Query 040254
Match_columns 555
No_of_seqs 318 out of 3781
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.4E-52 5.1E-57 468.7 35.0 515 6-538 50-612 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-45 2.6E-50 414.6 30.2 448 27-505 118-584 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.4E-39 1.8E-43 306.9 8.1 394 28-504 53-451 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.6E-39 1.9E-43 306.9 7.2 376 107-539 79-458 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.2E-37 1.8E-41 281.0 -13.4 243 28-288 46-288 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 7.2E-35 1.6E-39 268.3 -10.3 437 26-505 67-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.5E-32 3.3E-37 266.0 -3.9 366 48-503 4-373 (1255)
8 KOG0618 Serine/threonine phosp 100.0 1.6E-30 3.4E-35 263.1 -2.4 440 20-532 14-488 (1081)
9 KOG0444 Cytoskeletal regulator 99.9 3.3E-30 7.1E-35 249.9 -3.5 394 32-515 12-409 (1255)
10 KOG0618 Serine/threonine phosp 99.9 4.1E-29 9E-34 252.9 -2.2 404 29-503 70-487 (1081)
11 KOG4237 Extracellular matrix p 99.9 2E-28 4.3E-33 225.6 -3.2 303 6-346 35-356 (498)
12 KOG4237 Extracellular matrix p 99.9 7.5E-27 1.6E-31 215.3 -1.9 372 107-505 68-477 (498)
13 PLN03210 Resistant to P. syrin 99.9 2.5E-22 5.4E-27 226.4 25.9 350 66-503 548-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 3.7E-21 8.1E-26 216.9 26.3 333 43-411 550-896 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 3.8E-19 8.3E-24 186.5 17.3 39 449-488 427-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 5E-19 1.1E-23 185.7 17.5 272 76-411 201-472 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-18 3E-23 170.8 1.8 106 80-191 2-121 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 1.8E-18 3.8E-23 170.0 2.4 159 55-215 2-178 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 5E-17 1.1E-21 171.8 12.6 53 449-505 372-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 2.7E-16 5.9E-21 166.3 14.6 244 156-481 180-428 (754)
21 KOG0617 Ras suppressor protein 99.6 9.4E-18 2E-22 137.9 -3.7 177 306-534 32-213 (264)
22 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.6E-22 135.9 -4.7 165 46-223 28-193 (264)
23 PLN03150 hypothetical protein; 99.2 4.3E-11 9.2E-16 126.6 8.5 120 385-545 419-540 (623)
24 KOG1909 Ran GTPase-activating 99.2 8.2E-12 1.8E-16 115.0 1.5 136 333-504 154-310 (382)
25 KOG1909 Ran GTPase-activating 99.1 4.9E-12 1.1E-16 116.5 -0.4 93 303-396 209-310 (382)
26 KOG3207 Beta-tubulin folding c 99.1 1.7E-11 3.7E-16 116.0 1.0 225 33-263 99-338 (505)
27 PF14580 LRR_9: Leucine-rich r 99.0 3E-10 6.4E-15 98.3 5.3 124 75-209 18-147 (175)
28 KOG1259 Nischarin, modulator o 99.0 1.4E-10 3E-15 104.7 1.9 129 333-505 281-412 (490)
29 KOG3207 Beta-tubulin folding c 99.0 1.6E-10 3.4E-15 109.6 1.7 189 45-239 140-339 (505)
30 KOG0532 Leucine-rich repeat (L 99.0 7.6E-11 1.7E-15 115.2 -0.8 53 448-502 215-270 (722)
31 PF14580 LRR_9: Leucine-rich r 98.9 4.5E-10 9.8E-15 97.2 3.3 104 155-263 20-125 (175)
32 KOG4658 Apoptotic ATPase [Sign 98.9 7.5E-10 1.6E-14 119.7 5.7 85 126-211 567-651 (889)
33 PLN03150 hypothetical protein; 98.9 2.6E-09 5.6E-14 113.1 8.2 109 361-505 419-528 (623)
34 KOG0532 Leucine-rich repeat (L 98.9 5.9E-11 1.3E-15 116.0 -4.1 128 335-505 120-247 (722)
35 KOG4658 Apoptotic ATPase [Sign 98.9 2.2E-09 4.7E-14 116.2 7.0 234 49-295 543-790 (889)
36 COG4886 Leucine-rich repeat (L 98.9 4.3E-09 9.3E-14 106.5 7.7 176 107-291 117-293 (394)
37 KOG1259 Nischarin, modulator o 98.8 4.4E-10 9.5E-15 101.4 -0.2 133 150-289 280-413 (490)
38 COG4886 Leucine-rich repeat (L 98.8 4.8E-09 1E-13 106.1 6.3 147 337-505 141-290 (394)
39 PF13855 LRR_8: Leucine rich r 98.8 3.7E-09 8.1E-14 75.1 3.8 61 336-396 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 5.4E-09 1.2E-13 74.2 3.2 61 51-118 1-61 (61)
41 KOG1859 Leucine-rich repeat pr 98.6 8.4E-10 1.8E-14 111.0 -6.6 127 107-239 165-292 (1096)
42 KOG0531 Protein phosphatase 1, 98.6 1.1E-08 2.4E-13 103.6 1.3 79 107-190 119-198 (414)
43 KOG0531 Protein phosphatase 1, 98.6 5.3E-09 1.2E-13 105.9 -1.3 129 334-505 184-318 (414)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.2E-09 2.6E-14 98.7 -7.8 181 77-262 186-374 (419)
45 KOG1859 Leucine-rich repeat pr 98.2 3.1E-08 6.7E-13 100.0 -7.2 59 336-397 164-222 (1096)
46 COG5238 RNA1 Ran GTPase-activa 98.2 1.6E-07 3.5E-12 84.0 -2.5 209 173-397 87-316 (388)
47 KOG2120 SCF ubiquitin ligase, 98.1 5.1E-08 1.1E-12 88.3 -6.5 182 203-395 186-374 (419)
48 PF12799 LRR_4: Leucine Rich r 98.1 2.2E-06 4.8E-11 55.5 2.7 37 468-505 1-37 (44)
49 KOG4579 Leucine-rich repeat (L 98.1 5.3E-07 1.2E-11 72.3 -0.8 72 338-411 55-126 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.0 8.5E-07 1.8E-11 79.5 -0.1 203 75-290 29-257 (388)
51 KOG2982 Uncharacterized conser 98.0 1.6E-06 3.4E-11 78.9 1.1 58 333-390 221-285 (418)
52 KOG2982 Uncharacterized conser 97.9 2.6E-06 5.6E-11 77.5 0.2 15 75-89 70-84 (418)
53 KOG3665 ZYG-1-like serine/thre 97.8 9.5E-06 2.1E-10 86.1 3.2 183 26-216 59-264 (699)
54 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6E-10 50.4 3.5 36 361-397 2-37 (44)
55 PRK15386 type III secretion pr 97.6 0.00041 9E-09 68.0 10.9 32 202-236 156-187 (426)
56 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 63.2 5.9 103 107-211 43-149 (233)
57 KOG4579 Leucine-rich repeat (L 97.6 6.1E-06 1.3E-10 66.3 -1.8 105 361-505 28-136 (177)
58 PF13306 LRR_5: Leucine rich r 97.6 0.00014 3E-09 60.5 6.2 84 45-138 6-89 (129)
59 PF13306 LRR_5: Leucine rich r 97.6 0.00014 3.1E-09 60.5 6.2 127 66-204 2-128 (129)
60 KOG1644 U2-associated snRNP A' 97.5 0.00014 3.1E-09 62.7 5.3 105 52-165 43-151 (233)
61 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.3E-10 82.0 0.9 207 47-257 56-281 (699)
62 PRK15386 type III secretion pr 97.5 0.00046 1E-08 67.7 8.4 137 46-213 47-188 (426)
63 KOG4341 F-box protein containi 97.4 4.7E-06 1E-10 79.4 -5.6 64 333-396 369-438 (483)
64 KOG2739 Leucine-rich acidic nu 96.7 0.00066 1.4E-08 61.3 1.3 113 43-162 35-151 (260)
65 KOG2123 Uncharacterized conser 96.6 0.00012 2.5E-09 66.4 -3.8 100 50-160 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.6 0.0015 3.3E-08 59.0 2.8 109 71-187 38-152 (260)
67 KOG4341 F-box protein containi 96.5 0.00016 3.4E-09 69.3 -3.9 255 49-317 162-436 (483)
68 KOG1947 Leucine rich repeat pr 95.8 0.0016 3.5E-08 67.8 -1.1 115 50-166 187-307 (482)
69 KOG2123 Uncharacterized conser 95.8 0.00053 1.1E-08 62.3 -4.2 36 104-141 39-74 (388)
70 KOG4308 LRR-containing protein 95.6 0.00013 2.8E-09 74.2 -9.8 135 336-505 144-303 (478)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0057 1.2E-07 32.8 0.8 21 469-490 1-21 (22)
72 KOG1947 Leucine rich repeat pr 95.0 0.0047 1E-07 64.3 -0.9 169 45-228 208-389 (482)
73 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.6E-07 30.9 0.9 18 386-404 2-19 (22)
74 smart00369 LRR_TYP Leucine-ric 93.9 0.057 1.2E-06 30.2 2.3 23 50-73 1-23 (26)
75 smart00370 LRR Leucine-rich re 93.9 0.057 1.2E-06 30.2 2.3 23 50-73 1-23 (26)
76 PF13504 LRR_7: Leucine rich r 93.3 0.04 8.6E-07 27.3 0.8 13 469-481 2-14 (17)
77 smart00369 LRR_TYP Leucine-ric 90.8 0.19 4E-06 28.1 1.8 14 468-481 2-15 (26)
78 smart00370 LRR Leucine-rich re 90.8 0.19 4E-06 28.1 1.8 14 468-481 2-15 (26)
79 KOG4308 LRR-containing protein 90.2 0.0023 5.1E-08 65.2 -11.2 46 460-505 396-445 (478)
80 KOG0473 Leucine-rich repeat pr 89.7 0.015 3.4E-07 51.6 -4.9 46 459-505 79-124 (326)
81 PF13516 LRR_6: Leucine Rich r 88.9 0.12 2.7E-06 28.2 0.0 19 468-486 2-20 (24)
82 KOG0473 Leucine-rich repeat pr 88.7 0.021 4.6E-07 50.8 -4.9 91 354-483 36-126 (326)
83 KOG4242 Predicted myosin-I-bin 87.6 3.6 7.7E-05 41.1 8.9 110 104-215 163-281 (553)
84 KOG3864 Uncharacterized conser 86.6 0.14 3E-06 44.8 -1.0 36 334-369 149-185 (221)
85 KOG3864 Uncharacterized conser 83.4 0.17 3.8E-06 44.2 -1.8 79 107-185 102-183 (221)
86 smart00365 LRR_SD22 Leucine-ri 82.0 1.2 2.6E-05 24.9 1.8 15 491-505 1-15 (26)
87 smart00364 LRR_BAC Leucine-ric 78.6 1.2 2.7E-05 24.7 1.1 13 469-481 3-15 (26)
88 KOG3763 mRNA export factor TAP 76.4 1.2 2.5E-05 45.4 1.0 67 49-120 216-284 (585)
89 smart00368 LRR_RI Leucine rich 75.1 2.4 5.3E-05 24.1 1.7 14 492-505 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 61.8 50 0.0011 33.5 8.6 61 337-397 414-481 (553)
91 KOG3763 mRNA export factor TAP 59.7 4.6 9.9E-05 41.3 1.3 37 307-346 218-254 (585)
92 TIGR00864 PCC polycystin catio 43.3 25 0.00053 43.7 3.9 31 451-481 2-32 (2740)
93 smart00367 LRR_CC Leucine-rich 37.1 23 0.0005 19.5 1.3 15 383-397 1-16 (26)
94 TIGR00864 PCC polycystin catio 29.1 39 0.00084 42.2 2.6 32 57-89 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-52 Score=468.68 Aligned_cols=515 Identities=30% Similarity=0.421 Sum_probs=356.9
Q ss_pred CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccC
Q 040254 6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSY 85 (555)
Q Consensus 6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 85 (555)
-|+....+|.|.+..|... ..++.++++.+.+++.++..|..+++|++|+|++|.+.+.+|...|..+++|++|+|++
T Consensus 50 ~w~~~~~~c~w~gv~c~~~--~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~ 127 (968)
T PLN00113 50 NWNSSADVCLWQGITCNNS--SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127 (968)
T ss_pred CCCCCCCCCcCcceecCCC--CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcC
Confidence 3555557899998888753 36888999999999999999999999999999999999899999998899999999999
Q ss_pred CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc
Q 040254 86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK 165 (555)
Q Consensus 86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 165 (555)
|++++..|.. .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 128 n~l~~~~p~~--------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 128 NNFTGSIPRG--------SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred CccccccCcc--------ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 9998765531 34588888888888887788888888888888888888888888888888888888888888
Q ss_pred CcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcc
Q 040254 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAY 245 (555)
Q Consensus 166 i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 245 (555)
+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++ .
T Consensus 200 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~ 278 (968)
T PLN00113 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-P 278 (968)
T ss_pred CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-h
Confidence 887778888888888888888888887888888888888888888888877777788888888888888887775555 4
Q ss_pred cccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccc----------------cccCCCCC
Q 040254 246 NFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL----------------ILMGCKNL 309 (555)
Q Consensus 246 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l----------------~~~~~~~L 309 (555)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+..+ .+..+++|
T Consensus 279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 56677788888888887777777777777778888887777776666555433321 12223455
Q ss_pred cEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEE
Q 040254 310 NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYF 389 (555)
Q Consensus 310 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 389 (555)
+.+++++|.+.+..+..+ ...++|+.|++++|.+.+..|.++..+++|+.|++++|++++..|..+..+++|+.|
T Consensus 359 ~~L~Ls~n~l~~~~p~~~-----~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGL-----CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred cEEECCCCeeEeeCChhH-----hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 556665555554433322 233445555555555554555555555555555555555555555555555555555
Q ss_pred EccCccCccccch---hhhccccchhhhccCCCCCCCCCccccCCCccccccccccc----------CCCCEEEccCccc
Q 040254 390 ALSQNNISGEFPK---ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF----------GLRPTIFLANNSL 456 (555)
Q Consensus 390 ~L~~n~l~~~~~~---~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~l~L~~n~l 456 (555)
++++|.+++.++. .+.+|+.|++.+|.+....+.. .....++.+++..+.+. .....|++++|.+
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS--FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc--cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence 5555555544443 2334444445444432211100 00111222222211111 1123566666666
Q ss_pred cccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC-------------------CCcceecCCCCC
Q 040254 457 SGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS-------------------ENNLQGPIPSGG 517 (555)
Q Consensus 457 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-------------------~~~l~~~ip~~~ 517 (555)
++.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|||++|+++ +|.+.|.+|...
T Consensus 512 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc
Confidence 6666666666666666666666666666666666666666666666665 355679999988
Q ss_pred CCCCCCCCccCCCcCCCCccc
Q 040254 518 QLHTFPPSSFEGNPEFCSDIA 538 (555)
Q Consensus 518 ~~~~l~~~~~~gNp~~c~~~~ 538 (555)
.+.++....+.|||.+|+.+.
T Consensus 592 ~~~~~~~~~~~~n~~lc~~~~ 612 (968)
T PLN00113 592 AFLAINASAVAGNIDLCGGDT 612 (968)
T ss_pred hhcccChhhhcCCccccCCcc
Confidence 888999999999999998653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-45 Score=414.58 Aligned_cols=448 Identities=29% Similarity=0.459 Sum_probs=363.3
Q ss_pred eeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCC
Q 040254 27 FNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC 106 (555)
Q Consensus 27 ~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 106 (555)
..+..+++++|.+++.+|. ..+++|++|+|++|.+.+.+|. .+..+++|++|++++|.+.+..|..+.. ++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~------l~ 188 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTN------LT 188 (968)
T ss_pred CCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhh------Cc
Confidence 4667788888888888775 4578888899988888766664 4777888899999888888776666543 44
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
+|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 88888888888887788888888888888888888888888888888888888888888887778888888888888888
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 266 (555)
+|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCc
Confidence 888887888888888888888888888887788888888888888888888876555 4677788888888888888777
Q ss_pred ccccccCCCCCcEEEcccceecccCChhhhhcccc----------------cccCCCCCcEEEeccccCCCCCCcccccc
Q 040254 267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL----------------ILMGCKNLNVLFLTMNFMNEATPNYDQNK 330 (555)
Q Consensus 267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l----------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 330 (555)
.+..+..+++|+.|++++|++.+.+|..+..+..+ .+..+++|+.+++++|.+++..+..+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--- 424 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--- 424 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH---
Confidence 77777888888888888888877777666543322 24457789999999999887666544
Q ss_pred ccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhh---cc
Q 040254 331 ISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELS---RL 407 (555)
Q Consensus 331 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l 407 (555)
..++.|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+. .+
T Consensus 425 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 425 --TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred --hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc
Confidence 678899999999999998888888899999999999999988887765 468999999999999988886654 56
Q ss_pred ccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchh
Q 040254 408 QPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQ 487 (555)
Q Consensus 408 ~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 487 (555)
+.|++++|.+....+. .... ....+.|++++|.+++.+|..+..+++|++|+|++|++++.+|..
T Consensus 502 ~~L~Ls~N~l~~~~p~--------------~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 502 MQLKLSENKLSGEIPD--------------ELSS-CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred CEEECcCCcceeeCCh--------------HHcC-ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 6677777766432210 0001 122347999999999999999999999999999999999999999
Q ss_pred hhCCccCCeeeCCCCCCC
Q 040254 488 ISQLTILERLDLSKNHLS 505 (555)
Q Consensus 488 l~~l~~L~~L~Ls~N~l~ 505 (555)
+..+++|+.|++++|+++
T Consensus 567 l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 567 LGNVESLVQVNISHNHLH 584 (968)
T ss_pred HhcCcccCEEeccCCcce
Confidence 999999999999999998
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-39 Score=306.94 Aligned_cols=394 Identities=23% Similarity=0.238 Sum_probs=276.9
Q ss_pred eeeeccCCCCCccccCCccccCC--CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254 28 NILMQPAMNKLVQRYHLPSIGNL--THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105 (555)
Q Consensus 28 ~~~~~~~~~~~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 105 (555)
.+..++.+.+.+...-...+..+ +..+.|++++|+++ ++....|.++++|+.+.+.+|.++.+ |.+. +..
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~I-----P~f~--~~s 124 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRI-----PRFG--HES 124 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhc-----cccc--ccc
Confidence 34444555444443322222211 24566888888887 77777788888888888888877732 2222 123
Q ss_pred CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL 185 (555)
Q Consensus 106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (555)
.+|+.|+|.+|.|.+.-.+.+..++.|++|||+.|.+...-...|..-.++++|++++|+|+.+..+.|..+.+|..|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 36888888888777666667777778888888776665544445666677777777777777777777777777777777
Q ss_pred ccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254 186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
+.|+++...+..|..+++|+.|+|..|.+.-.-...|..+++|+.|.+..|.+. .+....|-++.++++|++..|.++.
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhh
Confidence 777777666666777777777777777776332445677777777777777776 5666667777777777777777776
Q ss_pred cccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccC
Q 040254 266 SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG 345 (555)
Q Consensus 266 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 345 (555)
...+++.++..|+.|++++|.|...-+ +.. ...++|+.|+++.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~--------------------------------d~W-----sftqkL~~LdLs~ 326 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHI--------------------------------DSW-----SFTQKLKELDLSS 326 (873)
T ss_pred hhcccccccchhhhhccchhhhheeec--------------------------------chh-----hhcccceeEeccc
Confidence 666666667777777777776552222 211 4456788888888
Q ss_pred cccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccc---hhhhccccchhhhccCCCCCC
Q 040254 346 CQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP---KELSRLQPLVIEQNKFNRNKP 422 (555)
Q Consensus 346 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~~~~~~~~~~~ 422 (555)
|+++...+..|..+..|++|+|++|+++....++|..+.+|++|||++|.++..+- ..|..|..|+
T Consensus 327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr----------- 395 (873)
T KOG4194|consen 327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR----------- 395 (873)
T ss_pred cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh-----------
Confidence 88887777888888888888888888887777788888888888888888875433 2344555555
Q ss_pred CCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCC
Q 040254 423 DLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKN 502 (555)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 502 (555)
.|++.+|++..+...+|.+++.|+.|||.+|.|.++-|+.|.++ .|++|-+..-
T Consensus 396 -------------------------kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 396 -------------------------KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred -------------------------heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 48888888887667788889999999999999988888888887 8888877654
Q ss_pred CC
Q 040254 503 HL 504 (555)
Q Consensus 503 ~l 504 (555)
.+
T Consensus 450 sf 451 (873)
T KOG4194|consen 450 SF 451 (873)
T ss_pred ce
Confidence 43
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-39 Score=306.87 Aligned_cols=376 Identities=24% Similarity=0.219 Sum_probs=288.9
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
.-+.|++++|++..+.+..|.++++|+.+++..|. ...+|.......+|+.|++.+|.|+.+..+.+..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 45667777777776666777777777777777554 34556544445567777777777777777777777777777777
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 266 (555)
.|.+....-..|..-.++++|+|++|.++..-...|..+.+|.+|.++.|+++ .+|...|+.++.|+.|++..|++...
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeee
Confidence 77776555555666677777788777777665666777777777788877777 67777777777888888877777654
Q ss_pred ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254 267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346 (555)
Q Consensus 267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 346 (555)
..-.|.++++|+.|.+..|.+. +++.-.|.+|.+++.++++.|++........ -++..|+.|+++.|
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~--------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l-----fgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS--------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWL-----FGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc--------cccCcceeeecccceeecccchhhhhhcccc-----cccchhhhhccchh
Confidence 4556777778888888777665 5555567777788888888888777665544 67889999999999
Q ss_pred ccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCc
Q 040254 347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPF 426 (555)
Q Consensus 347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~ 426 (555)
.|..+-++.+..+++|++|+|++|+++...+++|..+..|++|.|++|.+...-...|..++.|+
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~--------------- 368 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH--------------- 368 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh---------------
Confidence 99888888889999999999999999988889999999999999999999866666777777777
Q ss_pred cccCCCcccccccccccCCCCEEEccCccccccCCh---hccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCC
Q 040254 427 FLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA---ETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNH 503 (555)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 503 (555)
+|||++|.++..+.+ .|.++++|+.|++.+|+|..+....|..++.|+.|||.+|.
T Consensus 369 ---------------------~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 369 ---------------------KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ---------------------hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 589999999877654 48899999999999999997777789999999999999999
Q ss_pred CCCCcceecCCCC-CCCCCCCCCccCCCcCCCCcccC
Q 040254 504 LSENNLQGPIPSG-GQLHTFPPSSFEGNPEFCSDIAN 539 (555)
Q Consensus 504 l~~~~l~~~ip~~-~~~~~l~~~~~~gNp~~c~~~~~ 539 (555)
|. ..-|.. ..+ .+..+-+..-.++||+.+.
T Consensus 428 ia-----SIq~nAFe~m-~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 428 IA-----SIQPNAFEPM-ELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred ce-----eecccccccc-hhhhhhhcccceEEeccHH
Confidence 97 222221 112 4566666666689987653
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.2e-37 Score=281.02 Aligned_cols=243 Identities=28% Similarity=0.370 Sum_probs=142.3
Q ss_pred eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254 28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS 107 (555)
Q Consensus 28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 107 (555)
+...+.+++|.++...+ .+.++..+.+|++++|++. .+|+.+ ..+..++.++.++|++. ..|..+..+ ..
T Consensus 46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~------~~ 115 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSL------IS 115 (565)
T ss_pred chhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhh------hh
Confidence 44555666666665443 4666667777777777766 566543 33666677777777666 233333332 26
Q ss_pred ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254 108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS 187 (555)
Q Consensus 108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (555)
|+.++.++|.+. .+++.++.+..+..++..+|++. .+|.++..+.++..+++.+|+++...+..+. ++.|++||...
T Consensus 116 l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence 666666666666 35666666666666666654433 4555666666666666666666655444444 66666666655
Q ss_pred CccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccc
Q 040254 188 KELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF 267 (555)
Q Consensus 188 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 267 (555)
|-+. .+|..++.+.+|..|++..|++. .+| .|..+..|+++++..|.+. .++....+.+.++..|++.+|+++. .
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~ 267 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-V 267 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-C
Confidence 5543 45555666666666666666665 444 4555566666666666554 4554445555666666666666553 3
Q ss_pred cccccCCCCCcEEEcccceec
Q 040254 268 LLTLTSCRLLTALRLACNQLE 288 (555)
Q Consensus 268 ~~~l~~~~~L~~L~l~~n~~~ 288 (555)
|..+.-+++|++||++.|.++
T Consensus 268 Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred chHHHHhhhhhhhcccCCccc
Confidence 444455555666666666555
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=7.2e-35 Score=268.27 Aligned_cols=437 Identities=24% Similarity=0.299 Sum_probs=307.6
Q ss_pred ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254 26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105 (555)
Q Consensus 26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 105 (555)
...++++++.+|.++ ..|++++++..++.++.++|+++ .+|..... ...|+.++.+.|.+.. .++.+..+.
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s-~~~l~~l~~s~n~~~e-l~~~i~~~~----- 137 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGS-LISLVKLDCSSNELKE-LPDSIGRLL----- 137 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhh-hhhhhhhhccccceee-cCchHHHHh-----
Confidence 356778888888876 45668999999999999999999 89986555 8999999999999884 444554444
Q ss_pred CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL 185 (555)
Q Consensus 106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (555)
.|+.++..+|++.+ .|+++.++.++..+++.+|.+....|..+. +++|++|+...|-++. .|..++.+.+|..|++
T Consensus 138 -~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 138 -DLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLET-LPPELGGLESLELLYL 213 (565)
T ss_pred -hhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhc-CChhhcchhhhHHHHh
Confidence 89999999999995 888999999999999998887665555444 9999999999998876 5677999999999999
Q ss_pred ccCccccCCCcCccCCCCCCeeeCccCcCcccCCc-cccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccc
Q 040254 186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPS-SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT 264 (555)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 264 (555)
..|++. ..| .|.++..|+.|+++.|.+. .+|. ..+++.++..|++..|++. +.| .....+.+|+.|++++|.++
T Consensus 214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P-de~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP-DEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc-hHHHHhhhhhhhcccCCccc
Confidence 999985 666 6899999999999999998 5554 4568999999999999998 677 46777899999999999998
Q ss_pred ccccccccCCCCCcEEEcccceecccCCh--------hhhhccc-----------------c--------cccCCCCCcE
Q 040254 265 GSFLLTLTSCRLLTALRLACNQLEGQIPP--------EIIKLKS-----------------L--------ILMGCKNLNV 311 (555)
Q Consensus 265 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--------~l~~l~~-----------------l--------~~~~~~~L~~ 311 (555)
+ .+..++.+ .|+.|-+.+|.+...-.+ .+..+.. . ........+.
T Consensus 289 ~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 289 S-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred c-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 5 45567888 899999999976521000 0000000 0 1112334667
Q ss_pred EEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCc-EEEccCCccccccCccccCCCCCcEEE
Q 040254 312 LFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLE-VLLLSGNQITGSIPGWFGNLPSLFYFA 390 (555)
Q Consensus 312 L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~ 390 (555)
|++++-.++..+...+.. +.-.-+..+++++|++. ++|..+..++.+. .+.+++|.++ .+|..+..+++|..|+
T Consensus 367 L~~s~~qlt~VPdEVfea---~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 367 LDVSDKQLTLVPDEVFEA---AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLD 441 (565)
T ss_pred hcccccccccCCHHHHHH---hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeee
Confidence 777777777666554411 11122677888888887 5666665555443 3445555554 6666677777777777
Q ss_pred ccCccCccccchhhhccccc---hhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCC
Q 040254 391 LSQNNISGEFPKELSRLQPL---VIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQL 467 (555)
Q Consensus 391 L~~n~l~~~~~~~~~~l~~L---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l 467 (555)
|++|.+. .+|..+..+..| +++.|.|...+. +.+. ....+.+-.++|++....+..+.+|
T Consensus 442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~----~~y~------------lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPE----CLYE------------LQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred cccchhh-hcchhhhhhhhhheecccccccccchH----HHhh------------HHHHHHHHhccccccccChHHhhhh
Confidence 7777766 556555444433 333333222111 0000 0000123344466664445557777
Q ss_pred CCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 468 KFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 468 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
.+|++|||.+|.+. .+|..++++.+|+.|++++|+|+
T Consensus 505 ~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77777777777777 67777777777777777777775
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-32 Score=266.01 Aligned_cols=366 Identities=25% Similarity=0.352 Sum_probs=250.0
Q ss_pred cCCCCCCEEEccCCcCcC-cCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254 48 GNLTHISHLNLSHNHVHG-PLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL 126 (555)
Q Consensus 48 ~~l~~L~~L~L~~n~~~~-~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 126 (555)
+-++-+|-+|+++|.++| ..|.+ ...++.++-|.|...++. ..|+.+..++ +|++|.+++|++.. +-..+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~-~vPeEL~~lq------kLEHLs~~HN~L~~-vhGEL 74 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLE-QVPEELSRLQ------KLEHLSMAHNQLIS-VHGEL 74 (1255)
T ss_pred cccceeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhh-hChHHHHHHh------hhhhhhhhhhhhHh-hhhhh
Confidence 345667778888888874 45543 455888888888887776 3445555444 78888888888774 45557
Q ss_pred cCCCCCcEEEccCCCCC-CCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254 127 GNCSRLKSFQAGYSNLL-RSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK 205 (555)
Q Consensus 127 ~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 205 (555)
..++.|+.+.+..|++- .-+|..+.++..|+.||+++|+++. .|..+..-+++-.|+|++|.|.++....|.+++.|-
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 77888888888877653 4577788888888888888888876 466677778888888888888644444567788888
Q ss_pred eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccc-ccccccccCCCCCcEEEccc
Q 040254 206 YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT-GSFLLTLTSCRLLTALRLAC 284 (555)
Q Consensus 206 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~ 284 (555)
.|||++|++. .+|..+..+..|++|.+++|++. ......+..+++|+.|.+++.+-+ ...|..+..+.+|..++++.
T Consensus 154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 8888888887 66777788888888888888775 333334556667777777765433 23566667777777777777
Q ss_pred ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcE
Q 040254 285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEV 364 (555)
Q Consensus 285 n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 364 (555)
|.+. .+|+.+.+ .++|+.|++++|+|+ .+....+.-.+|++
T Consensus 232 N~Lp-~vPecly~-------------------------------------l~~LrrLNLS~N~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 232 NNLP-IVPECLYK-------------------------------------LRNLRRLNLSGNKIT-ELNMTEGEWENLET 272 (1255)
T ss_pred cCCC-cchHHHhh-------------------------------------hhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence 7665 45554443 344555555566555 23333334446666
Q ss_pred EEccCCccccccCccccCCCCCcEEEccCccCc-cccchhhhccccchhhhccCCCCCCCCCccccCCCccccccccccc
Q 040254 365 LLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF 443 (555)
Q Consensus 365 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 443 (555)
|+++.|+++ .+|.++..+++|+.|.+.+|+++ ..+|..++.|..|.+
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev------------------------------- 320 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV------------------------------- 320 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH-------------------------------
Confidence 666666666 66666666666666666666665 245556666555553
Q ss_pred CCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCC
Q 040254 444 GLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNH 503 (555)
Q Consensus 444 ~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 503 (555)
+..++|.+. .+|..++.|..|+.|.|++|++- ..|+.+.-++.|+.||++.|.
T Consensus 321 -----f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 321 -----FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -----HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 455555555 67777777777777777777776 677777777777777777775
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-30 Score=263.14 Aligned_cols=440 Identities=25% Similarity=0.291 Sum_probs=246.2
Q ss_pred eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccc
Q 040254 20 ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSL 99 (555)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 99 (555)
.+........+.+++..|.+...-.....+.-+|++|++++|.++ ..|..+- .+++|+.|.++.|-|...+ ....
T Consensus 14 p~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n~i~~vp-~s~~-- 88 (1081)
T KOG0618|consen 14 PEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRNYIRSVP-SSCS-- 88 (1081)
T ss_pred chhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhh-hHHHHhhcccchhhHhhCc-hhhh--
Confidence 334444445666666666665544445566677999999999887 7776543 4888999999998877433 2222
Q ss_pred cccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc---------------
Q 040254 100 AWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN--------------- 164 (555)
Q Consensus 100 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n--------------- 164 (555)
.+.+|++++|.+|.+. ..|..+..+.+|++|++++|.+. .+|..+..+..+.++..++|
T Consensus 89 ----~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~ 162 (1081)
T KOG0618|consen 89 ----NMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLD 162 (1081)
T ss_pred ----hhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhh
Confidence 5668999999988887 48888888999999999987654 45555555555555555554
Q ss_pred ----cCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254 165 ----KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240 (555)
Q Consensus 165 ----~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 240 (555)
.+....+.++..++. .|++++|.+. . ..+..+.+|+.+....|.+.... -.-++++.|+.++|.+..
T Consensus 163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTT 233 (1081)
T ss_pred hhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCccee
Confidence 333333333333333 4666666654 1 12445555666666555554211 123567777777777662
Q ss_pred ccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccc---------------cccC
Q 040254 241 NLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSL---------------ILMG 305 (555)
Q Consensus 241 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l---------------~~~~ 305 (555)
. .......+|+.++++.|.+.+.. +++..+++|+.+....|.+. .+|..+...+++ ...+
T Consensus 234 -~--~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~ 308 (1081)
T KOG0618|consen 234 -L--DVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEG 308 (1081)
T ss_pred -e--ccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccc
Confidence 1 12334567888888888887544 78888888888888888774 444443333222 1223
Q ss_pred CCCCcEEEeccccCCCCCCccccccccCCC-CCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCC
Q 040254 306 CKNLNVLFLTMNFMNEATPNYDQNKISDGF-QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP 384 (555)
Q Consensus 306 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 384 (555)
.+.|+.|++..|.+...+...+ ... .+++.|..+.+++.......=...+.|+.|.+.+|.+++.....+.+..
T Consensus 309 ~~sL~tLdL~~N~L~~lp~~~l-----~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLPSLPDNFL-----AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred cceeeeeeehhccccccchHHH-----hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 4456666666666655544221 101 1122223333322211100001123455555555555554444455555
Q ss_pred CCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc
Q 040254 385 SLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET 464 (555)
Q Consensus 385 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~ 464 (555)
.|+.|+|++|.+.......+.++..|. .|+||+|+++ .+|...
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~Le------------------------------------eL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELE------------------------------------ELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhH------------------------------------HHhcccchhh-hhhHHH
Confidence 555555555555522223334444443 3555555555 445555
Q ss_pred cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcC
Q 040254 465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPE 532 (555)
Q Consensus 465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~ 532 (555)
..++.|++|...+|+|. ..| .+.++++|+.+|+|.|+|+...+....|+ ..+..++++||+|
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~----p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS----PNLKYLDLSGNTR 488 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC----cccceeeccCCcc
Confidence 55555555555555555 444 45555555555555555554444444443 3455555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.3e-30 Score=249.89 Aligned_cols=394 Identities=24% Similarity=0.289 Sum_probs=311.2
Q ss_pred ccCCCCCcc-ccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccE
Q 040254 32 QPAMNKLVQ-RYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110 (555)
Q Consensus 32 ~~~~~~~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~ 110 (555)
.+++.|.++ +..|.+...+++++-|.|....+. .+|+. .+.+.+|++|.+++|++... -+.+. .++.||.
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~v-hGELs------~Lp~LRs 82 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLISV-HGELS------DLPRLRS 82 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHhh-hhhhc------cchhhHH
Confidence 357778888 667888999999999999999998 89986 55599999999999998843 23333 4569999
Q ss_pred EEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCc
Q 040254 111 LDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKE 189 (555)
Q Consensus 111 L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 189 (555)
+++.+|+++. -+|..+..+..|..|||++|++ ...|..+...+++-.|++++|+|..++...|.+++.|-.|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9999999975 5788888999999999998874 5678999999999999999999999888889999999999999999
Q ss_pred cccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc-cccCcccccCCCCCcEEEccccccccccc
Q 040254 190 LIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA-GNLSAYNFSVLSQLETIDLYINMFTGSFL 268 (555)
Q Consensus 190 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 268 (555)
+. .+|.....+..|+.|+|++|.+...--..+..+++|+.|++++.+-+ ..+| ..+.++.+|+.++++.|.+. ..|
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC-CchhhhhhhhhccccccCCC-cch
Confidence 85 66777889999999999999986433334556778889999886533 2455 56888999999999999987 578
Q ss_pred ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccc
Q 040254 269 LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQL 348 (555)
Q Consensus 269 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i 348 (555)
+++..+++|+.|++++|+++..... . +...+|++|+++.|++
T Consensus 239 ecly~l~~LrrLNLS~N~iteL~~~---------~-----------------------------~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITELNMT---------E-----------------------------GEWENLETLNLSRNQL 280 (1255)
T ss_pred HHHhhhhhhheeccCcCceeeeecc---------H-----------------------------HHHhhhhhhccccchh
Confidence 8899999999999999988721100 0 3356778888888888
Q ss_pred ccccchhhhCCCCCcEEEccCCcccc-ccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCcc
Q 040254 349 TGQVPLWLSKLTKLEVLLLSGNQITG-SIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFF 427 (555)
Q Consensus 349 ~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~ 427 (555)
+ .+|.+++.++.|+.|.+.+|+++- -+|.+++.+..|+++...+|.+. .+|+.++.+..|.
T Consensus 281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~---------------- 342 (1255)
T KOG0444|consen 281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ---------------- 342 (1255)
T ss_pred c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH----------------
Confidence 8 788888888999999988888873 47788888888999998888887 7888888777776
Q ss_pred ccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCC
Q 040254 428 LFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSEN 507 (555)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 507 (555)
.|.|+.|++- .+|.++.-++.|++||+..|.-.-..|.--..-++|+.-++..--=.+.
T Consensus 343 --------------------kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~Ql 401 (1255)
T KOG0444|consen 343 --------------------KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQL 401 (1255)
T ss_pred --------------------Hhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHH
Confidence 4778888877 6788888889999999999975523332212224565555543222233
Q ss_pred cceecCCC
Q 040254 508 NLQGPIPS 515 (555)
Q Consensus 508 ~l~~~ip~ 515 (555)
.+.|..|.
T Consensus 402 rlAG~~pa 409 (1255)
T KOG0444|consen 402 RLAGQMPA 409 (1255)
T ss_pred hhccCCcc
Confidence 56676664
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=4.1e-29 Score=252.91 Aligned_cols=404 Identities=26% Similarity=0.283 Sum_probs=293.5
Q ss_pred eeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCcccc--------
Q 040254 29 ILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLA-------- 100 (555)
Q Consensus 29 ~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~-------- 100 (555)
+..+.++.|-|. ..|.+..++.+|+++.|.+|.+. .+|.+ +..+.+|++||+|+|++...+. .+..+.
T Consensus 70 L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~-~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 70 LRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPAS-ISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAAS 145 (1081)
T ss_pred HhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchh-HHhhhcccccccchhccCCCch-hHHhhhHHHHHhhh
Confidence 455566656555 44577888889999999988887 77765 5668999999999998874332 221111
Q ss_pred ------ccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccc
Q 040254 101 ------WNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDI 174 (555)
Q Consensus 101 ------~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 174 (555)
.. .-..++.+++..|.+.+.++..+..+.+ .|+|++|.+.. ..+..+..|+.+....|+++.+ .
T Consensus 146 ~N~~~~~l-g~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l----~ 215 (1081)
T KOG0618|consen 146 NNEKIQRL-GQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSEL----E 215 (1081)
T ss_pred cchhhhhh-ccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceE----E
Confidence 00 0112455555555555444444554544 57777776551 2455667777777777776653 2
Q ss_pred cCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCc
Q 040254 175 INLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE 254 (555)
Q Consensus 175 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 254 (555)
..-++|+.|+.+.|.++...+.. .-.+|+++++++|.+. .+|+|+..+.+|+.+...+|.++ .++. ......+|+
T Consensus 216 ~~g~~l~~L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~-ri~~~~~L~ 290 (1081)
T KOG0618|consen 216 ISGPSLTALYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL-RISRITSLV 290 (1081)
T ss_pred ecCcchheeeeccCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH-HHhhhhhHH
Confidence 23477888999888887444322 2468999999999998 56799999999999999999996 6663 455678999
Q ss_pred EEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCC
Q 040254 255 TIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG 334 (555)
Q Consensus 255 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 334 (555)
.+.+..|.+... +....+...|++|++..|.+. ..|+.+..... ..++.++.+.|.+...+.... ..
T Consensus 291 ~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~------~~l~~ln~s~n~l~~lp~~~e-----~~ 357 (1081)
T KOG0618|consen 291 SLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLN------ASLNTLNVSSNKLSTLPSYEE-----NN 357 (1081)
T ss_pred HHHhhhhhhhhC-CCcccccceeeeeeehhcccc-ccchHHHhhhh------HHHHHHhhhhccccccccccc-----hh
Confidence 999999998854 445677899999999999988 55553332211 135666667776665552221 45
Q ss_pred CCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhh
Q 040254 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQ 414 (555)
Q Consensus 335 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~ 414 (555)
++.|+.|.+.+|.+++.....+.+.++|+.|+|++|++.......+.+++.|++|+||||+++ .+|....++..|+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~--- 433 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLH--- 433 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhH---
Confidence 677999999999999888888999999999999999999666667889999999999999998 7778877777776
Q ss_pred ccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccC
Q 040254 415 NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTIL 494 (555)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 494 (555)
+|...+|++. ..| .+.+++.|+++|+|.|.++...-......++|
T Consensus 434 ---------------------------------tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L 478 (1081)
T KOG0618|consen 434 ---------------------------------TLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL 478 (1081)
T ss_pred ---------------------------------HHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence 4777788887 667 78889999999999999885543333344789
Q ss_pred CeeeCCCCC
Q 040254 495 ERLDLSKNH 503 (555)
Q Consensus 495 ~~L~Ls~N~ 503 (555)
++||++||.
T Consensus 479 kyLdlSGN~ 487 (1081)
T KOG0618|consen 479 KYLDLSGNT 487 (1081)
T ss_pred ceeeccCCc
Confidence 999999998
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=2e-28 Score=225.63 Aligned_cols=303 Identities=20% Similarity=0.189 Sum_probs=210.7
Q ss_pred CCCCceEeccc---CcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEE
Q 040254 6 AAGGQIISCHT---EKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIID 82 (555)
Q Consensus 6 ~~~~~~~~c~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 82 (555)
.++++.|.|.. ..+.|+..| -..+|..+.. ....++|..|.|+ .||+.+|+.+++|+.||
T Consensus 35 ~~CP~pC~Cs~~~g~~VdCr~~G--------------L~eVP~~LP~--~tveirLdqN~I~-~iP~~aF~~l~~LRrLd 97 (498)
T KOG4237|consen 35 SACPAPCTCSDVEGGIVDCRGKG--------------LTEVPANLPP--ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLD 97 (498)
T ss_pred ccCCCCcccCCCCCceEEccCCC--------------cccCcccCCC--cceEEEeccCCcc-cCChhhccchhhhceec
Confidence 47778888887 667888776 4556666544 5677888899998 89999999999999999
Q ss_pred ccCCcCccccCCCCccccccCCCCCccEE-EccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEe
Q 040254 83 LSYNSLSGELTGLIPSLAWNHSFCSMRLL-DFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSL 161 (555)
Q Consensus 83 Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L-~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 161 (555)
||+|+|+.+.|+.|..+. .|-.| ..++|+|+...-.+|+++..|+.|.+.-|.+.......|..++.+..|.+
T Consensus 98 LS~N~Is~I~p~AF~GL~------~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 98 LSKNNISFIAPDAFKGLA------SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred ccccchhhcChHhhhhhH------hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence 999999988888887655 54444 44458888755577899999999999888888777888999999999999
Q ss_pred ecccCcccccccccCCCCCcEEEcccCccc------------cCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCC
Q 040254 162 HFNKLSGFISNDIINLTSLLVLELYSKELI------------GSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229 (555)
Q Consensus 162 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~------------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 229 (555)
..|.+..+....|..+..++.+.+..|... ...|..++......-..+.+.++....+..+... ++
T Consensus 172 yDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~e 249 (498)
T KOG4237|consen 172 YDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LE 249 (498)
T ss_pred cchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh--HH
Confidence 999998877778999999999988887732 2223334444455555555555543333322221 22
Q ss_pred EE---ECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCC
Q 040254 230 TL---NLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGC 306 (555)
Q Consensus 230 ~L---~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~ 306 (555)
.+ ....+...+..|...|..+++|+.|++++|+++++...+|.....+++|.+..|++. .+....|.+.
T Consensus 250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~--------~v~~~~f~~l 321 (498)
T KOG4237|consen 250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE--------FVSSGMFQGL 321 (498)
T ss_pred hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH--------HHHHHhhhcc
Confidence 22 122232334566677888899999999999988888888888888888888888776 2333334455
Q ss_pred CCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254 307 KNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346 (555)
Q Consensus 307 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 346 (555)
.+|+.|++++|+|+...+.++ ....+|.+|.+-.|
T Consensus 322 s~L~tL~L~~N~it~~~~~aF-----~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 322 SGLKTLSLYDNQITTVAPGAF-----QTLFSLSTLNLLSN 356 (498)
T ss_pred ccceeeeecCCeeEEEecccc-----cccceeeeeehccC
Confidence 555555555555555544443 44444555554444
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=7.5e-27 Score=215.28 Aligned_cols=372 Identities=23% Similarity=0.214 Sum_probs=245.9
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec-ccCcccccccccCCCCCcEEEc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF-NKLSGFISNDIINLTSLLVLEL 185 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L 185 (555)
.-..++|..|+|+.+.+.+|+.+++||+|||++|.+..+.|.+|.+++.+.+|.+.+ |+|+.+..+.|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567788888888877778888888888888888888888888888888887777666 8888888888888888888888
Q ss_pred ccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcccc--C---------cccccCCCCCc
Q 040254 186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNL--S---------AYNFSVLSQLE 254 (555)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~---------~~~~~~l~~L~ 254 (555)
..|++.....+.|..++++..|.+..|.+.......|..+..++++++..|++.+.- + ...+++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 888888777788888888888888888887444457888888888888888744211 1 01223333333
Q ss_pred EEEcccccccccccccccCCCCCcEE--Ecccce-ecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccc
Q 040254 255 TIDLYINMFTGSFLLTLTSCRLLTAL--RLACNQ-LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKI 331 (555)
Q Consensus 255 ~L~l~~n~~~~~~~~~l~~~~~L~~L--~l~~n~-~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 331 (555)
...+.+..+.......+... ++.+ .+.... ..+..| ...|.+.++|+++++++|.++.+...++
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP-------~~cf~~L~~L~~lnlsnN~i~~i~~~aF---- 294 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICP-------AKCFKKLPNLRKLNLSNNKITRIEDGAF---- 294 (498)
T ss_pred hHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcCh-------HHHHhhcccceEeccCCCccchhhhhhh----
Confidence 33344444433333222211 2211 111111 111112 2237778899999999999998887776
Q ss_pred cCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc-----cccchh---
Q 040254 332 SDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-----GEFPKE--- 403 (555)
Q Consensus 332 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~--- 403 (555)
.+...+++|.+..|++...-...|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|++. ..+.++
T Consensus 295 -e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 295 -EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred -cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 88889999999999998777788899999999999999999889999999999999999888764 111111
Q ss_pred -----------hhccccchhhhccCCCCCCCCCccccCCCccccccccccc----CCCCEEEccCccccccCChhccCCC
Q 040254 404 -----------LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF----GLRPTIFLANNSLSGRIPAETGQLK 468 (555)
Q Consensus 404 -----------~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~L~~n~l~~~~~~~~~~l~ 468 (555)
...++.+.+++..+......-+ +.......... .-..+..-.+|+....+|..+. .
T Consensus 374 ~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~-------ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~ 444 (498)
T KOG4237|consen 374 KSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGP-------EELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--V 444 (498)
T ss_pred CCCCCCCCCCCCchhccccchhccccccccCCc-------cccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--c
Confidence 2233344444444332221100 00000000000 0011233333443335554332 3
Q ss_pred CCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 469 FLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 469 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
..++|++.+|.++ .+|+. .+.+| .+|+++|+|+
T Consensus 445 d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 445 DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred hhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 4678888888888 66666 55677 8888888886
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.5e-22 Score=226.36 Aligned_cols=350 Identities=22% Similarity=0.210 Sum_probs=227.7
Q ss_pred cCchhHHhcCCCCCEEEccCCcCc------cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccC
Q 040254 66 PLPINSFHFLTLLEIIDLSYNSLS------GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGY 139 (555)
Q Consensus 66 ~i~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (555)
.+...+|.++++|+.|.+..+.+. ...|..+..+ ..+|+.|++.++.++. +|..+ ...+|+.|++.+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l-----p~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~ 620 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL-----PPKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQG 620 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhc-----CcccEEEEecCCCCCC-CCCcC-CccCCcEEECcC
Confidence 356677888999999888765432 1222222211 1368888888888774 66665 467888888887
Q ss_pred CCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCC
Q 040254 140 SNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLP 219 (555)
Q Consensus 140 ~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 219 (555)
+.+ ..++..+..+++|+.|+++++......| .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|
T Consensus 621 s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 621 SKL-EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccc-cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 664 4566667778888888888764333233 36777888888888877667777777888888888888765443555
Q ss_pred ccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcc
Q 040254 220 SSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLK 299 (555)
Q Consensus 220 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 299 (555)
..+ .+++|+.|++++|.....++. ...+|+.|++++|.+... +..+ .+++|++|.+..+... .+...+
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~-~l~~~~---- 766 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSE-KLWERV---- 766 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccc-cccc-cccccccccccccchh-hccccc----
Confidence 544 567788888887754433331 235677777777766532 2222 3455666655543211 000000
Q ss_pred cccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCcc
Q 040254 300 SLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGW 379 (555)
Q Consensus 300 ~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 379 (555)
....+. ....+++|+.|++++|.....+|.+++.+++|+.|++++|.....+|..
T Consensus 767 --------------------~~l~~~-----~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 767 --------------------QPLTPL-----MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred --------------------cccchh-----hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 000000 0133567888899888766678888889999999999988655466665
Q ss_pred ccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc
Q 040254 380 FGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR 459 (555)
Q Consensus 380 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~ 459 (555)
+ .+++|+.|++++|.....+|....+++ .|++++|.++ .
T Consensus 822 ~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~---------------------------------------~L~Ls~n~i~-~ 860 (1153)
T PLN03210 822 I-NLESLESLDLSGCSRLRTFPDISTNIS---------------------------------------DLNLSRTGIE-E 860 (1153)
T ss_pred C-CccccCEEECCCCCccccccccccccC---------------------------------------EeECCCCCCc-c
Confidence 5 688899999998865544443322222 4677777776 5
Q ss_pred CChhccCCCCCCeeeCCCc-cceeecchhhhCCccCCeeeCCCCC
Q 040254 460 IPAETGQLKFLNVLDLGNN-NFAGSIPNQISQLTILERLDLSKNH 503 (555)
Q Consensus 460 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~Ls~N~ 503 (555)
+|.++..+++|++|++++| .++ .+|..+..+++|+.+++++|.
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 7777788888888888874 454 566677777888888888774
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.7e-21 Score=216.87 Aligned_cols=333 Identities=19% Similarity=0.178 Sum_probs=241.2
Q ss_pred CCccccCCCCCCEEEccCCcC------cCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC
Q 040254 43 HLPSIGNLTHISHLNLSHNHV------HGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN 116 (555)
Q Consensus 43 ~~~~~~~l~~L~~L~L~~n~~------~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n 116 (555)
...+|..+++|+.|.+.++.. ...+|.++..-.++|+.|.+.++.+... |..+ ...+|++|+++++
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~f-------~~~~L~~L~L~~s 621 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSNF-------RPENLVKLQMQGS 621 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCcC-------CccCCcEEECcCc
Confidence 345689999999999976532 2245655444335699999999988743 3333 2348999999999
Q ss_pred cCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCc
Q 040254 117 DFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPR 196 (555)
Q Consensus 117 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 196 (555)
.+. .++..+..+++|+.|+++++.....+| .+..+++|++|++++|......|..+..+++|+.|++++|.....+|.
T Consensus 622 ~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 622 KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred ccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 988 477788899999999999887777777 478899999999999876556788899999999999999877777776
Q ss_pred CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc-------ccc
Q 040254 197 DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS-------FLL 269 (555)
Q Consensus 197 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~ 269 (555)
.+ .+++|+.|++++|.....+|.. ..+|++|++.+|.+. .+|.. ..+++|+.|.+.++..... .+.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccchh
Confidence 55 6899999999998765455543 468999999999876 56632 2578888888876432211 111
Q ss_pred cccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEecccc-CCCCCCccccccccCCCCCccEEEccCccc
Q 040254 270 TLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNF-MNEATPNYDQNKISDGFQNLRAVSLAGCQL 348 (555)
Q Consensus 270 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i 348 (555)
.....++|+.|++++|...+.+|..+. .+++|+.|++++|. +...+.. ..+++|+.|++++|..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~--------~L~~L~~L~Ls~C~~L~~LP~~-------~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQ--------NLHKLEHLEIENCINLETLPTG-------INLESLESLDLSGCSR 837 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhh--------CCCCCCEEECCCCCCcCeeCCC-------CCccccCEEECCCCCc
Confidence 223357899999999877667776544 45578888887764 3332221 2467888999988755
Q ss_pred ccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254 349 TGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV 411 (555)
Q Consensus 349 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 411 (555)
...+|.. ..+|++|++++|.+. .+|..+..+++|++|++++|+-...+|.....++.|.
T Consensus 838 L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 838 LRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred ccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 4344432 357888999998887 6777888888999999988654445555554444443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.8e-19 Score=186.51 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=21.3
Q ss_pred EEccCccccccCChhccCCCCCCeeeCCCccceeecchhh
Q 040254 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQI 488 (555)
Q Consensus 449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 488 (555)
|++++|+++ .+|..+..++.|+.|+|++|.+++..+..+
T Consensus 427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 445555555 445555555555566666665555555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=5e-19 Score=185.65 Aligned_cols=272 Identities=22% Similarity=0.238 Sum_probs=189.7
Q ss_pred CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCC
Q 040254 76 TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAAS 155 (555)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 155 (555)
..-..|+++.+.++. .|..++. +|+.|++++|+++. +|. ..++|++|++++|++.. +|.. .++
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l~~--------~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCLPA--------HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPG 263 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcchhc--------CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccc
Confidence 446678888887773 4444432 67888888888774 553 24678888888776553 4432 357
Q ss_pred CCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcC
Q 040254 156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235 (555)
Q Consensus 156 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 235 (555)
|+.|++++|.++.+.. -.++|+.|++++|++. .+|.. .++|+.|++++|.+.+ +|.. ...|+.|++.+
T Consensus 264 L~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred cceeeccCCchhhhhh----chhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 7788888887775432 2256778888888776 34432 3678888888888873 4432 23577788888
Q ss_pred ccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEec
Q 040254 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT 315 (555)
Q Consensus 236 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~ 315 (555)
|.+. .+|. ...+|+.|++++|.++.... ...+|+.|++++|++. .+|.. ..+|+.|+++
T Consensus 332 N~L~-~LP~----lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~-~LP~l-----------~~~L~~LdLs 390 (788)
T PRK15387 332 NQLT-SLPT----LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL-----------PSGLKELIVS 390 (788)
T ss_pred Cccc-cccc----cccccceEecCCCccCCCCC----CCcccceehhhccccc-cCccc-----------ccccceEEec
Confidence 8776 4542 22578888888888875332 1356778888888877 34431 1368888999
Q ss_pred cccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCcc
Q 040254 316 MNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395 (555)
Q Consensus 316 ~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 395 (555)
+|.++..+. .+++|+.|++++|.++ .+|.. +.+|+.|++++|+++ .+|..+..+++|+.|+|++|+
T Consensus 391 ~N~Lt~LP~---------l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 391 GNRLTSLPV---------LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCcccCCCC---------cccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence 988876542 2467999999999988 45643 346888999999998 778888899999999999999
Q ss_pred Cccccchhhhccccch
Q 040254 396 ISGEFPKELSRLQPLV 411 (555)
Q Consensus 396 l~~~~~~~~~~l~~L~ 411 (555)
+++..+..+..+....
T Consensus 457 Ls~~~~~~L~~l~s~~ 472 (788)
T PRK15387 457 LSERTLQALREITSAP 472 (788)
T ss_pred CCchHHHHHHHHhcCc
Confidence 9988777775554443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.4e-18 Score=170.78 Aligned_cols=106 Identities=23% Similarity=0.210 Sum_probs=54.9
Q ss_pred EEEccCCcCccc-cCCCCccccccCCCCCccEEEccCCcCCc----cCCccccCCCCCcEEEccCCCCCC------CCcH
Q 040254 80 IIDLSYNSLSGE-LTGLIPSLAWNHSFCSMRLLDFSYNDFSS----QVPPRLGNCSRLKSFQAGYSNLLR------SLPD 148 (555)
Q Consensus 80 ~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~~~~~~------~~~~ 148 (555)
.|+|.++.+++. ....++. +..|++|+++++.++. .++..+...+.+++++++++.... .++.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~------l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~ 75 (319)
T cd00116 2 QLSLKGELLKTERATELLPK------LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ 75 (319)
T ss_pred ccccccCcccccchHHHHHH------HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH
Confidence 466666666632 2222222 3357777777777643 134445566667777777655431 1223
Q ss_pred hhhcCCCCCeeEeecccCcccccccccCCCC---CcEEEcccCccc
Q 040254 149 DIYAAASLEEPSLHFNKLSGFISNDIINLTS---LLVLELYSKELI 191 (555)
Q Consensus 149 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~L~~n~~~ 191 (555)
.+.++++|++|++++|.+....+..+..+.. |++|++++|.+.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 4445556666666665554333333333332 555555555443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.8e-18 Score=169.99 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=95.5
Q ss_pred EEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc------cCCccccC
Q 040254 55 HLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS------QVPPRLGN 128 (555)
Q Consensus 55 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~------~~~~~~~~ 128 (555)
.|+|+.+.+++.--...|..++.|++|+++++.++......++... ...+.+++++++++.+.+ .++..+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l--~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL--RPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH--hhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 4566666665332334566677777777777777543222222211 134467777777776651 23345667
Q ss_pred CCCCcEEEccCCCCCCCCcHhhhcCCC---CCeeEeecccCccc----ccccccCC-CCCcEEEcccCccccC----CCc
Q 040254 129 CSRLKSFQAGYSNLLRSLPDDIYAAAS---LEEPSLHFNKLSGF----ISNDIINL-TSLLVLELYSKELIGS----IPR 196 (555)
Q Consensus 129 l~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~l~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~~~~~----~~~ 196 (555)
+++|++|++++|.+....+..+..+.. |++|++++|+++.. ....+..+ ++|+.|++++|.+++. +..
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 888888888888776666666655555 89999998887632 12234455 6777777777776532 122
Q ss_pred CccCCCCCCeeeCccCcCc
Q 040254 197 DIGKLTNLKYLLLYRNNLS 215 (555)
Q Consensus 197 ~l~~l~~L~~L~L~~n~l~ 215 (555)
.+..+++|++|++++|.+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 160 ALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHhCCCcCEEECcCCCCc
Confidence 3344455666666665554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=5e-17 Score=171.82 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEccCccccccCChhccCCCCCCeeeCCCccceeecchhhh----CCccCCeeeCCCCCCC
Q 040254 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQIS----QLTILERLDLSKNHLS 505 (555)
Q Consensus 449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----~l~~L~~L~Ls~N~l~ 505 (555)
|++++|.++ .+|..+. ..|+.|++++|+|+ .+|..+. .++.+..|++.+|+|+
T Consensus 372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 555555555 2333332 24555666666655 3333322 2355566666666654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=2.7e-16 Score=166.30 Aligned_cols=244 Identities=25% Similarity=0.326 Sum_probs=138.4
Q ss_pred CCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcC
Q 040254 156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235 (555)
Q Consensus 156 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 235 (555)
...|+++++.++.+ |..+. +.++.|++++|.+. .+|..+. ++|+.|++++|.++ .+|..+. .+|+.|++++
T Consensus 180 ~~~L~L~~~~LtsL-P~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTI-PACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcC-Ccccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 44555555555542 22221 34555555555554 2333322 35666666666555 3343332 2466666666
Q ss_pred ccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEec
Q 040254 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT 315 (555)
Q Consensus 236 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~ 315 (555)
|.+. .+|.. + ..+|+.|++++|.+... +..+ .++|+.|++++|+++ .+|..+. .+|+.|+++
T Consensus 251 N~L~-~LP~~-l--~s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~lp----------~sL~~L~Ls 312 (754)
T PRK15370 251 NRIT-ELPER-L--PSALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIR-TLPAHLP----------SGITHLNVQ 312 (754)
T ss_pred CccC-cCChh-H--hCCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccc-cCcccch----------hhHHHHHhc
Confidence 6555 44421 1 23566666666665532 2222 135666666666665 2332211 246666777
Q ss_pred cccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCcc
Q 040254 316 MNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395 (555)
Q Consensus 316 ~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 395 (555)
+|.++..+.. .+++|+.|++++|.++. +|..+. ++|+.|++++|++. .+|..+ .++|++|+|++|+
T Consensus 313 ~N~Lt~LP~~--------l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 313 SNSLTALPET--------LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred CCccccCCcc--------ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCc
Confidence 7777654321 23578888888888874 555443 68888999988887 566554 3688899999988
Q ss_pred Cccccchhhh-ccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCCh----hccCCCCC
Q 040254 396 ISGEFPKELS-RLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA----ETGQLKFL 470 (555)
Q Consensus 396 l~~~~~~~~~-~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~----~~~~l~~L 470 (555)
++ .+|..+. .++. |++++|+++ .+|. .+..++.+
T Consensus 379 Lt-~LP~~l~~sL~~---------------------------------------LdLs~N~L~-~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 379 LT-NLPENLPAALQI---------------------------------------MQASRNNLV-RLPESLPHFRGEGPQP 417 (754)
T ss_pred CC-CCCHhHHHHHHH---------------------------------------HhhccCCcc-cCchhHHHHhhcCCCc
Confidence 88 4554443 3333 455555555 3333 33445777
Q ss_pred CeeeCCCccce
Q 040254 471 NVLDLGNNNFA 481 (555)
Q Consensus 471 ~~L~Ls~N~l~ 481 (555)
..|++.+|.++
T Consensus 418 ~~L~L~~Npls 428 (754)
T PRK15370 418 TRIIVEYNPFS 428 (754)
T ss_pred cEEEeeCCCcc
Confidence 88888888886
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=9.4e-18 Score=137.89 Aligned_cols=177 Identities=28% Similarity=0.493 Sum_probs=143.2
Q ss_pred CCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCC
Q 040254 306 CKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPS 385 (555)
Q Consensus 306 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 385 (555)
+..++.|.+++|.++..++.. ..+.+|+.|++.+|+++ ..|..++.+++|+.|+++-|++. ..|.+|+.+|.
T Consensus 32 ~s~ITrLtLSHNKl~~vppni------a~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNI------AELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhcccCceeecCCcH------HHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 345556666666666665544 45678899999999998 78888999999999999999998 89999999999
Q ss_pred CcEEEccCccCcc-ccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc
Q 040254 386 LFYFALSQNNISG-EFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET 464 (555)
Q Consensus 386 L~~L~L~~n~l~~-~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~ 464 (555)
|+.|||++|.+.. .+|..|-.++.|+. |+|++|.+. .+|...
T Consensus 104 levldltynnl~e~~lpgnff~m~tlra------------------------------------lyl~dndfe-~lp~dv 146 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRA------------------------------------LYLGDNDFE-ILPPDV 146 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHH------------------------------------HHhcCCCcc-cCChhh
Confidence 9999999999864 57777777777773 888999998 788999
Q ss_pred cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-CCC---CCCCCCccCCCcCCC
Q 040254 465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-GQL---HTFPPSSFEGNPEFC 534 (555)
Q Consensus 465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~---~~l~~~~~~gNp~~c 534 (555)
+++++|+.|.+..|.+- ..|..++.+..|++|.+.+|+++ .+|.. ..+ ..-....++.|||+-
T Consensus 147 g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~------vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT------VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee------ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 99999999999999998 88999999999999999999997 66653 111 112233467799874
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.1e-17 Score=135.86 Aligned_cols=165 Identities=32% Similarity=0.515 Sum_probs=115.9
Q ss_pred cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254 46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR 125 (555)
Q Consensus 46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 125 (555)
.+-++.+++.|.||+|+++ .+|+.+.. +.+|++|++++|+|+. .|..+++ +++|+.|++.-|++. ..|..
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie~-lp~~iss------l~klr~lnvgmnrl~-~lprg 97 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIEE-LPTSISS------LPKLRILNVGMNRLN-ILPRG 97 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhhh-cChhhhh------chhhhheecchhhhh-cCccc
Confidence 3445667788888888888 78877444 8888888888888874 4444443 448888888888877 57888
Q ss_pred ccCCCCCcEEEccCCCCC-CCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCC
Q 040254 126 LGNCSRLKSFQAGYSNLL-RSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL 204 (555)
Q Consensus 126 ~~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 204 (555)
|+.++.|+.||+.+|++. ..+|..|..++.|+.|.++.|.++- .|..++.+++|+.|.+..|.+. ..|..++.++.|
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 888888888888877764 3567777777777777777777653 4556677777777777666664 456666666666
Q ss_pred CeeeCccCcCcccCCcccc
Q 040254 205 KYLLLYRNNLSGSLPSSMM 223 (555)
Q Consensus 205 ~~L~L~~n~l~~~~~~~l~ 223 (555)
+.|++.+|+++ .+|..++
T Consensus 176 relhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 176 RELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHHhcccceee-ecChhhh
Confidence 66666666666 4444433
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=4.3e-11 Score=126.60 Aligned_cols=120 Identities=35% Similarity=0.564 Sum_probs=103.5
Q ss_pred CCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc
Q 040254 385 SLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET 464 (555)
Q Consensus 385 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~ 464 (555)
.++.|+|++|.+.+.+|..+..++.|. .|+|++|.+++.+|..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~------------------------------------~L~Ls~N~l~g~iP~~~ 462 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQ------------------------------------SINLSGNSIRGNIPPSL 462 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCC------------------------------------EEECCCCcccCcCChHH
Confidence 478899999999999998888888887 59999999999999999
Q ss_pred cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCCCCccCCCcCCCCcccCCCC
Q 040254 465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFPPSSFEGNPEFCSDIANRSS 542 (555)
Q Consensus 465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~~~~~~gNp~~c~~~~~~~~ 542 (555)
..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|+++ |.+|.. .....+..+++.||+.+|+.+....|
T Consensus 463 ~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~-----g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS-----GRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc-----ccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999999999999999999999999999999999886 788864 12234556789999999998776788
Q ss_pred CCC
Q 040254 543 TTE 545 (555)
Q Consensus 543 ~~~ 545 (555)
...
T Consensus 538 ~~~ 540 (623)
T PLN03150 538 GPH 540 (623)
T ss_pred ccc
Confidence 643
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=8.2e-12 Score=115.02 Aligned_cols=136 Identities=23% Similarity=0.244 Sum_probs=79.5
Q ss_pred CCCCCccEEEccCcccccc----cchhhhCCCCCcEEEccCCccccc----cCccccCCCCCcEEEccCccCccc----c
Q 040254 333 DGFQNLRAVSLAGCQLTGQ----VPLWLSKLTKLEVLLLSGNQITGS----IPGWFGNLPSLFYFALSQNNISGE----F 400 (555)
Q Consensus 333 ~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~ 400 (555)
...+.|+.+....|++... +...|...+.|+.+.++.|.|... +..++..+++|+.|||+.|-++.. +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3445566666666655421 234455566677777777766522 223456677777777777766521 1
Q ss_pred chhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChh-----ccCCCCCCeeeC
Q 040254 401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAE-----TGQLKFLNVLDL 475 (555)
Q Consensus 401 ~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~-----~~~l~~L~~L~L 475 (555)
...++.+++|+ .+++++|.+....... -...+.|++|.+
T Consensus 234 akaL~s~~~L~------------------------------------El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 234 AKALSSWPHLR------------------------------------ELNLGDCLLENEGAIAFVDALKESAPSLEVLEL 277 (382)
T ss_pred HHHhcccchhe------------------------------------eecccccccccccHHHHHHHHhccCCCCceecc
Confidence 12233333333 3555555554332222 134678899999
Q ss_pred CCccceee----cchhhhCCccCCeeeCCCCCC
Q 040254 476 GNNNFAGS----IPNQISQLTILERLDLSKNHL 504 (555)
Q Consensus 476 s~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l 504 (555)
.+|.|+.. +...+...+.|+.|+|++|++
T Consensus 278 ~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 278 AGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99988732 334456678899999999998
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=4.9e-12 Score=116.47 Aligned_cols=93 Identities=27% Similarity=0.390 Sum_probs=44.3
Q ss_pred ccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhh-----hCCCCCcEEEccCCccccc--
Q 040254 303 LMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL-----SKLTKLEVLLLSGNQITGS-- 375 (555)
Q Consensus 303 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~n~l~~~-- 375 (555)
+..|++|+.|++.+|-++..........+ ..+++|+.|++++|.+......++ ...++|+.|.+.+|.++..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL-~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKAL-SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHh-cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 33444444444444444433322222222 344556666666665543322222 2245666666666666532
Q ss_pred --cCccccCCCCCcEEEccCccC
Q 040254 376 --IPGWFGNLPSLFYFALSQNNI 396 (555)
Q Consensus 376 --~~~~~~~l~~L~~L~L~~n~l 396 (555)
+...+...+.|+.|+|++|.+
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhcchhhHHhcCCcccc
Confidence 112233456666666666666
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-11 Score=116.03 Aligned_cols=225 Identities=22% Similarity=0.218 Sum_probs=130.5
Q ss_pred cCCCCCccccCCccc----cCCCCCCEEEccCCcCcCcCch-hHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254 33 PAMNKLVQRYHLPSI----GNLTHISHLNLSHNHVHGPLPI-NSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS 107 (555)
Q Consensus 33 ~~~~~~i~~~~~~~~----~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 107 (555)
.+++..+.+.....+ .++.+||.+.|.+..+. ..+. ...+.|++++.||||+|=|.. ..+-......+++
T Consensus 99 si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~n----w~~v~~i~eqLp~ 173 (505)
T KOG3207|consen 99 SISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHN----WFPVLKIAEQLPS 173 (505)
T ss_pred hhcCceeEEecHHHHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHh----HHHHHHHHHhccc
Confidence 344444444444333 25778888888887776 3442 466778888888888886653 2222223336678
Q ss_pred ccEEEccCCcCCccCCcc-ccCCCCCcEEEccCCCCCCCC-cHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254 108 MRLLDFSYNDFSSQVPPR-LGNCSRLKSFQAGYSNLLRSL-PDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL 185 (555)
Q Consensus 108 L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (555)
|+.|+++.|++....... -..+++|+.|.++.|.+.... ......+++|+.|++..|....+......-++.|++|||
T Consensus 174 Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 174 LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred chhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 888888888776422111 225677888888877765321 223345678888888877533333444555677788888
Q ss_pred ccCccccCCC-cCccCCCCCCeeeCccCcCccc-CCcc-----ccCCCCCCEEECcCccCccccC-cccccCCCCCcEEE
Q 040254 186 YSKELIGSIP-RDIGKLTNLKYLLLYRNNLSGS-LPSS-----MMNCTNLKTLNLMGNLFAGNLS-AYNFSVLSQLETID 257 (555)
Q Consensus 186 ~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~ 257 (555)
++|.+..... ...+.++.|+.|+++.+.+... .|+. ...+++|+.|++..|++. ..+ ...+..+++|+.|.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhh
Confidence 8877764321 1345677777777777776632 1111 234566666666666654 111 11223344455555
Q ss_pred cccccc
Q 040254 258 LYINMF 263 (555)
Q Consensus 258 l~~n~~ 263 (555)
+..|.+
T Consensus 333 ~~~n~l 338 (505)
T KOG3207|consen 333 ITLNYL 338 (505)
T ss_pred cccccc
Confidence 444444
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3e-10 Score=98.33 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=34.2
Q ss_pred CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhh-hcC
Q 040254 75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDI-YAA 153 (555)
Q Consensus 75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l 153 (555)
..++++|+|++|+|+.+. .+.. .+.+|+.|++++|.++. + +.+..+++|++|++++|++... ...+ ..+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie--~L~~-----~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~l 87 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE--NLGA-----TLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNL 87 (175)
T ss_dssp --------------------S--T-----T-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-
T ss_pred cccccccccccccccccc--chhh-----hhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhC
Confidence 444555666665555221 1110 12355666666666553 2 2355566666666665555433 2223 245
Q ss_pred CCCCeeEeecccCcccc-cccccCCCCCcEEEcccCccccCCCc----CccCCCCCCeeeC
Q 040254 154 ASLEEPSLHFNKLSGFI-SNDIINLTSLLVLELYSKELIGSIPR----DIGKLTNLKYLLL 209 (555)
Q Consensus 154 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~L 209 (555)
++|++|++++|+|.... ...+..+++|+.|++.+|++... +. .+..+|+|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 66666666666665432 23455666666666666666432 11 1334555555554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1.4e-10 Score=104.66 Aligned_cols=129 Identities=31% Similarity=0.356 Sum_probs=79.0
Q ss_pred CCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccc--hhhhccccc
Q 040254 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP--KELSRLQPL 410 (555)
Q Consensus 333 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L 410 (555)
..+..|+++++++|.|+ .+..++.-.+.++.|++++|.+... +.++.+++|+.|||++|.++.... ..+++.+
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK-- 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK-- 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEe--
Confidence 44567888888888887 4566667778888888888888733 237778888888888888763221 1111211
Q ss_pred hhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeec-chhhh
Q 040254 411 VIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSI-PNQIS 489 (555)
Q Consensus 411 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~ 489 (555)
+|.|+.|.+.. -.++.++-+|..||+++|+|.... -..++
T Consensus 356 -------------------------------------tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG 396 (490)
T KOG1259|consen 356 -------------------------------------TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIG 396 (490)
T ss_pred -------------------------------------eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccc
Confidence 34455554431 123455556666666666665221 12356
Q ss_pred CCccCCeeeCCCCCCC
Q 040254 490 QLTILERLDLSKNHLS 505 (555)
Q Consensus 490 ~l~~L~~L~Ls~N~l~ 505 (555)
++|-|+.+.|.+|+|+
T Consensus 397 ~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 397 NLPCLETLRLTGNPLA 412 (490)
T ss_pred cccHHHHHhhcCCCcc
Confidence 6666666666666665
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.6e-10 Score=109.61 Aligned_cols=189 Identities=22% Similarity=0.217 Sum_probs=139.3
Q ss_pred ccccCCCCCCEEEccCCcCcCcCc-hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc-cC
Q 040254 45 PSIGNLTHISHLNLSHNHVHGPLP-INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QV 122 (555)
Q Consensus 45 ~~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~ 122 (555)
.....|++++.|||++|-+...-+ ..+...+|+|+.|+++.|.+....-.... ..+++|+.|.++.|.++. .+
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-----~~l~~lK~L~l~~CGls~k~V 214 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-----LLLSHLKQLVLNSCGLSWKDV 214 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-----hhhhhhheEEeccCCCCHHHH
Confidence 467789999999999998774322 23566899999999999988732221111 145689999999999885 34
Q ss_pred CccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccc-cccccCCCCCcEEEcccCccccC-CCcC---
Q 040254 123 PPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI-SNDIINLTSLLVLELYSKELIGS-IPRD--- 197 (555)
Q Consensus 123 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~-~~~~--- 197 (555)
...+..+|.|+.|+|..|............+..|++|+|++|.+.... -.....++.|+.|.++.+.+... .|+.
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch
Confidence 445678999999999998644443444556789999999999987643 24577899999999999988643 2322
Q ss_pred --ccCCCCCCeeeCccCcCcccCC--ccccCCCCCCEEECcCccCc
Q 040254 198 --IGKLTNLKYLLLYRNNLSGSLP--SSMMNCTNLKTLNLMGNLFA 239 (555)
Q Consensus 198 --l~~l~~L~~L~L~~n~l~~~~~--~~l~~~~~L~~L~l~~n~l~ 239 (555)
...+++|++|++..|++. ..+ ..+..+++|+.|.+..|.+.
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 245789999999999985 222 23455677888888887775
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=7.6e-11 Score=115.23 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=32.5
Q ss_pred EEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhC---CccCCeeeCCCC
Q 040254 448 TIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQ---LTILERLDLSKN 502 (555)
Q Consensus 448 ~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---l~~L~~L~Ls~N 502 (555)
.||+|.|+++ .+|..|.+|+.|++|-|.+|.++ ..|..+.. ..=.++|+..-+
T Consensus 215 ~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 215 RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 3677777776 56667777777777777777776 55554432 222445555555
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=4.5e-10 Score=97.18 Aligned_cols=104 Identities=27% Similarity=0.293 Sum_probs=20.2
Q ss_pred CCCeeEeecccCccccccccc-CCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccc-cCCCCCCEEE
Q 040254 155 SLEEPSLHFNKLSGFISNDII-NLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSM-MNCTNLKTLN 232 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~ 232 (555)
.+++|++++|.|+.+ +.+. .+.+|+.|++++|.+... +.+..+++|+.|++++|.++. +.+.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 344444444444432 1222 234444444444444322 123344444444444444442 22222 2344444444
Q ss_pred CcCccCccccCcccccCCCCCcEEEcccccc
Q 040254 233 LMGNLFAGNLSAYNFSVLSQLETIDLYINMF 263 (555)
Q Consensus 233 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 263 (555)
+++|.+...-....+..+++|+.|++.+|.+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 4444443211112233344444444444443
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=7.5e-10 Score=119.75 Aligned_cols=85 Identities=25% Similarity=0.262 Sum_probs=39.4
Q ss_pred ccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254 126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK 205 (555)
Q Consensus 126 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 205 (555)
|..++.|++|||++|.-.+.+|..++++.+|++|+++++.++. .|..+..++.|.+|++..+.....++.....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 4444444444444444444444444444445555554444443 344444444555555444433333333333445555
Q ss_pred eeeCcc
Q 040254 206 YLLLYR 211 (555)
Q Consensus 206 ~L~L~~ 211 (555)
+|.+..
T Consensus 646 ~L~l~~ 651 (889)
T KOG4658|consen 646 VLRLPR 651 (889)
T ss_pred EEEeec
Confidence 554443
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=2.6e-09 Score=113.14 Aligned_cols=109 Identities=28% Similarity=0.431 Sum_probs=93.7
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccc
Q 040254 361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYN 440 (555)
Q Consensus 361 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 440 (555)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..++.|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~----------------------------- 469 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE----------------------------- 469 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC-----------------------------
Confidence 377889999999888888888999999999999999888888888888777
Q ss_pred cccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCC-ccCCeeeCCCCCCC
Q 040254 441 RIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQL-TILERLDLSKNHLS 505 (555)
Q Consensus 441 ~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~ 505 (555)
.|+|++|++++.+|..+.++++|+.|+|++|.+++.+|..+... .++..+++++|...
T Consensus 470 -------~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 470 -------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred -------EEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 58999999998999999999999999999999999999888763 46778888888753
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=5.9e-11 Score=115.99 Aligned_cols=128 Identities=32% Similarity=0.480 Sum_probs=88.4
Q ss_pred CCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhh
Q 040254 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQ 414 (555)
Q Consensus 335 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~ 414 (555)
+..|.+++++.|.+. ..|..++.|+ |+.|.+++|+++ .+|..++..+.|..||.+.|.+. .+|..+.++..|+.
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~-- 193 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD-- 193 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH--
Confidence 445666777777766 5566666653 777777777777 66666677777777777777776 55556666666553
Q ss_pred ccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccC
Q 040254 415 NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTIL 494 (555)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 494 (555)
+.+..|.+. .+|..+..+ .|..||+|+|+++ .+|-.|.++..|
T Consensus 194 ----------------------------------l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L 236 (722)
T KOG0532|consen 194 ----------------------------------LNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL 236 (722)
T ss_pred ----------------------------------HHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence 445555555 455555533 3777888888887 788888888888
Q ss_pred CeeeCCCCCCC
Q 040254 495 ERLDLSKNHLS 505 (555)
Q Consensus 495 ~~L~Ls~N~l~ 505 (555)
++|-|.+|++.
T Consensus 237 q~l~LenNPLq 247 (722)
T KOG0532|consen 237 QVLQLENNPLQ 247 (722)
T ss_pred eeeeeccCCCC
Confidence 88888888887
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=2.2e-09 Score=116.18 Aligned_cols=234 Identities=24% Similarity=0.263 Sum_probs=142.8
Q ss_pred CCCCCCEEEccCCc--CcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254 49 NLTHISHLNLSHNH--VHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL 126 (555)
Q Consensus 49 ~l~~L~~L~L~~n~--~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 126 (555)
.+++|++|-+..|. +. .++..+|..++.|++|||++|.=-+..|..+..+. +||||+++++.+. .+|..+
T Consensus 543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li------~LryL~L~~t~I~-~LP~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV------HLRYLDLSDTGIS-HLPSGL 614 (889)
T ss_pred CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh------hhhcccccCCCcc-ccchHH
Confidence 34578999998886 55 78888899999999999998765556777777666 8999999999988 589999
Q ss_pred cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc--ccccccccCCCCCcEEEcccCccccCCCcCccCCCCC
Q 040254 127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS--GFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL 204 (555)
Q Consensus 127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 204 (555)
+++..|.+|++..+.....++.....+.+|++|.+...... ......+..+.+|+.+....... .+-..+..+++|
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L 692 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRL 692 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHH
Confidence 99999999999887766666777777899999988766522 12223344555555555533222 111112233333
Q ss_pred C----eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccC------CCCCcEEEcccccccccccccccCC
Q 040254 205 K----YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSV------LSQLETIDLYINMFTGSFLLTLTSC 274 (555)
Q Consensus 205 ~----~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~------l~~L~~L~l~~n~~~~~~~~~l~~~ 274 (555)
. .+.+..+... ..+..+..+.+|+.|.+.++.+.. ........ ++++..+...++..-. .+.+.-..
T Consensus 693 ~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~ 769 (889)
T KOG4658|consen 693 RSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFA 769 (889)
T ss_pred HHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch-hhcccccccchhhhHHHHHHHHhhcccccc-ccchhhcc
Confidence 3 3333232322 344456777888888888776642 11111111 1222222222222111 12222345
Q ss_pred CCCcEEEcccceecccCChhh
Q 040254 275 RLLTALRLACNQLEGQIPPEI 295 (555)
Q Consensus 275 ~~L~~L~l~~n~~~~~~~~~l 295 (555)
++|+.|.+..+...+.+.+..
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred CcccEEEEecccccccCCCHH
Confidence 788888888776654444433
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=4.3e-09 Score=106.46 Aligned_cols=176 Identities=31% Similarity=0.415 Sum_probs=89.6
Q ss_pred CccEEEccCCcCCccCCccccCCC-CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCS-RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL 185 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (555)
.+..|++.+|.++. ++....... +|+.|++++|.+. .+|..+..++.|+.|+++.|+++.+ +......++|+.|++
T Consensus 117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheec
Confidence 45555555555552 333344342 5555555544432 2333455555555555555555543 222224555555666
Q ss_pred ccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254 186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
++|.+. .+|........|+.+.+++|... ..+..+..+.++..+.+.+|++. .++ ..+..+.+++.|++++|.+..
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~-~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP-ESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc-chhccccccceeccccccccc
Confidence 555554 33332233344666666666432 23344555555566655555544 111 234555566666666666654
Q ss_pred cccccccCCCCCcEEEcccceecccC
Q 040254 266 SFLLTLTSCRLLTALRLACNQLEGQI 291 (555)
Q Consensus 266 ~~~~~l~~~~~L~~L~l~~n~~~~~~ 291 (555)
... +....+++.++++++.+....
T Consensus 270 i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 270 ISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccc--ccccCccCEEeccCccccccc
Confidence 333 556666666666666665433
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=4.4e-10 Score=101.44 Aligned_cols=133 Identities=25% Similarity=0.229 Sum_probs=99.2
Q ss_pred hhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCC
Q 040254 150 IYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK 229 (555)
Q Consensus 150 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 229 (555)
+..+..|+++|+++|.|+.+ .+...-.+.++.|+++.|.+... +.+..+++|+.|||++|.++ .+..+-..+.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 44456778888888888763 44566678888888888888643 33777888888899888887 4555666677888
Q ss_pred EEECcCccCccccCcccccCCCCCcEEEccccccccc-ccccccCCCCCcEEEcccceecc
Q 040254 230 TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS-FLLTLTSCRLLTALRLACNQLEG 289 (555)
Q Consensus 230 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~ 289 (555)
+|.+++|.+. .+. .+..+-+|..|++++|++... ....++.+|.|+.+.+.+|.+.+
T Consensus 356 tL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 8999888776 333 466677888889988888754 34567788999999999988874
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=4.8e-09 Score=106.10 Aligned_cols=147 Identities=34% Similarity=0.449 Sum_probs=92.6
Q ss_pred CccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccch---hhhccccchhh
Q 040254 337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPK---ELSRLQPLVIE 413 (555)
Q Consensus 337 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~~ 413 (555)
+|+.|++++|.+. .++..+..++.|+.|++++|++. .++......+.|+.|++++|++. .+|. ....++.+.+.
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 5666667666665 44455666677777777777766 33333335666777777777766 3333 23336666666
Q ss_pred hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCcc
Q 040254 414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI 493 (555)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 493 (555)
+|........+. .......+.+.+|++. ..+..+..+++++.|++++|.++...+ ++.+.+
T Consensus 218 ~N~~~~~~~~~~----------------~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~ 278 (394)
T COG4886 218 NNSIIELLSSLS----------------NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTN 278 (394)
T ss_pred CCcceecchhhh----------------hcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCc
Confidence 653211111000 0001113557777776 336778888899999999999994444 888999
Q ss_pred CCeeeCCCCCCC
Q 040254 494 LERLDLSKNHLS 505 (555)
Q Consensus 494 L~~L~Ls~N~l~ 505 (555)
++.|++++|.++
T Consensus 279 l~~L~~s~n~~~ 290 (394)
T COG4886 279 LRELDLSGNSLS 290 (394)
T ss_pred cCEEeccCcccc
Confidence 999999999987
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.7e-09 Score=75.06 Aligned_cols=61 Identities=43% Similarity=0.570 Sum_probs=54.3
Q ss_pred CCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccC
Q 040254 336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNI 396 (555)
Q Consensus 336 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 396 (555)
|+|++|++++|+++...+.+|..+++|++|++++|++....+++|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999877778899999999999999999988888999999999999999975
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.4e-09 Score=74.24 Aligned_cols=61 Identities=33% Similarity=0.509 Sum_probs=41.1
Q ss_pred CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcC
Q 040254 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDF 118 (555)
Q Consensus 51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 118 (555)
|+|++|++++|.+. .+|..+|.++++|++|++++|+++...++.|.. +++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~------l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN------LPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTT------STTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcC------CCCCCEEeCcCCcC
Confidence 46677777777776 677777777777777777777777665555543 33666666666653
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=8.4e-10 Score=110.96 Aligned_cols=127 Identities=24% Similarity=0.259 Sum_probs=95.5
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
.|...++++|.+. .+-.++.-++.++.|+|++|++... ..+..++.|++|||++|.+..+..-...+++ |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 5778888888887 3556677788899999999887765 3678889999999999988876544455555 8999999
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccC-CccccCCCCCCEEECcCccCc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL-PSSMMNCTNLKTLNLMGNLFA 239 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~ 239 (555)
+|.++.. ..+.++.+|+.||+++|-+.+.. -..+..+..|+.|++.+|++.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8887643 24677889999999998876321 122445567888999998875
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=1.1e-08 Score=103.59 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=35.5
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccc-ccccCCCCCcEEEc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLEL 185 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L 185 (555)
+|++|++++|.|+.. ..+..++.|+.|++.+|.+... ..+..++.|+.+++++|.+..+.. . ...+.+++.+++
T Consensus 119 ~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l 193 (414)
T KOG0531|consen 119 NLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL 193 (414)
T ss_pred cchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc
Confidence 555555555555421 1233344455555554444322 223334455555555555544322 1 344455555555
Q ss_pred ccCcc
Q 040254 186 YSKEL 190 (555)
Q Consensus 186 ~~n~~ 190 (555)
.+|.+
T Consensus 194 ~~n~i 198 (414)
T KOG0531|consen 194 GGNSI 198 (414)
T ss_pred cCCch
Confidence 55544
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=5.3e-09 Score=105.93 Aligned_cols=129 Identities=29% Similarity=0.254 Sum_probs=69.4
Q ss_pred CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCC--CcEEEccCccCccccchhhhccccch
Q 040254 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPS--LFYFALSQNNISGEFPKELSRLQPLV 411 (555)
Q Consensus 334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~ 411 (555)
.+.+++.+.+.+|.+.. ..++..+..+..+++..|++...-+ +..+.. |+.+++++|++.. .+..+..+..+.
T Consensus 184 ~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~ 258 (414)
T KOG0531|consen 184 ELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLP 258 (414)
T ss_pred hccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-cccccccccccc
Confidence 34566667777776652 2333444455555677776663221 222232 6777777777662 211222222221
Q ss_pred hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceee---cchh-
Q 040254 412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGS---IPNQ- 487 (555)
Q Consensus 412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~- 487 (555)
.+++.+|++... ..+...+.+.++....|.+... ....
T Consensus 259 ------------------------------------~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 259 ------------------------------------VLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred ------------------------------------ccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccc
Confidence 355666665532 2244556677777777776521 2221
Q ss_pred hhCCccCCeeeCCCCCCC
Q 040254 488 ISQLTILERLDLSKNHLS 505 (555)
Q Consensus 488 l~~l~~L~~L~Ls~N~l~ 505 (555)
....+.++.+.+.+|.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIR 318 (414)
T ss_pred ccccccccccccccCccc
Confidence 456778888888888876
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.2e-09 Score=98.66 Aligned_cols=181 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred CCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc--HhhhcCC
Q 040254 77 LLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP--DDIYAAA 154 (555)
Q Consensus 77 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~l~ 154 (555)
.|++||||...|+...-. .....+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.-..... --+..++
T Consensus 186 Rlq~lDLS~s~it~stl~-----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH-----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHH-----HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 466777776665522100 001134567777777777666555556666777777776654332221 2245667
Q ss_pred CCCeeEeecccCccccccc-ccC-CCCCcEEEcccCcccc---CCCcCccCCCCCCeeeCccCc-CcccCCccccCCCCC
Q 040254 155 SLEEPSLHFNKLSGFISND-IIN-LTSLLVLELYSKELIG---SIPRDIGKLTNLKYLLLYRNN-LSGSLPSSMMNCTNL 228 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~-~~~-l~~L~~L~L~~n~~~~---~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L 228 (555)
.|.+|+++++.+....... +.+ -++|+.|+++|+.-.- .+......+++|.+|||+.|. ++......+.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 7777777777654321111 111 1456677776654321 111112456777777777664 333333456667777
Q ss_pred CEEECcCccCccccCcccccCCCCCcEEEccccc
Q 040254 229 KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM 262 (555)
Q Consensus 229 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 262 (555)
++|.++.|.....-....+...+.|.+|++.++-
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 7777777653211111234556666777665553
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=3.1e-08 Score=100.00 Aligned_cols=59 Identities=31% Similarity=0.248 Sum_probs=46.7
Q ss_pred CCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc
Q 040254 336 QNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397 (555)
Q Consensus 336 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 397 (555)
-.|...+++.|.+. .+..++.-++.++.|+|++|+++... .+..++.|++|||+.|.+.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc
Confidence 45777788888887 56777788888888888888887443 6778888888888888876
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=1.6e-07 Score=84.01 Aligned_cols=209 Identities=21% Similarity=0.161 Sum_probs=105.4
Q ss_pred cccCCCCCcEEEcccCccccCCCc----CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCccccc
Q 040254 173 DIINLTSLLVLELYSKELIGSIPR----DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFS 248 (555)
Q Consensus 173 ~~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 248 (555)
++..|+.|+..+++.|.+....|. .++.-+.|.+|.+++|.+...-..-++. .|.+ +..| ....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n--------KKaa 154 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN--------KKAA 154 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH--------hhhc
Confidence 344556666666666655444333 2344566666666666654111000100 0000 0000 0011
Q ss_pred CCCCCcEEEccccccccc----ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCC
Q 040254 249 VLSQLETIDLYINMFTGS----FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATP 324 (555)
Q Consensus 249 ~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~ 324 (555)
.-+.|+.+....|.+..- ....+.....|+.+.+..|.|. |..+..+.-+.+..|.+|+.|++.+|.++....
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 224455555544444321 1222334456777777777655 333333333345556677777777777766555
Q ss_pred ccccccccCCCCCccEEEccCcccccccchhh------hCCCCCcEEEccCCccccccCcc-------ccCCCCCcEEEc
Q 040254 325 NYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL------SKLTKLEVLLLSGNQITGSIPGW-------FGNLPSLFYFAL 391 (555)
Q Consensus 325 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l------~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L 391 (555)
.+....+ ..++.|+.|.+..|-++......+ ...++|..|-..+|.+.+.+... -..+|-|..|.+
T Consensus 232 ~~La~al-~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ 310 (388)
T COG5238 232 RYLADAL-CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLER 310 (388)
T ss_pred HHHHHHh-cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHH
Confidence 4443333 445667888888886654332221 12467777777777655322111 134666777777
Q ss_pred cCccCc
Q 040254 392 SQNNIS 397 (555)
Q Consensus 392 ~~n~l~ 397 (555)
.+|.+.
T Consensus 311 ngNr~~ 316 (388)
T COG5238 311 NGNRIK 316 (388)
T ss_pred ccCcch
Confidence 777775
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.1e-08 Score=88.31 Aligned_cols=182 Identities=23% Similarity=0.220 Sum_probs=94.1
Q ss_pred CCCeeeCccCcCcc-cCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccc-cccc-ccccccCCCCCcE
Q 040254 203 NLKYLLLYRNNLSG-SLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM-FTGS-FLLTLTSCRLLTA 279 (555)
Q Consensus 203 ~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~l~~~~~L~~ 279 (555)
.||++||+...++. .+-..+++|.+|+.|.+.++++.+.+. ..+..-.+|+.|+++.+. ++.. ..-.+..|..|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46666666655541 122334556666666666666554333 334445566666665432 2221 1123445666666
Q ss_pred EEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcc-cccccchhhhC
Q 040254 280 LRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQ-LTGQVPLWLSK 358 (555)
Q Consensus 280 L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~ 358 (555)
|+++.+....+... ...-.--+.|+.|++++.+-.-.... .......+|+|..||+++|. ++......|.+
T Consensus 265 LNlsWc~l~~~~Vt------v~V~hise~l~~LNlsG~rrnl~~sh--~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVT------VAVAHISETLTQLNLSGYRRNLQKSH--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred cCchHhhccchhhh------HHHhhhchhhhhhhhhhhHhhhhhhH--HHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 66666644322111 00111123455555554322111110 11222456777788887763 34344556677
Q ss_pred CCCCcEEEccCCccccccCcc---ccCCCCCcEEEccCcc
Q 040254 359 LTKLEVLLLSGNQITGSIPGW---FGNLPSLFYFALSQNN 395 (555)
Q Consensus 359 l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~ 395 (555)
++.|++|.++.|-. ++|.. +...|+|.+|++.++-
T Consensus 337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 78888888887753 34443 4567888888888753
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=2.2e-06 Score=55.51 Aligned_cols=37 Identities=46% Similarity=0.659 Sum_probs=30.2
Q ss_pred CCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 468 KFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 468 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
++|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46899999999999 56667899999999999999987
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=5.3e-07 Score=72.29 Aligned_cols=72 Identities=22% Similarity=0.304 Sum_probs=33.0
Q ss_pred ccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254 338 LRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV 411 (555)
Q Consensus 338 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 411 (555)
|+..++++|.+....+..-..++.++.+++++|++. .+|..+..++.|+.|+++.|++. ..|+.+..|..++
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 344444444444222222233344555555555555 34444555555555555555554 3333333344443
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=8.5e-07 Score=79.50 Aligned_cols=203 Identities=22% Similarity=0.248 Sum_probs=105.7
Q ss_pred CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCC---ccC-------CccccCCCCCcEEEccCCCCCC
Q 040254 75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFS---SQV-------PPRLGNCSRLKSFQAGYSNLLR 144 (555)
Q Consensus 75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~---~~~-------~~~~~~l~~L~~L~L~~~~~~~ 144 (555)
+..+..++||+|-|.......+...+. +-.+|+..+++.-... ..+ ..++.+||+|+..+|+.|.+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia--~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIA--NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHh--hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 677888888888777554444444332 3456777777654221 122 2334567777777777776655
Q ss_pred CCcHh----hhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccC--
Q 040254 145 SLPDD----IYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL-- 218 (555)
Q Consensus 145 ~~~~~----~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-- 218 (555)
..|.. ++..+.|.+|.+++|.+..+.-..++. .|.+| ..|+ -...-|.|+.+....|++..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~nK-------Kaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYNK-------KAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHHh-------hhccCCCceEEEeccchhccCcHH
Confidence 55543 334466666666666554322111110 00000 0111 1123356677777666664221
Q ss_pred --CccccCCCCCCEEECcCccCccc----cCcccccCCCCCcEEEccccccccc----ccccccCCCCCcEEEcccceec
Q 040254 219 --PSSMMNCTNLKTLNLMGNLFAGN----LSAYNFSVLSQLETIDLYINMFTGS----FLLTLTSCRLLTALRLACNQLE 288 (555)
Q Consensus 219 --~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 288 (555)
...+..-..|+++.+.+|.|... +....+..+++|+.|++.+|.++-. ...++..++.|++|.+..|-++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 11233334677777777765421 1112233456777777777766532 2344555666777777666555
Q ss_pred cc
Q 040254 289 GQ 290 (555)
Q Consensus 289 ~~ 290 (555)
..
T Consensus 256 ~~ 257 (388)
T COG5238 256 NE 257 (388)
T ss_pred cc
Confidence 33
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.6e-06 Score=78.86 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=28.5
Q ss_pred CCCCCccEEEccCccccc-ccchhhhCCCCCcEEEccCCccccccCc------cccCCCCCcEEE
Q 040254 333 DGFQNLRAVSLAGCQLTG-QVPLWLSKLTKLEVLLLSGNQITGSIPG------WFGNLPSLFYFA 390 (555)
Q Consensus 333 ~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~ 390 (555)
..+|.+..|.++.+++.. ..-..+..+++|+.|.++++.+.+.+.. .++++++++.|+
T Consensus 221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 344555555666555541 1123345556666666666665543322 134455555554
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=2.6e-06 Score=77.48 Aligned_cols=15 Identities=33% Similarity=0.363 Sum_probs=8.1
Q ss_pred CCCCCEEEccCCcCc
Q 040254 75 LTLLEIIDLSYNSLS 89 (555)
Q Consensus 75 l~~L~~L~Ls~n~i~ 89 (555)
+..++.+||.+|.|+
T Consensus 70 ~~~v~elDL~~N~iS 84 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS 84 (418)
T ss_pred hhhhhhhhcccchhc
Confidence 445555555555554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=9.5e-06 Score=86.11 Aligned_cols=183 Identities=17% Similarity=0.151 Sum_probs=103.3
Q ss_pred ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcC-------cCc-----hhHH--hcCCCCCEEEccCCcCc-c
Q 040254 26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHG-------PLP-----INSF--HFLTLLEIIDLSYNSLS-G 90 (555)
Q Consensus 26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~-------~i~-----~~~~--~~l~~L~~L~Ls~n~i~-~ 90 (555)
.+.++..++.+..........+.+.. |+++.|.+-.... .+. ...+ ..-.+|++||+++...- .
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~ 137 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN 137 (699)
T ss_pred hheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence 34555666665555555554454444 6666665532111 011 1111 01256788888775422 1
Q ss_pred ccCCCCccccccCCCCCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccc
Q 040254 91 ELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF 169 (555)
Q Consensus 91 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 169 (555)
..+..+.. .+|+|+.|.+++-.+.. .......++++|..||++++++... .+++.+++|+.|.+.+-.+...
T Consensus 138 ~W~~kig~-----~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~ 210 (699)
T KOG3665|consen 138 GWPKKIGT-----MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESY 210 (699)
T ss_pred cHHHHHhh-----hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCch
Confidence 11111111 46678888877765543 2334456778888888887766544 5677788888888777666542
Q ss_pred -ccccccCCCCCcEEEcccCccccCC--C----cCccCCCCCCeeeCccCcCcc
Q 040254 170 -ISNDIINLTSLLVLELYSKELIGSI--P----RDIGKLTNLKYLLLYRNNLSG 216 (555)
Q Consensus 170 -~~~~~~~l~~L~~L~L~~n~~~~~~--~----~~l~~l~~L~~L~L~~n~l~~ 216 (555)
.-..+.++++|+.||++........ . +.-..+|+|+.||.++..+..
T Consensus 211 ~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 211 QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 2235667888888888765543221 1 112246788888888777653
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.8e-05 Score=50.39 Aligned_cols=36 Identities=53% Similarity=0.609 Sum_probs=22.2
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCccCc
Q 040254 361 KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397 (555)
Q Consensus 361 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 397 (555)
+|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666777777666 34445666777777777777666
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00041 Score=68.03 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=13.8
Q ss_pred CCCCeeeCccCcCcccCCccccCCCCCCEEECcCc
Q 040254 202 TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN 236 (555)
Q Consensus 202 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 236 (555)
++|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 34555555554433 2222222 34555555443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=0.00012 Score=63.25 Aligned_cols=103 Identities=18% Similarity=0.151 Sum_probs=53.5
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccc-cccccCCCCCcEEEc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI-SNDIINLTSLLVLEL 185 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L 185 (555)
+...+||++|.+. ....|..+++|..|.+.+|+++...|.--.-++.|+.|.+.+|+|..+. ...+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4556666666654 2233555666666666666655555543334455666666666665432 133455556666666
Q ss_pred ccCccccCC---CcCccCCCCCCeeeCcc
Q 040254 186 YSKELIGSI---PRDIGKLTNLKYLLLYR 211 (555)
Q Consensus 186 ~~n~~~~~~---~~~l~~l~~L~~L~L~~ 211 (555)
-+|+....- .-.+..+++|+.||...
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 555543211 01233455555555543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=6.1e-06 Score=66.33 Aligned_cols=105 Identities=30% Similarity=0.372 Sum_probs=76.1
Q ss_pred CCcEEEccCCccccccCc---cccCCCCCcEEEccCccCccccchhhhccc-cchhhhccCCCCCCCCCccccCCCcccc
Q 040254 361 KLEVLLLSGNQITGSIPG---WFGNLPSLFYFALSQNNISGEFPKELSRLQ-PLVIEQNKFNRNKPDLPFFLFPNQNSTS 436 (555)
Q Consensus 361 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~~~~~~~~~~~~l~~~~~~~~~~~~ 436 (555)
.+..++|++|++. .+++ .+.....|+..+|++|.+. .+|+.|...- ...
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t------------------------- 80 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTAT------------------------- 80 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhh-------------------------
Confidence 4566777777765 2222 3444556777788888876 4555443321 121
Q ss_pred cccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 437 HQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 437 ~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
++++++|.++ .+|.++..++.|+.|++++|.+. ..|..+..+.++-.||.-+|.+.
T Consensus 81 -----------~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 81 -----------TLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred -----------hhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 4778888888 78888999999999999999998 77888888999999999999885
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.60 E-value=0.00014 Score=60.54 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=36.9
Q ss_pred ccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCc
Q 040254 45 PSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPP 124 (555)
Q Consensus 45 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 124 (555)
.+|..+++|+.+.+.. .+. .++..+|.++++|+.+.+..+ +.......|. .+.+|+.+.+.+ .+......
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~------~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFS------NCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTT------T-TT-EEEEETS-TT-EE-TT
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeee------cccccccccccc-cccccccc
Confidence 3566666777777664 344 566666776666776666653 4433322332 222455555544 33322333
Q ss_pred cccCCCCCcEEEcc
Q 040254 125 RLGNCSRLKSFQAG 138 (555)
Q Consensus 125 ~~~~l~~L~~L~L~ 138 (555)
+|..+++|+.+++.
T Consensus 76 ~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 76 AFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TTECEEEET
T ss_pred cccccccccccccC
Confidence 44555555555554
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.60 E-value=0.00014 Score=60.46 Aligned_cols=127 Identities=18% Similarity=0.191 Sum_probs=57.2
Q ss_pred cCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCC
Q 040254 66 PLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRS 145 (555)
Q Consensus 66 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 145 (555)
.++..+|.++++|+.+.+.. .+.......|. .+.+|+.+.+.++ +......+|.+++.++.+.+.. .....
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~------~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i 72 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFS------NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSI 72 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTT------T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhcc------ccccccccccccc-ccccceeeeecccccccccccc-ccccc
Confidence 45677788888888888874 45544444443 2336777777764 5544555677776777777753 33322
Q ss_pred CcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCC
Q 040254 146 LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNL 204 (555)
Q Consensus 146 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 204 (555)
-...|..+++++.+.+..+ +..+....|.++ +++.+.+.. .+.......|.++++|
T Consensus 73 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 2334555666777766554 444455556665 666666543 2223333344444444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00014 Score=62.74 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-CCccccCCC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-VPPRLGNCS 130 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~ 130 (555)
+...+||++|.+. .++. |.+++.|..|.+.+|+|+.+.|..-+ .+++|..|.+.+|.+... .-.-+..|+
T Consensus 43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~------~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDT------FLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhh------hccccceEEecCcchhhhhhcchhccCC
Confidence 4567888888776 5554 77788888888888888876664433 234788888888887741 123367788
Q ss_pred CCcEEEccCCCCCCCCc---HhhhcCCCCCeeEeeccc
Q 040254 131 RLKSFQAGYSNLLRSLP---DDIYAAASLEEPSLHFNK 165 (555)
Q Consensus 131 ~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~l~~n~ 165 (555)
+|++|.+-+|.....-- ..+.++++|+.||+..-.
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88888888776543311 235677888888887644
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=3.4e-05 Score=82.01 Aligned_cols=207 Identities=16% Similarity=0.127 Sum_probs=117.2
Q ss_pred ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccC---------CCCccccccCCCCCccEEEccCCc
Q 040254 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELT---------GLIPSLAWNHSFCSMRLLDFSYND 117 (555)
Q Consensus 47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~---------~~~~~~~~~~~~~~L~~L~ls~n~ 117 (555)
+...-++...++.+.... ........... |++|.+.+-....... ..+........-.+|++|++++..
T Consensus 56 ~~~~f~ltki~l~~~~~~-~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~ 133 (699)
T KOG3665|consen 56 IIRKFNLTKIDLKNVTLQ-HQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSE 133 (699)
T ss_pred hhhhheeEEeeccceecc-hhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccc
Confidence 334446667777766655 44444455344 7777777532111100 111222211133468888888764
Q ss_pred CCc-cCC-ccccCCCCCcEEEccCCCCCCC-CcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc-C
Q 040254 118 FSS-QVP-PRLGNCSRLKSFQAGYSNLLRS-LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG-S 193 (555)
Q Consensus 118 l~~-~~~-~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~ 193 (555)
.-. .-+ ..-..+|.|++|.+++-.+... +.....++++|..||++++.++.+ ..++.+++|+.|.+.+=.+.. .
T Consensus 134 ~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 134 LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQ 211 (699)
T ss_pred hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchh
Confidence 421 111 1123578888888886444322 223345678888888888888765 667888888888886655432 1
Q ss_pred CCcCccCCCCCCeeeCccCcCcccC------CccccCCCCCCEEECcCccCccccCcccccCCCCCcEEE
Q 040254 194 IPRDIGKLTNLKYLLLYRNNLSGSL------PSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETID 257 (555)
Q Consensus 194 ~~~~l~~l~~L~~L~L~~n~l~~~~------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 257 (555)
.-..+-.+++|++||+|........ -+.-..+|.|+.|+.++..+...+.......-++|+.+.
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 1123456888888888876544211 122344778888888887766444333333334444443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00046 Score=67.70 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=87.7
Q ss_pred cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC-cCCccCCc
Q 040254 46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN-DFSSQVPP 124 (555)
Q Consensus 46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~ 124 (555)
-+..+.++++|++++|.+. .+|. + -++|++|.++++.--...|+.+|. +|++|++++| .+. .+|.
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP~--------nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSIPE--------GLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchhhh--------hhhheEccCccccc-cccc
Confidence 3556789999999999887 7772 2 246999999985433345555543 8999999998 554 3443
Q ss_pred cccCCCCCcEEEccCCCC--CCCCcHhhhcCCCCCeeEeecccCccccccccc-CC-CCCcEEEcccCccccCCCcCccC
Q 040254 125 RLGNCSRLKSFQAGYSNL--LRSLPDDIYAAASLEEPSLHFNKLSGFISNDII-NL-TSLLVLELYSKELIGSIPRDIGK 200 (555)
Q Consensus 125 ~~~~l~~L~~L~L~~~~~--~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~l-~~L~~L~L~~n~~~~~~~~~l~~ 200 (555)
.|+.|++..+.. ...+|. .|+.|.+.+++-.. ...+. .+ ++|++|++++|... ..|..+.
T Consensus 113 ------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP- 176 (426)
T PRK15386 113 ------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNI-ILPEKLP- 176 (426)
T ss_pred ------ccceEEeCCCCCcccccCcc------hHhheecccccccc--ccccccccCCcccEEEecCCCcc-cCccccc-
Confidence 477777765443 333444 45677764432110 01111 12 58999999988865 3454444
Q ss_pred CCCCCeeeCccCc
Q 040254 201 LTNLKYLLLYRNN 213 (555)
Q Consensus 201 l~~L~~L~L~~n~ 213 (555)
.+|+.|+++.+.
T Consensus 177 -~SLk~L~ls~n~ 188 (426)
T PRK15386 177 -ESLQSITLHIEQ 188 (426)
T ss_pred -ccCcEEEecccc
Confidence 689999998764
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.42 E-value=4.7e-06 Score=79.44 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCCCccEEEccCcccc-cc----cchhhhCCCCCcEEEccCCccc-cccCccccCCCCCcEEEccCccC
Q 040254 333 DGFQNLRAVSLAGCQLT-GQ----VPLWLSKLTKLEVLLLSGNQIT-GSIPGWFGNLPSLFYFALSQNNI 396 (555)
Q Consensus 333 ~~~~~L~~L~l~~n~i~-~~----~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 396 (555)
..++.|+.+.+++|... +. ....-.....+..+.|++++.. +..-+.+..+++|+.+++-+++-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 34455566666555332 11 1122234556777777777543 23334556677777777777653
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00066 Score=61.34 Aligned_cols=113 Identities=18% Similarity=0.077 Sum_probs=68.1
Q ss_pred CCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc-c
Q 040254 43 HLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-Q 121 (555)
Q Consensus 43 ~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~ 121 (555)
+......+..|+.|++.+..++ .+.. |..+++|+.|.+|.|.+... ..+..++. .+++|++|+++.|++.. .
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~--~~l~vl~e--~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVS--GGLEVLAE--KAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred cccccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCccccc--ccceehhh--hCCceeEEeecCCcccccc
Confidence 5555666777777777777665 3332 66688888888888833311 12222222 34688888888888873 1
Q ss_pred CCccccCCCCCcEEEccCCCCCCCC---cHhhhcCCCCCeeEee
Q 040254 122 VPPRLGNCSRLKSFQAGYSNLLRSL---PDDIYAAASLEEPSLH 162 (555)
Q Consensus 122 ~~~~~~~l~~L~~L~L~~~~~~~~~---~~~~~~l~~L~~L~l~ 162 (555)
-...+..+.+|..|++.+|..+... ...|.-+++|+.|+-.
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred ccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 1122456777888888877655422 1234455777766643
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.00012 Score=66.38 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=66.7
Q ss_pred CCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-CCccccC
Q 040254 50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-VPPRLGN 128 (555)
Q Consensus 50 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~ 128 (555)
+.+++.|++.++.+. +|. +...++.|++|.||-|.|+... .+. .+.+|++|+|..|.|.+. -...+.+
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~-----pl~---rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLA-----PLQ---RCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccch-----hHH---HHHHHHHHHHHhcccccHHHHHHHhc
Confidence 456777888888877 444 4777888888888888887432 222 455788888888887752 1234677
Q ss_pred CCCCcEEEccCCCCCCCCcH-----hhhcCCCCCeeE
Q 040254 129 CSRLKSFQAGYSNLLRSLPD-----DIYAAASLEEPS 160 (555)
Q Consensus 129 l~~L~~L~L~~~~~~~~~~~-----~~~~l~~L~~L~ 160 (555)
+++|+.|.|..|...+.-+. .+.-+++|+.||
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888888887776554432 244456665554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0015 Score=59.03 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=69.1
Q ss_pred HHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC--cCCccCCccccCCCCCcEEEccCCCCCC-CCc
Q 040254 71 SFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN--DFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLP 147 (555)
Q Consensus 71 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~ 147 (555)
.+..+..|+.|++.+..++.. ..+| .+++|+.|.++.| ++.+.+......+++|+++++++|++.. .--
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFP------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCC------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 344567777777777766622 2333 3458888888888 5554444445566888888888887642 111
Q ss_pred HhhhcCCCCCeeEeecccCcccc---cccccCCCCCcEEEccc
Q 040254 148 DDIYAAASLEEPSLHFNKLSGFI---SNDIINLTSLLVLELYS 187 (555)
Q Consensus 148 ~~~~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~ 187 (555)
..+..+.+|..|++.+|..+... ...|.-+++|++|+-..
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 23556777888888887766532 22355677777776533
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.52 E-value=0.00016 Score=69.32 Aligned_cols=255 Identities=18% Similarity=0.105 Sum_probs=113.0
Q ss_pred CCCCCCEEEccCCc-CcCcCchhHHhcCCCCCEEEccCC-cCccccCCCCccccccCCCCCccEEEccCCcC-Cc-cCCc
Q 040254 49 NLTHISHLNLSHNH-VHGPLPINSFHFLTLLEIIDLSYN-SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDF-SS-QVPP 124 (555)
Q Consensus 49 ~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l-~~-~~~~ 124 (555)
.++++++|.+.++. +++.--..+-+.+++|++|++..| .+++..-.. +. ..+++|++|+++.+.- ++ -+..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~---la--~gC~kL~~lNlSwc~qi~~~gv~~ 236 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY---LA--EGCRKLKYLNLSWCPQISGNGVQA 236 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH---HH--HhhhhHHHhhhccCchhhcCcchH
Confidence 46666666666653 222222233445666777776663 333321111 11 1455677777766632 22 1112
Q ss_pred cccCCCCCcEEEccCCCCCCCCcHhhh----cCCCCCeeEeeccc-Cccccc-ccccCCCCCcEEEcccCccccCC-CcC
Q 040254 125 RLGNCSRLKSFQAGYSNLLRSLPDDIY----AAASLEEPSLHFNK-LSGFIS-NDIINLTSLLVLELYSKELIGSI-PRD 197 (555)
Q Consensus 125 ~~~~l~~L~~L~L~~~~~~~~~~~~~~----~l~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~-~~~ 197 (555)
.+.++..++.+.+.+|.-.+. ..+. ....+..+++..+. ++.... ..-..+..|+.|+.+++...+.. -..
T Consensus 237 ~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a 314 (483)
T KOG4341|consen 237 LQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA 314 (483)
T ss_pred HhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH
Confidence 234455555555554322111 1111 12223344433332 221110 11124566777777665432211 111
Q ss_pred c-cCCCCCCeeeCccCcC-cccCCccc-cCCCCCCEEECcCccCcccc-CcccccCCCCCcEEEccccccc-cccc----
Q 040254 198 I-GKLTNLKYLLLYRNNL-SGSLPSSM-MNCTNLKTLNLMGNLFAGNL-SAYNFSVLSQLETIDLYINMFT-GSFL---- 268 (555)
Q Consensus 198 l-~~l~~L~~L~L~~n~l-~~~~~~~l-~~~~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~~~-~~~~---- 268 (555)
+ ...++|+.+-++.++- +..-...+ .+++.|+.+++..+...... ....-..++.|+.+.++++... +...
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 2 3456777777776652 21111111 34556777777665433111 0012234667777777765432 2111
Q ss_pred ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccc
Q 040254 269 LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317 (555)
Q Consensus 269 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n 317 (555)
..-.....++.+.++.++...+. .+. .+..|++|+.+++.+.
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~--~Le-----~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDA--TLE-----HLSICRNLERIELIDC 436 (483)
T ss_pred hccccccccceeeecCCCCchHH--HHH-----HHhhCcccceeeeech
Confidence 11223456666666666543111 011 2345566666665543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.84 E-value=0.0016 Score=67.80 Aligned_cols=115 Identities=19% Similarity=0.019 Sum_probs=55.9
Q ss_pred CCCCCEEEccCCcCcCcCc-hhHHhcCCCCCEEEccCC-cCccccCCCCccccccCCCCCccEEEccCCc-CCccCCccc
Q 040254 50 LTHISHLNLSHNHVHGPLP-INSFHFLTLLEIIDLSYN-SLSGELTGLIPSLAWNHSFCSMRLLDFSYND-FSSQVPPRL 126 (555)
Q Consensus 50 l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~ 126 (555)
++.|+.+.+..+.-..... ......++.|+.|+++++ ......+....... ..+++|+.|+++++. +++..-.++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL--SICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh--hhcCCcCccchhhhhccCchhHHHH
Confidence 5667777766663221211 233445777777777763 21111111111111 134567777777766 443222333
Q ss_pred c-CCCCCcEEEccCCCC-CCC-CcHhhhcCCCCCeeEeecccC
Q 040254 127 G-NCSRLKSFQAGYSNL-LRS-LPDDIYAAASLEEPSLHFNKL 166 (555)
Q Consensus 127 ~-~l~~L~~L~L~~~~~-~~~-~~~~~~~l~~L~~L~l~~n~i 166 (555)
. .+++|++|.+..+.. +.. +......++.|++|+++++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2 366777777665542 211 122233456677777776543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.00053 Score=62.26 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=16.3
Q ss_pred CCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCC
Q 040254 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSN 141 (555)
Q Consensus 104 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~ 141 (555)
.|+.|++|.||-|.|++. ..+..|++|+.|+|..|.
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNC 74 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcc
Confidence 344555555555555421 124444444444444443
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.64 E-value=0.00013 Score=74.20 Aligned_cols=135 Identities=27% Similarity=0.300 Sum_probs=79.9
Q ss_pred CCccEEEccCcccccc----cchhhhCCCCCcEEEccCCcccc----ccCcccc----CCCCCcEEEccCccCccccc--
Q 040254 336 QNLRAVSLAGCQLTGQ----VPLWLSKLTKLEVLLLSGNQITG----SIPGWFG----NLPSLFYFALSQNNISGEFP-- 401 (555)
Q Consensus 336 ~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~----~l~~L~~L~L~~n~l~~~~~-- 401 (555)
+.+++|++..|.++.. +...+.....++.++++.|.+.. .++..+. ...++++|++++|.++...-
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 4556666666666532 34455566777888888877642 1222232 45678888888887762111
Q ss_pred --hhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc----CChhccCC-CCCCeee
Q 040254 402 --KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR----IPAETGQL-KFLNVLD 474 (555)
Q Consensus 402 --~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~----~~~~~~~l-~~L~~L~ 474 (555)
..+...+.+. ..+++..|.+... ....+..+ ..+++++
T Consensus 224 l~~~l~~~~~~~-----------------------------------~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 224 LDEVLASGESLL-----------------------------------RELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred HHHHHhccchhh-----------------------------------HHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 1112211111 1355666655432 22334445 6778889
Q ss_pred CCCccceee----cchhhhCCccCCeeeCCCCCCC
Q 040254 475 LGNNNFAGS----IPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 475 Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
++.|.|++. ..+.+..++.++++.+++|.+.
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 999988754 3445667788999999999887
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.54 E-value=0.0057 Score=32.78 Aligned_cols=21 Identities=48% Similarity=0.686 Sum_probs=14.2
Q ss_pred CCCeeeCCCccceeecchhhhC
Q 040254 469 FLNVLDLGNNNFAGSIPNQISQ 490 (555)
Q Consensus 469 ~L~~L~Ls~N~l~~~~~~~l~~ 490 (555)
+|++|||++|+|+ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3677888888777 56655554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.05 E-value=0.0047 Score=64.35 Aligned_cols=169 Identities=18% Similarity=0.121 Sum_probs=96.2
Q ss_pred ccccCCCCCCEEEccCC-cCcCcCc---hhHHhcCCCCCEEEccCCc-CccccCCCCccccccCCCCCccEEEccCCc-C
Q 040254 45 PSIGNLTHISHLNLSHN-HVHGPLP---INSFHFLTLLEIIDLSYNS-LSGELTGLIPSLAWNHSFCSMRLLDFSYND-F 118 (555)
Q Consensus 45 ~~~~~l~~L~~L~L~~n-~~~~~i~---~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l 118 (555)
+....+++|+.|+++++ ......+ ......+++|+.|+++.+. +++.....+.. .+++|++|.+.++. +
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~-----~c~~L~~L~l~~c~~l 282 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS-----RCPNLETLSLSNCSNL 282 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh-----hCCCcceEccCCCCcc
Confidence 45677899999999873 2111222 2355668999999999987 55432222211 36789999988887 5
Q ss_pred Ccc-CCccccCCCCCcEEEccCCCCCCC--CcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccc---c
Q 040254 119 SSQ-VPPRLGNCSRLKSFQAGYSNLLRS--LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELI---G 192 (555)
Q Consensus 119 ~~~-~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~ 192 (555)
++. +.....+++.|++|+++++..... +.....++++++.|.+.... .+..++.+.+.+.... .
T Consensus 283 t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~ 352 (482)
T KOG1947|consen 283 TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDD 352 (482)
T ss_pred chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCccHHHHHHHHhhccCchh
Confidence 542 233356789999999998776422 22233445666665443322 1334444444332221 1
Q ss_pred CCCcCccCCCCCCeeeCccCcCcccC-CccccCCCCC
Q 040254 193 SIPRDIGKLTNLKYLLLYRNNLSGSL-PSSMMNCTNL 228 (555)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L 228 (555)
........+++++.+.+.++...... ...+..++.|
T Consensus 353 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 353 LAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 11123456677777777776633211 1334445554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.53 E-value=0.017 Score=30.93 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=8.8
Q ss_pred CcEEEccCccCccccchhh
Q 040254 386 LFYFALSQNNISGEFPKEL 404 (555)
Q Consensus 386 L~~L~L~~n~l~~~~~~~~ 404 (555)
|++|+|++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444333
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.94 E-value=0.057 Score=30.20 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=17.3
Q ss_pred CCCCCEEEccCCcCcCcCchhHHh
Q 040254 50 LTHISHLNLSHNHVHGPLPINSFH 73 (555)
Q Consensus 50 l~~L~~L~L~~n~~~~~i~~~~~~ 73 (555)
+++|++|+|++|.+. .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 457788888888887 77877765
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.94 E-value=0.057 Score=30.20 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=17.3
Q ss_pred CCCCCEEEccCCcCcCcCchhHHh
Q 040254 50 LTHISHLNLSHNHVHGPLPINSFH 73 (555)
Q Consensus 50 l~~L~~L~L~~n~~~~~i~~~~~~ 73 (555)
+++|++|+|++|.+. .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 457788888888887 77877765
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.26 E-value=0.04 Score=27.32 Aligned_cols=13 Identities=46% Similarity=0.636 Sum_probs=5.1
Q ss_pred CCCeeeCCCccce
Q 040254 469 FLNVLDLGNNNFA 481 (555)
Q Consensus 469 ~L~~L~Ls~N~l~ 481 (555)
+|++|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.81 E-value=0.19 Score=28.06 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=8.8
Q ss_pred CCCCeeeCCCccce
Q 040254 468 KFLNVLDLGNNNFA 481 (555)
Q Consensus 468 ~~L~~L~Ls~N~l~ 481 (555)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.81 E-value=0.19 Score=28.06 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=8.8
Q ss_pred CCCCeeeCCCccce
Q 040254 468 KFLNVLDLGNNNFA 481 (555)
Q Consensus 468 ~~L~~L~Ls~N~l~ 481 (555)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.20 E-value=0.0023 Score=65.23 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=29.5
Q ss_pred CChhccCCCCCCeeeCCCccceeecchhh----hCCccCCeeeCCCCCCC
Q 040254 460 IPAETGQLKFLNVLDLGNNNFAGSIPNQI----SQLTILERLDLSKNHLS 505 (555)
Q Consensus 460 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~l~~L~~L~Ls~N~l~ 505 (555)
++..+...+.+++++++.|...+.-+..+ .....++.++++.|+++
T Consensus 396 l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 396 LAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT 445 (478)
T ss_pred hhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence 34445666778888888886654433222 22227888888888887
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.71 E-value=0.015 Score=51.62 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=24.0
Q ss_pred cCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 459 RIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 459 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
..|..+.+...++.+++.+|... ..|.++++.+.++++++.+|.++
T Consensus 79 ~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 79 FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 34444444444444555555554 45555555556666666555553
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.93 E-value=0.12 Score=28.16 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=11.0
Q ss_pred CCCCeeeCCCccceeecch
Q 040254 468 KFLNVLDLGNNNFAGSIPN 486 (555)
Q Consensus 468 ~~L~~L~Ls~N~l~~~~~~ 486 (555)
++|++|+|++|+|++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 5677777777777654433
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.65 E-value=0.021 Score=50.81 Aligned_cols=91 Identities=21% Similarity=0.243 Sum_probs=69.7
Q ss_pred hhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCc
Q 040254 354 LWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQN 433 (555)
Q Consensus 354 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~ 433 (555)
..+......+.||++.|++. .+-..|+.++.|..|+++.|++. ..|..+.+++++.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~---------------------- 91 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETV---------------------- 91 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHH----------------------
Confidence 34556678888999999887 44455777788889999988887 7777777777665
Q ss_pred ccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceee
Q 040254 434 STSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGS 483 (555)
Q Consensus 434 ~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 483 (555)
.+++..|..+ ..|..+...+.++.+++-.|.++..
T Consensus 92 --------------~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 92 --------------NAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred --------------HHHhhccchh-hCCccccccCCcchhhhccCcchHH
Confidence 2566666666 7888899999999999999987633
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.61 E-value=3.6 Score=41.14 Aligned_cols=110 Identities=21% Similarity=0.170 Sum_probs=58.2
Q ss_pred CCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhh---cCCCCCeeEeecccCcccccccc---cCC
Q 040254 104 SFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIY---AAASLEEPSLHFNKLSGFISNDI---INL 177 (555)
Q Consensus 104 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~---~l~~L~~L~l~~n~i~~~~~~~~---~~l 177 (555)
..+.+++++++.|.+....|-.+..-.. -+.++.|......-..+. .-..+.+++++.|......+..+ ..-
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 3455788888888877655544432111 144454444332211111 12346778888887766554332 223
Q ss_pred CCCcEEEcccCcccc---CCCcCccCCCCCCeeeCccCcCc
Q 040254 178 TSLLVLELYSKELIG---SIPRDIGKLTNLKYLLLYRNNLS 215 (555)
Q Consensus 178 ~~L~~L~L~~n~~~~---~~~~~l~~l~~L~~L~L~~n~l~ 215 (555)
..++.++.++..+.. ..+...+..++++..+++.|...
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 346666666655431 12223345567777787777654
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.65 E-value=0.14 Score=44.82 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCCCccEEEccCc-ccccccchhhhCCCCCcEEEccC
Q 040254 334 GFQNLRAVSLAGC-QLTGQVPLWLSKLTKLEVLLLSG 369 (555)
Q Consensus 334 ~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~ 369 (555)
..++|+.|++++| .|++..-.++..+++|+.|.+.+
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 3466667777665 45554555566666666666554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.40 E-value=0.17 Score=44.24 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=39.6
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc-Hhhh-cCCCCCeeEeecc-cCcccccccccCCCCCcEE
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIY-AAASLEEPSLHFN-KLSGFISNDIINLTSLLVL 183 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L 183 (555)
.++.+|.++..|..+.-+.+.+++.++.|.+.+|....... +.++ -.++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46777777777665555556666777777766554332210 0011 1245555555544 2443333334444444444
Q ss_pred Ec
Q 040254 184 EL 185 (555)
Q Consensus 184 ~L 185 (555)
.+
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 44
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.98 E-value=1.2 Score=24.88 Aligned_cols=15 Identities=60% Similarity=0.787 Sum_probs=12.3
Q ss_pred CccCCeeeCCCCCCC
Q 040254 491 LTILERLDLSKNHLS 505 (555)
Q Consensus 491 l~~L~~L~Ls~N~l~ 505 (555)
+.+|++|++++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 457888999999986
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.58 E-value=1.2 Score=24.74 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=7.3
Q ss_pred CCCeeeCCCccce
Q 040254 469 FLNVLDLGNNNFA 481 (555)
Q Consensus 469 ~L~~L~Ls~N~l~ 481 (555)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3555555555555
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=76.43 E-value=1.2 Score=45.38 Aligned_cols=67 Identities=22% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCCCCCEEEccCCcCcCcCch--hHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc
Q 040254 49 NLTHISHLNLSHNHVHGPLPI--NSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS 120 (555)
Q Consensus 49 ~l~~L~~L~L~~n~~~~~i~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 120 (555)
+.+.+..++|++|++. .+.. .+-...|+|+.|+|++|...-.....++++. ...|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k----~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK----GLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhc----CCCHHHeeecCCcccc
Confidence 5677777888888765 3332 2333467788888887722211222333332 2257777777777654
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.12 E-value=2.4 Score=24.07 Aligned_cols=14 Identities=50% Similarity=0.657 Sum_probs=10.6
Q ss_pred ccCCeeeCCCCCCC
Q 040254 492 TILERLDLSKNHLS 505 (555)
Q Consensus 492 ~~L~~L~Ls~N~l~ 505 (555)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888875
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.78 E-value=50 Score=33.47 Aligned_cols=61 Identities=23% Similarity=0.114 Sum_probs=41.6
Q ss_pred CccEEEccCcccccccch---hhhCCCCCcEEEccCCcccc----ccCccccCCCCCcEEEccCccCc
Q 040254 337 NLRAVSLAGCQLTGQVPL---WLSKLTKLEVLLLSGNQITG----SIPGWFGNLPSLFYFALSQNNIS 397 (555)
Q Consensus 337 ~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 397 (555)
-+..+.++.+........ .+..-+.+..|++++|.... .+|...+...+++.+..+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 456777777766533222 23445678899999998764 35666777778888888888765
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.69 E-value=4.6 Score=41.27 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=15.6
Q ss_pred CCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254 307 KNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346 (555)
Q Consensus 307 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 346 (555)
+.+..+.+++|++..+.... ++....|.|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~s---slsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALS---SLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhh---HHHHhcchhheeecccc
Confidence 34444555555444332211 12233444555555554
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.27 E-value=25 Score=43.70 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=15.1
Q ss_pred ccCccccccCChhccCCCCCCeeeCCCccce
Q 040254 451 LANNSLSGRIPAETGQLKFLNVLDLGNNNFA 481 (555)
Q Consensus 451 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 481 (555)
|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4455555444444444555555555555443
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.06 E-value=23 Score=19.46 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=11.9
Q ss_pred CCCCcEEEccCcc-Cc
Q 040254 383 LPSLFYFALSQNN-IS 397 (555)
Q Consensus 383 l~~L~~L~L~~n~-l~ 397 (555)
+++|++|+|++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4789999999986 44
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.11 E-value=39 Score=42.16 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=18.6
Q ss_pred EccCCcCcCcCchhHHhcCCCCCEEEccCCcCc
Q 040254 57 NLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS 89 (555)
Q Consensus 57 ~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~ 89 (555)
||++|+|. .++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 35555555 556556666666666666655544
Done!