 ~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~ 178 (213)
.|+.||+||.|.|+..+|..++.. ..+.++.+++-++ .-...|.+...+|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-----~k~ytqse~dfll----scae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-----HKHYTQSEIDFLL----SCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-----cccchhHHHHHHH----HhhccCccccccHHHHHHHhc
Confidence 588899999999999999998754 3566777777776 566777888999999998663
No 125
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=90.11 E-value=0.69 Score=30.84 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCC---CCcccHHHHHHHHhhhC
Q 040252 29 VSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKR---KGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 29 ~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~---~g~i~~~ef~~~~~~~~ 100 (213)
.+....+...|+.+. .+|+|+...|..+++.. .+..++..||..+-... ...|+.+|+..++..+.
T Consensus 26 ~~~W~~VE~RFd~La----~dG~L~rs~Fg~CIGM~--dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 26 ADGWKEVEKRFDKLA----KDGLLPRSDFGECIGMK--DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp ---HHHHHHHHHHH-----BTTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhC----cCCcccHHHHHHhcCCc--ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 445788999999997 57999999999999543 46677888888874422 35788888888876554
No 126
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.52 E-value=2.6 Score=38.97 Aligned_cols=123 Identities=11% Similarity=0.196 Sum_probs=81.3
Q ss_pred CCCcccHHHHHHHHHhcCccchHHHHHHHHHhc--CCCCC-----cccHHHHHHHHhhhCCCCChHHHHHHhcccccCCC
Q 040252 48 DDGLISKEEFQLALFKNRKKENLFANRIFDLFD--VKRKG-----VIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDN 120 (213)
Q Consensus 48 ~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d--~~~~g-----~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~ 120 (213)
..|+|..+.+.+.+...... ..++....... .+++. ..+++.|..++..++. ..++..+|..+..++
T Consensus 161 ~~grip~knI~k~F~~~k~~--KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp----R~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 161 FEGRIPVKNIIKTFSADKKE--KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP----RPEIEEIFRKISGKK 234 (1189)
T ss_pred ccccccHHHHHHHhhcCCch--hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----chhHHHHHHHhccCC
Confidence 67888888887777433211 22233333321 12222 3566667776666653 246888999999999
Q ss_pred CCcccHHHHHHHHHHHHhh------cccCCCHHHHHHHHHHHHHhhCCC----CCCcccHHHHHHHHhcC
Q 040252 121 TGFIERQEVKQMLIALLCE------SEMKLADETIEIILDKTFLDADVN----QDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 121 ~g~I~~~E~~~~l~~~~~~------~~~~l~~~~~~~~~~~~f~~~d~~----~~g~Is~~eF~~~l~~~ 180 (213)
.-++|.++|.+++..--.. .-+...+..+..++ ..+..| ..|.++-+-|++++...
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~li----ekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLI----EKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHH----HHcCCchhhhhccccchhhhHHHhhCC
Confidence 8999999999998753111 13566778888888 555554 46899999999999873
No 127
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=88.11 E-value=1.2 Score=39.52 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=54.6
Q ss_pred ccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCC
Q 040252 87 IDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDG 166 (213)
Q Consensus 87 i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g 166 (213)
++|..|...+..+..-......+..+|+.+|.+++|.|+..++...+..+. ..++.+-++.+|+-.|.+++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~--------~~~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK--------AGDALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH--------hhhHHHHHHHHHhhccCCcc-
Confidence 556666665554443233445678899999999999999999999887662 11233445677888888888
Q ss_pred cccHHHH
Q 040252 167 KIDKCEW 173 (213)
Q Consensus 167 ~Is~~eF 173 (213)
....++-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 7666655
No 128
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.77 E-value=1.6 Score=37.72 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=49.5
Q ss_pred HHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 040252 109 IDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFV 177 (213)
Q Consensus 109 l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l 177 (213)
+..-|+..-.|-.|.|+-.--++++.+ ..++-.++..++ ...|.|.||.+++.||+..+
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtK------Sklpi~ELshIW----eLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTK------SKLPIEELSHIW----ELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhh------ccCchHHHHHHH----hhcccCccccccHHHHHhhH
Confidence 456788899999999999988888764 467777777777 78899999999999999987
No 129
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=87.60 E-value=4.7 Score=33.18 Aligned_cols=158 Identities=14% Similarity=0.216 Sum_probs=99.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhhcCC-CCCCCcccHHHHHHHH----HhcC--ccc----------hHHHHHHHHHhc
Q 040252 18 PVLLASQTAFSVSEVEALFELFKMISSS-VVDDGLISKEEFQLAL----FKNR--KKE----------NLFANRIFDLFD 80 (213)
Q Consensus 18 ~~~~~~~~~~s~~ei~~l~~~F~~~d~~-~~~~G~i~~~ef~~~l----~~~~--~~~----------~~~~~~l~~~~d 80 (213)
++-+++..++---+|+.+.+.|....-+ +..+..|...-+...+ .+.. ..+ .....-++..+|
T Consensus 41 lrFiqkk~~~hlvdiwnmieafren~ln~l~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~d 120 (434)
T KOG4301|consen 41 LRFIQKKCNLHLVDIWNMIEAFRENGLNNLDPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAED 120 (434)
T ss_pred CcceeccCCchhHHHHHHHHHHHhccccCCCCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhcC
Confidence 5666777777777777777777663221 1145556655544222 2211 110 123466777889
Q ss_pred CCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcc---cCCCHHHHHHHHHHHH
Q 040252 81 VKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESE---MKLADETIEIILDKTF 157 (213)
Q Consensus 81 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~---~~l~~~~~~~~~~~~f 157 (213)
..+.|.++--....+++.++. +...++++.+|.... |.+|.+..-.+.++++.+++.+- ..-+..-.+..++..|
T Consensus 121 s~~~g~~~vfavkialatlc~-gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~~cf 198 (434)
T KOG4301|consen 121 SEGQGKQQVFAVKIALATLCG-GKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSARLCF 198 (434)
T ss_pred ccCCCCceeecchhhhhhhcc-chHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHHHHH
Confidence 999999888877777888884 888999999999986 66788888888888887754321 1111111123333333
Q ss_pred HhhCCCCCCcccHHHHHHHHhcChh
Q 040252 158 LDADVNQDGKIDKCEWQNFVSKNPS 182 (213)
Q Consensus 158 ~~~d~~~~g~Is~~eF~~~l~~~~~ 182 (213)
.. +.+++.+.|+..+...|.
T Consensus 199 ~q-----qrKv~Ln~fldtl~sdp~ 218 (434)
T KOG4301|consen 199 LQ-----QRKVELNQFLDTLMSDPP 218 (434)
T ss_pred HH-----HHHHHHHHHHHHHhcCCC
Confidence 22 347888999988876653
No 130
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=87.20 E-value=1.1 Score=39.32 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=55.0
Q ss_pred HHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 108 KIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 108 ~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
..+.-|..+|.|+.|+++..++..+++.. +.++++..+++++ ++.+.+-+|.+...||.+++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~----~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSE----NVGWDEDRLHEEL----QEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHHH
Confidence 45567899999999999999999999876 6789988888888 7888888999999999988754
No 131
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=86.76 E-value=0.82 Score=32.68 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=34.3
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHHHHHHHh------hcCCCCCCCcccHHHHHHHHHh-cCc-cchHHHHHHHHHhcCC
Q 040252 13 PGHEDPVLLASQTAFSVSEVEALFELFKM------ISSSVVDDGLISKEEFQLALFK-NRK-KENLFANRIFDLFDVK 82 (213)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~ei~~l~~~F~~------~d~~~~~~G~i~~~ef~~~l~~-~~~-~~~~~~~~l~~~~d~~ 82 (213)
++++++.++++....|...++++.+.|.. +. ..+.|+.+.|+..|.. ... -+..+++.+|..|...
T Consensus 8 lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~----~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 8 LSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYN----PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGE----ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC----CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 44588899999988888888888888863 22 2346666666655432 111 2344566666666543
No 132
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=86.57 E-value=3.4 Score=30.13 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=32.6
Q ss_pred cccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 040252 115 LYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVS 178 (213)
Q Consensus 115 ~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~ 178 (213)
.|-..+...|+...|..+|+.. .-.+..++...++-++ ..+-..+...|+|++|..+|.
T Consensus 10 ~fG~~~~~~m~~~~F~Kl~kD~-~i~d~k~t~tdvDiiF----~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 10 SFGKKNGTEMDSKNFAKLCKDC-GIIDKKLTSTDVDIIF----SKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp CSSTSTSSEEEHHHHHHHHHHT-SS--SSS-HHHHHHHH----HHHT-SS-SEEEHHHHHHHHH
T ss_pred HhcCCccccccHHHHHHHHHHc-CCCCCCCchHHHHHHH----HHhhcCCCcccCHHHHHHHHH
Confidence 3344555677777777777664 2223446666666555 444434445577777777774
No 133
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=83.42 E-value=5.8 Score=32.28 Aligned_cols=102 Identities=13% Similarity=0.278 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhhcCC------------CCCCCcccHHHHHHHHHh------cCccchH-----------HHHHHHHH
Q 040252 28 SVSEVEALFELFKMISSS------------VVDDGLISKEEFQLALFK------NRKKENL-----------FANRIFDL 78 (213)
Q Consensus 28 s~~ei~~l~~~F~~~d~~------------~~~~G~i~~~ef~~~l~~------~~~~~~~-----------~~~~l~~~ 78 (213)
|.++++.+|..-+-+|++ .+++|.++..++...+.. .+..... .-+-+++.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 566777777665544443 248999999998866532 1111111 12567788
Q ss_pred hcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHH
Q 040252 79 FDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 79 ~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~ 136 (213)
+|.|.+..|+.++|+........ .++.+.|.. + +....-+-+|++.+=+.+
T Consensus 305 vDtNqDRlvtleEFL~~t~~kef-~~p~e~WEt----l--~q~~~yTeEEL~~fE~e~ 355 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDTDNKEF-NPPKEEWET----L--GQKKVYTEEELQQFEREY 355 (442)
T ss_pred cccchhhhhhHHHHHhhhhhccc-CCcchhhhh----h--cccccccHHHHHHHHHHH
Confidence 89999999999999986644332 333333332 2 223455667777765443
No 134
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=82.29 E-value=3.4 Score=38.36 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=57.4
Q ss_pred HHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCH-HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChh
Q 040252 107 DKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLAD-ETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPS 182 (213)
Q Consensus 107 ~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~-~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~ 182 (213)
++++..|+-++....|.++.+++...+..+ |....+ ++...-+..+....|.+..|++++.+|...+.+.-.
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl----g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSL----GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhc----CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 567889999999999999999999999887 766654 455555556667778888899999999998865433
No 135
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=80.55 E-value=3.3 Score=29.66 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=38.0
Q ss_pred CCcccHHHHHHHHHhcCccchHHHHHHHHHhcCC-------CCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCC
Q 040252 49 DGLISKEEFQLALFKNRKKENLFANRIFDLFDVK-------RKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDN 120 (213)
Q Consensus 49 ~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~-------~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~ 120 (213)
-+.|+..+|.+.=.-.. -+...++.++..|..+ ..+.|+|+.|..+|........+++..+.+|..|-...
T Consensus 5 ~~~lsp~eF~qLq~y~e-ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE-YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHHHHHH-H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 35677777764421111 1222346666666433 34689999999999887765688888999999886554
No 136
>PLN02952 phosphoinositide phospholipase C
Probab=79.18 E-value=16 Score=32.80 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=54.5
Q ss_pred CCCcccHHHHHHHHHhc---CccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC-ChHHHHHHhcccc-------
Q 040252 48 DDGLISKEEFQLALFKN---RKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNA-PQEDKIDFSFKLY------- 116 (213)
Q Consensus 48 ~~G~i~~~ef~~~l~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~l~~~F~~~------- 116 (213)
+.|.++.++|..+.... ...+...+..+|..+..++ +.++.++|..++....... ...+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 46899999997554322 2224567899999986544 6799999999987766422 2233333333321
Q ss_pred cCCCCCcccHHHHHHHHH
Q 040252 117 DLDNTGFIERQEVKQMLI 134 (213)
Q Consensus 117 D~d~~g~I~~~E~~~~l~ 134 (213)
...+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 112345688999888874
No 137
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=78.61 E-value=15 Score=30.75 Aligned_cols=112 Identities=15% Similarity=0.356 Sum_probs=68.8
Q ss_pred HHHHHHhcCCC-CCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcc-cCCCH-H-H
Q 040252 73 NRIFDLFDVKR-KGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESE-MKLAD-E-T 148 (213)
Q Consensus 73 ~~l~~~~d~~~-~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~-~~l~~-~-~ 148 (213)
+.+|....... +-.++++++........ .+...+..+.++...|.+++|.....++.+++..+++..- ...+. + .
T Consensus 60 q~~f~~vk~~~q~~~~~l~k~~~~~~~~~-~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks~~~~ess~~es~ 138 (427)
T KOG2557|consen 60 QRMFDMVKQRRQDDKMTLEKLVIAKATYE-KGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKSVFSTESSDAESS 138 (427)
T ss_pred ceEeeeccCccCCccchHHHHhhHHhhhc-cCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhhheeeecccchhhh
Confidence 55555554433 34688888887766655 3777888899999999999999999999998887654321 11111 1 1
Q ss_pred HHHHHHHHH---HhhCCCC---CCcccHHHHHHHHhcChhHHH
Q 040252 149 IEIILDKTF---LDADVNQ---DGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 149 ~~~~~~~~f---~~~d~~~---~g~Is~~eF~~~l~~~~~~~~ 185 (213)
........| +.+.++. -+.-.++.|+.+....|-+.+
T Consensus 139 ~~~~~d~af~~~~~~~ke~e~t~p~~~le~~~s~~p~f~~i~r 181 (427)
T KOG2557|consen 139 DYKKMDDAFLNAATFSKEDEGTEPGMSLEDFRSWCPFFPTIRK 181 (427)
T ss_pred hhhhhhccccchhhhccccccCCCchhHHHHhhhchHHHHHHH
Confidence 111111111 1112222 334677888887777666665
No 138
>PLN02230 phosphoinositide phospholipase C 4
Probab=78.54 E-value=8.8 Score=34.41 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=50.2
Q ss_pred ChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhC---CCCCCcccHHHHHHHHhcC
Q 040252 104 PQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDAD---VNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 104 ~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d---~~~~g~Is~~eF~~~l~~~ 180 (213)
.+..++..+|..|..++ +.++.++|..+|...-. .....+.+.++.++..+..... .-..+.++.+.|..+|...
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGG-GEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCC-CcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 35567888999986444 79999999999976510 0113456667777765543332 1234569999999999763
No 139
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=78.52 E-value=5.1 Score=35.49 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=59.5
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccc---hHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 040252 22 ASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKE---NLFANRIFDLFDVKRKGVIDFSDFVRSLSV 98 (213)
Q Consensus 22 ~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~---~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 98 (213)
-..+.+++.-++.+...|..+|.+ +||.++..++..++...+..+ ..+... .-.+..|.+++.-|+..|+.
T Consensus 304 ~~s~ELs~~~~~Fl~~~f~~~D~d--~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 304 DQSVELSPKGYRFLVDVFEKFDRD--NDGALSPEELKDLFSTAPGSPWTSSPYKDS----TVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred CcceeccHHHHHHHHHHHHhccCC--CCCCcCHHHHHHHhhhCCCCCCCCCccccc----ceecccceeehhhHHHHHHH
Confidence 345668999999999999999999 999999999998875433221 011010 01125689999999998865
Q ss_pred hCCCCChHHHHHHhcccccCCC
Q 040252 99 FHPNAPQEDKIDFSFKLYDLDN 120 (213)
Q Consensus 99 ~~~~~~~~~~l~~~F~~~D~d~ 120 (213)
..-.....-.-..+|--|..+.
T Consensus 378 ~Tlld~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 378 MTLLDPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred HhhccHHHHHHHHHhcCCcccc
Confidence 4321222222334555555553
No 140
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=76.70 E-value=2.2 Score=26.63 Aligned_cols=28 Identities=7% Similarity=0.420 Sum_probs=24.4
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHH
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQML 133 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l 133 (213)
..+.+..+|+.+ .++.++||.+||+..+
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 456788999999 7889999999999875
No 141
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=73.15 E-value=15 Score=25.81 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=53.5
Q ss_pred cccHHHHHHHHhhhC------CCCChHHHHHHhcccccCCC--CCcccHHHHHHHHHHHHhhcc---cCC---C----HH
Q 040252 86 VIDFSDFVRSLSVFH------PNAPQEDKIDFSFKLYDLDN--TGFIERQEVKQMLIALLCESE---MKL---A----DE 147 (213)
Q Consensus 86 ~i~~~ef~~~~~~~~------~~~~~~~~l~~~F~~~D~d~--~g~I~~~E~~~~l~~~~~~~~---~~l---~----~~ 147 (213)
.|-|.-|..++.... -+.-+-..+..+|+....+. +..|+..++..++..++.... +.. + +.
T Consensus 14 ~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~ 93 (127)
T PF09068_consen 14 NIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDL 93 (127)
T ss_dssp T-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----H
T ss_pred hHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHH
Confidence 356666666554311 01112233445666554433 467999999999999873221 111 1 24
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 040252 148 TIEIILDKTFLDADVNQDGKIDKCEWQNFVS 178 (213)
Q Consensus 148 ~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~ 178 (213)
-++-+++.++..+|++..|.|+.-.|.-.+.
T Consensus 94 a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 94 AVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 5677788889999999999999888876653
No 142
>PLN02228 Phosphoinositide phospholipase C
Probab=71.52 E-value=15 Score=32.76 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=47.1
Q ss_pred CChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCC----CCCcccHHHHHHHHh
Q 040252 103 APQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVN----QDGKIDKCEWQNFVS 178 (213)
Q Consensus 103 ~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~----~~g~Is~~eF~~~l~ 178 (213)
..+..++..+|..+.. ++.|+.++|..+|...-.. ...+.+.+..++ ..+... ..|.++.+.|..+|.
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~--~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGE--RHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCC--ccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHHhc
Confidence 3466788888888864 3589999999999765110 123445566666 444322 346799999999997
Q ss_pred cC
Q 040252 179 KN 180 (213)
Q Consensus 179 ~~ 180 (213)
..
T Consensus 92 s~ 93 (567)
T PLN02228 92 SD 93 (567)
T ss_pred Cc
Confidence 64
No 143
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=71.04 E-value=1.9 Score=32.64 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=37.2
Q ss_pred HHHhcCC-CCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHH
Q 040252 76 FDLFDVK-RKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLI 134 (213)
Q Consensus 76 ~~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~ 134 (213)
|-.+|.. -+|+++--|+..+-+.+ -+-+.-+...|.-.|.|++|+|+.+|+...+.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 3344543 37788888777654332 34455677788888888888888888776553
No 144
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=70.16 E-value=9.8 Score=37.47 Aligned_cols=73 Identities=19% Similarity=0.389 Sum_probs=49.1
Q ss_pred hcCCCHHHHHHHHHHH------------HhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHH
Q 040252 24 QTAFSVSEVEALFELF------------KMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSD 91 (213)
Q Consensus 24 ~~~~s~~ei~~l~~~F------------~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~e 91 (213)
...-+.+.+..++++| +.+|++ +.|.|+..+|.+++..-.--....++-++.....+.+..++|++
T Consensus 4036 ess~nvemilkffdmflklkdltssdtfkeydpd--gkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~d 4113 (5019)
T KOG2243|consen 4036 ESSNNVEMILKFFDMFLKLKDLTSSDTFKEYDPD--GKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYED 4113 (5019)
T ss_pred HcCccHHHHHHHHHHHHHHhhccccccchhcCCC--CCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHH
Confidence 3333455555555555 346666 99999999999998432222234456777777777788999999
Q ss_pred HHHHHhh
Q 040252 92 FVRSLSV 98 (213)
Q Consensus 92 f~~~~~~ 98 (213)
|+.-++.
T Consensus 4114 fv~rfhe 4120 (5019)
T KOG2243|consen 4114 FVDRFHE 4120 (5019)
T ss_pred HHHHhcC
Confidence 9976543
No 145
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=69.54 E-value=1.9 Score=32.64 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=36.5
Q ss_pred CCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 040252 48 DDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVF 99 (213)
Q Consensus 48 ~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 99 (213)
.+|+++..++. -|....++...-+.++|...|-|++|.|+..|+...+...
T Consensus 201 ~d~~~sh~el~-pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gik 251 (259)
T KOG4004|consen 201 IDGYLSHTELA-PLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK 251 (259)
T ss_pred ccccccccccc-cccCCcccHHhhchhhhhcccCCCCCceeHHHhhcccCcc
Confidence 57888888776 3333333333335899999999999999999998766443
No 146
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=67.64 E-value=26 Score=23.49 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=10.3
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHH
Q 040252 73 NRIFDLFDVKRKGVIDFSDFVRSL 96 (213)
Q Consensus 73 ~~l~~~~d~~~~g~i~~~ef~~~~ 96 (213)
++-|..+.. +|.+....|-.++
T Consensus 33 E~RFd~La~--dG~L~rs~Fg~CI 54 (100)
T PF08414_consen 33 EKRFDKLAK--DGLLPRSDFGECI 54 (100)
T ss_dssp HHHHHHH-B--TTBEEGGGHHHHH
T ss_pred HHHHHHhCc--CCcccHHHHHHhc
Confidence 333444433 4555555555544
No 147
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=66.11 E-value=12 Score=17.42 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=10.2
Q ss_pred cCCCCCcccHHHHHHH
Q 040252 117 DLDNTGFIERQEVKQM 132 (213)
Q Consensus 117 D~d~~g~I~~~E~~~~ 132 (213)
|.|++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677777777766544
No 148
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=65.62 E-value=14 Score=24.69 Aligned_cols=63 Identities=16% Similarity=0.360 Sum_probs=39.6
Q ss_pred cccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHH---HHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 113 FKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILD---KTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 113 F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~---~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
|...|.. ....+.+++..++... +.. ++.+++ ..++..+......++-+|+++++..+|.+++
T Consensus 26 ~~~idi~-~~~~~~~~l~~~~~~~----~~~-----~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 26 YEFIDYL-KEPPTKEELKELLAKL----GLG-----VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred cEEEeec-cCCCCHHHHHHHHHhc----CCC-----HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 4444443 3567788888887654 311 223332 3334554443467899999999999998874
No 149
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=62.40 E-value=8.5 Score=26.55 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 143 KLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 143 ~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
.+++++++.+. .++-.|..|.|.|-||+.-+...
T Consensus 3 iLtDeQFdrLW----~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 3 ILTDEQFDRLW----NEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp ---HHHHHHHH----TTS-B-TTS-EEHHHHHHHT---
T ss_pred cccHHHhhhhh----hhCcCCccCCEeHHHHHHHcccc
Confidence 36788888888 89999999999999999877643
No 150
>PLN02223 phosphoinositide phospholipase C
Probab=62.38 E-value=44 Score=29.66 Aligned_cols=76 Identities=12% Similarity=-0.097 Sum_probs=53.5
Q ss_pred ChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHhhC----CCCCCcccHHHHHHHHh
Q 040252 104 PQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESE-MKLADETIEIILDKTFLDAD----VNQDGKIDKCEWQNFVS 178 (213)
Q Consensus 104 ~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~-~~l~~~~~~~~~~~~f~~~d----~~~~g~Is~~eF~~~l~ 178 (213)
.+.+.++.+|..+. +++|.++.+.+..++.-+...-| ...+.+.++.++..++.... ....+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 45677888999984 77899999999998843311112 35667778888877665442 12235699999999997
Q ss_pred cC
Q 040252 179 KN 180 (213)
Q Consensus 179 ~~ 180 (213)
..
T Consensus 92 s~ 93 (537)
T PLN02223 92 ST 93 (537)
T ss_pred Cc
Confidence 63
No 151
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.91 E-value=5.1 Score=37.52 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 040252 26 AFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 26 ~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 100 (213)
.+++.+...+.++|...|.+ .+|.|+-.+....+...++. ...+..++...|..+.|.+++.+|...+....
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~gl~-~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPFGLS-KPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccCCCC-hhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 67888999999999999998 99999999999887664443 33458999999999999999999988876644
No 152
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=60.76 E-value=28 Score=23.61 Aligned_cols=64 Identities=9% Similarity=0.213 Sum_probs=36.4
Q ss_pred ccccCCCCCcccHHHHHHHHHHHH------hhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCh
Q 040252 114 KLYDLDNTGFIERQEVKQMLIALL------CESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNP 181 (213)
Q Consensus 114 ~~~D~d~~g~I~~~E~~~~l~~~~------~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~ 181 (213)
++||+..+.+|+.+++..++..-- ...|..++...+-.++ .+.+..+...++.+=+.+.++.+-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII----~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQII----AEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHH----HHHHhCCCCCCCHHHHHHHHHHhC
Confidence 467788888888888888775410 0123444444443333 455555666676666655555443
No 153
>PLN02222 phosphoinositide phospholipase C 2
Probab=59.60 E-value=34 Score=30.73 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=48.1
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESE-MKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~-~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
....+..+|..+.. ++.++.++|..+|...- + ...+.+.++.++... ... ...+.++++.|.++|...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q---~~~~~~~~~~~~ii~~~-~~~--~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQ---KQDKATREDAQSIINSA-SSL--LHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhc---CCccCCHHHHHHHHHhh-hhh--hhccCcCHHHHHHHhcCC
Confidence 44588889988863 47999999999997651 2 234667777777442 111 235679999999999763
No 154
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=57.18 E-value=44 Score=22.05 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHH---HhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcc
Q 040252 48 DDGLISKEEFQLAL---FKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFI 124 (213)
Q Consensus 48 ~~G~i~~~ef~~~l---~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I 124 (213)
-||.++..|...+- .....-+......+...+........++.+|...+............+..+|++--. ||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCC
Confidence 47888888766332 221112233446666666665556678888888775544222333445556665543 4667
Q ss_pred cHHHHHHH
Q 040252 125 ERQEVKQM 132 (213)
Q Consensus 125 ~~~E~~~~ 132 (213)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 77665433
No 155
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=56.24 E-value=30 Score=22.76 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=28.2
Q ss_pred CCCcccc-cccCCCCCCCHHHHHhhcCC--CHHHHHHHHHHHHhhcCCCCCCCcccHHHHH
Q 040252 1 MGCFQSK-VAKQFPGHEDPVLLASQTAF--SVSEVEALFELFKMISSSVVDDGLISKEEFQ 58 (213)
Q Consensus 1 Mg~~~s~-~~~~~~~~~~~~~~~~~~~~--s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~ 58 (213)
||++.|+ +-. ..++.+.+..++ +.+++..+....+..+|==..+|.|+.....
T Consensus 1 MG~~~S~~~fv-----~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~ 56 (90)
T PF02337_consen 1 MGQSHSKQPFV-----SILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWK 56 (90)
T ss_dssp --SSS-HHHHH-----HHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHH
T ss_pred CCccchhhHHH-----HHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHH
Confidence 9999888 222 336766666554 4666667777777766521257778887776
No 156
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=55.50 E-value=19 Score=24.31 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=34.5
Q ss_pred CcccHHHHHHHHHHHHhhcccCCCHHHHHHHH---HHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 122 GFIERQEVKQMLIALLCESEMKLADETIEIIL---DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~---~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
-.++.+|+..++... | ++.++ ...++....+....++-++++.++..+|.+++
T Consensus 34 ~p~s~~eL~~~l~~~----g-------~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 34 DGLDAATLERWLAKV----G-------WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred CCCCHHHHHHHHHHh----C-------hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 467888888887654 3 12222 23334444332245889999999999998885
No 157
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=55.20 E-value=36 Score=19.00 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccHHHHHHHHH
Q 040252 31 EVEALFELFKMISSSVVDDGLISKEEFQLALF 62 (213)
Q Consensus 31 ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~ 62 (213)
-+..+...|+++...-+....++..+|...+.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~ 35 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLE 35 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHH
Confidence 35567778888763211467799999998774
No 158
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.71 E-value=21 Score=30.53 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=16.2
Q ss_pred HHHHHhcccccCCCCCcccHHHHHHHHHH
Q 040252 107 DKIDFSFKLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 107 ~~l~~~F~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
+.++.+-+.+|.|.+|.|+.+|--.+++.
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHH
Confidence 44555555556566666666555555543
No 159
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=54.41 E-value=81 Score=22.87 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHHhhCc
Q 040252 142 MKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLKIMTL 189 (213)
Q Consensus 142 ~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~~~ 189 (213)
..++.+++..++..+...+..+ .++-|++.....+.|.+...+-.
T Consensus 126 n~MSk~Qik~L~~~Ii~~akae---~~dtE~Ye~vwkKmPaY~~nil~ 170 (175)
T PF04876_consen 126 NRMSKDQIKTLCEQIIEMAKAE---SSDTEHYEKVWKKMPAYFSNILQ 170 (175)
T ss_pred chhhHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHhhHHHHHHHH
Confidence 3455555555555554444433 24457777788888888875543
No 160
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.78 E-value=13 Score=31.12 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=28.9
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHH
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~ 136 (213)
+.+.++.+|+.+|+.++|+|+.+-+..+++..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 45789999999999999999999999998876
No 161
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=52.75 E-value=7.9 Score=21.21 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=21.3
Q ss_pred ccCCCCCCCHHHHHhhcCCCHHHHHHHHH
Q 040252 9 AKQFPGHEDPVLLASQTAFSVSEVEALFE 37 (213)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~s~~ei~~l~~ 37 (213)
..++++.++...++..+++|..+|...+.
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44677889999999999999999887654
No 162
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.66 E-value=22 Score=26.13 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=12.8
Q ss_pred cccCCCCCcccHHHHHHHHHH
Q 040252 115 LYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 115 ~~D~d~~g~I~~~E~~~~l~~ 135 (213)
+||+.-+.+|+.+++..+++.
T Consensus 20 LYnT~TSTYVTL~dla~mVk~ 40 (193)
T COG5394 20 LYNTGTSTYVTLEDLAQMVKE 40 (193)
T ss_pred hcccCCceeeeHHHHHHHHhc
Confidence 456666666666666666543
No 163
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=52.47 E-value=1.5e+02 Score=27.96 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=78.4
Q ss_pred cCCCHHHHHH-HHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc--chHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCC
Q 040252 25 TAFSVSEVEA-LFELFKMISSSVVDDGLISKEEFQLALFKNRKK--ENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHP 101 (213)
Q Consensus 25 ~~~s~~ei~~-l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~--~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~ 101 (213)
...++.+|.+ +++.+-..|.. ....|+..++...|.+.... ...+...-|... .-..+.++|.+|..+-..++-
T Consensus 135 ~a~~p~qI~~wlrk~~ysvd~~--~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmf 211 (1267)
T KOG1264|consen 135 NAPTPLQIERWLRKQIYSVDQT--RENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMF 211 (1267)
T ss_pred cCCChHHHHHHHHhhheeccch--hhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhh
Confidence 4566777776 56666666644 45668999998777543322 222222223322 234577999999987655442
Q ss_pred CCChHHHHH--H--hcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHH---HHHHHHHHHHHhhCCC-CCCcccHHHH
Q 040252 102 NAPQEDKID--F--SFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADE---TIEIILDKTFLDADVN-QDGKIDKCEW 173 (213)
Q Consensus 102 ~~~~~~~l~--~--~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~---~~~~~~~~~f~~~d~~-~~g~Is~~eF 173 (213)
.......+. . +...=+.-.--.++..||+++|..- ....... .++..+..+....-.+ ....++..||
T Consensus 212 s~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~----Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EF 287 (1267)
T KOG1264|consen 212 SQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHE----QQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEF 287 (1267)
T ss_pred ccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhh----hHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHH
Confidence 111111111 1 1111122223579999999998532 1111111 2333333222222111 2347999999
Q ss_pred HHHHhcC
Q 040252 174 QNFVSKN 180 (213)
Q Consensus 174 ~~~l~~~ 180 (213)
+.++-.-
T Consensus 288 v~fLFSr 294 (1267)
T KOG1264|consen 288 VTFLFSR 294 (1267)
T ss_pred HHHHhhc
Confidence 9998543
No 164
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=51.94 E-value=21 Score=21.18 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=18.3
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHHHH
Q 040252 13 PGHEDPVLLASQTAFSVSEVEALFE 37 (213)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~ei~~l~~ 37 (213)
..+.++..++..+++|.++|+..+.
T Consensus 23 L~E~DL~~L~~kS~ms~qqVr~WFa 47 (56)
T PF11569_consen 23 LQEEDLDELCDKSRMSYQQVRDWFA 47 (56)
T ss_dssp --TTHHHHHHHHTT--HHHHHHHHH
T ss_pred ccHhhHHHHHHHHCCCHHHHHHHHH
Confidence 4568899999999999999988775
No 165
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=51.55 E-value=46 Score=21.95 Aligned_cols=81 Identities=10% Similarity=0.039 Sum_probs=45.4
Q ss_pred CCCcccHHHHHHHHhhhCC-CCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhC
Q 040252 83 RKGVIDFSDFVRSLSVFHP-NAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDAD 161 (213)
Q Consensus 83 ~~g~i~~~ef~~~~~~~~~-~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d 161 (213)
.||.++-.|-..+-..+.. .+...+....++..+........+..++...+.. ..++.....++..++...-
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~r~~~l~~L~~vA~ 84 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE-------HFDYEERLELVEALWEVAY 84 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHH
Confidence 3677777776555433221 1233444455555555545555667776666533 3366666777777776665
Q ss_pred CCCCCcccHHH
Q 040252 162 VNQDGKIDKCE 172 (213)
Q Consensus 162 ~~~~g~Is~~e 172 (213)
.| |.++-.|
T Consensus 85 AD--G~~~~~E 93 (104)
T cd07313 85 AD--GELDEYE 93 (104)
T ss_pred hc--CCCCHHH
Confidence 44 5555444
No 166
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=51.25 E-value=53 Score=22.35 Aligned_cols=62 Identities=26% Similarity=0.432 Sum_probs=38.3
Q ss_pred cccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHH---HHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 113 FKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIIL---DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 113 F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~---~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
|...|.. ....+.+|+..++..+ +.. ++.++ ...++....+. ..++-+|+++++..+|.+++
T Consensus 27 ~~~idi~-~~~~~~~el~~~~~~~----~~~-----~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 27 FEERNLF-KQPLTKEELKEILSLT----ENG-----VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLR 91 (115)
T ss_pred eEEEecC-CCcchHHHHHHHHHHh----cCC-----HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhhee
Confidence 4444432 3567788888888765 322 12222 23334444333 46889999999999999875
No 167
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=49.74 E-value=41 Score=22.83 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=36.5
Q ss_pred CCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHH---HHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 121 TGFIERQEVKQMLIALLCESEMKLADETIEIILDK---TFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 121 ~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~---~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
...+|.+|+..++..+ +.. ++.+++. .++....+. ..++-++++.++..+|.+++
T Consensus 33 ~~~~t~~el~~~l~~~----~~~-----~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~Lik 90 (112)
T cd03034 33 KTPPTAAELRELLAKL----GIS-----PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIE 90 (112)
T ss_pred cCCcCHHHHHHHHHHc----CCC-----HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCccc
Confidence 3578888888888765 322 2233422 234444332 46899999999999999886
No 168
>PRK10026 arsenate reductase; Provisional
Probab=49.21 E-value=32 Score=24.71 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=35.5
Q ss_pred CcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 122 GFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
..+|.+|+..++..+ | +....+=.--...++....+. ..++.++++.++..+|.+++
T Consensus 37 ~ppt~~eL~~~l~~~----g--~~~~~lint~~~~yr~L~~~~-~~ls~~e~l~ll~~~P~LIK 93 (141)
T PRK10026 37 TPPTRDELVKLIADM----G--ISVRALLRKNVEPYEELGLAE-DKFTDDQLIDFMLQHPILIN 93 (141)
T ss_pred CCcCHHHHHHHHHhC----C--CCHHHHHHcCCchHHHcCCCc-cCCCHHHHHHHHHhCcccee
Confidence 467888888888654 3 221111111123345554443 35899999999999999886
No 169
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=48.97 E-value=76 Score=23.02 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhc-ccCCCHHHH
Q 040252 71 FANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCES-EMKLADETI 149 (213)
Q Consensus 71 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~-~~~l~~~~~ 149 (213)
++..+...-+.+.++.|++..|..++...+. +.+..-|- .+.+.++.++++.++..+.... ......++-
T Consensus 84 ~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lG-----dWIT~~~L----kh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Y 154 (175)
T PF04876_consen 84 FLEHLLGGEDDSTNGLIDIGKFFDILQPKLG-----DWITKNFL----KHPNRMSKDQIKTLCEQIIEMAKAESSDTEHY 154 (175)
T ss_pred HHHHHhcCCcCCcccceeHHHHHHHHHHHhh-----hHHHHHHH----hccchhhHHHHHHHHHHHHHHHhccCCchHHH
Confidence 3444444444445788999999998865543 23333332 3567899999999888774332 234445566
Q ss_pred HHHHHHH
Q 040252 150 EIILDKT 156 (213)
Q Consensus 150 ~~~~~~~ 156 (213)
+.++..+
T Consensus 155 e~vwkKm 161 (175)
T PF04876_consen 155 EKVWKKM 161 (175)
T ss_pred HHHHHHh
Confidence 6666443
No 170
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=46.89 E-value=85 Score=22.27 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.9
Q ss_pred CCcccHHHHHHHHhcChhHHHhhC
Q 040252 165 DGKIDKCEWQNFVSKNPSLLKIMT 188 (213)
Q Consensus 165 ~g~Is~~eF~~~l~~~~~~~~~~~ 188 (213)
+|.||..||++.+...+.+.+.+-
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~ 65 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFF 65 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHT
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHc
Confidence 488999999999999998887653
No 171
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.67 E-value=42 Score=23.47 Aligned_cols=44 Identities=30% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCc
Q 040252 119 DNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGK 167 (213)
Q Consensus 119 d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~ 167 (213)
+..|.||.+|-+++|.. ...++.++++.-...+|..-|+...|.
T Consensus 51 ~~~~~iTlqEa~qILnV-----~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILNV-----KEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cccccccHHHHhhHhCC-----CCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 44577999999998842 357888999999999999888887775
No 172
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=45.98 E-value=12 Score=32.30 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHh----cCCCCCcccHHHHHHHHh
Q 040252 32 VEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLF----DVKRKGVIDFSDFVRSLS 97 (213)
Q Consensus 32 i~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~----d~~~~g~i~~~ef~~~~~ 97 (213)
...+...| .+... .++.-+.+||...+..........++.++..- .....+...++.-+++++
T Consensus 288 ~~~i~~ly-~~~~~--~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~a 354 (445)
T PF13608_consen 288 EDEIEHLY-MLCKK--HGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVA 354 (445)
T ss_pred HHHHHHHH-HHHHH--hCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHH
Confidence 33444445 44433 67889999999888654433333334433111 111234566666555543
No 173
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=45.33 E-value=21 Score=21.79 Aligned_cols=22 Identities=23% Similarity=0.634 Sum_probs=19.8
Q ss_pred ccccCCCCCcccHHHHHHHHHH
Q 040252 114 KLYDLDNTGFIERQEVKQMLIA 135 (213)
Q Consensus 114 ~~~D~d~~g~I~~~E~~~~l~~ 135 (213)
++||...+.+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 5799999999999999999864
No 174
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=45.13 E-value=50 Score=22.54 Aligned_cols=55 Identities=11% Similarity=0.243 Sum_probs=35.0
Q ss_pred CcccHHHHHHHHHHHHhhcccCCCHHHHHHHH---HHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 122 GFIERQEVKQMLIALLCESEMKLADETIEIIL---DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~---~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
..++.+|+..++..+ |. +. .+.++ ...++..+.+. ..++-+++..++..+|.+++
T Consensus 34 ~p~t~~el~~~l~~~----g~--~~--~~~lin~~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~Lik 91 (114)
T TIGR00014 34 NPPTKSELEAIFAKL----GL--TV--AREMIRTKEALYKELGLSD-PNLSDQELLDAMVAHPILLE 91 (114)
T ss_pred CCcCHHHHHHHHHHc----CC--ch--HHHHHhcCCcHHHHcCCCc-cCCCHHHHHHHHHHCcCccc
Confidence 578888888888765 32 21 01222 22234443332 36888999999999999886
No 175
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=45.01 E-value=16 Score=22.75 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHH
Q 040252 84 KGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 84 ~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~ 136 (213)
+-.++|...+.++.... +.++...+...|+.=..+.|+.+||...++.+
T Consensus 6 sp~~~F~~L~~~l~~~l----~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHL----PPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34577777666665543 33445555566665578999999999999877
No 176
>PLN02228 Phosphoinositide phospholipase C
Probab=43.85 E-value=1e+02 Score=27.68 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=38.6
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCc---cchHHHHHHHHHhcCC----CCCcccHHHHHH
Q 040252 22 ASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRK---KENLFANRIFDLFDVK----RKGVIDFSDFVR 94 (213)
Q Consensus 22 ~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~---~~~~~~~~l~~~~d~~----~~g~i~~~ef~~ 94 (213)
.......+.+|..++..+. +++.++.++|...|..... .....+..++..+... ..|.++.+.|..
T Consensus 16 ~~~~~~~~~ei~~if~~~s-------~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~ 88 (567)
T PLN02228 16 KEKTREPPVSIKRLFEAYS-------RNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYR 88 (567)
T ss_pred CcCCCCCcHHHHHHHHHhc-------CCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHH
Confidence 3344556666666665443 2356888888777744321 1223456777766543 235577777776
Q ss_pred HH
Q 040252 95 SL 96 (213)
Q Consensus 95 ~~ 96 (213)
++
T Consensus 89 yl 90 (567)
T PLN02228 89 YL 90 (567)
T ss_pred Hh
Confidence 55
No 177
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.69 E-value=1.2e+02 Score=21.81 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=67.7
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhccc
Q 040252 36 FELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKL 115 (213)
Q Consensus 36 ~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~ 115 (213)
+++|..+ ..|+++..++.+.++..+.+ -+..++.- |.+- .-|......+.++......|..
T Consensus 27 rKl~~aL-----stgW~T~~eiee~iG~eg~R-------aL~iLkka--gmlE-----tqWr~p~~G~kPeKeYHtsYt~ 87 (170)
T COG4860 27 RKLLLAL-----STGWITLPEIEEKIGKEGRR-------ALLILKKA--GMLE-----TQWRTPSNGQKPEKEYHTSYTN 87 (170)
T ss_pred HHHHHHH-----hhcceeHHHHHHHhchhhHH-------HHHHHHhh--cchh-----heeeccCCCCCchhhhhhheee
Confidence 4455566 68999999998887554422 22222221 1110 0111222223344444444443
Q ss_pred ccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 116 YDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 116 ~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
... +=..+.+|+.+++... -++++++++..+.+-+.+. ++++.++ +....+..+|.++.
T Consensus 88 Vqi--Nf~~Sl~dL~dii~~~------f~sdeev~ey~~ei~~l~e-~g~ts~~--~vt~~Ln~~p~~ir 146 (170)
T COG4860 88 VQI--NFMGSLSDLADIIYAA------FLSDEEVKEYEDEIKALME-EGNTSFL--DVTDTLNISPTLIR 146 (170)
T ss_pred EEE--EEEEeHHHHHHHHHHH------hCCHHHHHHHHHHHHHHHH-cCCceEe--ehhhhcCCChHHHH
Confidence 332 2367888999988655 6788888888777766665 4444444 66667777776664
No 178
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=43.37 E-value=17 Score=21.91 Aligned_cols=19 Identities=47% Similarity=0.770 Sum_probs=14.5
Q ss_pred CCCcccccccCCCCCCCHHHHHhh
Q 040252 1 MGCFQSKVAKQFPGHEDPVLLASQ 24 (213)
Q Consensus 1 Mg~~~s~~~~~~~~~~~~~~~~~~ 24 (213)
||+.+|++.. ++...+.+.
T Consensus 1 MGC~~SK~d~-----eeaV~~Cke 19 (60)
T PF04783_consen 1 MGCSQSKLDD-----EEAVSLCKE 19 (60)
T ss_pred CCCCcccccC-----cHHHHHHHH
Confidence 9999999987 666655554
No 179
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=42.74 E-value=54 Score=26.09 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHHHHH-hhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 040252 122 GFIERQEVKQMLIALL-CESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQN 175 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~-~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~ 175 (213)
-.+++.++..+|..-+ ...|..++++++.-+.+.+|..-....++.|++..|.+
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 3788899999887543 44689999999999998888666655678899999965
No 180
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=42.56 E-value=58 Score=22.05 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=38.0
Q ss_pred cccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHH---HHHHHhhCCCCC-CcccHHHHHHHHhcChhHHH
Q 040252 113 FKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIIL---DKTFLDADVNQD-GKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 113 F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~---~~~f~~~d~~~~-g~Is~~eF~~~l~~~~~~~~ 185 (213)
|...|... ..++.+|+..++... +... ..++ ...++....+.. ..++-++.++++..+|.+++
T Consensus 26 ~~~idi~~-~~~~~~el~~~~~~~----~~~~-----~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~Lik 92 (111)
T cd03036 26 YTAIDIVE-EPPSKEELKKWLEKS----GLPL-----KKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLIK 92 (111)
T ss_pred eEEecccC-CcccHHHHHHHHHHc----CCCH-----HHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCeee
Confidence 45555443 367788888888654 3221 1222 223344443322 24688999999999998885
No 181
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=41.21 E-value=74 Score=21.73 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=34.3
Q ss_pred HHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 040252 109 IDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILD 154 (213)
Q Consensus 109 l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~ 154 (213)
+.-+|-+++..++...+..+++.++..+ |..+.++.++.++.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sV----G~E~d~e~i~~vis 44 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESV----GAEIDDERINLVLS 44 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh----CcccCHHHHHHHHH
Confidence 3446677778888899999999999888 88999888888873
No 182
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=41.07 E-value=34 Score=23.96 Aligned_cols=91 Identities=22% Similarity=0.264 Sum_probs=47.9
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHH---hcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHH
Q 040252 33 EALFELFKMISSSVVDDGLISKEEFQLALF---KNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKI 109 (213)
Q Consensus 33 ~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~---~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l 109 (213)
..+....-.... -||.++..|...+.. ....-+......+...++.-....+++.+++..+............+
T Consensus 24 ~a~~~ll~~~a~---aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll 100 (140)
T PF05099_consen 24 EALLALLAAVAK---ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLL 100 (140)
T ss_dssp HHHHHHHHHHHH---TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHH
Confidence 334444444444 589999998874432 21222233346666666554445678888887664432212233456
Q ss_pred HHhcccccCCCCCcccHHH
Q 040252 110 DFSFKLYDLDNTGFIERQE 128 (213)
Q Consensus 110 ~~~F~~~D~d~~g~I~~~E 128 (213)
..++.+...|| .++..|
T Consensus 101 ~~l~~ia~ADG--~~~~~E 117 (140)
T PF05099_consen 101 RMLIAIAYADG--EISPEE 117 (140)
T ss_dssp HHHHHHCTCTT--C-SCCH
T ss_pred HHHHHHHhcCC--CCCHHH
Confidence 67777777664 555544
No 183
>PRK12559 transcriptional regulator Spx; Provisional
Probab=40.47 E-value=60 Score=22.85 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=39.0
Q ss_pred cccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 113 FKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 113 F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
|...|.. ...++.+|+..++... +.+ ...+=.--...++..+.+. ..++-++.+.++..+|.+++
T Consensus 27 ~~~~di~-~~~~s~~el~~~l~~~----~~g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~Lik 91 (131)
T PRK12559 27 YTEKNIV-SNSMTVDELKSILRLT----EEG--ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLR 91 (131)
T ss_pred eEEEEee-CCcCCHHHHHHHHHHc----CCC--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 4444433 3468888888888754 222 1111111123345555443 45888999999999999886
No 184
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=39.77 E-value=1e+02 Score=19.78 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=32.4
Q ss_pred hhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcC
Q 040252 23 SQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDV 81 (213)
Q Consensus 23 ~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~ 81 (213)
+..+++.+++..+...|..+-. .+ .+.++-...+.... ...+.++.+..-+..
T Consensus 24 rR~Gfs~~~i~~l~~ayr~l~~----~~-~~~~~a~~~l~~~~-~~~~~v~~~~~Fi~~ 76 (83)
T PF13720_consen 24 RRRGFSKEEISALRRAYRILFR----SG-LTLEEALEELEEEY-PDSPEVREIVDFIRN 76 (83)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHT----SS-S-HHHHHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHh----CC-CCHHHHHHHHHHhc-cCCHHHHHHHHHHHh
Confidence 4567999999999999999863 23 56666555554422 223445666655543
No 185
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=39.48 E-value=15 Score=24.78 Aligned_cols=66 Identities=21% Similarity=0.358 Sum_probs=35.8
Q ss_pred cccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 113 FKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 113 F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
|+..|.- ...++.+|+..++..+ +..+.. -+. --...++..+......++-+|+++++..+|.+++
T Consensus 23 ~~~~d~~-k~p~s~~el~~~l~~~----~~~~~~-lin-~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~Lik 88 (110)
T PF03960_consen 23 YEFIDYK-KEPLSREELRELLSKL----GNGPDD-LIN-TRSKTYKELGKLKKDDLSDEELIELLLENPKLIK 88 (110)
T ss_dssp EEEEETT-TS---HHHHHHHHHHH----TSSGGG-GB--TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-
T ss_pred eEeehhh-hCCCCHHHHHHHHHHh----cccHHH-Hhc-CccchHhhhhhhhhhhhhhHHHHHHHHhChhhee
Confidence 3344433 3458999999999877 422110 000 0011223444222357999999999999998875
No 186
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=38.92 E-value=59 Score=22.93 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=39.0
Q ss_pred cccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 113 FKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 113 F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
|...|.. ...++.+|+..++... +..+ ..+=.--...++..+.+ ...++-+++..++..+|.+++
T Consensus 27 ~~~~d~~-~~~~s~~eL~~~l~~~----~~~~--~~lin~~~~~~k~L~~~-~~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 27 YKEQNLG-KEPLTKEEILAILTKT----ENGI--ESIVSSKNRYAKALDCD-IEELSVNEVIDLIQENPRILK 91 (132)
T ss_pred eEEEECC-CCCCCHHHHHHHHHHh----CCCH--HHhhccCcHHHHhCCcc-hhcCCHHHHHHHHHhCcccee
Confidence 4445543 3478888999988765 3221 11101112333444433 246889999999999999875
No 187
>PF07900 DUF1670: Protein of unknown function (DUF1670); InterPro: IPR012872 The hypothetical eukaryotic proteins found in this family are of unknown function.
Probab=38.04 E-value=71 Score=24.80 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=36.1
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHH
Q 040252 13 PGHEDPVLLASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALF 62 (213)
Q Consensus 13 ~~~~~~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~ 62 (213)
.+.++++......+.+.-...++.+++..... ++|.++..|+..+|+
T Consensus 70 ~~~ED~e~~~~~~~~~elr~~rIvRl~~EAy~---QgglLT~~Dla~LL~ 116 (220)
T PF07900_consen 70 VDPEDIEMRNEKYGLSELRKHRIVRLTNEAYD---QGGLLTQEDLAMLLG 116 (220)
T ss_pred cCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH---cCCcccHHHHHHHHC
Confidence 45577777776666666666788888888765 799999999996663
No 188
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=36.53 E-value=98 Score=21.70 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=34.1
Q ss_pred CcccHHHHHHHHHHHHhhcccCCCHHHHHHHH---HHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 122 GFIERQEVKQMLIALLCESEMKLADETIEIIL---DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~---~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
...+.+|+..++..+ +.+ +++++ ...++....+. ..++-+|++.++..+|.+++
T Consensus 35 ~~~~~~eL~~~l~~~----~~g-----~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~p~Lik 91 (131)
T PRK01655 35 SPLTIDEIKQILRMT----EDG-----TDEIISTRSKVFQKLNVDV-ESLSLQDLIKLISDNPGLLR 91 (131)
T ss_pred ChhhHHHHHHHHHHh----cCC-----HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 456677777777654 222 12222 23345554333 36889999999999999875
No 189
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.49 E-value=1.6e+02 Score=21.20 Aligned_cols=62 Identities=15% Similarity=0.315 Sum_probs=38.0
Q ss_pred HhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 040252 111 FSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKN 180 (213)
Q Consensus 111 ~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~ 180 (213)
.+|++++.| |.++..|...+..-+ + ....+++.+++.++... +.+ +.-.+++-.|...++++
T Consensus 34 Llf~Vm~AD--G~v~~~E~~a~r~il-~-~~f~i~~~~l~ali~~~-e~~---~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 34 LLFHVMEAD--GTVSESEREAFRAIL-K-ENFGIDGEELDALIEAG-EEA---GYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHhcc--cCcCHHHHHHHHHHH-H-HHcCCCHHHHHHHHHHH-HHh---hHHHHHHHHHHHHHHHh
Confidence 677777664 567777766553322 2 24678888888887322 222 23467777787777644
No 190
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=35.15 E-value=78 Score=18.17 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhcccCCCH---HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChh
Q 040252 127 QEVKQMLIALLCESEMKLAD---ETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPS 182 (213)
Q Consensus 127 ~E~~~~l~~~~~~~~~~l~~---~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~ 182 (213)
.+|..+...+....|..+++ ..++.-+...+... |.=++.+|..++...|+
T Consensus 3 ~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~-----~~~~~~~y~~~L~~d~~ 56 (57)
T PF03705_consen 3 AEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRAL-----GLPSFAEYYELLRSDPD 56 (57)
T ss_dssp HHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH-----T---HHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCC
Confidence 34444444444444666654 33444443333333 46689999999887764
No 191
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=33.75 E-value=1.1e+02 Score=21.15 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=30.8
Q ss_pred HHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 040252 110 DFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIIL 153 (213)
Q Consensus 110 ~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~ 153 (213)
..+|-+....|+..+|.+++..++.+. |..+.+..+..++
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~Aa----GveVd~~~~~l~~ 45 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAV----NADVEDDVLDNFF 45 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHH
Confidence 345556666777789999999999887 8888877776666
No 192
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=33.67 E-value=1.1e+02 Score=21.24 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=41.4
Q ss_pred CCCcccHHHHHHHHhhhC-CCCChHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhC
Q 040252 83 RKGVIDFSDFVRSLSVFH-PNAPQEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDAD 161 (213)
Q Consensus 83 ~~g~i~~~ef~~~~~~~~-~~~~~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d 161 (213)
.||.|+-+|-..+...+. ...........+...++.-.....+..++. ..+ ...++..+...++..++....
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~l----~~~~~~~~r~~ll~~l~~ia~ 108 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELL---REL----RDSLSPEEREDLLRMLIAIAY 108 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHH---HHH----CTS--HHHHHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHH---HHH----HHhhchHHHHHHHHHHHHHHh
Confidence 467777777665544331 112122333344444443323344444443 333 556667777888888887777
Q ss_pred CCCCCcccHHHHHH
Q 040252 162 VNQDGKIDKCEWQN 175 (213)
Q Consensus 162 ~~~~g~Is~~eF~~ 175 (213)
.||.-.-.-.++++
T Consensus 109 ADG~~~~~E~~~l~ 122 (140)
T PF05099_consen 109 ADGEISPEEQEFLR 122 (140)
T ss_dssp CTTC-SCCHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 66544433444444
No 193
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=33.64 E-value=1.2e+02 Score=18.76 Aligned_cols=23 Identities=4% Similarity=0.231 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhcccCCCHHHHHHHH
Q 040252 127 QEVKQMLIALLCESEMKLADETIEIIL 153 (213)
Q Consensus 127 ~E~~~~l~~~~~~~~~~l~~~~~~~~~ 153 (213)
+++..++... +..+++.++..++
T Consensus 17 ~~m~~if~l~----~~~vs~~el~a~l 39 (68)
T PF07308_consen 17 DDMIEIFALA----GFEVSKAELSAWL 39 (68)
T ss_pred HHHHHHHHHc----CCccCHHHHHHHH
Confidence 3455555443 6666766666655
No 194
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=33.02 E-value=1.4e+02 Score=19.42 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=23.2
Q ss_pred CcccHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 040252 122 GFIERQEVKQMLIALLCESEMKLADETIEIIL 153 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~ 153 (213)
..||.+||..+.+.. +..+++.+++.++
T Consensus 13 n~iT~~eLlkyskqy----~i~it~~QA~~I~ 40 (85)
T PF11116_consen 13 NNITAKELLKYSKQY----NISITKKQAEQIA 40 (85)
T ss_pred hcCCHHHHHHHHHHh----CCCCCHHHHHHHH
Confidence 468888999888766 8888888888887
No 195
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=33.00 E-value=2e+02 Score=21.13 Aligned_cols=123 Identities=12% Similarity=0.230 Sum_probs=76.6
Q ss_pred HHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcc
Q 040252 35 LFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFK 114 (213)
Q Consensus 35 l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~ 114 (213)
.+++|..+ .+|++|..++...++... .+-+..+.+ .|.| -.+| ........++.+.+..|.
T Consensus 19 ~kkV~~~L-----s~~W~T~~El~e~~G~d~-------~~~L~~LkK--~gLi-E~qW----rmP~pG~kPeKEYhtsYs 79 (160)
T PF09824_consen 19 YKKVYDEL-----SKGWMTEEELEEKYGKDV-------RESLLILKK--GGLI-ESQW----RMPEPGEKPEKEYHTSYS 79 (160)
T ss_pred HHHHHHHH-----HhccCCHHHHHHHHCcCH-------HHHHHHHHH--cCch-hhcc----ccCCCCCCchHHHHhhHh
Confidence 34556666 679999999998874433 111222211 1111 1111 112222345666666666
Q ss_pred cccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHHhh
Q 040252 115 LYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLKIM 187 (213)
Q Consensus 115 ~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~ 187 (213)
.+-.| =+.+.+|+.+++... -.+++++.++...+-+.+.. |..+..+..+-+..+|-+++-+
T Consensus 80 ~vqaN--Fqcs~~DLsdii~i~------f~~deel~~~~e~i~~~v~~---Gn~Sl~~lsr~l~~sp~firgl 141 (160)
T PF09824_consen 80 KVQAN--FQCSMEDLSDIIYIA------FMSDEELRDYVEKIEKEVEA---GNTSLSDLSRKLGISPVFIRGL 141 (160)
T ss_pred heeee--eEeeHHHHHHHHhee------ecCHHHHHHHHHHHHHHHHc---CCCcHHHHHHHhCCCHHHHHHH
Confidence 66543 367788888887543 56677888888777777653 7889999999999999888744
No 196
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=32.65 E-value=54 Score=21.36 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhC--CCCCCcccHHHHH
Q 040252 124 IERQEVKQMLIALLCESEMKLADETIEIILDKTFLDAD--VNQDGKIDKCEWQ 174 (213)
Q Consensus 124 I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d--~~~~g~Is~~eF~ 174 (213)
++..||.+.+..- ...++..+++.+++.++..+- ...++.|.+.+|-
T Consensus 1 m~k~eli~~i~~~----~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gfG 49 (94)
T TIGR00988 1 MTKSELIERIATQ----QSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFG 49 (94)
T ss_pred CCHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCcE
Confidence 3566776666432 345677777777766655441 1233445554443
No 197
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=32.59 E-value=1.2e+02 Score=18.42 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHH
Q 040252 34 ALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRS 95 (213)
Q Consensus 34 ~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 95 (213)
.+..+...... .+|.++..++...+ .+.+..++...=|.-++.+|+..
T Consensus 9 ~l~~ll~~~~~---~~g~v~ls~l~~~~-----------~~~~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 9 LLRELLESQKG---EDGWVSLSQLGQEY-----------KKKYPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp HHHHHHHHTCT---TTSSEEHHHHHHHH-----------HHHHTT--TCCTTSSSHHHHHHT
T ss_pred HHHHHHHhCcC---CCceEEHHHHHHHH-----------HHHCCCCCccccCCCcHHHHHHh
Confidence 34455533321 36789999888776 44446677777788888888864
No 198
>PLN02222 phosphoinositide phospholipase C 2
Probab=30.66 E-value=1.3e+02 Score=27.10 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=43.9
Q ss_pred HhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCcc---chHHHHHHHHHhcC-CCCCcccHHHHHHHHh
Q 040252 22 ASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKK---ENLFANRIFDLFDV-KRKGVIDFSDFVRSLS 97 (213)
Q Consensus 22 ~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~---~~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~ 97 (213)
.......+.+|..++..|. +++.++..+|...|...... ....++.++..+.. ...+.++++.|..++.
T Consensus 17 ~~~~~~~~~ei~~if~~~~-------~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 17 RYTASEAPREIKTIFEKYS-------ENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred ccccCCCcHHHHHHHHHhc-------CCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 3445566777766666543 24689999998888543321 23446777776533 2356689999988873
No 199
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=29.93 E-value=1.6e+02 Score=21.24 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCcccHHHHHHHHHHHHhhccc-CCCHHHHHHHHHHHHHhhCCCCC-CcccHHHHHHHHhcChh
Q 040252 121 TGFIERQEVKQMLIALLCESEM-KLADETIEIILDKTFLDADVNQD-GKIDKCEWQNFVSKNPS 182 (213)
Q Consensus 121 ~g~I~~~E~~~~l~~~~~~~~~-~l~~~~~~~~~~~~f~~~d~~~~-g~Is~~eF~~~l~~~~~ 182 (213)
+|.++.+|...++..+-..... ......+...+..+...++.+.. |.+.-.+....+..+++
T Consensus 38 dg~~~~~e~~~~~~~~~s~~~L~~f~~~~i~~~~~~~~~~~~~d~~~gk~ea~~~I~~lk~d~e 101 (144)
T COG3793 38 DGEVDSEEKQKMVQFLRSSAALSVFDSNEINEIFETLVGSFDTDFEIGKREAMKEIEDLKHDTE 101 (144)
T ss_pred ccccChHHHHHHHHHHHcChhhhhccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCChH
Confidence 3556666666655544211111 11122344444444455555555 56666666666666654
No 200
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=29.50 E-value=78 Score=20.16 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=15.8
Q ss_pred CCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 040252 120 NTGFIERQEVKQMLIALLCESEMKLADETIEIILD 154 (213)
Q Consensus 120 ~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~ 154 (213)
..|+||.+|+..+|. ...+++..++.++.
T Consensus 18 ~~G~lT~~eI~~~L~------~~~~~~e~id~i~~ 46 (82)
T PF03979_consen 18 KKGYLTYDEINDALP------EDDLDPEQIDEIYD 46 (82)
T ss_dssp HHSS-BHHHHHHH-S-------S---HHHHHHHHH
T ss_pred hcCcCCHHHHHHHcC------ccCCCHHHHHHHHH
Confidence 357788888887763 23566677777663
No 201
>PF11907 DUF3427: Domain of unknown function (DUF3427); InterPro: IPR021835 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 243 to 275 amino acids in length. This domain is found associated with PF04851 from PFAM, PF00271 from PFAM.
Probab=29.25 E-value=2.7e+02 Score=22.29 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=39.6
Q ss_pred CCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCC---------CcccHHHHHHHHhcChhHHH
Q 040252 120 NTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQD---------GKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 120 ~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~---------g~Is~~eF~~~l~~~~~~~~ 185 (213)
..+.|+.+++...+... +...++..++.+++.+...+-.... ..--.++|..++...|.+..
T Consensus 24 ~~~~is~~~~~~~l~~~----~~~~~~~~~~s~~~~L~~~f~~~~~kk~~li~~~~~~l~~~~~~~l~~~~~f~~ 94 (274)
T PF11907_consen 24 KNSSISIEDFREILKEN----HIDIDEETLKSALRMLSLSFFKKADKKYPLIEISFYSLSEEFSKLLRNNPSFKK 94 (274)
T ss_pred hcCCcCHHHHHHHHHHc----CccccHHHHHHHHHHHHhhcccccccccceEEecccchHHHHHHHHhCcHHHHH
Confidence 45678888888887654 5566666666666655555544444 33445678888877756554
No 202
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=29.18 E-value=67 Score=16.56 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=13.3
Q ss_pred CCCcccHHHHHHHHHHH
Q 040252 120 NTGFIERQEVKQMLIAL 136 (213)
Q Consensus 120 ~~g~I~~~E~~~~l~~~ 136 (213)
+.|.|+.+|+.++...+
T Consensus 1 ~~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRV 17 (33)
T ss_pred CCceecHHHHHHHHHHH
Confidence 36788999988887665
No 203
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=29.04 E-value=1.1e+02 Score=20.95 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=33.2
Q ss_pred CcccHHHHHHHHHHHHhhcccCCCHHHHHHHH---HHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 122 GFIERQEVKQMLIALLCESEMKLADETIEIIL---DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~---~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
..++.+|+..++..+ |. +.++ ...++..+.+. ..++-++.+.++..+|.+++
T Consensus 35 ~p~s~~eL~~~l~~~----g~-------~~l~n~~~~~~r~~~~~~-~~ls~~e~~~ll~~~P~Lik 89 (113)
T cd03033 35 EPWTAETLRPFFGDL----PV-------AEWFNPAAPRVKSGEVVP-EALDEEEALALMIADPLLIR 89 (113)
T ss_pred CCCCHHHHHHHHHHc----CH-------HHHHhcccHHHHhcCCCc-cCCCHHHHHHHHHhCcceee
Confidence 467788888887644 21 1222 23334433222 46789999999999999886
No 204
>PF04523 Herpes_U30: Herpes virus tegument protein U30; InterPro: IPR007611 This family is named after the human herpesvirus protein, but has been characterised in cytomegalovirus as UL47. Cytomegalovirus UL47 is a component of the tegument, which is a protein layer surrounding the viral capsid. UL47 co-precipitates with UL48 and UL69 tegument proteins, and the major capsid protein UL86. A UL47-containing complex is thought to be involved in the release of viral DNA from the disassembling virus particle [].; GO: 0019068 virion assembly
Probab=28.75 E-value=1.9e+02 Score=27.71 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=50.3
Q ss_pred CCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHH--hhCcCcccccccc
Q 040252 121 TGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK--IMTLPYLRDITTS 198 (213)
Q Consensus 121 ~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~--~~~~~~~~~~~~~ 198 (213)
.-.++..++.++...+. .-+++++-+......+...-....+..-.+++|...+....-... +.++ ..
T Consensus 327 ~~~~~l~~i~~~~~~L~---~~GLn~~~c~~y~~ml~~~~~~~~~~~~~~~e~~~~l~~Li~~a~~Ff~CL-------~~ 396 (887)
T PF04523_consen 327 KKSLSLSDIEEIKRRLL---SLGLNEETCRTYAQMLLTQPSGTAPRWENLSEFAQLLSQLIYFAHYFFLCL-------EQ 396 (887)
T ss_pred cccccHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHH-------Hh
Confidence 46777888777766653 457777777666533332222344556778888887766432222 2233 34
Q ss_pred C-Ccccccchhhhh
Q 040252 199 F-PSFIFNSEVDEI 211 (213)
Q Consensus 199 ~-~~~~~~~~~~~~ 211 (213)
| |-||||+++++|
T Consensus 397 ySPTsif~~~~r~i 410 (887)
T PF04523_consen 397 YSPTSIFHHRIRLI 410 (887)
T ss_pred cCchHHHHHHHHHH
Confidence 5 999999999965
No 205
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=28.62 E-value=1.4e+02 Score=20.36 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=29.8
Q ss_pred HhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 040252 111 FSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIIL 153 (213)
Q Consensus 111 ~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~ 153 (213)
.+|-+....|+..+|.+++..++++. |..+.+..+..++
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~Aa----GveVe~~~~~lf~ 43 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSV----GVEVDDEKLNKVI 43 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHc----CCCccHHHHHHHH
Confidence 45556666777799999999999887 8887777666665
No 206
>PLN02230 phosphoinositide phospholipase C 4
Probab=28.15 E-value=1.5e+02 Score=26.90 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=6.9
Q ss_pred CcccHHHHHHHHH
Q 040252 50 GLISKEEFQLALF 62 (213)
Q Consensus 50 G~i~~~ef~~~l~ 62 (213)
+.++.++|.+.|.
T Consensus 43 ~~mt~~~l~~FL~ 55 (598)
T PLN02230 43 AHMSPEQLQKLMA 55 (598)
T ss_pred CccCHHHHHHHHH
Confidence 4555555555553
No 207
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=27.44 E-value=57 Score=18.64 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHhhcCCCHHHHHHHHHH
Q 040252 11 QFPGHEDPVLLASQTAFSVSEVEALFEL 38 (213)
Q Consensus 11 ~~~~~~~~~~~~~~~~~s~~ei~~l~~~ 38 (213)
++++.+++..+...++++..+|...+..
T Consensus 23 ~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 23 PYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3566688888999999998888877643
No 208
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=27.43 E-value=1.7e+02 Score=20.14 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=35.6
Q ss_pred CcccHHHHHHHHHHHHhhcccCCCHHHHHHHH---HHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 122 GFIERQEVKQMLIALLCESEMKLADETIEIIL---DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~---~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
..++.+||..++... |.. ++.++ ...++..+ -....++-++....+..+|.+++
T Consensus 36 ~~~s~~eL~~~l~~~----g~~-----~~~li~t~~~~~r~L~-~~~~~~~~~~~~~~i~~~~~Lik 92 (117)
T COG1393 36 TPPSREELKKILSKL----GDG-----VEELINTRGTTYRELN-LDKEDLSDEELIEALLENPSLIK 92 (117)
T ss_pred CCCCHHHHHHHHHHc----Ccc-----HHHHHHhccchHHHcC-CcccccChHHHHHHHHhChhhcc
Confidence 468889999988765 433 22333 23345555 23347888999999999886665
No 209
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.19 E-value=3.9e+02 Score=25.71 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCC---------ChHHHHHHhcccccCCC----
Q 040252 54 KEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNA---------PQEDKIDFSFKLYDLDN---- 120 (213)
Q Consensus 54 ~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~---------~~~~~l~~~F~~~D~d~---- 120 (213)
.+.|..++... .+.+.+++||..+..+...+++.+++..++-...++. -....+..+.+.|..++
T Consensus 207 ~e~f~~~l~kl--cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 207 LEKFYRLLNKL--CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 33344444332 3445679999999888878999999999886544211 23456777888887765
Q ss_pred CCcccHHHHHHHHH
Q 040252 121 TGFIERQEVKQMLI 134 (213)
Q Consensus 121 ~g~I~~~E~~~~l~ 134 (213)
+|.|+.+-|..++.
T Consensus 285 ~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYLM 298 (1189)
T ss_pred ccccchhhhHHHhh
Confidence 68999999988874
No 210
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=27.06 E-value=1.8e+02 Score=18.89 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=34.1
Q ss_pred CCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 040252 120 NTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSK 179 (213)
Q Consensus 120 ~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~ 179 (213)
.+..|...+|+..+... ..--+..+...+- ..+|...++.||.-||--..+-
T Consensus 19 ~r~IVPW~~F~~~L~~~----h~~~~~~~~~aLk----~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 19 KRTIVPWSEFRQALQKV----HPISSGLEAMALK----STIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp T-SEEEHHHHHHHHHHH----S--SSHHHHHHHH----HHH-TTSSSEEEHHHHHHHHHH
T ss_pred CCeEeeHHHHHHHHHHh----cCCCchHHHHHHH----HHHhcccCCccchhhhHHHHHH
Confidence 44679999999999876 2222223333333 5778889999999988766654
No 211
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=26.26 E-value=3e+02 Score=21.80 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=34.9
Q ss_pred hhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhcCccchHHHHHHHHHhcCCCCC
Q 040252 23 SQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLALFKNRKKENLFANRIFDLFDVKRKG 85 (213)
Q Consensus 23 ~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~l~~~~d~~~~g 85 (213)
+...|+++++..+++.|+.+- ..| ++.++-.+.+... ....+.++.+..-+...+.|
T Consensus 196 ~r~g~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~s~rg 252 (255)
T PRK12461 196 RRRGFSSRAIRALKRAYKIIY----RSG-LSVQQAVAELELQ-QFESPEVEELIDFIKASKRG 252 (255)
T ss_pred hhcCCCHHHHHHHHHHHHHHH----hcC-CCHHHHHHHHHHh-ccCCHHHHHHHHHHHccCCC
Confidence 556799999999999999885 334 5655544444332 12334456666655443333
No 212
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=26.00 E-value=1e+02 Score=18.48 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=19.3
Q ss_pred CChHHHHHHhcccc--cCCCCCcccHHHHHHHHHHH
Q 040252 103 APQEDKIDFSFKLY--DLDNTGFIERQEVKQMLIAL 136 (213)
Q Consensus 103 ~~~~~~l~~~F~~~--D~d~~g~I~~~E~~~~l~~~ 136 (213)
..+-+++....+.+ +. +...++.+|++.++..+
T Consensus 11 sl~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 35556677777777 33 44577778888887665
No 213
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=25.13 E-value=2.4e+02 Score=19.55 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhhC
Q 040252 70 LFANRIFDLFDVKRKGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 70 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 100 (213)
++...+-..++...++.+..+.|...+....
T Consensus 64 Pl~~~I~~~L~~~~~~~~~~~~~~~~L~~~~ 94 (120)
T PF09821_consen 64 PLAAHIRRVLRERPNHRLPEERFLDELEDHF 94 (120)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC
Confidence 3445566666666777788888887775544
No 214
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=25.05 E-value=2.4e+02 Score=19.58 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=50.3
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhCCCCCC-cccHHHHHHHHhcChhH
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDADVNQDG-KIDKCEWQNFVSKNPSL 183 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d~~~~g-~Is~~eF~~~l~~~~~~ 183 (213)
...++.+.|..+...+.++|+..-+..++.-+ ..+..++.+.+..+++++...-..+-+- -+-++....+.....++
T Consensus 19 vq~ka~Q~f~~~s~~~k~fI~~~vliE~V~vL--~~~y~~~rE~i~~VIetll~~~~f~V~~~d~i~~A~~~Y~k~kadF 96 (130)
T COG5611 19 VQTKAEQFFEELSQKGKLFIPEEVLIELVYVL--EHGYKWEREDIYEVIETLLNDELFNVELKDFIREAIKLYSKRKADF 96 (130)
T ss_pred HHHHHHHHHHhcCcCCCccchHHHHHHHHHHH--HhcchhhHHHHHHHHHHHhccccceecchHHHHHHHHHHHhccccH
Confidence 34467888999999999999988777776544 2367888888888887666443332111 13333344455555555
Q ss_pred HH
Q 040252 184 LK 185 (213)
Q Consensus 184 ~~ 185 (213)
.+
T Consensus 97 ~D 98 (130)
T COG5611 97 LD 98 (130)
T ss_pred HH
Confidence 44
No 215
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=24.73 E-value=23 Score=18.05 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=12.8
Q ss_pred HHHhhCCCCCCcccHHH
Q 040252 156 TFLDADVNQDGKIDKCE 172 (213)
Q Consensus 156 ~f~~~d~~~~g~Is~~e 172 (213)
+...-|.|++.+|+.++
T Consensus 4 LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIED 20 (30)
T ss_pred HhhccccCCCcEEEEec
Confidence 33778889998888664
No 216
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=24.61 E-value=1.5e+02 Score=20.68 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHHHhhcccCCCHHHHHHHH---HHHHHhhCCCCCCcccHHHHHHHHhcChhHHH
Q 040252 122 GFIERQEVKQMLIALLCESEMKLADETIEIIL---DKTFLDADVNQDGKIDKCEWQNFVSKNPSLLK 185 (213)
Q Consensus 122 g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~---~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~ 185 (213)
-.++.+|+..++..+ | ++.++ ...++..+.+. ..++-++.+.+|..+|.+++
T Consensus 36 ~p~t~~eL~~~l~~~----g-------~~~lin~~~~~~r~l~~~~-~~ls~~e~i~lm~~~P~LIK 90 (126)
T TIGR01616 36 EPWHADTLRPYFGNK----P-------VGSWFNRAAPRVKSGEVNP-DSIDEASALALMVSDPLLIR 90 (126)
T ss_pred CCcCHHHHHHHHHHc----C-------HHHHHhccchHhhhCCCCc-ccCCHHHHHHHHHhCcCeEe
Confidence 467777777777643 2 11222 22334444332 46889999999999999886
No 217
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=24.24 E-value=2.3e+02 Score=21.82 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=12.3
Q ss_pred CCCcccHHHHHHHHhhhC
Q 040252 83 RKGVIDFSDFVRSLSVFH 100 (213)
Q Consensus 83 ~~g~i~~~ef~~~~~~~~ 100 (213)
..|.|+-.+|..++..+.
T Consensus 38 k~G~Id~~e~kkav~~li 55 (215)
T PF09873_consen 38 KPGKIDVEEFKKAVYSLI 55 (215)
T ss_pred CCCcccHHHHHHHHHHHH
Confidence 467777777777775543
No 218
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=23.85 E-value=2.7e+02 Score=19.70 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=38.7
Q ss_pred cccccCCCCCcccHHHHHHHHHHHH-hh------cc-----cCCCHHHHHHHHHHH-HHhhCCCCCC-cccHHHHHHHHh
Q 040252 113 FKLYDLDNTGFIERQEVKQMLIALL-CE------SE-----MKLADETIEIILDKT-FLDADVNQDG-KIDKCEWQNFVS 178 (213)
Q Consensus 113 F~~~D~d~~g~I~~~E~~~~l~~~~-~~------~~-----~~l~~~~~~~~~~~~-f~~~d~~~~g-~Is~~eF~~~l~ 178 (213)
+|-.+..|.+.|...||+.++..+- .. .| ...+...+...+... ...++.+-+- ..|.+||...+.
T Consensus 8 LRGINVGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~~el~~i~~ 87 (137)
T PF08002_consen 8 LRGINVGGKNKIKMAELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKIEKALEERFGFDVPVIVRSAEELRAIIA 87 (137)
T ss_dssp ESS-SBTTBS---HHHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHHHHHHHHH-TT---EEEEEHHHHHHHHT
T ss_pred EcceecCCCCcccHHHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEeeHHHHHHHHH
Confidence 4556677888999999999998761 00 01 244555555444433 3445544332 489999999999
Q ss_pred cChhH
Q 040252 179 KNPSL 183 (213)
Q Consensus 179 ~~~~~ 183 (213)
.+|-.
T Consensus 88 ~nPf~ 92 (137)
T PF08002_consen 88 ANPFP 92 (137)
T ss_dssp T--GG
T ss_pred HCCCc
Confidence 99955
No 219
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=23.57 E-value=2.2e+02 Score=25.01 Aligned_cols=127 Identities=18% Similarity=0.233 Sum_probs=74.8
Q ss_pred ccHHHHHHHHHh----cCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCCcccHH
Q 040252 52 ISKEEFQLALFK----NRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTGFIERQ 127 (213)
Q Consensus 52 i~~~ef~~~l~~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g~I~~~ 127 (213)
.+..+|.=.|.. .+......+..+|+..|.++=-.+|..++..++.....+ ...+. ..-|.|+..
T Consensus 106 aTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~---~~e~~--------~~yG~is~a 174 (502)
T PF05872_consen 106 ATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSEN---AKELS--------AEYGNISSA 174 (502)
T ss_pred eeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhh---HHHHH--------HHcCCccHH
Confidence 566666544322 222233446889999998877789999999988666421 11111 123788888
Q ss_pred HHHHHHHHHHhhc--c----cCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHhcChhHHHhhCcCccccc
Q 040252 128 EVKQMLIALLCES--E----MKLADETIEIILDKTFLDADVNQDGKIDKCEWQNFVSKNPSLLKIMTLPYLRDI 195 (213)
Q Consensus 128 E~~~~l~~~~~~~--~----~~l~~~~~~~~~~~~f~~~d~~~~g~Is~~eF~~~l~~~~~~~~~~~~~~~~~~ 195 (213)
-+-.+++.++... | ..-+.-++++++ ..|.++.|.|+.=+.-+.+. .|.+..-|-+-..+++
T Consensus 175 S~gaI~R~ll~LE~qG~d~FFGEPaldi~Dl~-----r~~~~GrG~IniL~a~~l~~-~P~LysTFLLwLLsEL 242 (502)
T PF05872_consen 175 SIGAIQRALLVLEQQGGDQFFGEPALDIEDLM-----RTDADGRGVINILAADKLMN-SPKLYSTFLLWLLSEL 242 (502)
T ss_pred HHHHHHHHHHHHHHcchHhhCCCccCCHHHHh-----ccCCCCCEEEEEEEhHhhhh-CcHHHHHHHHHHHHHH
Confidence 8888888774321 1 122233455665 66778889888666655554 5666654333333333
No 220
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=23.43 E-value=3.8e+02 Score=23.02 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=54.5
Q ss_pred CCcccHHHHHHHHHhcC-ccchHHHHHHHHHhcCCCCCcccHHHHHHHHhhhCCCCChHHHHHHhcccccCCCCC---cc
Q 040252 49 DGLISKEEFQLALFKNR-KKENLFANRIFDLFDVKRKGVIDFSDFVRSLSVFHPNAPQEDKIDFSFKLYDLDNTG---FI 124 (213)
Q Consensus 49 ~G~i~~~ef~~~l~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~F~~~D~d~~g---~I 124 (213)
...|..+.|..+|...- ..+-.++-.+-..+|-..++.|+--||-.+...+. +...+..-++.+..-+-| .+
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFq----Pw~tllkNWq~LavtHPGYmAFL 263 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQ----PWKTLLKNWQTLAVTHPGYMAFL 263 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhc----cHHHHHHhhhhhhccCCceeEEe
Confidence 44577788887775422 22333445555566776777777666655433321 222344456667777777 57
Q ss_pred cHHHHHHHHHHHHhhcc
Q 040252 125 ERQEVKQMLIALLCESE 141 (213)
Q Consensus 125 ~~~E~~~~l~~~~~~~~ 141 (213)
+.+|++.-+++..+.+|
T Consensus 264 TYDEVk~RLqk~~~KpG 280 (563)
T KOG1785|consen 264 TYDEVKARLQKYIKKPG 280 (563)
T ss_pred eHHHHHHHHHHHhcCCC
Confidence 88999999988755544
No 221
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.39 E-value=2.4e+02 Score=18.99 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=36.8
Q ss_pred hcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhhC
Q 040252 112 SFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLDAD 161 (213)
Q Consensus 112 ~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~d 161 (213)
+-+.....++|.--+++-...+...+...|..+++++++.+++.....+.
T Consensus 56 veq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m~ 105 (108)
T PF09682_consen 56 VEQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEMN 105 (108)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Confidence 34445555578888887777777666666889999999999977766653
No 222
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.34 E-value=49 Score=30.03 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhh
Q 040252 72 ANRIFDLFDVKRKGVIDFSDFVRSLSV 98 (213)
Q Consensus 72 ~~~l~~~~d~~~~g~i~~~ef~~~~~~ 98 (213)
..+++..+|.+-++.++|.+|......
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~ 465 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFA 465 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHH
Confidence 456677777777777777777665433
No 223
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.58 E-value=2e+02 Score=17.65 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=24.2
Q ss_pred CCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 040252 121 TGFIERQEVKQMLIALLCESEMKLADETIEIILD 154 (213)
Q Consensus 121 ~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~ 154 (213)
+-.|+.+-++.++..+ |...|+..+..+.+
T Consensus 29 NPpine~mir~M~~QM----G~kpSekqi~Q~m~ 58 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQM----GRKPSEKQIKQMMR 58 (64)
T ss_pred CCCCCHHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 4578888888888777 99999988888774
No 224
>KOG1228 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.25 E-value=31 Score=26.57 Aligned_cols=20 Identities=30% Similarity=0.698 Sum_probs=16.7
Q ss_pred cccccccCCcccccchhhhh
Q 040252 192 LRDITTSFPSFIFNSEVDEI 211 (213)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~ 211 (213)
.+++.+.|.+||+|+.-+..
T Consensus 109 ~rei~ykfEP~IlhVqcrdl 128 (256)
T KOG1228|consen 109 IREITYKFEPFILHVQCRDL 128 (256)
T ss_pred chhheeeccceEEEEehhhh
Confidence 56889999999999987654
No 225
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=22.11 E-value=1.6e+02 Score=16.50 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=8.4
Q ss_pred CCCcccHHHHHHHH
Q 040252 48 DDGLISKEEFQLAL 61 (213)
Q Consensus 48 ~~G~i~~~ef~~~l 61 (213)
.-|.|+.+|+..+-
T Consensus 28 ~~~~IT~eey~eIT 41 (45)
T TIGR01669 28 EKKLITREQYKVIT 41 (45)
T ss_pred hcCccCHHHHHHHh
Confidence 34667777766543
No 226
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=21.95 E-value=1.7e+02 Score=21.24 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=23.8
Q ss_pred hcccccCCCCCcccHHHHHHHHHHHHhhcccCCC
Q 040252 112 SFKLYDLDNTGFIERQEVKQMLIALLCESEMKLA 145 (213)
Q Consensus 112 ~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~ 145 (213)
-....|..+.++||.+|++.++-.+....+..++
T Consensus 74 rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P 107 (148)
T PF12486_consen 74 RLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVP 107 (148)
T ss_pred HHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCC
Confidence 3445677788889999999988776444444444
No 227
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.87 E-value=1.9e+02 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=15.1
Q ss_pred hHHHHHHhcccccCCCCCcccHHHHHH
Q 040252 105 QEDKIDFSFKLYDLDNTGFIERQEVKQ 131 (213)
Q Consensus 105 ~~~~l~~~F~~~D~d~~g~I~~~E~~~ 131 (213)
+...+-.++++-|.|.+|.++-+||.-
T Consensus 475 pnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 475 PNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 334455555666666666666666543
No 228
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.83 E-value=1.7e+02 Score=16.49 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=21.0
Q ss_pred CCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 040252 120 NTGFIERQEVKQMLIALLCESEMKLADETIEIIL 153 (213)
Q Consensus 120 ~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~ 153 (213)
..|.|+ +++.++..+ ...|..+++..++.++
T Consensus 14 ~~GlI~--~~~~~l~~l-~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLIS--EVKPLLDRL-QQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChh--hHHHHHHHH-HHcCcccCHHHHHHHH
Confidence 346676 566666655 5558888888777776
No 229
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=20.95 E-value=3.9e+02 Score=20.53 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=20.8
Q ss_pred HHHhcccccCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 040252 109 IDFSFKLYDLDNTGFIERQEVKQMLIALLCESEMKLADETIEIILD 154 (213)
Q Consensus 109 l~~~F~~~D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~~ 154 (213)
...+.........|.+|..++..-+ +++..-+.+.+.
T Consensus 176 ~~~il~~~~~~~~g~vt~~~l~~~~---------~ws~~~a~~~L~ 212 (223)
T PF04157_consen 176 QSRILELAEEENGGGVTASELAEKL---------GWSVERAKEALE 212 (223)
T ss_dssp HHHHHHHH--TTTSEEEHHHHHHHH---------TB-HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHh---------CCCHHHHHHHHH
Confidence 3444555524556888888888764 456555555553
No 230
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=20.95 E-value=2.1e+02 Score=21.47 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=24.0
Q ss_pred cCCCCCcccHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 040252 117 DLDNTGFIERQEVKQMLIALLCESEMKLADETIEIIL 153 (213)
Q Consensus 117 D~d~~g~I~~~E~~~~l~~~~~~~~~~l~~~~~~~~~ 153 (213)
..|.+|.+..+++.+.++.- +..++.+++.+++
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~----~~~~t~~~l~~vV 59 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKA----YKWVTRELLEAVV 59 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHc----cCCCCHHHHHHHH
Confidence 35678899999888877543 4567777777776
No 231
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=20.38 E-value=1.1e+02 Score=20.75 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=25.1
Q ss_pred CCHHHHHhhcCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHH
Q 040252 16 EDPVLLASQTAFSVSEVEALFELFKMISSSVVDDGLISKEEFQLAL 61 (213)
Q Consensus 16 ~~~~~~~~~~~~s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l 61 (213)
+.-..+.....++..+|+.+++ +.| ++..+|.+.|
T Consensus 33 ~~~~~l~~~~~ls~~eIk~iRe----------~~~-lSQ~vFA~~L 67 (104)
T COG2944 33 ETKACLLKVKTLSPTEIKAIRE----------KLG-LSQPVFARYL 67 (104)
T ss_pred HHHHhhccCCCCCHHHHHHHHH----------HhC-CCHHHHHHHH
Confidence 4455666666788888888884 333 8888888777
No 232
>PLN02223 phosphoinositide phospholipase C
Probab=20.32 E-value=4.2e+02 Score=23.78 Aligned_cols=65 Identities=8% Similarity=-0.090 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHH---HhcC---ccchHHHHHHHHHhcCC--------CCCcccHHHHH
Q 040252 28 SVSEVEALFELFKMISSSVVDDGLISKEEFQLAL---FKNR---KKENLFANRIFDLFDVK--------RKGVIDFSDFV 93 (213)
Q Consensus 28 s~~ei~~l~~~F~~~d~~~~~~G~i~~~ef~~~l---~~~~---~~~~~~~~~l~~~~d~~--------~~g~i~~~ef~ 93 (213)
.+++|+.++..|. + ++|.++...+.+.| .... ......++.++..+-.. ..+.++.+.|.
T Consensus 14 ~p~~v~~~f~~~~----~--~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~ 87 (537)
T PLN02223 14 QPDLILNFFGNEF----H--GYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLN 87 (537)
T ss_pred CcHHHHHHHHHhh----c--CCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHH
Confidence 5666666666554 2 78899999998877 2211 11233345555544322 12569999999
Q ss_pred HHHhh
Q 040252 94 RSLSV 98 (213)
Q Consensus 94 ~~~~~ 98 (213)
.++..
T Consensus 88 ~~L~s 92 (537)
T PLN02223 88 EFLFS 92 (537)
T ss_pred HHhcC
Confidence 88743
No 233
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=20.19 E-value=1.7e+02 Score=20.79 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=35.2
Q ss_pred CCCcccHHHHHHHHHHHH-----hhcccCCCHHHHHHHHHHHHHhhCCCCCC-cccHHHHHHHH
Q 040252 120 NTGFIERQEVKQMLIALL-----CESEMKLADETIEIILDKTFLDADVNQDG-KIDKCEWQNFV 177 (213)
Q Consensus 120 ~~g~I~~~E~~~~l~~~~-----~~~~~~l~~~~~~~~~~~~f~~~d~~~~g-~Is~~eF~~~l 177 (213)
|+-.||.+||.+++..-- ...-..+.+++++.+. +.+.....+ .+|..|.+++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~----~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRAL----AFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHH----HHHHhccccCCCCHHHHHHHh
Confidence 567899999999886420 0112467788888887 444444444 48888877653
No 234
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=20.05 E-value=2.6e+02 Score=18.14 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=24.7
Q ss_pred CCCcccHHHHHHH---HHhcCccchHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 040252 48 DDGLISKEEFQLA---LFKNRKKENLFANRIFDLFDVKRKGVIDFSDFVRSLSV 98 (213)
Q Consensus 48 ~~G~i~~~ef~~~---l~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 98 (213)
-||.++..|...+ +..... .....+.+...+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGL-DAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 4788887776533 222222 2222344444444433333666666665544
Done!