BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040253
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 570 bits (1468), Expect = e-163, Method: Compositional matrix adjust.
Identities = 262/326 (80%), Positives = 301/326 (92%)
Query: 1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
MGS +ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 61 WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C AKTV
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMT WMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180
Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
NNIDFI+IIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240
Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
LFE+P A+GRYICSSH IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300
Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLP 326
GF+FKYSL+DMFTGAVDTCRAKGLLP
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLLP 326
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 313 bits (803), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 156/329 (47%), Positives = 226/329 (68%), Gaps = 11/329 (3%)
Query: 6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
+T CV G +GF+ S L+ LL++GYAV TVRDPDN+KKV HLLEL + L +++ADL
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELG-DLKIFRADL 68
Query: 66 AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
+E +F+ PI GC VFH+ATP+ F S+DPEN++I+P I G+V++M+AC AK+V+R++
Sbjct: 69 TDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVIL 128
Query: 126 TSSAGTLDVEE--HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
TSSA + + + V DE +W+D++F+ S K W Y SKTLAE+AAWKFAEENNI
Sbjct: 129 TSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNI 188
Query: 184 DFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV-------HLDDLCS 236
D I++IP+L+ G LTS +P S+ A+S IT NE +K Q + H++D+C
Sbjct: 189 DLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCR 248
Query: 237 AHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKK 296
AHIF+ E +A GRYIC + ++ ELAKFL ++YP++ VPT+F D K ++ SS+K
Sbjct: 249 AHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSK-LIISSEK 307
Query: 297 LTDLGFKFKYSLDDMFTGAVDTCRAKGLL 325
L GF FKY +++++ +V+ +AKGLL
Sbjct: 308 LVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 270 bits (690), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 197/321 (61%), Gaps = 5/321 (1%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLA 66
VCVTG +GF+GSW+I LLE GY+V T+R DP+ K+ V L LP AS L + ADL+
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 67 EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
+F I GC G+FH A+P+DF +PE V + T++G + I++AC N+KTV+R ++T
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
SS + K V DE+ WSD+D +RSVK GW Y VSKTLAE+A +F E+N ID +
Sbjct: 124 SSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVV 183
Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
++I +VG F+ +P S+ AL + + + + VH+DD+ AHI+L E+
Sbjct: 184 TLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRF-HMVHVDDVARAHIYLLENSV 242
Query: 247 AKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNML--FSSKKLTDLGFKF 304
GRY CS I E+++ L KYPE+ + T +++ E L ++KKL D GF F
Sbjct: 243 PGGRYNCSPFIVPIEEMSQLLSAKYPEYQILT-VDELKEIKGARLPDLNTKKLVDAGFDF 301
Query: 305 KYSLDDMFTGAVDTCRAKGLL 325
KY+++DMF A+ C+ KG L
Sbjct: 302 KYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 13/199 (6%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTGA+GF+ S ++ +LLE GY VR T R ++ + T D+ +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK 73
Query: 68 EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
+G +DE I+G GV H+A+ + F +K +EV+ P I G ++ +RA +V+R V TS
Sbjct: 74 QGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 128 S-AGTLDVEEHRKPVY-DETSWS--DLDFVRSV-----KMTGWMYFVSKTLAEQAAWKFA 178
S L + + + +Y DE SW+ +D +++ + + W+Y SKT AE AAWKF
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFM 191
Query: 179 EENNIDFI--SIIPSLVVG 195
+EN F +++P+ +G
Sbjct: 192 DENKPHFTLNAVLPNYTIG 210
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 13/199 (6%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTGA+GF+ S ++ +LLE GY VR T R ++ + T D +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDXLK 73
Query: 68 EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
+G +DE I+G GV H+A+ + F +K +EV+ P I G ++ +RA +V+R V TS
Sbjct: 74 QGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 128 S-AGTLDVEEHRKPVY-DETSWS--DLDFVRSV-----KMTGWMYFVSKTLAEQAAWKFA 178
S L + + + +Y DE SW+ +D +++ + + W+Y SKT AE AAWKF
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFX 191
Query: 179 EENNIDFI--SIIPSLVVG 195
+EN F +++P+ +G
Sbjct: 192 DENKPHFTLNAVLPNYTIG 210
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
+ + + GASGF+GS L+ L RG+ V A VR P+ K K++ + HL + KAD+
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE-KIKIE--------NEHLKVKKADV 55
Query: 66 AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
+ + DE C G + + + +P ++ TI ++I+ K A V R +
Sbjct: 56 S---SLDEVCEVCKGADAVISAFNPGWNNP--DIYDETIKVYLTIIDGVKKA-GVNRFLX 109
Query: 126 TSSAGTL------------DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF 164
AG+L +V E+ P L+F+ K W++F
Sbjct: 110 VGGAGSLFIAPGLRLXDSGEVPENILPGVKALGEFYLNFLXKEKEIDWVFF 160
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8 VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
V + G +GFIG+ L RLL E Y V D + L P H + D++
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67 EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
+ E ++ C V L ATP+++ +++P V + I+R C K +R
Sbjct: 69 IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
++F S+A + + Y + S+L V V W+Y VSK L ++ W + E+
Sbjct: 125 IIFPSTAEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
+ F P +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8 VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
V + G +GFIG+ L RLL E Y V D + L P H + D++
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67 EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
+ E ++ C V L ATP+++ +++P V + I+R C K +R
Sbjct: 69 IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
++F S++ + + Y + S+L V V W+Y VSK L ++ W + E+
Sbjct: 125 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
+ F P +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8 VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
V + G +GFIG+ L RLL E Y V D + L P H + D++
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67 EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
+ E ++ C V L ATP+++ +++P V + I+R C K +R
Sbjct: 69 IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
++F S++ + + Y + S+L V V W+Y VSK L ++ W + E+
Sbjct: 125 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
+ F P +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8 VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
V + G +GFIG+ L RLL E Y V D + L P H + D++
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 55
Query: 67 EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
+ E ++ C V L ATP+++ +++P V + I+R C K +R
Sbjct: 56 IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 111
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
++F S++ + + Y + S+L V V W+Y VSK L ++ W + E+
Sbjct: 112 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 167
Query: 183 IDFISIIPSLVVGPFLTS 200
+ F P +GP L +
Sbjct: 168 LQFTLFRPFNWMGPRLDN 185
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8 VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
V + G +GFIG+ L RLL E Y V D + L P H + D++
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67 EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
+ E ++ C V L ATP+++ +++P V + I+R C K +R
Sbjct: 69 IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
++F S++ + + Y + S+L V V W+Y VSK L ++ W + E+
Sbjct: 125 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
+ F P +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8 VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
V + G +GFIG+ L RLL E Y V D + L P H + D++
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67 EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
+ E ++ C V L ATP+++ +++P V + I+R C K +R
Sbjct: 69 IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
++F S++ + + Y + S+L V V W+Y VSK L ++ W + E+
Sbjct: 125 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
+ F P +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 10 VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
VTGA+G +GS A+R + ++ ++ +++L A H + DLA+
Sbjct: 7 VTGAAGGVGS-----------AIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQ 55
Query: 70 NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA 129
+ ++ C G+ HL + P N++++ I G ++ A +N R+VF SS
Sbjct: 56 AVHDLVKDCDGIIHLGG---VSVERPWNDILQANIIGAYNLYEAARNLGK-PRIVFASS- 110
Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISI 188
H Y T+ D + R +Y +SK E A + + +I+ ++I
Sbjct: 111 ------NHTIGYYPRTTRIDTEVPRRPDS---LYGLSKCFGEDLASLYYHKFDIETLNI 160
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 20/196 (10%)
Query: 8 VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
V + G +GFIG+ L RLL E Y V D + L P H + D++
Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 370
Query: 67 EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
+ E ++ C V L ATP+++ +++P V + I+R C K +R
Sbjct: 371 IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 426
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
++F S++ + + Y + S+L V V W+Y VSK L ++ W + E+
Sbjct: 427 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 482
Query: 183 IDFISIIPSLVVGPFL 198
+ F P +GP L
Sbjct: 483 LQFTLFRPFNWMGPRL 498
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 4 IAETVCVTGASGFIGSWLIMRLLERGY----------AVRATVRDPDNKKKVKHLLELPK 53
+AE V VTG +G+IGS ++ LLE GY A R P++ ++V+ L
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL----- 55
Query: 54 ASTHLTLWKADLAEEGNFDEPIRGCT--GVFHLATPMDF-ESKDPENEVIRPTINGMVSI 110
+ + D+ ++G + + V H A ES + R + G + +
Sbjct: 56 TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQL 115
Query: 111 MRACKNAKTVRRLVFTSSA 129
+ K A V+ LVF+SSA
Sbjct: 116 LEIMK-AHGVKNLVFSSSA 133
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 50/336 (14%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
+ VTG+SG IG+ L+ L E+ KK V + + + + D++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKY-----------GKKNVIASDIVQRDTGGIKFITLDVSN 50
Query: 68 EGNFDEPIRGCT--GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
D + + +FHLA + + + + +NG +I+ A K + V ++V
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVI 109
Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
S+ G E + V T + MY V+K AE + E+ +D
Sbjct: 110 PSTIGVFGPETPKNKVPSIT----------ITRPRTMYGVTKIAAELLGQYYYEKFGLD- 158
Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF------------VHLDD 233
+ SL ++ P+ T + E Y +K+ ++ +++ D
Sbjct: 159 ---VRSLRYPGIISYKAEPTAGTTDYAV---EIFYYAVKREKYKCYLAPNRALPMMYMPD 212
Query: 234 LCSAHIFLFEHPNAK----GRYICSSHPATILELAKFLREKYPEFNV--PTEFED-VDEN 286
A + L+E K Y +++ T EL ++E+ PEF + +F D +
Sbjct: 213 ALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAAT 272
Query: 287 MKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAK 322
L SS+ + GF +Y LD +D K
Sbjct: 273 WPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEK 308
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 4 IAETVCVTGASGFIGSWLIMRLLERGY----------AVRATVRDPDNKKKVKHLLELPK 53
+AE V VTG +G+IGS ++ LLE GY A R P++ ++V+ L
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL----- 55
Query: 54 ASTHLTLWKADLAEEGNFDEPIRGCT--GVFHLATPMDF-ESKDPENEVIRPTINGMVSI 110
+ + D+ ++G + + V H A ES + R + G + +
Sbjct: 56 TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQL 115
Query: 111 MRACKNAKTVRRLVFTSSA 129
+ K A V+ LVF+SSA
Sbjct: 116 LEIMK-AHGVKNLVFSSSA 133
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 112/282 (39%), Gaps = 38/282 (13%)
Query: 2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLW 61
GS + V +TG G IGS + LLERG V D + +HL + P +LT
Sbjct: 18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGI--DNFATGRREHLKDHP----NLTFV 71
Query: 62 KADLAEEGNFDEPIRGCT--GVFHLATPMDFESKDPE---NEVIRPTINGMVSIMRACKN 116
+ +A+ ++ I V H A KDP+ N+ + + G + A KN
Sbjct: 72 EGSIADHALVNQLIGDLQPDAVVHTAASY----KDPDDWYNDTLTNCVGGSNVVQAAKKN 127
Query: 117 AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWK 176
V R V+ +A V+ ++PV LD R+ + Y +SK+ E
Sbjct: 128 --NVGRFVYFQTALCYGVKPIQQPVR-------LDHPRNPANSS--YAISKSANED---- 172
Query: 177 FAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
+ E + +DF++ + VVGP S P LS + + + FV + DL
Sbjct: 173 YLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLS---EGKKCFVTKARRDFVFVKDLAR 229
Query: 237 AHIFLFEHPNAKGRYICSSHPATILELAKFLRE-----KYPE 273
A + + + S I EL + E YPE
Sbjct: 230 ATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPE 271
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 4 IAETVCVTGASGFIGSWLIMRLLERGY----------AVRATVRDPDNKKKVKHLLELPK 53
+AE V VTG +G+IGS ++ LLE GY A R P++ ++V+ L
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL----- 55
Query: 54 ASTHLTLWKADLAEEGNFDEPIRGCT--GVFHLATPMDF-ESKDPENEVIRPTINGMVSI 110
+ + D+ ++G + + V H A ES + R + G + +
Sbjct: 56 TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQL 115
Query: 111 MRACKNAKTVRRLVFTSSA 129
+ K A V+ LVF+SSA
Sbjct: 116 LEIMK-AHGVKNLVFSSSA 133
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 50/336 (14%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
+ VTG+SG IG+ L+ L E+ KK V + + + + D++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKY-----------GKKNVIASDIVQRDTGGIKFITLDVSN 50
Query: 68 EGNFDEPIRGCT--GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
D + + +FHLA + + + + +NG +I+ A K + V ++V
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVI 109
Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
S+ G E + V + R M G V+K AE + E+ +D
Sbjct: 110 PSTIGVFGPETPKNKV------PSITITRPRTMFG----VTKIAAELLGQYYYEKFGLD- 158
Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF------------VHLDD 233
+ SL ++ P+ T + E Y +K+ ++ +++ D
Sbjct: 159 ---VRSLRYPGIISYKAEPTAGTTDYAV---EIFYYAVKREKYKCYLAPNRALPMMYMPD 212
Query: 234 LCSAHIFLFEHPNAK----GRYICSSHPATILELAKFLREKYPEFNV--PTEFED-VDEN 286
A + L+E K Y +++ T EL ++E+ PEF + +F D +
Sbjct: 213 ALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAAT 272
Query: 287 MKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAK 322
L SS+ + GF +Y LD +D K
Sbjct: 273 WPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEK 308
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 128/333 (38%), Gaps = 64/333 (19%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
+ VTG +GFIGS ++ +L E V N++ V L KADLA
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEAARLV---------KADLAA 54
Query: 68 EGNFDEPIRGCTGVFHLATPMDFE--SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
+ + + ++G V+H+A D +++P +E+ R + ++ A + A V R+VF
Sbjct: 55 D-DIKDYLKGAEEVWHIAANPDVRIGAENP-DEIYRNNVLATYRLLEAMRKA-GVSRIVF 111
Query: 126 TSSAGTL----------DVEEHRKPVYDETSWSDLDFVRSV----KMTGWMYFVSKTLAE 171
TS++ D H +Y + + + S M W+Y
Sbjct: 112 TSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIY-------- 163
Query: 172 QAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ---- 227
+FA V+G T + I L RN I+ G+
Sbjct: 164 ----RFAN-------------VIGRRSTHGVIYDFIMKLK---RNPEELEILGNGEQNKS 203
Query: 228 FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKY---PEFNVPTEFEDV 283
++++ D A +F + I S + +A+ + E+ P F
Sbjct: 204 YIYISDCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGW 263
Query: 284 DENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAV 316
++ ML S +KL LG+K +Y+ ++ AV
Sbjct: 264 KGDVPVMLLSIEKLKRLGWKPRYNSEEAVRMAV 296
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELPKA--ST 56
G + +TG +G GS+L LLE+GY V VR N +++HL + P+A
Sbjct: 20 QGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEG 79
Query: 57 HLTLWKADLAE 67
++ L DL +
Sbjct: 80 NMKLHYGDLTD 90
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+SSA
Sbjct: 121 FSSSA 125
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+SSA
Sbjct: 121 FSSSA 125
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+SSA
Sbjct: 121 FSSSA 125
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+SSA
Sbjct: 121 FSSSA 125
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+S+A
Sbjct: 121 FSSTA 125
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+S+A
Sbjct: 121 FSSAA 125
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+S+A
Sbjct: 121 FSSAA 125
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+S+A
Sbjct: 121 FSSAA 125
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+S+A
Sbjct: 121 FSSAA 125
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 129/322 (40%), Gaps = 46/322 (14%)
Query: 5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKK-VKHLLELPKASTHLTLWK 62
A+ V + G +GFIG L R+LE + V D VKH + ++
Sbjct: 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH--------ERMHFFE 75
Query: 63 ADLAEEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAK 118
D+ + E ++ C + L ATP + K P V + I+R+ K
Sbjct: 76 GDITINKEWVEYHVKKCDVILPLVAIATPATY-VKQPL-RVFELDFEANLPIVRSA--VK 131
Query: 119 TVRRLVF--TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWK 176
+ LVF TS + +E P ++ ++ R W+Y SK L ++ W
Sbjct: 132 YGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPR------WIYACSKQLMDRVIWG 185
Query: 177 FAEENNIDFISIIPSLVVGPFLTSSMPPS------LITALSPITRNEAHYPIIKQGQ--- 227
+ E ++F P +GP L S P + L I R E + ++ G
Sbjct: 186 YGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGE-NISLVDGGSQKR 243
Query: 228 -FVHLDDLCSAHIFLFEHPN--AKGRYICSSHPA---TILELAKFLREKYPEFNVPTEFE 281
F ++DD SA + + E+ N A G+ +P ++ ELA + E EF E+
Sbjct: 244 AFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEF---PEYA 300
Query: 282 DVDENMKNMLFSSKKLTDLGFK 303
D + +K + +S G++
Sbjct: 301 DSAKRVKLVETTSGAYYGNGYQ 322
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 28/147 (19%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
+ VTG +GFIGS L+ +L+E GY V DN + P A H+ DL +
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVV----DNLSSGRREFVNPSAELHVR----DL-K 53
Query: 68 EGNFDEPIRGCTGVFHLATPMDFESKDPE-----NEVIRPTINGMVSIMRACKNAKTVRR 122
+ ++ I+G VFH A + E NE + T N ++ + VR
Sbjct: 54 DYSWGAGIKGDV-VFHFAANPEVRLSTTEPIVHFNENVVATFN----VLEWARQTG-VRT 107
Query: 123 LVFTSSA---GTLDV-----EEHRKPV 141
+VF SS+ G DV EE KP+
Sbjct: 108 VVFASSSTVYGDADVIPTPEEEPYKPI 134
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
V VTG SG+IGS ++LL+ G+ V ++K+ V ++E H T + D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTFVEGDIRN 61
Query: 68 EGNFDEPI--RGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
E E + V H A ES E +NG + ++ A + A V+ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVKNFI 120
Query: 125 FTSSA 129
F+S A
Sbjct: 121 FSSVA 125
>pdb|4BB5|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
pdb|4BB5|B Chain B, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
pdb|4BB5|C Chain C, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
pdb|4BB5|D Chain D, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
Length = 292
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKA 63
+ V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 34 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIA 90
Query: 64 DLAEEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 91 GTMEDMTFAEQFVAQAG 107
>pdb|2ILT|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Sulfone Inhibitor
Length = 275
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLA 66
V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 27 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIAGTM 83
Query: 67 EEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 84 EDMTFAEQFVAQAG 97
>pdb|2RBE|A Chain A, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1
Inhibitors
pdb|2RBE|B Chain B, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1
Inhibitors
pdb|2RBE|C Chain C, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1
Inhibitors
pdb|2RBE|D Chain D, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1
Inhibitors
pdb|3BYZ|A Chain A, 2-Amino-1,3-Thiazol-4(5h)-Ones As Potent And Selective
11- Hydroxysteroid Dehydrogenase Type 1 Inhibitors
pdb|3BYZ|B Chain B, 2-Amino-1,3-Thiazol-4(5h)-Ones As Potent And Selective
11- Hydroxysteroid Dehydrogenase Type 1 Inhibitors
pdb|3BYZ|C Chain C, 2-Amino-1,3-Thiazol-4(5h)-Ones As Potent And Selective
11- Hydroxysteroid Dehydrogenase Type 1 Inhibitors
pdb|3BYZ|D Chain D, 2-Amino-1,3-Thiazol-4(5h)-Ones As Potent And Selective
11- Hydroxysteroid Dehydrogenase Type 1 Inhibitors
pdb|3EY4|A Chain A, Further Studies With The 2-Amino-1,3-Thiazol-4(5h)-One
Class Of 11-Hydroxysteroid Dehydrogenase Type 1
(11-Hsd1) Inhibitors: Reducing Pregnane X Receptor
(Pxr) Activity And Exploring Activity In A Monkey
Pharmacodynamic Model
pdb|3EY4|B Chain B, Further Studies With The 2-Amino-1,3-Thiazol-4(5h)-One
Class Of 11-Hydroxysteroid Dehydrogenase Type 1
(11-Hsd1) Inhibitors: Reducing Pregnane X Receptor
(Pxr) Activity And Exploring Activity In A Monkey
Pharmacodynamic Model
pdb|3EY4|C Chain C, Further Studies With The 2-Amino-1,3-Thiazol-4(5h)-One
Class Of 11-Hydroxysteroid Dehydrogenase Type 1
(11-Hsd1) Inhibitors: Reducing Pregnane X Receptor
(Pxr) Activity And Exploring Activity In A Monkey
Pharmacodynamic Model
pdb|3EY4|D Chain D, Further Studies With The 2-Amino-1,3-Thiazol-4(5h)-One
Class Of 11-Hydroxysteroid Dehydrogenase Type 1
(11-Hsd1) Inhibitors: Reducing Pregnane X Receptor
(Pxr) Activity And Exploring Activity In A Monkey
Pharmacodynamic Model
Length = 275
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLA 66
V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 20 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIAGTM 76
Query: 67 EEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 77 EDMTFAEQFVAQAG 90
>pdb|1XU7|A Chain A, Crystal Structure Of The Interface Open Conformation Of
Tetrameric 11b-hsd1
pdb|1XU7|B Chain B, Crystal Structure Of The Interface Open Conformation Of
Tetrameric 11b-hsd1
pdb|1XU7|C Chain C, Crystal Structure Of The Interface Open Conformation Of
Tetrameric 11b-hsd1
pdb|1XU7|D Chain D, Crystal Structure Of The Interface Open Conformation Of
Tetrameric 11b-hsd1
pdb|1XU9|A Chain A, Crystal Structure Of The Interface Closed Conformation Of
11b-Hydroxysteroid Dehydrogenase Isozyme 1
pdb|1XU9|B Chain B, Crystal Structure Of The Interface Closed Conformation Of
11b-Hydroxysteroid Dehydrogenase Isozyme 1
pdb|1XU9|C Chain C, Crystal Structure Of The Interface Closed Conformation Of
11b-Hydroxysteroid Dehydrogenase Isozyme 1
pdb|1XU9|D Chain D, Crystal Structure Of The Interface Closed Conformation Of
11b-Hydroxysteroid Dehydrogenase Isozyme 1
pdb|3BZU|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase(Hsd1) In Complex With Nadp And Thiazolone
Inhibitor
pdb|3BZU|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase(Hsd1) In Complex With Nadp And Thiazolone
Inhibitor
pdb|3BZU|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase(Hsd1) In Complex With Nadp And Thiazolone
Inhibitor
pdb|3BZU|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase(Hsd1) In Complex With Nadp And Thiazolone
Inhibitor
pdb|3CZR|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With
Arylsulfonylpiperazine Inhibitor
pdb|3CZR|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With
Arylsulfonylpiperazine Inhibitor
pdb|3D3E|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Benzamide Inhibitor
pdb|3D3E|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Benzamide Inhibitor
pdb|3D3E|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Benzamide Inhibitor
pdb|3D3E|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Benzamide Inhibitor
pdb|3D4N|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Sulfonamide
Inhibitor
pdb|3D4N|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Sulfonamide
Inhibitor
pdb|3D4N|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Sulfonamide
Inhibitor
pdb|3D4N|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase (Hsd1) In Complex With Sulfonamide
Inhibitor
pdb|3FRJ|A Chain A, Crystal Structure Of 11b-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Piperidyl Benzamide Inhibitor
pdb|3FRJ|B Chain B, Crystal Structure Of 11b-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Piperidyl Benzamide Inhibitor
pdb|3HFG|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An Sulfonyl-Piperazine Inhibitor
pdb|3HFG|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An Sulfonyl-Piperazine Inhibitor
pdb|3HFG|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An Sulfonyl-Piperazine Inhibitor
pdb|3HFG|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An Sulfonyl-Piperazine Inhibitor
pdb|3FCO|A Chain A, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Benzamide Inhibitor
pdb|3FCO|B Chain B, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Benzamide Inhibitor
pdb|3H6K|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An
Ortho-Chlro-Sulfonyl-Piperazine Inhibitor
pdb|3H6K|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An
Ortho-Chlro-Sulfonyl-Piperazine Inhibitor
pdb|3H6K|C Chain C, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An
Ortho-Chlro-Sulfonyl-Piperazine Inhibitor
pdb|3H6K|D Chain D, Crystal Structure Of Human 11-Beta-Hydroxysteroid-
Dehydrogenase Bound To An
Ortho-Chlro-Sulfonyl-Piperazine Inhibitor
pdb|3OQ1|A Chain A, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Diarylsulfone Inhibitor
pdb|3OQ1|B Chain B, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Diarylsulfone Inhibitor
pdb|3OQ1|C Chain C, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Diarylsulfone Inhibitor
pdb|3OQ1|D Chain D, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase-1
(11b-Hsd1) In Complex With Diarylsulfone Inhibitor
pdb|3QQP|A Chain A, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Urea Inhibitor
pdb|3QQP|B Chain B, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Urea Inhibitor
pdb|3QQP|C Chain C, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Urea Inhibitor
pdb|3QQP|D Chain D, Crystal Structure Of 11beta-Hydroxysteroid Dehydrogenase 1
(11b-Hsd1) In Complex With Urea Inhibitor
Length = 286
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKA 63
+ V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 28 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIA 84
Query: 64 DLAEEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 85 GTMEDMTFAEQFVAQAG 101
>pdb|3PDJ|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase 1 (11b-Hsd1) In Complex With
4,4-Disubstituted Cyclohexylbenzamide Inhibitor
pdb|3PDJ|B Chain B, Crystal Structure Of Human 11-Beta-Hydroxysteroid
Dehydrogenase 1 (11b-Hsd1) In Complex With
4,4-Disubstituted Cyclohexylbenzamide Inhibitor
Length = 273
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLA 66
V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 18 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIAGTM 74
Query: 67 EEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 75 EDMTFAEQFVAQAG 88
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 10 VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
VTGA+G +G + RL +R + L L A + + DLA+
Sbjct: 8 VTGAAGQLGRVMRERLAPMAEILR-----------LADLSPLDPAGPNEECVQCDLADAN 56
Query: 70 NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA 129
+ + GC G+ HL + P ++++ I G+ ++ A + A R+VF SS
Sbjct: 57 AVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAAR-AHGQPRIVFASSN 112
Query: 130 GTL 132
T+
Sbjct: 113 HTI 115
>pdb|2IRW|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|B Chain B, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|C Chain C, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|D Chain D, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|E Chain E, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|F Chain F, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|G Chain G, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
pdb|2IRW|H Chain H, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With
Nadp And Adamantane Ether Inhibitor
Length = 264
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLA 66
V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 12 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIAGTM 68
Query: 67 EEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 69 EDMTFAEQFVAQAG 82
>pdb|3D5Q|A Chain A, Crystal Structure Of 11b-Hsd1 In Complex With Triazole
Inhibitor
pdb|3D5Q|B Chain B, Crystal Structure Of 11b-Hsd1 In Complex With Triazole
Inhibitor
pdb|3D5Q|C Chain C, Crystal Structure Of 11b-Hsd1 In Complex With Triazole
Inhibitor
pdb|3D5Q|D Chain D, Crystal Structure Of 11b-Hsd1 In Complex With Triazole
Inhibitor
Length = 272
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKA 63
+ V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIA 70
Query: 64 DLAEEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 71 GTMEDMTFAEQFVAQAG 87
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 10 VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
VTGA+G +G + RL +R + L L A + + DLA+
Sbjct: 8 VTGAAGQLGRVMRERLAPMAEILR-----------LADLSPLDPAGPNEECVQCDLADAN 56
Query: 70 NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA 129
+ + GC G+ HL + P ++++ I G+ ++ A + A R+VF SS
Sbjct: 57 AVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYNLYEAAR-AHGQPRIVFASSN 112
Query: 130 GTL 132
T+
Sbjct: 113 HTI 115
>pdb|4BB6|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
pdb|4BB6|B Chain B, Free-Wilson And Structural Approaches To Co-Optimising
Human And Rodent Isoform Potency For 11b-Hydroxysteroid
Dehydrogenase Type 1 11b-Hsd1 Inhibitors
Length = 292
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKA 63
+ V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 34 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIA 90
Query: 64 DLAEEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 91 GTMEDMTFAEQFVAQAG 107
>pdb|2BEL|A Chain A, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In
Complex With Nadp And Carbenoxolone
pdb|2BEL|B Chain B, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In
Complex With Nadp And Carbenoxolone
pdb|2BEL|C Chain C, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In
Complex With Nadp And Carbenoxolone
pdb|2BEL|D Chain D, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In
Complex With Nadp And Carbenoxolone
Length = 283
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKA 63
+ V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 31 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIA 87
Query: 64 DLAEEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 88 GTMEDMTFAEQFVAQAG 104
>pdb|3CH6|A Chain A, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|B Chain B, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|D Chain D, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3CH6|E Chain E, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r,
F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3-
Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone
pdb|3TFQ|A Chain A, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|B Chain B, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|D Chain D, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
pdb|3TFQ|E Chain E, Crystal Structure Of 11b-Hsd1 Double Mutant (L262r, F278e)
Complexed With
8-{[(2-Cyanopyridin-3-Yl)methyl]sulfanyl}-6-Hydroxy-3,
4-Dihydro- 1h-Pyrano[3,4-C]pyridine-5-Carbonitrile
Length = 286
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKA 63
+ V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 28 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIA 84
Query: 64 DLAEEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 85 GTMEDMTFAEQFVAQAG 101
>pdb|4HFR|A Chain A, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In
Complex With An Orally Bioavailable Acidic Inhibitor
Azd4017.
pdb|4HFR|B Chain B, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In
Complex With An Orally Bioavailable Acidic Inhibitor
Azd4017
Length = 272
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKA 63
+ V VTGAS IG + L + G V T R + +K V H LEL AS H + A
Sbjct: 14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAH---YIA 70
Query: 64 DLAEEGNFDEPIRGCTG 80
E+ F E G
Sbjct: 71 GTMEDMTFAEQFVAQAG 87
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKAST---HLTLWKA 63
T+ VTG +G+IGS + LL GY V ++K++ +E T H T
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD 66
Query: 64 DLAEEGNFD-EPIRGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVR 121
+ A FD PI T H A ES E R ++ ++S++R + + V+
Sbjct: 67 ERALARIFDAHPI---TAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRE-RAVK 122
Query: 122 RLVFTSSAGTLDVEEHRKPVYDET 145
R+VF+SSA V E R P+ DET
Sbjct: 123 RIVFSSSATVYGVPE-RSPI-DET 144
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELPKA-STHLTLW 61
++ +TG +G GS+L LLE+GY V R N ++V H+ + P + L
Sbjct: 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH 60
Query: 62 KADLAEEGNFDEPIR 76
DL++ N +R
Sbjct: 61 YGDLSDTSNLTRILR 75
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRA-TVRDPDNKKKVKHLLELPKASTHLTLWKA 63
+ V VTG +GF G WL + L G V+ ++ P V L E + + +
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP----TVPSLFETARVADGMQSEIG 64
Query: 64 DLAEEGNFDEPIRGCTG--VFHLAT-PMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
D+ ++ E IR VFH+A P+ S E + G V ++ A ++ V
Sbjct: 65 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 124
Query: 121 RRLVFTSSAGTLDVEE 136
+ +V +S D +E
Sbjct: 125 KAVVNITSDKCYDNKE 140
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 32/268 (11%)
Query: 3 SIAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLW 61
S ++ V VTG +G+IGS ++ L+E GY V A V L L K H+ +
Sbjct: 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH--HIPFY 66
Query: 62 KADLAEEGNFDEPIR--GCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAK 118
+ DL + ++ + V H A ES I G V ++ +
Sbjct: 67 EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY- 125
Query: 119 TVRRLVFTSSA---GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAW 175
V + VF+SSA G + P+ +E + K +++ +W
Sbjct: 126 NVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSW 185
Query: 176 KFAEENNIDFISIIPSLVVG--PFLTSSMPPSLITALSPIT--RNEAHY----------- 220
KFA + I PS ++G P +P +L+ ++ + R E Y
Sbjct: 186 KFAILRYFNPIGAHPSGLIGEDPL---GIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDG 242
Query: 221 -PIIKQGQFVHLDDLCSAHIFLFEHPNA 247
PI ++H+ DL HI ++ A
Sbjct: 243 TPI---RDYIHVVDLAKGHIAALQYLEA 267
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATV--RDPDNKKKVKHL 48
GS+ + VTG +G G++L LLE+GY V V R D + +++ L
Sbjct: 11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL 59
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From Lactobacillus
Casei. Northeast Structural Genomics Consortium Target
Lcr19
Length = 224
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 39/190 (20%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK-----VKHLLELPKASTHLTLWK 62
+ V GA+G GS ++ RG+ V A VRDP V L++ P T L
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDS 62
Query: 63 ADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
D + P G HL DF + +VS++R N+ T+
Sbjct: 63 VDAVVDA-LSVPWGSGRGYLHL----DFATH-------------LVSLLR---NSDTLAV 101
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN- 181
+ S++ +H P LDF S W L + ++F + N
Sbjct: 102 FILGSASLAXPGADH--PXI-------LDFPESAASQPWY---DGALYQYYEYQFLQXNA 149
Query: 182 NIDFISIIPS 191
N+++I I PS
Sbjct: 150 NVNWIGISPS 159
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAV 32
+ VTG +GFIGS L+ +L+E GY V
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 58/289 (20%), Positives = 100/289 (34%), Gaps = 41/289 (14%)
Query: 63 ADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
A++ + + +RG GV A + + EV + AC A+ V R
Sbjct: 63 AEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVA-SALGQTNPFYAACLQAR-VPR 120
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK-TLAEQAAWKFAEEN 181
+++ SA + P ++ + L +S Y + K L EQA + N
Sbjct: 121 ILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSS------YVLCKWALDEQA--REQARN 172
Query: 182 NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFL 241
+ + IP +V+G +ITA I E + + Q + + +
Sbjct: 173 GLPVVIGIPGMVLGELDIGPTTGRVITA---IGNGEMTHYVAGQRNVIDAAEAGRGLLMA 229
Query: 242 FEHPNAKGRYICSSHPATILEL----AKFLREKYPE-----------------FNVPTEF 280
E RY+ + H + +L A+ L + P+ + V +
Sbjct: 230 LERGRIGERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQL 289
Query: 281 EDVDENM------KNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKG 323
+DE L K +LGF +LDD A+D R G
Sbjct: 290 PLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDNG 338
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 14/139 (10%)
Query: 5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
+ V VTG +GF GSWL + L E G V+ D V L E+ + + L ++
Sbjct: 9 GKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDA---PTVPSLFEIVRLN---DLMESH 62
Query: 65 LAEEGNFDEPIRGCTG------VFHLAT-PMDFESKDPENEVIRPTINGMVSIMRACKNA 117
+ + +F E +R VFH+A P+ S + + + G V ++ K
Sbjct: 63 IGDIRDF-EKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQV 121
Query: 118 KTVRRLVFTSSAGTLDVEE 136
++ +V +S D E
Sbjct: 122 GNIKAVVNITSDKCYDNRE 140
>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From
Staphylococcus Aureus Complex With Nadph
pdb|3SJ7|B Chain B, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From
Staphylococcus Aureus Complex With Nadph
Length = 252
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKA 54
GS+ ++ VTGAS IG + ++L E GY V V +K+K + ++E KA
Sbjct: 7 GSMTKSALVTGASRGIGRSIALQLAEEGYNV--AVNYAGSKEKAEAVVEEIKA 57
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-LPKASTHLTLWKADLA 66
+ +TGA GFI S + RL G+ V A+ + KK +H+ E + HL DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCDEFHLV----DLR 82
Query: 67 EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSI-MRACKNAKTVRRLVF 125
N + G VF+LA M N + N M+S M ++R +
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFY 142
Query: 126 TSSA 129
SSA
Sbjct: 143 ASSA 146
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-LPKASTHLTLWKADLA 66
+ +TGA GFI S + RL G+ V A+ + KK +H+ E + HL DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCDEFHLV----DLR 82
Query: 67 EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSI-MRACKNAKTVRRLVF 125
N + G VF+LA M N + N M+S M ++R +
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFY 142
Query: 126 TSSA 129
SSA
Sbjct: 143 ASSA 146
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-LPKASTHLTLWKADLA 66
+ +TGA GFI S + RL G+ V A+ + KK +H+ E + HL DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCDEFHLV----DLR 82
Query: 67 EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSI-MRACKNAKTVRRLVF 125
N + G VF+LA M N + N M+S M ++R +
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFY 142
Query: 126 TSSA 129
SSA
Sbjct: 143 ASSA 146
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-LPKASTHLTLWKADLA 66
+ +TGA GFI S + RL G+ V A+ + KK +H+ E + HL DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTEDMFCDEFHLV----DLR 82
Query: 67 EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSI-MRACKNAKTVRRLVF 125
N + G VF+LA M N + N M+S M ++R +
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFY 142
Query: 126 TSSA 129
SSA
Sbjct: 143 ASSA 146
>pdb|2J1N|A Chain A, Osmoporin Ompc
pdb|2J1N|B Chain B, Osmoporin Ompc
pdb|2J1N|C Chain C, Osmoporin Ompc
pdb|2J4U|P Chain P, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|Q Chain Q, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|R Chain R, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|U Chain U, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|V Chain V, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|W Chain W, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2ZLE|D Chain D, Cryo-Em Structure Of Degp12OMP
pdb|3NB3|D Chain D, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|4A8D|M Chain M, Degp Dodecamer With Bound Omp
Length = 346
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISII 189
G+ D + VYD TSW+D+ + G + S +Q FA N DF ++
Sbjct: 86 GSFDYGRNYGVVYDVTSWTDV-----LPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLV 140
Query: 190 PSLVVG-PFLTSSMPPSLITALSPITRN 216
L + + PS S +T N
Sbjct: 141 DGLNFAVQYQGKNGNPSGEGFTSGVTNN 168
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of
Non-Ribosomal Peptide Synthetase From Mycobacterium
Tuberculosis
Length = 478
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 6 ETVCVTGASGFIGSWLIMRLLER 28
TV +TGA+GF+G +L++ LL R
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRR 96
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDP----DNKKKVKHLLELPKASTHLTLWKA 63
+ VTG GFIGS I +LE+ D N +K L + P+ T K
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPR----YTFVKG 61
Query: 64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEV-IRPTINGMVSIMRACKNAKTVRR 122
D+A+ E +R GV HLA + E+ + + G +++ + + R
Sbjct: 62 DVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVR 121
Query: 123 LVFTSS 128
V S+
Sbjct: 122 FVHVST 127
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGY----AVRATVRDPDNKKKVKHLLELPKASTHLTLWKA 63
+ VTG +GFIGS + +LL Y A V D + L A L
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPT-INGMVSIMRACKNAKTVRR 122
D+ + G +RG + H A + V T + G ++++ C V R
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGVGR 121
Query: 123 LVFTSS 128
+V S+
Sbjct: 122 VVHVST 127
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 90/268 (33%), Gaps = 34/268 (12%)
Query: 8 VCVTGASGFIGSWLIMRLLERGY----AVRATVRDPDNKKKVKHLLELPKASTHLTLWKA 63
+ VTG +GFIGS + +LL Y A V D + L A L
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPT-INGMVSIMRACKNAKTVRR 122
D+ + G +RG + H A + V T + G ++++ C V R
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGVGR 121
Query: 123 LVFTSSAGTLDVEEHRKPVY---DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
+V S+ VY D SW++ + Y SK ++ A +
Sbjct: 122 VVHVST----------NQVYGSIDSGSWTESSPLEPNS----PYAASKAGSDLVARAYHR 167
Query: 180 ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG----QFVHLDDLC 235
+D GP+ P LI + P+ G ++VH DD C
Sbjct: 168 TYGLDVRITRCCNNYGPY---QHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHC 224
Query: 236 SAHIFLFEHPNAKGRYICSSHPATILEL 263
+ A GR H LEL
Sbjct: 225 RGIALVL----AGGRAGEIYHIGGGLEL 248
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 135/341 (39%), Gaps = 44/341 (12%)
Query: 7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK----HLLELPKASTHLTLWK 62
V V G +GF+GS L+ RLLE G V + + +K+ + + S
Sbjct: 34 NVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALL 93
Query: 63 ADLAEEGNFDEPIRGCTGVFHLATPMDFESK--DPENEVIRPTINGMVSIMRACKNAKTV 120
A L +E ++ VFHLAT +S DP + T+ + + K+ K +
Sbjct: 94 ASLQDEYDY---------VFHLATYHGNQSSIHDPLADHENNTLT-TLKLYERLKHFKRL 143
Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
+++V+ S+AG E+ +D+ ++ + S+ Y +SK E + + ++
Sbjct: 144 KKVVY-SAAGCSIAEK----TFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQ 198
Query: 181 NNIDFISII------PSLVVGPFLTSSMPPSLITALSP--ITRNEAHYPI------IKQG 226
+ + + P ++G P ++ ++P I + P+ +
Sbjct: 199 HQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATR 258
Query: 227 QFVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKYPEFNVPTEFEDV-- 283
F+ ++D+ + I G Y I S +I +LA + E TE + +
Sbjct: 259 DFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGN---NTELDRLPK 315
Query: 284 ---DENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRA 321
D + K K +LGF S+DD ++ +A
Sbjct: 316 RPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKA 356
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 106/273 (38%), Gaps = 41/273 (15%)
Query: 10 VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
+TG +GF+G +L L E+ V T R+ + K LP ++ + D+ +
Sbjct: 17 ITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAK--------LP----NVEMISLDIMDSQ 64
Query: 70 NFDEPIRGCTG--VFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
+ I +FHLA +S + + G + ++ A +++ R++
Sbjct: 65 RVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTI 124
Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
S+ EE+ + +E+ S+ + +R + Y VSK A ++ + +D I
Sbjct: 125 GSS-----EEYGMILPEESPVSEENQLRPMS----PYGVSKASVGMLARQYVKAYGMDII 175
Query: 187 SIIPSLVVGP-----FLTSSMPPSLITALSPITRNEAHYPIIKQGQ------FVHLDDLC 235
+GP F+T ++ E PIIK G F + D+
Sbjct: 176 HTRTFNHIGPGQSLGFVTQDFAKQIVD-----IEMEKQEPIIKVGNLEAVRDFTDVRDIV 230
Query: 236 SAHIFLFEHPNAKGRY-ICSSHPATILELAKFL 267
A+ L ++ Y +CS I ++ L
Sbjct: 231 QAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLL 263
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRAT 35
V VTGA+G +GS + L +RGY V A+
Sbjct: 153 VLVTGATGGVGSLAVSXLAKRGYTVEAS 180
>pdb|2XE1|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
Length = 354
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISII 189
G+ D + VYD TSW+D+ + G + S +Q FA N DF ++
Sbjct: 86 GSFDYGRNYGVVYDVTSWTDV-----LPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGLV 140
Query: 190 PSL 192
L
Sbjct: 141 DGL 143
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAV 32
V VTG +GFIGS ++ LL RG V
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEV 27
>pdb|2XE3|A Chain A, Ompc28
pdb|2XE3|B Chain B, Ompc28
Length = 343
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISII 189
G+ D + VYD TSW+D+ + G + S +Q FA N DF ++
Sbjct: 86 GSFDYGRNYGVVYDVTSWTDV-----LPEFGGDTYDSDNFMQQRGNGFATYRNTDFFGLV 140
Query: 190 PSL 192
L
Sbjct: 141 DGL 143
>pdb|2XE5|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|B Chain B, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|C Chain C, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|D Chain D, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|E Chain E, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
pdb|2XE5|F Chain F, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance (Ompc26)
Length = 343
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISII 189
G+ D + VYD TSW+D+ + G + S +Q FA N DF ++
Sbjct: 86 GSFDYGRNYGVVYDVTSWTDV-----LPEFGGDTYDSDNFMQQRGNGFATYRNTDFFGLV 140
Query: 190 PSL 192
L
Sbjct: 141 DGL 143
>pdb|2XE2|A Chain A, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
pdb|2XE2|B Chain B, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
pdb|2XE2|C Chain C, Molecular Insights Into Clinically Isolated Ompc20 Mutants
And Their Role In Multi-Drug Resistance
Length = 343
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISII 189
G+ D + VYD TSW+D+ + G + S +Q FA N DF ++
Sbjct: 86 GSFDYGRNYGVVYDVTSWTDV-----LPEFGGDTYDSDNFMQQRGNGFATYRNTDFFGLV 140
Query: 190 PSL 192
L
Sbjct: 141 DGL 143
>pdb|2XG6|A Chain A, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|B Chain B, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|C Chain C, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|D Chain D, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|E Chain E, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
pdb|2XG6|F Chain F, Molecular Insights Into Clinically Isolated Ompc Mutants
And Their Role In Multi-Drug Resistance
Length = 343
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISII 189
G+ D + VYD TSW+D+ + G + S +Q FA N DF ++
Sbjct: 86 GSFDYGRNYGVVYDVTSWTDV-----LPEFGGDTYDSDNFMQQHGNGFATYRNTDFFGLV 140
Query: 190 PSL 192
L
Sbjct: 141 DGL 143
>pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon
Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp
Length = 235
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKAST----HLTLW 61
+ +TGAS IG + L GYA+ R D +K+ H L + HL +
Sbjct: 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVS 62
Query: 62 KADLAEE 68
KA+ EE
Sbjct: 63 KAESVEE 69
>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
pdb|3TN7|B Chain B, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
Length = 257
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKAST----HLTLW 61
+ +TGAS IG + L GYA+ R D +K+ H L + HL +
Sbjct: 25 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVS 84
Query: 62 KADLAEE 68
KA+ EE
Sbjct: 85 KAESVEE 91
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 254 SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFT 313
+SH A + EL + L++ + E N EF D+ E+++++ +S+++ D ++F + D
Sbjct: 385 NSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVD-PYEFAHETTDKLE 443
Query: 314 GAV 316
V
Sbjct: 444 DDV 446
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 236 SAHIFLFEHPNAKGRYICSSHPATILELAKF-LREKYPEFNVPTEFEDVDENMKNMLFSS 294
+A F+ ++P+AK R++C+SH + +L LRE V + ++V ++ ++ +
Sbjct: 205 AAARFISKYPDAKVRFLCNSHHESKFDLHSIALREL-----VASGVDNVFTHLNKIMINR 259
Query: 295 KKLTDLGFKFKYSLDDMFTG-----AVDTCRAKG 323
LTD Y+ D+ C A+G
Sbjct: 260 TVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEG 293
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 260
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVR------DPD 40
+ V +TGAS IG+ L+ +R Y V AT R DPD
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPD 69
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHL 48
+TG +G GS+L LL +GY V +R N +++ H+
Sbjct: 31 ALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHI 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,166,797
Number of Sequences: 62578
Number of extensions: 413033
Number of successful extensions: 1216
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 99
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)