BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040254
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 129/462 (27%), Positives = 203/462 (43%), Gaps = 35/462 (7%)
Query: 44 LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWN 102
L S+G+ + + LN+S N + P ++ L LE++DLS NS+SG + G + S
Sbjct: 116 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
++ L S N S V + C L+ +N +P + ++L+ +
Sbjct: 176 E----LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 228
Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSM 222
NKLSG S I T L +L + S + +G IP +G +P +
Sbjct: 229 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 286
Query: 223 MN-CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF-LLTLTSCRLLTAL 280
C L L+L GN F G + + F S LE++ L N F+G + TL R L L
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 345
Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
L+ N+ G++P + L + +L + + NF PN QN L+
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLT------LDLSSNNFSGPILPNLCQNPK----NTLQE 395
Query: 341 VSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEF 400
+ L TG++P N ++G+IP G+L L L N + GE
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI 460
P+EL ++ L FN ++P L N T+ + I L+NN L+G I
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGL---SNCTNLNW---------ISLSNNRLTGEI 503
Query: 461 PAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
P G+L+ L +L L NN+F+G+IP ++ L LDL+ N
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 128/525 (24%), Positives = 194/525 (36%), Gaps = 162/525 (30%)
Query: 61 NHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS 120
N+ G LP+++ + L+++DLS+N SGEL + +L+ S+ LD S N+FS
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSG 379
Query: 121 --------------------------QVPPRLGNCSRLKSFQAGYSNL------------ 142
++PP L NCS L S ++ L
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 143 -LRSL-----------PDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKEL 190
LR L P ++ +LE L FN L+G I + + N T+L + L + L
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 191 IGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVL 250
G IP+ IG SG++P+ + +C +L L+L NLF G + A F
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-- 557
Query: 251 SQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKN-L 309
++ + N G + + + + A N LE Q I+ + L + +N
Sbjct: 558 ---QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ----GIRSEQLNRLSTRNPC 610
Query: 310 NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPXXXXXXXXXXXXXXXG 369
N+ + + +P +D N S F ++
Sbjct: 611 NI--TSRVYGGHTSPTFDNNG-SMMFLDMSY----------------------------- 638
Query: 370 NQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLF 429
N ++G IP G++P LF L N+ISG P E+ L+ L I
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI----------------- 681
Query: 430 PNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQIS 489
+ L++N L GRIP L L +DL NN
Sbjct: 682 -------------------LDLSSNKLDGRIPQAMSALTMLTEIDLSNN----------- 711
Query: 490 QLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFC 534
NL GPIP GQ TFPP+ F NP C
Sbjct: 712 ------------------NLSGPIPEMGQFETFPPAKFLNNPGLC 738
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 179/465 (38%), Gaps = 119/465 (25%)
Query: 58 LSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYND 117
LS++H++G ++ F L +DLS NSLSG +T L
Sbjct: 81 LSNSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTTLT--------------------- 117
Query: 118 FSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINL 177
LG+CS LK ++ +L+ P K+SG + L
Sbjct: 118 -------SLGSCSGLKFLNV--------------SSNTLDFPG----KVSGGLK-----L 147
Query: 178 TSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMN---CTNLKTLNLM 234
SL VL+L + + G+ +G SG+ S ++ C NL+ L++
Sbjct: 148 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 205
Query: 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPE 294
N F+ + S L+ +D+ N +G F +++C L L ++ NQ G IPP
Sbjct: 206 SNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP- 262
Query: 295 IIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPX 354
+ LKSL + +SLA + TG++P
Sbjct: 263 -LPLKSL-------------------------------------QYLSLAENKFTGEIPD 284
Query: 355 -XXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKE-LSRLQPLVI 412
GN G++P +FG+ L ALS NN SGE P + L +++ L +
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 413 EQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ--LKFL 470
FN +LP + T+ L++N+ SG I Q L
Sbjct: 345 LDLSFNEFSGELP-----------ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 471 NVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS 515
L L NN F G IP +S + L L HLS N L G IPS
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSL-----HLSFNYLSGTIPS 433
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 38 LVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIP 97
++ Y IG++ ++ LNL HN + G +P + L L I+DLS N L G + +
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 98 SLAWNHSFCSMRLLDFSYNDFSSQVP 123
+L + +D S N+ S +P
Sbjct: 699 ALTM------LTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 129/462 (27%), Positives = 203/462 (43%), Gaps = 35/462 (7%)
Query: 44 LPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWN 102
L S+G+ + + LN+S N + P ++ L LE++DLS NS+SG + G + S
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLH 162
++ L S N S V + C L+ +N +P + ++L+ +
Sbjct: 179 E----LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231
Query: 163 FNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSM 222
NKLSG S I T L +L + S + +G IP +G +P +
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289
Query: 223 MN-CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF-LLTLTSCRLLTAL 280
C L L+L GN F G + + F S LE++ L N F+G + TL R L L
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 281 RLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRA 340
L+ N+ G++P + L + +L + + NF PN QN L+
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLT------LDLSSNNFSGPILPNLCQNPK----NTLQE 398
Query: 341 VSLAGCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEF 400
+ L TG++P N ++G+IP G+L L L N + GE
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI 460
P+EL ++ L FN ++P L N T+ + I L+NN L+G I
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGL---SNCTNLNW---------ISLSNNRLTGEI 506
Query: 461 PAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502
P G+L+ L +L L NN+F+G+IP ++ L LDL+ N
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 128/525 (24%), Positives = 194/525 (36%), Gaps = 162/525 (30%)
Query: 61 NHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS 120
N+ G LP+++ + L+++DLS+N SGEL + +L+ S+ LD S N+FS
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSG 382
Query: 121 --------------------------QVPPRLGNCSRLKSFQAGYSNL------------ 142
++PP L NCS L S ++ L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 143 -LRSL-----------PDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKEL 190
LR L P ++ +LE L FN L+G I + + N T+L + L + L
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 191 IGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVL 250
G IP+ IG SG++P+ + +C +L L+L NLF G + A F
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-- 560
Query: 251 SQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKN-L 309
++ + N G + + + + A N LE Q I+ + L + +N
Sbjct: 561 ---QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ----GIRSEQLNRLSTRNPC 613
Query: 310 NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPXXXXXXXXXXXXXXXG 369
N+ + + +P +D N S F ++
Sbjct: 614 NI--TSRVYGGHTSPTFDNNG-SMMFLDMSY----------------------------- 641
Query: 370 NQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLF 429
N ++G IP G++P LF L N+ISG P E+ L+ L I
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI----------------- 684
Query: 430 PNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQIS 489
+ L++N L GRIP L L +DL NN
Sbjct: 685 -------------------LDLSSNKLDGRIPQAMSALTMLTEIDLSNN----------- 714
Query: 490 QLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFC 534
NL GPIP GQ TFPP+ F NP C
Sbjct: 715 ------------------NLSGPIPEMGQFETFPPAKFLNNPGLC 741
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 179/465 (38%), Gaps = 119/465 (25%)
Query: 58 LSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYND 117
LS++H++G ++ F L +DLS NSLSG +T L
Sbjct: 84 LSNSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTTLT--------------------- 120
Query: 118 FSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINL 177
LG+CS LK ++ +L+ P K+SG + L
Sbjct: 121 -------SLGSCSGLKFLNV--------------SSNTLDFPG----KVSGGLK-----L 150
Query: 178 TSLLVLELYSKELIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMN---CTNLKTLNLM 234
SL VL+L + + G+ +G SG+ S ++ C NL+ L++
Sbjct: 151 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208
Query: 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPE 294
N F+ + S L+ +D+ N +G F +++C L L ++ NQ G IPP
Sbjct: 209 SNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP- 265
Query: 295 IIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPX 354
+ LKSL + +SLA + TG++P
Sbjct: 266 -LPLKSL-------------------------------------QYLSLAENKFTGEIPD 287
Query: 355 -XXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKE-LSRLQPLVI 412
GN G++P +FG+ L ALS NN SGE P + L +++ L +
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 413 EQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ--LKFL 470
FN +LP + T+ L++N+ SG I Q L
Sbjct: 348 LDLSFNEFSGELP-----------ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 471 NVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS 515
L L NN F G IP +S + L L HLS N L G IPS
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSL-----HLSFNYLSGTIPS 436
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 38 LVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIP 97
++ Y IG++ ++ LNL HN + G +P + L L I+DLS N L G + +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 98 SLAWNHSFCSMRLLDFSYNDFSSQVP 123
+L + +D S N+ S +P
Sbjct: 702 ALTM------LTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 112/251 (44%), Gaps = 33/251 (13%)
Query: 285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLA 344
N L G IPP I KL L + L++T ++ A P++ + L + +
Sbjct: 87 NNLVGPIPPAIAKLTQL--------HYLYITHTNVSGAIPDFLSQ-----IKTLVTLDFS 133
Query: 345 GCQLTGQVPXXXXXXXXXXXXXXXGNQITGSIPGWFGNLPSLFY-FALSQNNISGEFPKE 403
L+G +P GN+I+G+IP +G+ LF +S+N ++G+ P
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 404 LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAE 463
+ L ++ ++ N + D ++N+ I LA NSL+ + +
Sbjct: 194 FANLNLAFVDLSR-NMLEGDASVLFGSDKNTQK------------IHLAKNSLAFDL-GK 239
Query: 464 TGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFP 523
G K LN LDL NN G++P ++QL L L+ +S NNL G IP GG L F
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN-----VSFNNLCGEIPQGGNLQRFD 294
Query: 524 PSSFEGNPEFC 534
S++ N C
Sbjct: 295 VSAYANNKCLC 305
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 28/216 (12%)
Query: 104 SFCSMRLLDFSY----NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEP 159
S ++ L+F Y N+ +PP + ++L ++N+ ++PD + +L
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 160 SLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGX-XXXXXXXXXXXXXXSGSL 218
+N LSG + I +L +L+ + + G+IP G +G +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 219 PSSMMNCTNLKTLNLMGNLFAGNLS-------------------AYNFSVL---SQLETI 256
P + N NL ++L N+ G+ S A++ + L +
Sbjct: 191 PPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
Query: 257 DLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIP 292
DL N G+ LT + L +L ++ N L G+IP
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 45 PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHS 104
P+I LT + +L ++H +V G +P + + L +D SYN+LSG L I SL
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLP---- 149
Query: 105 FCSMRLLDFSYNDFSSQVPPRLGNCSRL 132
++ + F N S +P G+ S+L
Sbjct: 150 --NLVGITFDGNRISGAIPDSYGSFSKL 175
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 25/233 (10%)
Query: 190 LIGSIPRDIGXXXXXXXXXXXXXXXSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSV 249
L+G IP I SG++P + L TL+ N +G L + S
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISS 147
Query: 250 LSQLETIDLYINMFTGSFLLTLTS-CRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKN 308
L L I N +G+ + S +L T++ ++ N+L G+IPP L N
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------N 198
Query: 309 LNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLT---GQVPXXXXXXXXXXXX 365
L + L+ N + D + + +N + + LA L G+V
Sbjct: 199 LAFVDLSRNMLEG-----DASVLFGSDKNTQKIHLAKNSLAFDLGKV----GLSKNLNGL 249
Query: 366 XXXGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPK--ELSRLQPLVIEQNK 416
N+I G++P L L +S NN+ GE P+ L R NK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Query: 39 VQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPS 98
+ +P I L+ + L LSHN + L + F F LE +D+S+N L
Sbjct: 64 ISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ--------- 113
Query: 99 LAWNHSFC---SMRLLDFSYNDFSS-QVPPRLGNCSRL 132
N S C S+R LD S+NDF V GN ++L
Sbjct: 114 ---NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 31/150 (20%)
Query: 404 LSRLQPLVIEQNKFN---------RNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIF---L 451
L RLQ L++++N +N L + SH Y+R +I L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 452 ANNSLSGRI----PAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507
++N L+G + P + + VLDL NN SIP ++ L L+ L+++ N L
Sbjct: 436 SSNMLTGSVFRCLPPK------VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS- 487
Query: 508 NLQGPIPSG--GQLHTFPPSSFEGNPEFCS 535
+P G +L + NP C+
Sbjct: 488 -----VPDGVFDRLTSLQYIWLHDNPWDCT 512
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 33/116 (28%)
Query: 50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMR 109
LT++++LNL+HN + LP F LT L +DLSYN L G+ L
Sbjct: 132 LTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL---------- 180
Query: 110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFN 164
++LK + Y N L+S+PD ++ SL+ LH N
Sbjct: 181 --------------------TQLKDLRL-YQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 43 HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102
LP+ G+ ++ LNL++N + +P N F +E + ++N L IP++
Sbjct: 345 KLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-----YIPNIFDA 398
Query: 103 HSFCSMRLLDFSYNDFSS 120
S +DFSYN+ S
Sbjct: 399 KSVSVXSAIDFSYNEIGS 416
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 449 IFLANNSLSGRIPAETGQ-LKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507
IFL N +S +PA + Q + L +L L +N AG + LT+LE+LDLS N
Sbjct: 36 IFLHGNRIS-YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN----- 89
Query: 508 NLQGPIPSGGQLHTFPPSSFEG 529
QL P++F G
Sbjct: 90 ---------AQLRVVDPTTFRG 102
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG 90
LTH+ LNLS N + G + F L LE++DLSYN +
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 451 LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
L NN ++ + LK L+ L L NN + P + L LERL LSKN L E
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 451 LANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSE 506
L NN ++ + LK L+ L L NN + P + L LERL LSKN L E
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC 106
I +L+ + L +SHN + L I+ F F LE +DLS+N L H
Sbjct: 41 ILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLVKISC---------HPTV 90
Query: 107 SMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRS 145
+++ LD S+N F + + GN S+LK ++L +S
Sbjct: 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYS 140
C +R+L F N F Q P G+ +K F AGY+
Sbjct: 79 CGLRILAFPCNQFGKQEP---GSNEEIKEFAAGYN 110
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110
L+L N + LP +FH LT L ++ L+ N L G+ L + ++ +
Sbjct: 37 ADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL---KNLETLWV 92
Query: 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA-ASLEEPSLHFNKLSGF 169
D V +L N + L+ + N L+SLP ++ + L SL +N+L
Sbjct: 93 TDNKLQALPIGVFDQLVNLAELRLDR----NQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
Query: 170 ISNDIINLTSLLVLELYSKEL 190
LTSL L LY+ +L
Sbjct: 149 PKGVFDKLTSLKELRLYNNQL 169
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 25/109 (22%)
Query: 217 SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSV--LSQLETIDL--------YINMFTGS 266
SLP+S+ N NLK+L + + LSA ++ L +LE +DL Y +F G
Sbjct: 197 SLPASIANLQNLKSLKIRNS----PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 267 F---LLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312
L L C L L L ++L +L+ L L GC NL+ L
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRL--------TQLEKLDLRGCVNLSRL 293
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 441 RIFGLRPTIFLANNSLSGRIPAET--GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLD 498
R L T L N++ GRI ++ G+L L L+L N G PN + ++ L
Sbjct: 25 RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84
Query: 499 LSKNHLSE 506
L +N + E
Sbjct: 85 LGENKIKE 92
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGY 139
++ C +R+L F N F Q P G+ +K F AGY
Sbjct: 78 YAECGLRILAFPCNQFGKQEP---GSNEEIKEFAAGY 111
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN 86
IG L + LN++HN +H F LT L +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN 86
IG L + LN++HN +H F LT L +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,426,097
Number of Sequences: 62578
Number of extensions: 619953
Number of successful extensions: 1463
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 206
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)