Query 040254
Match_columns 555
No_of_seqs 318 out of 3781
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 10:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.1E-57 3.8E-62 498.1 35.8 531 5-550 31-756 (768)
2 3t6q_A CD180 antigen; protein- 100.0 7.7E-50 2.6E-54 426.6 36.4 476 23-537 29-564 (606)
3 3rgz_A Protein brassinosteroid 100.0 3.1E-49 1.1E-53 431.4 34.8 454 27-505 200-717 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-48 6.5E-53 421.4 39.1 511 9-538 6-627 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 6.2E-48 2.1E-52 411.9 36.2 475 11-538 15-563 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-47 5.6E-52 422.0 33.3 484 8-538 5-565 (844)
7 2z63_A TOLL-like receptor 4, v 100.0 2.3E-46 7.7E-51 397.1 34.4 481 8-538 8-536 (570)
8 3t6q_A CD180 antigen; protein- 100.0 1.9E-45 6.6E-50 392.6 37.1 444 26-505 56-560 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 6E-44 2.1E-48 386.2 40.3 478 33-532 10-596 (680)
10 4eco_A Uncharacterized protein 100.0 1.6E-46 5.6E-51 400.7 18.5 441 7-505 60-600 (636)
11 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-44 8.5E-49 379.5 27.4 445 51-537 26-514 (549)
12 3vq2_A TLR4, TOLL-like recepto 100.0 4.4E-44 1.5E-48 382.1 29.6 449 33-533 17-534 (606)
13 2z7x_B TOLL-like receptor 1, v 100.0 9E-44 3.1E-48 372.5 27.3 435 31-538 4-486 (520)
14 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-43 6.6E-48 389.6 29.0 465 34-534 11-540 (844)
15 4ecn_A Leucine-rich repeat pro 100.0 5.1E-43 1.8E-47 379.7 30.4 449 17-534 315-865 (876)
16 2z63_A TOLL-like receptor 4, v 100.0 1.5E-42 5E-47 367.8 30.4 416 24-505 49-531 (570)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-43 1.1E-47 371.0 23.7 455 12-505 10-510 (549)
18 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-41 1.9E-45 360.5 35.3 467 11-538 35-585 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 4.7E-42 1.6E-46 372.1 24.4 424 51-534 323-841 (876)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-41 6.5E-46 357.8 28.2 438 30-538 34-515 (562)
21 4eco_A Uncharacterized protein 100.0 6.7E-43 2.3E-47 372.8 10.8 366 60-485 192-604 (636)
22 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-41 1.4E-45 352.3 23.2 435 10-505 3-481 (520)
23 3v47_A TOLL-like receptor 5B a 100.0 2.3E-39 7.9E-44 333.4 28.5 370 51-505 30-408 (455)
24 3v47_A TOLL-like receptor 5B a 100.0 3.2E-38 1.1E-42 324.8 28.8 390 54-537 13-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.5E-38 1.2E-42 332.8 25.2 412 26-505 51-510 (562)
26 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-35 3.8E-40 319.2 31.6 441 42-533 45-555 (635)
27 1o6v_A Internalin A; bacterial 100.0 1.9E-34 6.5E-39 297.0 32.7 313 35-397 32-344 (466)
28 1jl5_A Outer protein YOPM; leu 100.0 2.1E-35 7.1E-40 301.4 25.1 392 28-535 12-431 (454)
29 1o6v_A Internalin A; bacterial 100.0 6.1E-34 2.1E-38 293.2 33.1 345 74-505 44-388 (466)
30 2id5_A Lingo-1, leucine rich r 100.0 8.5E-35 2.9E-39 300.9 26.4 332 6-398 1-334 (477)
31 2id5_A Lingo-1, leucine rich r 100.0 1.8E-34 6.3E-39 298.4 28.3 278 107-398 33-310 (477)
32 1jl5_A Outer protein YOPM; leu 100.0 7.9E-35 2.7E-39 297.1 23.9 381 27-505 34-429 (454)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-34 6E-39 294.8 25.6 222 37-291 28-249 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 5.8E-34 2E-38 286.7 24.2 335 75-537 44-378 (390)
35 3o6n_A APL1; leucine-rich repe 100.0 1.3E-32 4.3E-37 276.9 28.2 312 49-399 43-354 (390)
36 3oja_B Anopheles plasmodium-re 100.0 6.6E-33 2.2E-37 294.1 25.7 335 75-537 50-384 (597)
37 3bz5_A Internalin-J, INLJ; leu 100.0 4.8E-32 1.6E-36 276.9 28.3 305 26-398 41-353 (457)
38 4fmz_A Internalin; leucine ric 100.0 2.2E-31 7.4E-36 263.6 29.7 128 334-505 219-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 2.8E-32 9.6E-37 289.3 23.5 310 155-536 52-361 (597)
40 4fmz_A Internalin; leucine ric 100.0 4.3E-31 1.5E-35 261.5 28.6 308 46-397 39-346 (347)
41 1ogq_A PGIP-2, polygalacturona 100.0 6.5E-32 2.2E-36 262.6 18.9 260 178-543 50-313 (313)
42 1z7x_W Ribonuclease inhibitor; 100.0 7.9E-34 2.7E-38 292.6 -1.7 235 51-288 3-269 (461)
43 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-33 8.9E-38 288.7 -0.1 355 76-505 3-411 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.9E-34 248.7 24.4 288 52-395 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-29 4.1E-34 249.3 23.8 267 155-503 55-331 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-30 3.8E-35 253.9 16.0 271 5-286 25-302 (313)
47 1xku_A Decorin; proteoglycan, 100.0 1.1E-28 3.6E-33 242.4 28.9 246 52-323 32-279 (330)
48 1xku_A Decorin; proteoglycan, 100.0 7.6E-29 2.6E-33 243.4 27.5 290 130-503 31-330 (330)
49 2z66_A Variable lymphocyte rec 100.0 4.8E-28 1.7E-32 235.0 16.6 257 9-290 2-263 (306)
50 2z80_A TOLL-like receptor 2, v 100.0 1E-27 3.4E-32 237.7 18.6 287 46-401 26-318 (353)
51 3ogk_B Coronatine-insensitive 100.0 1.4E-29 4.7E-34 269.4 3.5 408 43-506 65-527 (592)
52 1ozn_A Reticulon 4 receptor; N 99.9 7.3E-27 2.5E-31 224.2 17.4 208 50-265 31-239 (285)
53 3zyi_A Leucine-rich repeat-con 99.9 4.8E-26 1.6E-30 233.3 23.8 236 42-289 68-304 (452)
54 2z80_A TOLL-like receptor 2, v 99.9 1E-26 3.4E-31 230.4 17.8 213 6-240 22-236 (353)
55 2z66_A Variable lymphocyte rec 99.9 3E-26 1E-30 222.4 20.3 181 107-288 29-212 (306)
56 3zyj_A Leucine-rich repeat-con 99.9 8.3E-26 2.8E-30 230.7 23.0 235 42-288 57-292 (440)
57 1ozn_A Reticulon 4 receptor; N 99.9 5E-26 1.7E-30 218.4 17.8 226 54-290 14-240 (285)
58 3zyj_A Leucine-rich repeat-con 99.9 2.9E-25 9.9E-30 226.7 23.1 229 26-264 63-292 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 2.5E-25 8.7E-30 227.9 22.2 250 6-265 44-304 (452)
60 4fcg_A Uncharacterized protein 99.9 3.5E-25 1.2E-29 216.4 20.2 225 50-287 80-313 (328)
61 4fcg_A Uncharacterized protein 99.9 9.2E-26 3.2E-30 220.5 15.8 242 11-265 58-315 (328)
62 3ogk_B Coronatine-insensitive 99.9 2.3E-27 7.7E-32 252.3 3.2 400 49-502 110-548 (592)
63 2p1m_B Transport inhibitor res 99.9 8.6E-28 2.9E-32 255.7 -3.3 403 46-505 61-519 (594)
64 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-23 9.3E-28 218.3 28.5 270 52-410 41-310 (622)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-23 5.8E-28 219.9 26.5 269 76-492 40-308 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1E-25 3.5E-30 219.5 7.8 258 158-503 14-273 (317)
67 2p1m_B Transport inhibitor res 99.9 2.9E-27 9.9E-32 251.6 -4.2 400 47-503 101-542 (594)
68 1wwl_A Monocyte differentiatio 99.9 7.8E-26 2.7E-30 219.8 5.7 234 46-288 38-287 (312)
69 1wwl_A Monocyte differentiatio 99.9 8.6E-26 3E-30 219.5 6.0 60 334-398 251-310 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.9 8E-25 2.7E-29 213.1 11.8 252 108-411 12-265 (317)
71 2o6q_A Variable lymphocyte rec 99.9 7E-23 2.4E-27 194.6 21.4 198 32-239 21-218 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 4E-23 1.4E-27 197.1 19.0 206 51-265 28-238 (276)
73 2z62_A TOLL-like receptor 4, v 99.9 9.6E-23 3.3E-27 194.5 18.5 226 55-292 11-241 (276)
74 3oja_A Leucine-rich immune mol 99.9 1.4E-23 4.7E-28 216.2 12.1 128 333-500 141-270 (487)
75 2o6q_A Variable lymphocyte rec 99.9 6E-22 2.1E-26 188.1 22.1 200 52-262 17-216 (270)
76 3oja_A Leucine-rich immune mol 99.9 6E-23 2.1E-27 211.4 15.2 230 155-411 35-265 (487)
77 2xwt_C Thyrotropin receptor; s 99.9 1.3E-22 4.3E-27 189.2 16.0 223 6-261 2-236 (239)
78 3rfs_A Internalin B, repeat mo 99.9 3.4E-22 1.2E-26 190.0 16.9 181 47-238 37-217 (272)
79 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.8E-26 187.2 19.0 201 47-262 6-206 (290)
80 3rfs_A Internalin B, repeat mo 99.9 9.1E-22 3.1E-26 187.0 17.0 227 52-299 20-246 (272)
81 1p9a_G Platelet glycoprotein I 99.9 3.8E-21 1.3E-25 184.2 20.1 199 28-240 11-209 (290)
82 3goz_A Leucine-rich repeat-con 99.9 1.4E-22 5E-27 201.0 8.0 110 183-293 3-127 (362)
83 3goz_A Leucine-rich repeat-con 99.9 1.6E-22 5.3E-27 200.8 7.4 270 110-404 2-304 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 2.2E-21 7.5E-26 180.8 13.8 214 8-236 14-236 (239)
85 2ca6_A RAN GTPase-activating p 99.8 2.7E-22 9.2E-27 201.1 4.6 134 336-505 159-316 (386)
86 3m19_A Variable lymphocyte rec 99.8 3.2E-20 1.1E-24 174.2 18.1 133 107-239 60-192 (251)
87 4glp_A Monocyte differentiatio 99.8 5E-21 1.7E-25 185.7 13.1 202 75-287 90-306 (310)
88 4glp_A Monocyte differentiatio 99.8 6E-21 2.1E-25 185.1 12.6 204 155-397 92-307 (310)
89 2ast_B S-phase kinase-associat 99.8 2.2E-21 7.6E-26 190.7 8.8 222 52-285 48-282 (336)
90 3m19_A Variable lymphocyte rec 99.8 1.1E-19 3.9E-24 170.4 19.0 179 76-264 14-192 (251)
91 1h6u_A Internalin H; cell adhe 99.8 7.3E-20 2.5E-24 177.0 17.7 207 33-265 25-231 (308)
92 2ca6_A RAN GTPase-activating p 99.8 6.7E-22 2.3E-26 198.3 2.7 65 336-400 244-319 (386)
93 2o6s_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 167.5 14.6 189 9-227 2-190 (208)
94 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.5E-24 179.5 17.3 246 11-285 6-256 (350)
95 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6E-24 174.3 18.2 208 56-289 24-231 (308)
96 2ast_B S-phase kinase-associat 99.8 1.5E-20 5E-25 184.9 9.7 205 154-397 70-284 (336)
97 4ay9_X Follicle-stimulating ho 99.8 6.8E-19 2.3E-23 173.6 14.4 201 54-265 12-216 (350)
98 2o6s_A Variable lymphocyte rec 99.8 2.1E-18 7.2E-23 156.8 15.4 131 107-237 29-159 (208)
99 2v9t_B SLIT homolog 2 protein 99.8 1.5E-18 5.2E-23 158.9 14.5 164 5-191 2-165 (220)
100 2xot_A Amphoterin-induced prot 99.8 6.2E-19 2.1E-23 174.6 12.0 178 310-537 21-206 (361)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-18 1.1E-22 156.8 14.5 164 5-190 2-165 (220)
102 2xot_A Amphoterin-induced prot 99.8 1.8E-18 6.1E-23 171.3 12.0 163 6-191 10-176 (361)
103 3e6j_A Variable lymphocyte rec 99.8 1.7E-17 5.9E-22 152.9 16.2 164 5-192 10-173 (229)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-17 5.2E-22 152.3 15.5 133 108-240 34-167 (220)
105 2v9t_B SLIT homolog 2 protein 99.7 1.6E-17 5.4E-22 152.1 15.6 134 107-240 33-166 (220)
106 1h6t_A Internalin B; cell adhe 99.7 1.3E-17 4.3E-22 159.8 15.1 184 33-239 30-213 (291)
107 1h6t_A Internalin B; cell adhe 99.7 4.8E-17 1.6E-21 155.8 16.9 186 56-265 29-214 (291)
108 3cvr_A Invasion plasmid antige 99.7 4.6E-17 1.6E-21 168.9 17.8 188 77-299 60-254 (571)
109 3cvr_A Invasion plasmid antige 99.7 4.8E-17 1.6E-21 168.8 17.8 186 52-273 60-252 (571)
110 3e6j_A Variable lymphocyte rec 99.7 4.3E-17 1.5E-21 150.3 15.5 152 309-505 21-172 (229)
111 1m9s_A Internalin B; cell inva 99.7 1E-17 3.5E-22 175.8 12.1 190 28-240 22-211 (605)
112 4ezg_A Putative uncharacterize 99.7 6.9E-17 2.4E-21 145.3 12.9 154 47-215 40-194 (197)
113 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.9E-21 167.9 14.9 192 52-267 22-213 (605)
114 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.5E-21 143.5 13.2 151 306-505 43-194 (197)
115 1w8a_A SLIT protein; signaling 99.7 3.5E-16 1.2E-20 139.9 14.1 57 449-505 83-139 (192)
116 3sb4_A Hypothetical leucine ri 99.7 2.4E-16 8.1E-21 154.0 12.8 105 358-499 224-328 (329)
117 1xeu_A Internalin C; cellular 99.7 3.4E-16 1.2E-20 147.4 11.6 122 107-239 64-185 (263)
118 3sb4_A Hypothetical leucine ri 99.6 6.5E-16 2.2E-20 150.9 12.4 288 50-390 24-327 (329)
119 1dce_A Protein (RAB geranylger 99.6 2E-18 6.7E-23 180.2 -7.8 122 337-499 442-567 (567)
120 1xeu_A Internalin C; cellular 99.6 8.5E-16 2.9E-20 144.7 10.4 149 126-288 37-185 (263)
121 4fs7_A Uncharacterized protein 99.6 2.3E-14 7.8E-19 143.6 21.2 333 38-410 58-390 (394)
122 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 131.7 11.4 135 333-505 21-160 (168)
123 4fdw_A Leucine rich hypothetic 99.6 4E-14 1.4E-18 141.2 21.5 268 49-349 111-383 (401)
124 1w8a_A SLIT protein; signaling 99.6 4E-15 1.4E-19 133.0 12.1 122 36-167 17-139 (192)
125 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 128.8 9.9 131 333-501 14-149 (149)
126 4fdw_A Leucine rich hypothetic 99.6 7.5E-14 2.6E-18 139.2 22.4 268 107-396 114-382 (401)
127 2ell_A Acidic leucine-rich nuc 99.6 1E-14 3.4E-19 127.5 13.3 132 76-215 24-160 (168)
128 4b8c_D Glucose-repressible alc 99.6 4.2E-16 1.4E-20 167.8 4.8 158 51-240 173-330 (727)
129 2wfh_A SLIT homolog 2 protein 99.6 2.7E-14 9.3E-19 127.5 13.3 137 7-167 3-139 (193)
130 4fs7_A Uncharacterized protein 99.6 2.3E-13 7.7E-18 136.3 21.1 323 27-389 71-393 (394)
131 1dce_A Protein (RAB geranylger 99.6 6.2E-16 2.1E-20 161.3 2.0 198 47-258 345-567 (567)
132 2wfh_A SLIT homolog 2 protein 99.5 4.6E-14 1.6E-18 126.0 13.8 92 148-239 48-139 (193)
133 4b8c_D Glucose-repressible alc 99.5 2.7E-15 9.1E-20 161.5 6.6 150 307-505 247-404 (727)
134 2o6r_A Variable lymphocyte rec 99.5 4.6E-14 1.6E-18 124.4 12.6 128 339-505 10-137 (177)
135 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7.2E-19 122.7 9.9 127 76-210 17-148 (149)
136 2o6r_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 123.2 13.0 110 51-167 28-137 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.9E-18 121.7 10.4 131 334-505 17-153 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4.1E-18 121.5 9.6 133 46-189 14-151 (176)
139 4gt6_A Cell surface protein; l 99.4 2.2E-11 7.6E-16 121.8 23.4 162 39-213 51-216 (394)
140 3g39_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 113.5 10.4 57 449-505 59-115 (170)
141 4gt6_A Cell surface protein; l 99.4 8.5E-11 2.9E-15 117.5 23.5 128 334-504 263-390 (394)
142 1ds9_A Outer arm dynein; leuci 99.4 9.1E-15 3.1E-19 131.5 -5.4 112 71-193 43-155 (198)
143 2r9u_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 112.1 10.4 57 449-505 62-118 (174)
144 1ds9_A Outer arm dynein; leuci 99.4 1.6E-14 5.4E-19 129.9 -4.3 130 333-505 45-185 (198)
145 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.9E-16 108.4 11.2 116 6-144 4-119 (174)
146 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 108.0 11.0 32 108-139 32-63 (170)
147 3un9_A NLR family member X1; l 99.3 8.1E-13 2.8E-17 130.4 2.5 117 274-397 71-196 (372)
148 3un9_A NLR family member X1; l 99.2 7.9E-13 2.7E-17 130.5 -0.3 164 75-239 71-252 (372)
149 4h09_A Hypothetical leucine ri 99.2 4E-09 1.4E-13 104.8 24.2 314 47-407 42-355 (379)
150 4h09_A Hypothetical leucine ri 99.1 8.4E-09 2.9E-13 102.5 22.1 304 37-386 55-358 (379)
151 2ifg_A High affinity nerve gro 99.1 2.2E-10 7.5E-15 112.5 10.2 104 339-481 11-116 (347)
152 2ifg_A High affinity nerve gro 99.1 2.4E-10 8.2E-15 112.2 10.1 97 38-144 20-117 (347)
153 2ra8_A Uncharacterized protein 98.7 7.7E-09 2.6E-13 101.0 6.0 72 334-405 250-328 (362)
154 2ra8_A Uncharacterized protein 98.6 4.6E-08 1.6E-12 95.5 6.3 65 225-289 251-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 3.7E-08 1.3E-12 86.8 4.0 117 353-505 29-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 3.8E-08 1.3E-12 86.6 1.0 92 44-137 29-128 (185)
157 3rw6_A Nuclear RNA export fact 98.1 8.1E-07 2.8E-11 82.2 1.6 41 357-397 167-209 (267)
158 3rw6_A Nuclear RNA export fact 98.1 4.9E-06 1.7E-10 76.9 6.7 109 47-161 137-258 (267)
159 3e4g_A ATP synthase subunit S, 98.0 5.1E-06 1.8E-10 71.1 4.4 83 107-189 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 2.8E-06 9.7E-11 72.7 1.9 100 42-144 52-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 7.3E-05 2.5E-09 65.2 3.6 120 45-166 35-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00021 7E-09 62.4 4.7 41 464-504 122-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00056 1.9E-08 55.7 6.1 54 33-89 14-68 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.00084 2.9E-08 54.6 5.6 56 448-505 12-68 (130)
165 2lz0_A Uncharacterized protein 76.7 2.7 9.3E-05 31.7 4.1 49 36-86 5-53 (100)
166 2lz0_A Uncharacterized protein 66.4 15 0.00052 27.5 6.2 45 166-211 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-57 Score=498.09 Aligned_cols=531 Identities=30% Similarity=0.424 Sum_probs=349.3
Q ss_pred cCCCCceEecccCcceeeccCceeeeeccCCCCCcccc--------------------------CCccccCCCCCCEEEc
Q 040254 5 PAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRY--------------------------HLPSIGNLTHISHLNL 58 (555)
Q Consensus 5 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------------~~~~~~~l~~L~~L~L 58 (555)
.-|.....+|.|.++.|. . ...+.++++.+.+.|. ++..|..+++|++|+|
T Consensus 31 ~~W~~~~~~C~w~gv~C~-~--~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~L 107 (768)
T 3rgz_A 31 PDWSSNKNPCTFDGVTCR-D--DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107 (768)
T ss_dssp TTCCTTSCGGGSTTEEEE-T--TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEEC
T ss_pred cCCCCCCCCcCCcceEEC-C--CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEEC
Confidence 345545578999999887 2 3566666666666554 2246777777788888
Q ss_pred cCCcCcCcCch-hHHhcCCCCCEEEccCCcCccccCCCC-ccc-------------------------------------
Q 040254 59 SHNHVHGPLPI-NSFHFLTLLEIIDLSYNSLSGELTGLI-PSL------------------------------------- 99 (555)
Q Consensus 59 ~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~~------------------------------------- 99 (555)
++|.+.+.+|. ..+.++++|++|++++|.+.+..+..+ ..+
T Consensus 108 s~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 187 (768)
T 3rgz_A 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187 (768)
T ss_dssp CSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCS
T ss_pred CCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCC
Confidence 87777765654 145667777777777776664444322 000
Q ss_pred ------cccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccccc
Q 040254 100 ------AWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISND 173 (555)
Q Consensus 100 ------~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 173 (555)
.....+++|++|++++|.+.+.+|. ++++++|++|++++|.+.+.+|..+.++++|++|++++|.+++..+..
T Consensus 188 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 266 (768)
T 3rgz_A 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266 (768)
T ss_dssp SEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC
T ss_pred CcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc
Confidence 0001345566666666666654444 666777777777777766666777777777777777777766544433
Q ss_pred ccCCCCCcEEEcccCccccCCCcCccCC-CCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCC
Q 040254 174 IINLTSLLVLELYSKELIGSIPRDIGKL-TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ 252 (555)
Q Consensus 174 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 252 (555)
.+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++...+..+++
T Consensus 267 --~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 267 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344 (768)
T ss_dssp --CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred --ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence 66677777777777766667666554 788888888888777777778888888888888887776676555777777
Q ss_pred CcEEEcccccccccccccccCCC-CCcEEEcccceeccc--------------------------CChhhhhcccc----
Q 040254 253 LETIDLYINMFTGSFLLTLTSCR-LLTALRLACNQLEGQ--------------------------IPPEIIKLKSL---- 301 (555)
Q Consensus 253 L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~--------------------------~~~~l~~l~~l---- 301 (555)
|+.|++++|.+++..+..+..++ +|++|++++|.+.+. +|..+..+..+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 77777777777655555554443 455555555544443 33333322211
Q ss_pred ------------cccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccC
Q 040254 302 ------------ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSG 369 (555)
Q Consensus 302 ------------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~ 369 (555)
.+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|++++.+|.++..+++|++|++++
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-----MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH-----cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC
Confidence 12233444444554444444433333 4567778888888877777777788888888888888
Q ss_pred CccccccCccccCCCCCcEEEccCccCccccchhhhc---cccchhhhccCCCCCCCCCccccCC--C------------
Q 040254 370 NQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSR---LQPLVIEQNKFNRNKPDLPFFLFPN--Q------------ 432 (555)
Q Consensus 370 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~~~~~~~~~~~~l~~~~~~~--~------------ 432 (555)
|++.+.+|..+..+++|++|++++|++++.+|..+.. |+.|++.+|.+....+ ...... .
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip---~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP---AAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC---GGGGTTTTCBCCSTTCSCEEE
T ss_pred CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC---hHHhcccchhhhhcccccccc
Confidence 8888778888888888888888888888777766544 5556666666542211 000000 0
Q ss_pred ----------------------------------cccccccc----------cccCCCCEEEccCccccccCChhccCCC
Q 040254 433 ----------------------------------NSTSHQYN----------RIFGLRPTIFLANNSLSGRIPAETGQLK 468 (555)
Q Consensus 433 ----------------------------------~~~~~~~~----------~~~~~~~~l~L~~n~l~~~~~~~~~~l~ 468 (555)
.......+ ........||+++|++++.+|..++.++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 00000000 0012345788888888888888888888
Q ss_pred CCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC-------------------CCcceecCCCCCCCCCCCCCccCC
Q 040254 469 FLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS-------------------ENNLQGPIPSGGQLHTFPPSSFEG 529 (555)
Q Consensus 469 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-------------------~~~l~~~ip~~~~~~~l~~~~~~g 529 (555)
.|++|+|++|++++.+|..++.+++|+.|||++|+++ +|+++|.||...++.++...+|.|
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 736 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCS
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcC
Confidence 8888888888888888888888888888888888877 578889999999999999999999
Q ss_pred CcCCCCcccCCCCCCCCCCCc
Q 040254 530 NPEFCSDIANRSSTTEPRTTT 550 (555)
Q Consensus 530 Np~~c~~~~~~~~~~~~~~~~ 550 (555)
||.+||.|+. .|....+++-
T Consensus 737 N~~Lcg~~l~-~C~~~~~~~~ 756 (768)
T 3rgz_A 737 NPGLCGYPLP-RCDPSNADGY 756 (768)
T ss_dssp CTEEESTTSC-CCCSCC----
T ss_pred CchhcCCCCc-CCCCCccCCC
Confidence 9999999886 8988777653
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.7e-50 Score=426.64 Aligned_cols=476 Identities=18% Similarity=0.161 Sum_probs=394.7
Q ss_pred ccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCcccccc
Q 040254 23 NHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWN 102 (555)
Q Consensus 23 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 102 (555)
...+..+..+++++|.|++..+.+|.++++|++|+|++|.+. .+++..|.++++|++|++++|++++..|..+..
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---- 103 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSG---- 103 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSS----
T ss_pred CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcc----
Confidence 334567899999999999999999999999999999999998 676678999999999999999999887777764
Q ss_pred CCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCc-
Q 040254 103 HSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLL- 181 (555)
Q Consensus 103 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~- 181 (555)
+++|++|++++|.+++..+..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+
T Consensus 104 --l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 104 --PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp --CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred --cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 45999999999999976678899999999999999988774434555699999999999999998888899999999
Q ss_pred -EEEcccCccccCCCcCccCC---------------------------------------------------CCCCeeeC
Q 040254 182 -VLELYSKELIGSIPRDIGKL---------------------------------------------------TNLKYLLL 209 (555)
Q Consensus 182 -~L~L~~n~~~~~~~~~l~~l---------------------------------------------------~~L~~L~L 209 (555)
.|++++|.+.+..+..+... .+|+.|++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 89999999887766554321 16778888
Q ss_pred ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254 210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289 (555)
Q Consensus 210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 289 (555)
++|.+.+..+..+..+++|++|++++|.+. .++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC-SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccC-CCC-hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 888888777777899999999999999988 666 357889999999999999988878888999999999999998876
Q ss_pred cCChhhhhcccccccCCCCCcEEEeccccCCCCC--CccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEc
Q 040254 290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEAT--PNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLL 367 (555)
Q Consensus 290 ~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 367 (555)
.++.. .+..+++|+.+++++|.+.... +..+ ..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 340 ~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 340 ELGTG-------CLENLENLRELDLSHDDIETSDCCNLQL-----RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp BCCSS-------TTTTCTTCCEEECCSSCCCEEEESTTTT-----TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred ccchh-------hhhccCcCCEEECCCCccccccCcchhc-----ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 55443 2556789999999999987764 3333 67889999999999998888889999999999999
Q ss_pred cCCccccccCc-cccCCCCCcEEEccCccCccccchh---hhccccchhhhccCCCCCCCCCccccCCCccccccccccc
Q 040254 368 SGNQITGSIPG-WFGNLPSLFYFALSQNNISGEFPKE---LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF 443 (555)
Q Consensus 368 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 443 (555)
++|++.+..+. .+..+++|++|++++|.+.+..+.. +.+|+.|++.+|.+.......+ ......
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------~~~~~l 475 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT------------NSLQTL 475 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS------------CGGGGC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc------------hhhccC
Confidence 99999876554 4889999999999999998776655 4567778888887643110000 001112
Q ss_pred CCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-CCCCCC
Q 040254 444 GLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-GQLHTF 522 (555)
Q Consensus 444 ~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~~~l 522 (555)
...+.|++++|++++..|..+..+++|++|++++|++++..|+.+..+++| +|++++|+++ +..|.. ..+..+
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~-----~~~~~~~~~l~~L 549 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-----IILPSLLPILSQQ 549 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC-----CCCGGGHHHHHTS
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc-----ccCHhhcccCCCC
Confidence 334579999999999889999999999999999999999999999999999 9999999997 344432 346678
Q ss_pred CCCccCCCcCCCCcc
Q 040254 523 PPSSFEGNPEFCSDI 537 (555)
Q Consensus 523 ~~~~~~gNp~~c~~~ 537 (555)
..++++||||.|+++
T Consensus 550 ~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 550 RTINLRQNPLDCTCS 564 (606)
T ss_dssp SEEECTTCCEECSGG
T ss_pred CEEeCCCCCccccCC
Confidence 899999999999876
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-49 Score=431.38 Aligned_cols=454 Identities=28% Similarity=0.445 Sum_probs=358.5
Q ss_pred eeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCC
Q 040254 27 FNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC 106 (555)
Q Consensus 27 ~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 106 (555)
..+..+++++|.+++.+|. |.++++|++|++++|.+.+.+| ..|..+++|++|++++|++++..|.. .++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~ 269 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPL--------PLK 269 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCC--------CCT
T ss_pred CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCcc--------ccC
Confidence 4566677777777777776 8888888888888888775444 45677888888888888877654432 345
Q ss_pred CccEEEccCCcCCccCCccccCC-CCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccc-cccCCCCCcEEE
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNC-SRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN-DIINLTSLLVLE 184 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~ 184 (555)
+|++|++++|.+++.+|..+... ++|++|++++|.+.+.+|..+.++++|++|++++|.+++..+. .+..+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 88888888888887777777664 8888888888888888888888888888888888888755554 488888888888
Q ss_pred cccCccccCCCcCccCCC-CCCeeeCccCcCcccCCccccC--CCCCCEEECcCccCccccCcccccCCCCCcEEEcccc
Q 040254 185 LYSKELIGSIPRDIGKLT-NLKYLLLYRNNLSGSLPSSMMN--CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYIN 261 (555)
Q Consensus 185 L~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~--~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 261 (555)
+++|.+.+.+|..+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+.+.++ ..+..+++|+.|++++|
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFN 428 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-GGGGGCTTCCEEECCSS
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-HHHhcCCCCCEEECcCC
Confidence 888888878888777776 8888888888888777766665 7788889998888876665 56788888999999998
Q ss_pred cccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEE
Q 040254 262 MFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAV 341 (555)
Q Consensus 262 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L 341 (555)
.+++..+..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..+..+ ..+++|++|
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--------~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L 495 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--------YVKTLETLILDFNDLTGEIPSGL-----SNCTNLNWI 495 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEE
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc--------CCCCceEEEecCCcccCcCCHHH-----hcCCCCCEE
Confidence 88888888888888999999999888877777654 45689999999999998877665 778999999
Q ss_pred EccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchh---------
Q 040254 342 SLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVI--------- 412 (555)
Q Consensus 342 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--------- 412 (555)
++++|++++.+|.+++.+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+.....+..
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999888876544221110
Q ss_pred ----------------------------------------hhccCCCCCCCCCccccCCCcccccccccc----------
Q 040254 413 ----------------------------------------EQNKFNRNKPDLPFFLFPNQNSTSHQYNRI---------- 442 (555)
Q Consensus 413 ----------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------- 442 (555)
..+.+.... ...+.....+..++++.+.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~-~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT-SPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC-CCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccC-chhhhccccccEEECcCCcccccCCHHHhc
Confidence 001100000 00111122333333333322
Q ss_pred cCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 443 FGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 443 ~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
....+.|++++|++++.+|..++.+++|++|||++|++++.+|..+..+++|++|||++|+++
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 233458999999999999999999999999999999999999999999999999999999997
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-48 Score=421.40 Aligned_cols=511 Identities=19% Similarity=0.180 Sum_probs=320.5
Q ss_pred CceEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc
Q 040254 9 GQIISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS 87 (555)
Q Consensus 9 ~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 87 (555)
+..+.|..... .++...+..+..+++++|.+++..+..|.++++|++|++++|.+. .+++..|.++++|++|++++|+
T Consensus 6 ~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSC
T ss_pred CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCc
Confidence 56788877665 344444568899999999999988889999999999999999998 5666788899999999999999
Q ss_pred CccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc
Q 040254 88 LSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS 167 (555)
Q Consensus 88 i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~ 167 (555)
++...+..|.. +++|++|++++|.+++..+..|+++++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus 85 l~~l~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 85 LSQLSDKTFAF------CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CCCCCTTTTTT------CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred cCccChhhhcc------CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 98766555653 458999999999988766678889999999999988888777777888888888888888887
Q ss_pred cccccccc--CCCCCcEEEcccCccccCCCcCccCC---------------------------CCCCeeeCccCcCcccC
Q 040254 168 GFISNDII--NLTSLLVLELYSKELIGSIPRDIGKL---------------------------TNLKYLLLYRNNLSGSL 218 (555)
Q Consensus 168 ~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~ 218 (555)
+..+..+. .+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 76655443 45677777777777665555443322 23344444444444333
Q ss_pred CccccCCCC--CCEEECcCccCccccCcccccCCCCCcEEEccccccccccccc--------------------------
Q 040254 219 PSSMMNCTN--LKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLT-------------------------- 270 (555)
Q Consensus 219 ~~~l~~~~~--L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-------------------------- 270 (555)
+.++..++. |++|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred hhHhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 334433322 4444444444442 22233444444444444444444333333
Q ss_pred -------ccCCCCCcEEEcccceecccCChhhhh---cccccccCC-----------------CCCcEEEeccccCCCCC
Q 040254 271 -------LTSCRLLTALRLACNQLEGQIPPEIIK---LKSLILMGC-----------------KNLNVLFLTMNFMNEAT 323 (555)
Q Consensus 271 -------l~~~~~L~~L~l~~n~~~~~~~~~l~~---l~~l~~~~~-----------------~~L~~L~l~~n~~~~~~ 323 (555)
+..+++|++|++++|.+.+..+..+.. ++.+.++++ ++|+.+++++|.+....
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence 344455555555555554433333222 112222111 24445555555554443
Q ss_pred CccccccccCCCCCccEEEccCcccccccc-hhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc--ccc
Q 040254 324 PNYDQNKISDGFQNLRAVSLAGCQLTGQVP-LWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS--GEF 400 (555)
Q Consensus 324 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~ 400 (555)
+..+ ..+++|+.|++++|.+.+.++ ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+. +..
T Consensus 398 ~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 398 SDAF-----SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp TTTT-----TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred hhhh-----hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 3333 445556666666665554333 45555566666666666555544555555555555555555543 233
Q ss_pred chh---hhccccchhhhccCCCCCCCCCccccCCCcccccccccc------------------cCCCCEEEccCcccccc
Q 040254 401 PKE---LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRI------------------FGLRPTIFLANNSLSGR 459 (555)
Q Consensus 401 ~~~---~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~l~L~~n~l~~~ 459 (555)
|.. +.+++.|++++|.+...... .+...+.++.+.+..+.+ ....+.|++++|+++..
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CcccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 332 23455555566555443321 111222233332222221 12345899999999855
Q ss_pred CChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-C-CCCCCCCCccCCCcCCCCcc
Q 040254 460 IPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-G-QLHTFPPSSFEGNPEFCSDI 537 (555)
Q Consensus 460 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~-~~~~l~~~~~~gNp~~c~~~ 537 (555)
.+..|.++++|++|++++|++++..+..|..+++|+.|+|++|+|+ +..|.. . .+..+..++++||||.|++.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT-----SVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC-----BCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC-----ccChhHhcccccccCEEEccCCCcccCCc
Confidence 5556888999999999999999777777888899999999999887 222221 1 45678889999999999986
Q ss_pred c
Q 040254 538 A 538 (555)
Q Consensus 538 ~ 538 (555)
.
T Consensus 627 ~ 627 (680)
T 1ziw_A 627 S 627 (680)
T ss_dssp C
T ss_pred c
Confidence 4
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.2e-48 Score=411.87 Aligned_cols=475 Identities=18% Similarity=0.143 Sum_probs=364.6
Q ss_pred eEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCc
Q 040254 11 IISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS 89 (555)
Q Consensus 11 ~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~ 89 (555)
.+.|++... .++...+..+..+++++|.+++..+..|.++++|++|++++|.+. .+++..|.++++|++|++++|+++
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred ceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccc
Confidence 455655444 444445678899999999999999999999999999999999998 677778999999999999999999
Q ss_pred cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeecccCcc
Q 040254 90 GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNKLSG 168 (555)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~ 168 (555)
+..|..|.. +++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++
T Consensus 94 ~~~p~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 94 SFSPGSFSG------LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCTTSSTT------CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccChhhcCC------cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 887877764 4599999999999997666889999999999999998876 579999999999999999999999
Q ss_pred cccccccCCCCCc----EEEcccCccccCCCcCccCCCCCCeeeCccCcCc-----------------------------
Q 040254 169 FISNDIINLTSLL----VLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS----------------------------- 215 (555)
Q Consensus 169 ~~~~~~~~l~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~----------------------------- 215 (555)
..+..+..+++|+ +|++++|.+....+..+... +|+.|++++|.+.
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 8888777766654 79999998876666555544 7888888877653
Q ss_pred -----------------------------ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254 216 -----------------------------GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266 (555)
Q Consensus 216 -----------------------------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 266 (555)
+..+. +..+++|++|++++|.+. .++ .+..+++|+.|++++|.+. .
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~-~ 321 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK-Q 321 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS-S
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc-c
Confidence 11222 455677888888888775 455 5777788888888888884 3
Q ss_pred ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCC--CccccccccCCCCCccEEEcc
Q 040254 267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEAT--PNYDQNKISDGFQNLRAVSLA 344 (555)
Q Consensus 267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~L~~L~l~ 344 (555)
.+ .+ .+++|++|++++|+..+.. .+..+++|+.+++++|.++... +..+ ..+++|++|+++
T Consensus 322 lp-~~-~l~~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~ls~n~l~~~~~~~~~~-----~~~~~L~~L~L~ 384 (606)
T 3vq2_A 322 FP-TL-DLPFLKSLTLTMNKGSISF----------KKVALPSLSYLDLSRNALSFSGCCSYSD-----LGTNSLRHLDLS 384 (606)
T ss_dssp CC-CC-CCSSCCEEEEESCSSCEEC----------CCCCCTTCCEEECCSSCEEEEEECCHHH-----HCCSCCCEEECC
T ss_pred cc-cC-CCCccceeeccCCcCccch----------hhccCCCCCEEECcCCccCCCcchhhhh-----ccCCcccEeECC
Confidence 44 34 7788888888887543221 2446677888888887776542 2222 566778888888
Q ss_pred CcccccccchhhhCCCCCcEEEccCCccccccC-ccccCCCCCcEEEccCccCccccchhh---hccccchhhhccCCCC
Q 040254 345 GCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQNNISGEFPKEL---SRLQPLVIEQNKFNRN 420 (555)
Q Consensus 345 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~~~~~~~~~ 420 (555)
+|.+++ ++..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+++..|..+ .+|+.|++.+|.+...
T Consensus 385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp SCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 887763 55677777788888888888776655 567777888888888888776665544 4556666666655431
Q ss_pred --CCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeee
Q 040254 421 --KPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLD 498 (555)
Q Consensus 421 --~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 498 (555)
+..+ ......+.|++++|++++..|..+.++++|++|++++|++++.+|..+..+++|++|+
T Consensus 464 ~~~~~~----------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 464 TLSNVF----------------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp EECSCC----------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred chHHhh----------------ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 1110 0112234799999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceecCCCC-CCCC-CCCCCccCCCcCCCCccc
Q 040254 499 LSKNHLSENNLQGPIPSG-GQLH-TFPPSSFEGNPEFCSDIA 538 (555)
Q Consensus 499 Ls~N~l~~~~l~~~ip~~-~~~~-~l~~~~~~gNp~~c~~~~ 538 (555)
|++|+|+ .+|.. ..+. ++..++++||||.|++++
T Consensus 528 l~~N~l~------~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 528 CSFNRIE------TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CTTSCCC------CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCcCc------ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999997 34443 2333 478889999999998865
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=422.04 Aligned_cols=484 Identities=19% Similarity=0.203 Sum_probs=341.1
Q ss_pred CCceEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC
Q 040254 8 GGQIISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN 86 (555)
Q Consensus 8 ~~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 86 (555)
.|..+.|+.... .++. .+..+..+++++|.|++..+.+|.++++|++|+|++|...+.+++..|.++++|++|+|++|
T Consensus 5 ~~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 5 DGRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TTEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 367788877766 4454 67889999999999999999999999999999999997666888888999999999999999
Q ss_pred cCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc--ccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeec
Q 040254 87 SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR--LGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHF 163 (555)
Q Consensus 87 ~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~ 163 (555)
.+++..|+.|.. +++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..|.++++|++|++++
T Consensus 84 ~l~~~~p~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 84 KIYFLHPDAFQG------LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CCCEECTTSSCS------CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred cCcccCHhHccC------CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 999888888765 449999999999998755554 8999999999999999877654 6799999999999999
Q ss_pred ccCcccccccccCC--CCCcEEEcccCccccCCCcCccCCCC------CCeeeCccCcCcccCCccccC-----------
Q 040254 164 NKLSGFISNDIINL--TSLLVLELYSKELIGSIPRDIGKLTN------LKYLLLYRNNLSGSLPSSMMN----------- 224 (555)
Q Consensus 164 n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~----------- 224 (555)
|.+++..+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+..+..
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 99998888888877 88999999999988877766665554 899999988765443332221
Q ss_pred ---------------------------CCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCC
Q 040254 225 ---------------------------CTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLL 277 (555)
Q Consensus 225 ---------------------------~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 277 (555)
.++|++|++++|.+.+ +....+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 1467777777776663 333556677777777777777776666667777777
Q ss_pred cEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhh
Q 040254 278 TALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS 357 (555)
Q Consensus 278 ~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 357 (555)
++|++++|.+.+..+.. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+++ + .
T Consensus 317 ~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~-i----~ 378 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSN--------FYGLPKVAYIDLQKNHIAIIQDQTF-----KFLEKLQTLDLRDNALTT-I----H 378 (844)
T ss_dssp CEEEEESCCCSCCCSCS--------CSSCTTCCEEECCSCCCCCCCSSCS-----CSCCCCCEEEEETCCSCC-C----S
T ss_pred CEEECCCCCCCccCHHH--------hcCCCCCCEEECCCCCCCccChhhh-----cCCCCCCEEECCCCCCCc-c----c
Confidence 77777777766443433 3344566666666666665554433 555666666666666552 1 1
Q ss_pred CCCCCcEEEccCCccccccCcc----------------------ccCCCCCcEEEccCccCccc----cchhhhccccch
Q 040254 358 KLTKLEVLLLSGNQITGSIPGW----------------------FGNLPSLFYFALSQNNISGE----FPKELSRLQPLV 411 (555)
Q Consensus 358 ~l~~L~~L~L~~n~l~~~~~~~----------------------~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~ 411 (555)
.+++|+.|++++|++. .+|.. +..+++|++|++++|++++. .+....+|+.|+
T Consensus 379 ~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~ 457 (844)
T 3j0a_A 379 FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457 (844)
T ss_dssp SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE
T ss_pred CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccccc
Confidence 2445555555555554 22221 22444555555555554421 112234444445
Q ss_pred hhhccCCCCCCC-CCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhC
Q 040254 412 IEQNKFNRNKPD-LPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQ 490 (555)
Q Consensus 412 ~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 490 (555)
+++|.+...+.. ..... +. .....+.|+|++|++++..|..|.++++|++|+|++|+|++..+..+.
T Consensus 458 Ls~N~l~~~~~~~~~~~~----------~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 458 LGENMLQLAWETELCWDV----------FE-GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp EESCCCSSSCCSCCCSSC----------SS-CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred CCCCccccccccccchhh----------hc-CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-
Confidence 444444322210 00000 00 012223688888888888888888888899999999988876666555
Q ss_pred CccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCccc
Q 040254 491 LTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIA 538 (555)
Q Consensus 491 l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~~ 538 (555)
++|+.|||++|+|+ +.+|. .+..+..++++||||.|++.+
T Consensus 526 -~~L~~L~Ls~N~l~-----~~~~~--~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 526 -ANLEILDISRNQLL-----APNPD--VFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp -SCCCEEEEEEECCC-----CCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred -ccccEEECCCCcCC-----CCChh--HhCCcCEEEecCCCccccccc
Confidence 78889999988886 55564 366788899999999997653
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=397.08 Aligned_cols=481 Identities=18% Similarity=0.159 Sum_probs=333.0
Q ss_pred CCceEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC
Q 040254 8 GGQIISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN 86 (555)
Q Consensus 8 ~~~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 86 (555)
++..+.|...+. ..+...+..+..+++++|.+++..+.+|..+++|++|++++|.+. .+++..|.++++|++|++++|
T Consensus 8 ~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred CCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCC
Confidence 456678877665 444455667889999999999999999999999999999999998 788888999999999999999
Q ss_pred cCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeeccc
Q 040254 87 SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNK 165 (555)
Q Consensus 87 ~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~ 165 (555)
++++..+..|.. +++|++|++++|.+++..+..++++++|++|++++|.+.. .+|..+.++++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 87 PIQSLALGAFSG------LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCCEECTTTTTT------CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cCCccCHhhhcC------ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 999877777764 4599999999999997555579999999999999998876 478999999999999999999
Q ss_pred CcccccccccCCCCC----cEEEcccCccccCCCcCccCCCCCCeeeCccCcCcc-cCCccccCCCC-------------
Q 040254 166 LSGFISNDIINLTSL----LVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSG-SLPSSMMNCTN------------- 227 (555)
Q Consensus 166 i~~~~~~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~~~~------------- 227 (555)
+++..+..+..+++| +.|++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 999888888888888 899999999988888777665 79999988873210 01111111111
Q ss_pred -------------------CCEEECcCc-cCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEccccee
Q 040254 228 -------------------LKTLNLMGN-LFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQL 287 (555)
Q Consensus 228 -------------------L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 287 (555)
++.+++.++ .+.+..+ ..+..+++|+.|++++|.+.+ .+..+..+ +|++|++++|.+
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~ 316 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKF 316 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBC
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcc
Confidence 222333332 2221122 345555666666666666653 34444455 666666666655
Q ss_pred cccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccccc--chhhhCCCCCcEE
Q 040254 288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQV--PLWLSKLTKLEVL 365 (555)
Q Consensus 288 ~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L 365 (555)
. .+|. ..+++|+.+++++|.+....+. ..+++|++|++++|.+++.. +..+..+++|++|
T Consensus 317 ~-~l~~----------~~l~~L~~L~l~~n~~~~~~~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 317 G-QFPT----------LKLKSLKRLTFTSNKGGNAFSE-------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp S-SCCB----------CBCSSCCEEEEESCBSCCBCCC-------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred c-ccCc----------ccccccCEEeCcCCcccccccc-------ccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence 5 2222 1234556666666555443322 33455666666666555332 4555556666666
Q ss_pred EccCCccccccCccccCCCCCcEEEccCccCccccc----hhhhccccchhhhccCCCCCCCCCccccCCCccccccccc
Q 040254 366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP----KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR 441 (555)
Q Consensus 366 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 441 (555)
++++|++.+..+. +..+++|++|++++|.+.+..+ ..+.+++.|++++|.+....... + .
T Consensus 379 ~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--------------~ 442 (570)
T 2z63_A 379 DLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-F--------------N 442 (570)
T ss_dssp ECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT-T--------------T
T ss_pred ECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh-h--------------h
Confidence 6666665533332 5556666666666665554332 22344455555554432211100 0 0
Q ss_pred ccCCCCEEEccCcccc-ccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-CCC
Q 040254 442 IFGLRPTIFLANNSLS-GRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-GQL 519 (555)
Q Consensus 442 ~~~~~~~l~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~ 519 (555)
.....+.|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ +..|.. ..+
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l 517 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-----SVPDGIFDRL 517 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-----CCCTTTTTTC
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC-----CCCHHHhhcc
Confidence 0112236999999998 578888999999999999999999888999999999999999999987 333332 456
Q ss_pred CCCCCCccCCCcCCCCccc
Q 040254 520 HTFPPSSFEGNPEFCSDIA 538 (555)
Q Consensus 520 ~~l~~~~~~gNp~~c~~~~ 538 (555)
..+..+++++||+.|+++.
T Consensus 518 ~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 518 TSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECCSSCBCCCTTT
T ss_pred cCCcEEEecCCcccCCCcc
Confidence 7888899999999998753
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-45 Score=392.59 Aligned_cols=444 Identities=19% Similarity=0.153 Sum_probs=367.1
Q ss_pred ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254 26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105 (555)
Q Consensus 26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 105 (555)
...+..+++++|.+++..|..|.++++|++|+|++|.+. .+++..|..+++|++|++++|++++..+..+. .+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~------~l 128 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLH------NQ 128 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCT------TC
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhc------cC
Confidence 446788999999999999999999999999999999998 56666799999999999999999976565554 45
Q ss_pred CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCC--eeEeecccCcccccccccCC------
Q 040254 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLE--EPSLHFNKLSGFISNDIINL------ 177 (555)
Q Consensus 106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~--~L~l~~n~i~~~~~~~~~~l------ 177 (555)
++|++|++++|.+++.....+..+++|++|++++|.+....+..+..+++|+ +|++++|.+++..+..+...
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 5999999999999974444555699999999999999888888999999999 89999999887766544321
Q ss_pred ---------------------------------------------CCCcEEEcccCccccCCCcCccCCCCCCeeeCccC
Q 040254 178 ---------------------------------------------TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRN 212 (555)
Q Consensus 178 ---------------------------------------------~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n 212 (555)
.+|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 16788888888888777778999999999999999
Q ss_pred cCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc-ccccccCCCCCcEEEcccceecccC
Q 040254 213 NLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS-FLLTLTSCRLLTALRLACNQLEGQI 291 (555)
Q Consensus 213 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~ 291 (555)
.++ .+|..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+. ....+..+++|++|++++|.+.+..
T Consensus 289 ~l~-~lp~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 289 HLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp CCS-CCCSSCCSCTTCCEEECTTCCCSB-GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred ccC-CCChhhcccccCCEEECccCCcCc-CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 998 778889999999999999999884 4446788899999999999988754 3455888999999999999887433
Q ss_pred ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccc-hhhhCCCCCcEEEccCC
Q 040254 292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP-LWLSKLTKLEVLLLSGN 370 (555)
Q Consensus 292 ~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~n 370 (555)
. ....+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+.+..+ .++..+++|++|++++|
T Consensus 367 ~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 367 C------CNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp E------STTTTTTCTTCCEEECCSCSCEEECTTTT-----TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred C------cchhcccCCCCCEEECCCCcCCcCCHHHh-----cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 0 01235667899999999999887766655 678899999999999886554 45888999999999999
Q ss_pred ccccccCccccCCCCCcEEEccCccCccc-c-----chhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccC
Q 040254 371 QITGSIPGWFGNLPSLFYFALSQNNISGE-F-----PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFG 444 (555)
Q Consensus 371 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~-----~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 444 (555)
.+.+..+..+..+++|++|++++|++++. + ...+.+|+.|++++|.+....+. .+. ...
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~--------------~l~ 500 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFT--------------SLK 500 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTT--------------TCT
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-hhc--------------ccc
Confidence 99988888899999999999999998752 1 23456778888888876543221 000 112
Q ss_pred CCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 445 LRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 445 ~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
..+.|++++|++++..|..+..++.| +|++++|++++.+|..+..+++|++|++++|+++
T Consensus 501 ~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 501 MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 23479999999999999999999999 9999999999999999999999999999999997
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6e-44 Score=386.16 Aligned_cols=478 Identities=20% Similarity=0.210 Sum_probs=334.6
Q ss_pred cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254 33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD 112 (555)
Q Consensus 33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ 112 (555)
++++++++ .+|..+. +++++|+|++|.+. .++...|.++++|++|++++|.+++..+..+.. +++|++|+
T Consensus 10 ~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~ 79 (680)
T 1ziw_A 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQK------LPMLKVLN 79 (680)
T ss_dssp ECCSSCCS-SCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH------CTTCCEEE
T ss_pred ECCCCCcc-ccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhc------ccCcCEEE
Confidence 34445554 4666664 79999999999998 788888999999999999999999877766654 45999999
Q ss_pred ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254 113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG 192 (555)
Q Consensus 113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~ 192 (555)
+++|.++...+.+|+++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+
T Consensus 80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 99999997555679999999999999999887777889999999999999999999888889999999999999999987
Q ss_pred CCCcCcc--CCCCCCeeeCccCcCcccCCccccCC---------------------------CCCCEEECcCccCccccC
Q 040254 193 SIPRDIG--KLTNLKYLLLYRNNLSGSLPSSMMNC---------------------------TNLKTLNLMGNLFAGNLS 243 (555)
Q Consensus 193 ~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~~---------------------------~~L~~L~l~~n~l~~~~~ 243 (555)
..+..+. .+++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence 7665543 56899999999999987766655543 567778888887774433
Q ss_pred cccccCCC--CCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhccc---------------------
Q 040254 244 AYNFSVLS--QLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKS--------------------- 300 (555)
Q Consensus 244 ~~~~~~l~--~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~--------------------- 300 (555)
..+..++ +|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+..
T Consensus 240 -~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 240 -TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp -TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred -hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence 4566664 4999999999999888888999999999999999998776655543322
Q ss_pred ----ccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccC----------------------------ccc
Q 040254 301 ----LILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG----------------------------CQL 348 (555)
Q Consensus 301 ----l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------------------------n~i 348 (555)
..+..+++|+.+++++|.+.+..+..+ ..+++|++|++++ |++
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-----TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBCCCCTTTT-----TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred ccChhhcccCCCCCEEECCCCccCCCChhHh-----ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 135567889999999998887765544 4444555555544 444
Q ss_pred ccccchhhhCCCCCcEEEccCCccccccC-ccccCCCCCcEEEccCccCccccchh---hhccccchhhhccCCCCCC-C
Q 040254 349 TGQVPLWLSKLTKLEVLLLSGNQITGSIP-GWFGNLPSLFYFALSQNNISGEFPKE---LSRLQPLVIEQNKFNRNKP-D 423 (555)
Q Consensus 349 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~~~~~~~~~~~-~ 423 (555)
++..+.++..+++|++|++++|++.+.++ ..+..+++|++|++++|++.+..+.. +..++.|.+.+|.+..... .
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 44444555555555555555555554333 44555555555555555554433332 2344445555544432110 0
Q ss_pred CCccccCCCccccccccccc----------CCCCEEEccCccccccCC--------hhccCCCCCCeeeCCCccceeecc
Q 040254 424 LPFFLFPNQNSTSHQYNRIF----------GLRPTIFLANNSLSGRIP--------AETGQLKFLNVLDLGNNNFAGSIP 485 (555)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~----------~~~~~l~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~ 485 (555)
-.+...+.++.+++..+.+. ...+.|++++|++++..+ ..+.++++|++|+|++|+++...+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 11122233333333222211 223477777777765322 225677777777777777774444
Q ss_pred hhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCCCCccCCCcC
Q 040254 486 NQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFPPSSFEGNPE 532 (555)
Q Consensus 486 ~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~~~~~~gNp~ 532 (555)
..|..+++|++|++++|+|+ .+|.. ..+..+..+++++|..
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~------~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLN------TLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECTTSCC
T ss_pred HHcccccCcceeECCCCCCC------cCCHhHhCCCCCCCEEECCCCcC
Confidence 56777788888888888776 34433 3456677777887743
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-46 Score=400.73 Aligned_cols=441 Identities=18% Similarity=0.168 Sum_probs=226.2
Q ss_pred CCCceEeccc---CcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcC------cC------cCchhH
Q 040254 7 AGGQIISCHT---EKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHV------HG------PLPINS 71 (555)
Q Consensus 7 ~~~~~~~c~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~------~~------~i~~~~ 71 (555)
|+....+|.| .++.|... ...+.+++++++++|.+|++|+++++|++|+|++|.+ .+ .+|...
T Consensus 60 W~~~~~~c~w~~~~GV~C~~~--~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~ 137 (636)
T 4eco_A 60 WNFNKELDMWGAQPGVSLNSN--GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137 (636)
T ss_dssp CCCSSCGGGTTCCTTEEECTT--CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH
T ss_pred CCCCCCcccccCCCCeEEcCC--CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH
Confidence 5555567888 78888654 4688999999999999999999999999999999975 22 334332
Q ss_pred HhcCCCCCEEEccCCcCccccCCCCcccc--------------------------------------ccCCCCCccEEEc
Q 040254 72 FHFLTLLEIIDLSYNSLSGELTGLIPSLA--------------------------------------WNHSFCSMRLLDF 113 (555)
Q Consensus 72 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--------------------------------------~~~~~~~L~~L~l 113 (555)
+..|+ ++++.+.+.+..+..+.... ..+.+++|++|++
T Consensus 138 ---~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~L 213 (636)
T 4eco_A 138 ---KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYM 213 (636)
T ss_dssp ---HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEE
T ss_pred ---HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEEC
Confidence 22333 44444433332222221100 0012335555555
Q ss_pred cCCcCCcc-----------------CCcccc--CCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc-Ccc-cccc
Q 040254 114 SYNDFSSQ-----------------VPPRLG--NCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK-LSG-FISN 172 (555)
Q Consensus 114 s~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~ 172 (555)
++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ ..|.
T Consensus 214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp ESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred cCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence 55555543 455544 55555555555555555555555555555555555554 444 3344
Q ss_pred cccCC------CCCcEEEcccCccccCCCc--CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCc
Q 040254 173 DIINL------TSLLVLELYSKELIGSIPR--DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSA 244 (555)
Q Consensus 173 ~~~~l------~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 244 (555)
.+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .++
T Consensus 294 ~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp- 369 (636)
T 4eco_A 294 DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP- 369 (636)
T ss_dssp HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECC-
T ss_pred HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-ccc-
Confidence 44433 55555555555554 4444 45555555555555555554444 4555555555555555554 333
Q ss_pred ccccCCCC-CcEEEcccccccccccccccCCC--CCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCC
Q 040254 245 YNFSVLSQ-LETIDLYINMFTGSFLLTLTSCR--LLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNE 321 (555)
Q Consensus 245 ~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~ 321 (555)
..+..+++ |++|++++|.++ ..+..+.... +|++|++++|.+.+..|..+.... .....+.+|+.|++++|.++.
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~-~~~~~~~~L~~L~Ls~N~l~~ 447 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD-PTPFKGINVSSINLSNNQISK 447 (636)
T ss_dssp TTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC-SSCCCCCCEEEEECCSSCCCS
T ss_pred HhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc-cccccCCCCCEEECcCCccCc
Confidence 22444444 555555555554 2333333322 455555555555544443332110 001123345555555555554
Q ss_pred CCCccccccccCCCCCccEEEccCcccccccchhhhCCC-------CCcEEEccCCccccccCcccc--CCCCCcEEEcc
Q 040254 322 ATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLT-------KLEVLLLSGNQITGSIPGWFG--NLPSLFYFALS 392 (555)
Q Consensus 322 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~ 392 (555)
.+...+ ..+++|++|++++|+++...+..+.... +|++|++++|+++ .+|..+. .+++|++|+|+
T Consensus 448 lp~~~~-----~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 448 FPKELF-----STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp CCTHHH-----HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred CCHHHH-----ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence 333222 3344555555555555422222222111 4555555555555 3444443 45555555555
Q ss_pred CccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEc------cCccccccCChhccC
Q 040254 393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFL------ANNSLSGRIPAETGQ 466 (555)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L------~~n~l~~~~~~~~~~ 466 (555)
+|++++ +|..+.+++.|. .|++ ++|++.+.+|..+..
T Consensus 522 ~N~l~~-ip~~~~~l~~L~------------------------------------~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 522 YNSFSK-FPTQPLNSSTLK------------------------------------GFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp SSCCSS-CCCGGGGCSSCC------------------------------------EEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred CCCCCC-cChhhhcCCCCC------------------------------------EEECCCCcccccCcccccChHHHhc
Confidence 555553 444444444433 2444 345555555555656
Q ss_pred CCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 467 LKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 467 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
+++|++|+|++|+++ .+|..+. ++|++|||++|+++
T Consensus 565 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 565 CPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 666666666666663 4454433 45666666666555
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-44 Score=379.49 Aligned_cols=445 Identities=17% Similarity=0.144 Sum_probs=241.1
Q ss_pred CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC
Q 040254 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCS 130 (555)
Q Consensus 51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 130 (555)
++|++|++++|.++ .+++..|..+++|++|++++|++++..++.|.. +++|++|++++|.+++..+..+++++
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYS------LGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTT------CTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccc------cccCCEEECCCCccCccCHHHhccCC
Confidence 34555555555544 333334444555555555555554444333332 22455555555555443333344555
Q ss_pred CCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeeccc-CcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeee
Q 040254 131 RLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNK-LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL 208 (555)
Q Consensus 131 ~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 208 (555)
+|++|++++|.+.. ..|..+.++++|++|++++|. +..+.+..+.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 55555555444433 223344444555555555544 2333333444455555555555555444444444455555555
Q ss_pred CccCcCcccCCccccCCCCCCEEECcCccCcccc--CcccccCCCCCcEEEccccccccccc----ccccCCCCCcEEEc
Q 040254 209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNL--SAYNFSVLSQLETIDLYINMFTGSFL----LTLTSCRLLTALRL 282 (555)
Q Consensus 209 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l 282 (555)
++.|.+.......+..+++|++|++++|.+.+.. +......++.|+.|++++|.+++..+ ..+..++.|+.+++
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 5544443211111233444555555554444210 11112233444445544444433211 12233344444444
Q ss_pred ccceecccCC---------hhhhhccccc------------------ccCCCCCcEEEeccccCCCCCCccccccccCCC
Q 040254 283 ACNQLEGQIP---------PEIIKLKSLI------------------LMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF 335 (555)
Q Consensus 283 ~~n~~~~~~~---------~~l~~l~~l~------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 335 (555)
++|.+.+... ..+..++.+. +....+|+.+++++|.+...+...+ ..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~-----~~l 333 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS-----QHL 333 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH-----HHC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH-----hcC
Confidence 4444332100 0001111110 1123467777777777665443322 356
Q ss_pred CCccEEEccCcccccccc---hhhhCCCCCcEEEccCCccccccC--ccccCCCCCcEEEccCccCccccchh---hhcc
Q 040254 336 QNLRAVSLAGCQLTGQVP---LWLSKLTKLEVLLLSGNQITGSIP--GWFGNLPSLFYFALSQNNISGEFPKE---LSRL 407 (555)
Q Consensus 336 ~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l 407 (555)
++|++|++++|++++..+ ..++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|.. +.++
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L 412 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence 777777777777765443 235667777777777777764322 34667777777777777776 44433 3456
Q ss_pred ccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchh
Q 040254 408 QPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQ 487 (555)
Q Consensus 408 ~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 487 (555)
+.|++++|.+......++ ...+.|++++|++++.. ..+++|++|++++|+|+ .+|.
T Consensus 413 ~~L~Ls~N~l~~l~~~~~------------------~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~- 468 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIP------------------QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD- 468 (549)
T ss_dssp CEEECTTSCCSCCCTTSC------------------TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-
T ss_pred cEEECCCCCcccccchhc------------------CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-
Confidence 667777776654332221 23347999999998643 57899999999999999 6665
Q ss_pred hhCCccCCeeeCCCCCCCCCcceecCCC-CCCCCCCCCCccCCCcCCCCcc
Q 040254 488 ISQLTILERLDLSKNHLSENNLQGPIPS-GGQLHTFPPSSFEGNPEFCSDI 537 (555)
Q Consensus 488 l~~l~~L~~L~Ls~N~l~~~~l~~~ip~-~~~~~~l~~~~~~gNp~~c~~~ 537 (555)
...+++|++|+|++|+|+ +..|. -..+..+..++++||||.|+++
T Consensus 469 ~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLK-----SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCCC-----CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCccCCEEecCCCccC-----CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 467899999999999987 44443 2467788999999999999986
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.4e-44 Score=382.10 Aligned_cols=449 Identities=19% Similarity=0.121 Sum_probs=354.2
Q ss_pred cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254 33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD 112 (555)
Q Consensus 33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ 112 (555)
+.++++++ .+|..+. +++++|+|++|.+. .++...|.++++|++|++++|++++..+..|.. +++|++|+
T Consensus 17 ~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~------l~~L~~L~ 86 (606)
T 3vq2_A 17 QCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG------LHHLSNLI 86 (606)
T ss_dssp ECTTSCCS-SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT------CTTCCEEE
T ss_pred EccCCCcc-cCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhc------hhhcCEeE
Confidence 34445554 4555554 79999999999998 677778999999999999999999887877764 45999999
Q ss_pred ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccc-ccccccCCCCCcEEEcccCccc
Q 040254 113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF-ISNDIINLTSLLVLELYSKELI 191 (555)
Q Consensus 113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~ 191 (555)
+++|.+++..|..|+++++|++|++++|.+....+..+.++++|++|++++|.+++. .|..+.++++|++|++++|.+.
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 999999987799999999999999999998877777899999999999999999874 4888999999999999999999
Q ss_pred cCCCcCccCCCCCC----eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCccc---------------------
Q 040254 192 GSIPRDIGKLTNLK----YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYN--------------------- 246 (555)
Q Consensus 192 ~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--------------------- 246 (555)
+..+..+..+++|+ .|++++|.+....+..+.. .+|++|++++|.+.+......
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 88888787776665 8999999999655555544 489999999887642111111
Q ss_pred -----------------------------------ccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccC
Q 040254 247 -----------------------------------FSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQI 291 (555)
Q Consensus 247 -----------------------------------~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 291 (555)
+..+++|+.|+++++.+.... .+..+++|++|++++|.+ +.+
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSC
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-ccc
Confidence 344566777777777765433 566777777777777776 344
Q ss_pred ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccc--cchhhhCCCCCcEEEccC
Q 040254 292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQ--VPLWLSKLTKLEVLLLSG 369 (555)
Q Consensus 292 ~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~L~~ 369 (555)
|. + .+++|+.+++++|....... + ..+++|++|++++|.+++. .+..+..+++|++|++++
T Consensus 323 p~---------~-~l~~L~~L~l~~n~~~~~~~--~-----~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 323 PT---------L-DLPFLKSLTLTMNKGSISFK--K-----VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp CC---------C-CCSSCCEEEEESCSSCEECC--C-----CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred cc---------C-CCCccceeeccCCcCccchh--h-----ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 41 2 56788888888885443221 1 5789999999999999865 378899999999999999
Q ss_pred CccccccCccccCCCCCcEEEccCccCccccc-h---hhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCC
Q 040254 370 NQITGSIPGWFGNLPSLFYFALSQNNISGEFP-K---ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGL 445 (555)
Q Consensus 370 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~---~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 445 (555)
|.+. .+|..+..+++|++|++++|++.+..+ . .+.+|+.|++++|.+....+.. + .....
T Consensus 386 n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~--------------~~l~~ 449 (606)
T 3vq2_A 386 NGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-F--------------LGLTS 449 (606)
T ss_dssp CSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT-T--------------TTCTT
T ss_pred Cccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh-h--------------cCCCC
Confidence 9998 466889999999999999999987655 3 3567778888887764422110 0 01122
Q ss_pred CCEEEccCccccc-cCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC-CCCCCCC
Q 040254 446 RPTIFLANNSLSG-RIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG-GQLHTFP 523 (555)
Q Consensus 446 ~~~l~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~~~l~ 523 (555)
.+.|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ +.+|.. ..+..+.
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-----FLDSSHYNQLYSLS 524 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-----CEEGGGTTTCTTCC
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC-----CcCHHHccCCCcCC
Confidence 3479999999997 47888999999999999999999999999999999999999999997 343432 3466788
Q ss_pred CCccCCCcCC
Q 040254 524 PSSFEGNPEF 533 (555)
Q Consensus 524 ~~~~~gNp~~ 533 (555)
.+++++|...
T Consensus 525 ~L~l~~N~l~ 534 (606)
T 3vq2_A 525 TLDCSFNRIE 534 (606)
T ss_dssp EEECTTSCCC
T ss_pred EEECCCCcCc
Confidence 8888888654
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9e-44 Score=372.50 Aligned_cols=435 Identities=19% Similarity=0.188 Sum_probs=279.1
Q ss_pred eccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccE
Q 040254 31 MQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRL 110 (555)
Q Consensus 31 ~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~ 110 (555)
.+++++++++ .+|..+. ++|++|++++|.+. .+++..|.++++|++|++++|++++..|..|.. +++|++
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~ 73 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKF------NQELEY 73 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT------CTTCCE
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhc------ccCCCE
Confidence 4667778887 4666665 78899999999888 677677888899999999999888766666543 458999
Q ss_pred EEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeecccCcccccccccCCCCC--cEEEccc
Q 040254 111 LDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSL--LVLELYS 187 (555)
Q Consensus 111 L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~L~~ 187 (555)
|++++|+++. +|.. .+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++ ..+..+++| ++|++++
T Consensus 74 L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 74 LDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp EECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred EecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 9999998884 5554 78889999999888776 467888888999999999888875 356777777 8899988
Q ss_pred Ccc--ccCCCcCccCCC-CCCeeeCccCcCcccCC-ccccCCCCCCEEECcCcc-------CccccCcccccCCCCCcEE
Q 040254 188 KEL--IGSIPRDIGKLT-NLKYLLLYRNNLSGSLP-SSMMNCTNLKTLNLMGNL-------FAGNLSAYNFSVLSQLETI 256 (555)
Q Consensus 188 n~~--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L 256 (555)
|.+ .+..|..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|. +.+.++ .+..+++|+.|
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L 225 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNL 225 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhc
Confidence 888 666666665544 23345555665543322 244556666666666654 332332 35556666666
Q ss_pred Eccccccccccccccc---CCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccC--------------
Q 040254 257 DLYINMFTGSFLLTLT---SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFM-------------- 319 (555)
Q Consensus 257 ~l~~n~~~~~~~~~l~---~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~-------------- 319 (555)
+++++.+.+.....+. ..++|++|++++|++.+.+|..+... ....+++|+.+++++|.+
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~---~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY---SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC---CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTC
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc---ccccCceeEeccccccceecchhhhhcccccC
Confidence 6666655432211111 13466666666666665555443110 012333444444444444
Q ss_pred ------------CCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCcccc--ccCccccCCCC
Q 040254 320 ------------NEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITG--SIPGWFGNLPS 385 (555)
Q Consensus 320 ------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~ 385 (555)
...... ..+++|++|++++|++++..|.++..+++|++|++++|++++ .+|..+..+++
T Consensus 303 ~L~~L~l~~n~l~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCP-------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp CCSEEEEESSCCCCCCCC-------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred ceeEEEcCCCccccccch-------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence 332210 234445555555555554444455555555555555555543 22334445555
Q ss_pred CcEEEccCccCccccchh-hhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc
Q 040254 386 LFYFALSQNNISGEFPKE-LSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET 464 (555)
Q Consensus 386 L~~L~L~~n~l~~~~~~~-~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~ 464 (555)
|++|++++|++++.+|.. +..++.| +.|++++|++++..|..+
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L------------------------------------~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSL------------------------------------LSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTC------------------------------------CEEECCSSCCCGGGGGSC
T ss_pred CCEEECCCCcCCcccccchhccCccC------------------------------------CEEECcCCCCCcchhhhh
Confidence 555555555554423322 2222222 268999999987777665
Q ss_pred cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCCCCccCCCcCCCCccc
Q 040254 465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFPPSSFEGNPEFCSDIA 538 (555)
Q Consensus 465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~~~~~~gNp~~c~~~~ 538 (555)
. ++|++|++++|+|+ .+|..+..+++|++|++++|+|+ .+|.. ..+..+..++++|||+.|++++
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~------~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK------SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC------ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 4 78999999999998 77877779999999999999987 35543 3566788888999999998753
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=389.60 Aligned_cols=465 Identities=20% Similarity=0.212 Sum_probs=343.7
Q ss_pred CCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccc-cCCCCccccccCCCCCccEEE
Q 040254 34 AMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWNHSFCSMRLLD 112 (555)
Q Consensus 34 ~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~L~~L~ 112 (555)
.++++++.. |. -.+++++|+|++|.++ .+++..|.++++|++|+|++|.+... .+..|. .+++|++|+
T Consensus 11 cs~~~L~~v-P~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~------~L~~L~~L~ 79 (844)
T 3j0a_A 11 YRFCNLTQV-PQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR------NLPNLRILD 79 (844)
T ss_dssp ESCCCSSCC-CS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTS------SCTTCCEEE
T ss_pred ccCCCCCCC-CC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhc------CCCCCCEEE
Confidence 334555543 43 4579999999999998 66667799999999999999965543 355665 455999999
Q ss_pred ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHh--hhcCCCCCeeEeecccCccccc-ccccCCCCCcEEEcccCc
Q 040254 113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDD--IYAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKE 189 (555)
Q Consensus 113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~ 189 (555)
+++|.+.+..|..|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+++..+ ..|.++++|++|++++|.
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 9999999888999999999999999999988766665 8899999999999999988755 579999999999999999
Q ss_pred cccCCCcCccCC--CCCCeeeCccCcCcccCCccccCCCC------CCEEECcCccCccccCccc---------------
Q 040254 190 LIGSIPRDIGKL--TNLKYLLLYRNNLSGSLPSSMMNCTN------LKTLNLMGNLFAGNLSAYN--------------- 246 (555)
Q Consensus 190 ~~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~~~~------L~~L~l~~n~l~~~~~~~~--------------- 246 (555)
+.+..+..+..+ ++|+.|+++.|.+.+..+..+..+++ |++|++++|.+.+..+...
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 998888888777 89999999999998777766666555 9999999997664433211
Q ss_pred --------------------ccC--CCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhccccccc
Q 040254 247 --------------------FSV--LSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILM 304 (555)
Q Consensus 247 --------------------~~~--l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~ 304 (555)
|.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+.. +.
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--------~~ 311 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--------FY 311 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--------TT
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--------hc
Confidence 111 256777888887777766777777788888888888777554443 34
Q ss_pred CCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCC
Q 040254 305 GCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP 384 (555)
Q Consensus 305 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 384 (555)
.+++|+.|++++|.++...+..+ ..+++|+.|++++|.+....+..+..+++|++|++++|.+++. ..++
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~ 381 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNF-----YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIP 381 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSC-----SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCC
T ss_pred CCCCCCEEECCCCCCCccCHHHh-----cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCC
Confidence 45677888888887776665554 6677788888888877766666777788888888888877632 2256
Q ss_pred CCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCccccccccccc-----------CCCCEEEccC
Q 040254 385 SLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIF-----------GLRPTIFLAN 453 (555)
Q Consensus 385 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~l~L~~ 453 (555)
+|+.|++++|+++ .+|.....++.+++++|.+............+.++.+.+..+.+. ...+.|++++
T Consensus 382 ~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~ 460 (844)
T 3j0a_A 382 SIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460 (844)
T ss_dssp SCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred CcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence 7777777777776 445444555556666555544322111112233333333322221 2345789999
Q ss_pred ccccc-----cCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccC
Q 040254 454 NSLSG-----RIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFE 528 (555)
Q Consensus 454 n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~ 528 (555)
|.++. ..+..|.++++|++|+|++|.+++.+|..+..+++|++|+|++|+|+ .+|.......+..++++
T Consensus 461 N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------~l~~~~~~~~L~~L~Ls 534 (844)
T 3j0a_A 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT------VLSHNDLPANLEILDIS 534 (844)
T ss_dssp CCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS------SCCCCCCCSCCCEEEEE
T ss_pred CccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC------ccChhhhhccccEEECC
Confidence 98873 34456889999999999999999889989999999999999999997 34433223567777888
Q ss_pred CCcCCC
Q 040254 529 GNPEFC 534 (555)
Q Consensus 529 gNp~~c 534 (555)
+|....
T Consensus 535 ~N~l~~ 540 (844)
T 3j0a_A 535 RNQLLA 540 (844)
T ss_dssp EECCCC
T ss_pred CCcCCC
Confidence 875543
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-43 Score=379.67 Aligned_cols=449 Identities=16% Similarity=0.166 Sum_probs=332.9
Q ss_pred CcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEc-cCCcCcCcCchhH------------------------
Q 040254 17 EKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNL-SHNHVHGPLPINS------------------------ 71 (555)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L-~~n~~~~~i~~~~------------------------ 71 (555)
.++.|.. ....+.+++++++++|.+|++|+++++|++|+| ++|.+.|..+...
T Consensus 315 ~GV~C~~--~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l 392 (876)
T 4ecn_A 315 PGVDLDN--NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392 (876)
T ss_dssp TTEEECT--TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHT
T ss_pred CceEecC--CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhh
Confidence 7777765 356889999999999999999999999999999 8887654422110
Q ss_pred ---------------H-----------hcCCCCCEEEccC--CcCccccCCCCccccccCCCCCccEEEccCCcCCc---
Q 040254 72 ---------------F-----------HFLTLLEIIDLSY--NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS--- 120 (555)
Q Consensus 72 ---------------~-----------~~l~~L~~L~Ls~--n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~--- 120 (555)
+ .....++.+.+.. |++++ +|..+. .+++|++|++++|.+++
T Consensus 393 ~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~------~L~~L~~L~Ls~N~Lsg~~i 465 (876)
T 4ecn_A 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ------RLTKLQIIYFANSPFTYDNI 465 (876)
T ss_dssp CCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG------GCTTCCEEEEESCCCCGGGB
T ss_pred ccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh------cCCCCCEEECcCCcCCCCcc
Confidence 0 0011122222222 55555 444443 45588888888888887
Q ss_pred --------------cCCcccc--CCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc-Ccc-cccccccCC-----
Q 040254 121 --------------QVPPRLG--NCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK-LSG-FISNDIINL----- 177 (555)
Q Consensus 121 --------------~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l----- 177 (555)
.+|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ ..|..+..+
T Consensus 466 ~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~ 545 (876)
T 4ecn_A 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545 (876)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred cccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence 2777776 88889999988888888888888888888899998887 776 555544444
Q ss_pred --CCCcEEEcccCccccCCCc--CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCC-
Q 040254 178 --TSLLVLELYSKELIGSIPR--DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQ- 252 (555)
Q Consensus 178 --~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~- 252 (555)
++|++|++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .++ ..+..+++
T Consensus 546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp-~~l~~l~~~ 620 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIP-EDFCAFTDQ 620 (876)
T ss_dssp TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCC-TTSCEECTT
T ss_pred ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cch-HHHhhcccc
Confidence 48899999888887 7777 7888888999999988888 667 7888888899999888887 666 34677777
Q ss_pred CcEEEcccccccccccccccCCC--CCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCcccccc
Q 040254 253 LETIDLYINMFTGSFLLTLTSCR--LLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK 330 (555)
Q Consensus 253 L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 330 (555)
|+.|++++|.++ ..+..+.... +|+.|++++|++.+.+|.....+ ....+.+|+.|++++|.+...+...+
T Consensus 621 L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l---~~~~~~~L~~L~Ls~N~L~~lp~~~~--- 693 (876)
T 4ecn_A 621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM---DDYKGINASTVTLSYNEIQKFPTELF--- 693 (876)
T ss_dssp CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT---TTCCCCCEEEEECCSSCCCSCCHHHH---
T ss_pred CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh---ccccCCCcCEEEccCCcCCccCHHHH---
Confidence 889999888887 4555666554 48899999988876555322111 12234578899999998886554333
Q ss_pred ccCCCCCccEEEccCcccccccchhhhC--------CCCCcEEEccCCccccccCcccc--CCCCCcEEEccCccCcccc
Q 040254 331 ISDGFQNLRAVSLAGCQLTGQVPLWLSK--------LTKLEVLLLSGNQITGSIPGWFG--NLPSLFYFALSQNNISGEF 400 (555)
Q Consensus 331 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~ 400 (555)
..+++|+.|++++|+++ .+|..+.. +++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +
T Consensus 694 --~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l 768 (876)
T 4ecn_A 694 --ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F 768 (876)
T ss_dssp --HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred --ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence 56788999999999888 45544333 238999999999998 6777776 89999999999999986 6
Q ss_pred chhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEcc------CccccccCChhccCCCCCCeee
Q 040254 401 PKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLA------NNSLSGRIPAETGQLKFLNVLD 474 (555)
Q Consensus 401 ~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~------~n~l~~~~~~~~~~l~~L~~L~ 474 (555)
|..+..++.|. .|+++ +|++.+.+|..+..+++|++|+
T Consensus 769 p~~l~~L~~L~------------------------------------~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~ 812 (876)
T 4ecn_A 769 PTQPLNSSQLK------------------------------------AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812 (876)
T ss_dssp CCGGGGCTTCC------------------------------------EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred chhhhcCCCCC------------------------------------EEECCCCCCcccccccccChHHHhcCCCCCEEE
Confidence 77777766665 36664 4888889999999999999999
Q ss_pred CCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCC
Q 040254 475 LGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFC 534 (555)
Q Consensus 475 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c 534 (555)
|++|+| +.+|..+. ++|+.|||++|+|.....+...|. .......+.+|++.+
T Consensus 813 Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~----~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 813 IGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY----IEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH----HHTTCCEEECCTTSE
T ss_pred CCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc----ccchheeecCCCccc
Confidence 999999 48887765 699999999999973333333331 123455677777665
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-42 Score=367.78 Aligned_cols=416 Identities=19% Similarity=0.188 Sum_probs=320.6
Q ss_pred cCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccC
Q 040254 24 HGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNH 103 (555)
Q Consensus 24 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 103 (555)
.....+..+++++|.+++..+..|.++++|++|+|++|.+. .+++..|.++++|++|++++|++++..+..+.
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~------ 121 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIG------ 121 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCT------
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCcccc------
Confidence 44557889999999999999999999999999999999998 78878899999999999999999976554444
Q ss_pred CCCCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC----CeeEeecccCcccccccccCCC
Q 040254 104 SFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL----EEPSLHFNKLSGFISNDIINLT 178 (555)
Q Consensus 104 ~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L----~~L~l~~n~i~~~~~~~~~~l~ 178 (555)
.+++|++|++++|.+++ .+|..++++++|++|++++|.+....+..+..+++| +++++++|.++.+.+..+...
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~- 200 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-
Confidence 45699999999999986 468999999999999999999888878888888888 899999999998887777665
Q ss_pred CCcEEEcccCc----------------------------------------------------------cccCCCcCccC
Q 040254 179 SLLVLELYSKE----------------------------------------------------------LIGSIPRDIGK 200 (555)
Q Consensus 179 ~L~~L~L~~n~----------------------------------------------------------~~~~~~~~l~~ 200 (555)
+|+.|++++|. +.+..+..+..
T Consensus 201 ~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~ 280 (570)
T 2z63_A 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280 (570)
T ss_dssp EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG
T ss_pred cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC
Confidence 78888887762 22334455566
Q ss_pred CCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEE
Q 040254 201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280 (555)
Q Consensus 201 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 280 (555)
+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .++. ..+++|+.|++++|.+.+..+. ..+++|++|
T Consensus 281 l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L 352 (570)
T 2z63_A 281 LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL 352 (570)
T ss_dssp GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence 677777777777766 456666666 7777777777665 4442 3566777777777766544332 566777777
Q ss_pred EcccceecccC--ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccc-hhhh
Q 040254 281 RLACNQLEGQI--PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP-LWLS 357 (555)
Q Consensus 281 ~l~~n~~~~~~--~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~ 357 (555)
++++|.+.+.. +.. +..+++|+.+++++|.+...+.. + ..+++|++|++++|.+.+..+ ..+.
T Consensus 353 ~l~~n~l~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~-~-----~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQS--------DFGTTSLKYLDLSFNGVITMSSN-F-----LGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp ECCSSCCBEEEEEEHH--------HHTCSCCCEEECCSCSEEEEEEE-E-----ETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred eCcCCccCcccccccc--------ccccCccCEEECCCCcccccccc-c-----cccCCCCEEEccCCccccccchhhhh
Confidence 77777665322 222 33456777777777776654433 2 556777777777777765444 4566
Q ss_pred CCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc-cccchhhhccccchhhhccCCCCCCCCCccccCCCcccc
Q 040254 358 KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTS 436 (555)
Q Consensus 358 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~ 436 (555)
.+++|++|++++|++.+..+..+..+++|++|++++|.++ +.+|..+..++.|.
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~------------------------- 473 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT------------------------- 473 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-------------------------
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC-------------------------
Confidence 7777777777777777667777777777777777777776 45666666666555
Q ss_pred cccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 437 HQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 437 ~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
.|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 474 -----------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 474 -----------FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp -----------EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----------EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 6999999999888999999999999999999999888888999999999999999987
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-43 Score=370.96 Aligned_cols=455 Identities=16% Similarity=0.166 Sum_probs=348.5
Q ss_pred EecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCcc
Q 040254 12 ISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG 90 (555)
Q Consensus 12 ~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~ 90 (555)
|.|.+... ..+......+..+++++|.+++..+..|..+++|++|++++|.+. .+++..|..+++|++|++++|++++
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCS
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCc
Confidence 56654444 333333467899999999999999999999999999999999998 6777789999999999999999997
Q ss_pred ccCCCCccccccCCCCCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeecccCcc
Q 040254 91 ELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFNKLSG 168 (555)
Q Consensus 91 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n~i~~ 168 (555)
..+..+. .+++|++|++++|.+++ ..+..++++++|++|++++|...+.++ ..+.++++|++|++++|.+++
T Consensus 89 ~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 89 LSSSWFG------PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CCHHHHT------TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cCHHHhc------cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 6554443 45699999999999986 356789999999999999998655555 579999999999999999999
Q ss_pred cccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccC---CccccCCCCCCEEECcCccCccccCc-
Q 040254 169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL---PSSMMNCTNLKTLNLMGNLFAGNLSA- 244 (555)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~- 244 (555)
..+..+..+++|++|+++.|.+.......+..+++|++|++++|.+.+.. ......+++|++|++++|.+.+..+.
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 88999999999999999998875332222356899999999999987531 12234567888888888876532211
Q ss_pred --ccccCCCCCcEEEcccccccccc------cccccC-----------------------------CCCCcEEEccccee
Q 040254 245 --YNFSVLSQLETIDLYINMFTGSF------LLTLTS-----------------------------CRLLTALRLACNQL 287 (555)
Q Consensus 245 --~~~~~l~~L~~L~l~~n~~~~~~------~~~l~~-----------------------------~~~L~~L~l~~n~~ 287 (555)
..+..+++|+.+++++|.+.+.. ...+.. .++|+.+++++|.+
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence 12344566666666666554321 011122 34566666666665
Q ss_pred cccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccc--hhhhCCCCCcEE
Q 040254 288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP--LWLSKLTKLEVL 365 (555)
Q Consensus 288 ~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L 365 (555)
. .+|..+ +..+++|+.|++++|.+.+..+.. ......+++|++|++++|++++..+ ..+..+++|++|
T Consensus 323 ~-~ip~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 323 F-LVPCSF-------SQHLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp C-CCCHHH-------HHHCTTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred c-cCCHHH-------HhcCccccEEEccCCccccccccc--hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 4 444433 134678999999999987643211 0112678999999999999985432 568899999999
Q ss_pred EccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCC
Q 040254 366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGL 445 (555)
Q Consensus 366 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 445 (555)
++++|+++ .+|..+..+++|++|++++|++++.....+.+++.|++++|.+......+ ..
T Consensus 393 ~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l-------------------~~ 452 (549)
T 2z81_A 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL-------------------PR 452 (549)
T ss_dssp ECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCC-------------------TT
T ss_pred ECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccC-------------------Ch
Confidence 99999999 67888889999999999999998443333468999999999876543211 22
Q ss_pred CCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 446 RPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 446 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
.+.|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|++|++++|+++
T Consensus 453 L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 453 LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 347999999999 5665 467899999999999999988888999999999999999987
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.5e-41 Score=360.46 Aligned_cols=467 Identities=19% Similarity=0.183 Sum_probs=309.5
Q ss_pred eEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCc
Q 040254 11 IISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS 89 (555)
Q Consensus 11 ~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~ 89 (555)
.+.|..... .++-..+.++..+++++|.|++..+.+|.++++||+|+|++|.++ .+++.+|.++++|++|+|++|+++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC
Confidence 345665554 455555778999999999999999999999999999999999998 799889999999999999999999
Q ss_pred cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeecccCcc
Q 040254 90 GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNKLSG 168 (555)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~ 168 (555)
+..++.|. .+++|++|++++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|++++
T Consensus 114 ~l~~~~f~------~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 114 SLALGAFS------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EECGGGGT------TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCHHHhc------CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 77666665 45599999999999998667789999999999999998765 467888999999999999999998
Q ss_pred cccccccCCCCC----cEEEcccCccccCCCcCccCCCCCCeeeCccCcCc-----------------------------
Q 040254 169 FISNDIINLTSL----LVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS----------------------------- 215 (555)
Q Consensus 169 ~~~~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~----------------------------- 215 (555)
+.+..+..+.++ ..++++.|.+....+..+.. ..++.+++..|...
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 877777665544 35777777765443333221 22333333332111
Q ss_pred -----------------------------ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254 216 -----------------------------GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266 (555)
Q Consensus 216 -----------------------------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 266 (555)
......+....+++.+.+.++.+. .+. .+.....++.|++.++.+...
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK--DFSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG--GGGSCCCCSEEEEESCEESSC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc--ccccchhhhhhhcccccccCc
Confidence 001112233345556666555543 222 345556777777777765543
Q ss_pred ccccccCCCCCcEEEcccceecccCChh-hhh---------------cccccccCCCCCcEEEeccccCCCCCCcccccc
Q 040254 267 FLLTLTSCRLLTALRLACNQLEGQIPPE-IIK---------------LKSLILMGCKNLNVLFLTMNFMNEATPNYDQNK 330 (555)
Q Consensus 267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~---------------l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 330 (555)
.. ..++.|+.+.+..+......... +.. .....+..+.+++.+++..+.........
T Consensus 344 ~~---~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~---- 416 (635)
T 4g8a_A 344 PT---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF---- 416 (635)
T ss_dssp CC---CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCC----
T ss_pred Cc---ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccc----
Confidence 22 12344455555444433111000 000 00000112234444444444433322111
Q ss_pred ccCCCCCccEEEccCccccccc-chhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc-cccchhhhccc
Q 040254 331 ISDGFQNLRAVSLAGCQLTGQV-PLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQ 408 (555)
Q Consensus 331 ~~~~~~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 408 (555)
..+++|+.+++..+...... ...+..+++++.++++.|.+....+..+..+++|++|++++|.+. +..|..+..++
T Consensus 417 --~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 417 --LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp --TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred --cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 33455555555555443222 234455555666666666665555555555566666666665532 23444444444
Q ss_pred cchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhh
Q 040254 409 PLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQI 488 (555)
Q Consensus 409 ~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 488 (555)
.|. .|++++|++++..|..|.++++|++|+|++|+|++..|..|
T Consensus 495 ~L~------------------------------------~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 495 NLT------------------------------------FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp TCC------------------------------------EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG
T ss_pred ccC------------------------------------EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH
Confidence 444 69999999999999999999999999999999998899999
Q ss_pred hCCccCCeeeCCCCCCCCCcceecCCCC-CCC-CCCCCCccCCCcCCCCccc
Q 040254 489 SQLTILERLDLSKNHLSENNLQGPIPSG-GQL-HTFPPSSFEGNPEFCSDIA 538 (555)
Q Consensus 489 ~~l~~L~~L~Ls~N~l~~~~l~~~ip~~-~~~-~~l~~~~~~gNp~~c~~~~ 538 (555)
..+++|++|||++|+|+ +..|.. ..+ .++..++++||||.|++.+
T Consensus 539 ~~l~~L~~L~Ls~N~l~-----~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIM-----TSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCTTCCEEECTTSCCC-----BCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred hCCCCCCEEECCCCcCC-----CCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999997 444543 123 5688899999999999754
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.7e-42 Score=372.12 Aligned_cols=424 Identities=16% Similarity=0.162 Sum_probs=341.2
Q ss_pred CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEc-cCCcCccccCCCCccc------------------------------
Q 040254 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDL-SYNSLSGELTGLIPSL------------------------------ 99 (555)
Q Consensus 51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~~~------------------------------ 99 (555)
.+++.|+|+++.+.|.+|+ .+.++++|++|+| ++|.+++..+......
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5899999999999999996 5777999999999 8887765522110000
Q ss_pred ---------------cccCCCCCccEEEccC--CcCCccCCccccCCCCCcEEEccCCCCCC-----------------C
Q 040254 100 ---------------AWNHSFCSMRLLDFSY--NDFSSQVPPRLGNCSRLKSFQAGYSNLLR-----------------S 145 (555)
Q Consensus 100 ---------------~~~~~~~~L~~L~ls~--n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-----------------~ 145 (555)
........++.+.+.. |.+++ +|..++++++|++|+|++|.+.+ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0000112233344433 77776 89999999999999999999887 3
Q ss_pred CcHhhh--cCCCCCeeEeecccCcccccccccCCCCCcEEEcccCc-ccc-CCCcCcc-------CCCCCCeeeCccCcC
Q 040254 146 LPDDIY--AAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKE-LIG-SIPRDIG-------KLTNLKYLLLYRNNL 214 (555)
Q Consensus 146 ~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~-------~l~~L~~L~L~~n~l 214 (555)
+|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|. +.+ .+|..+. .+++|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888877 99999999999999998899999999999999999998 776 6776554 445999999999999
Q ss_pred cccCCc--cccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCC-CcEEEcccceecccC
Q 040254 215 SGSLPS--SMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL-LTALRLACNQLEGQI 291 (555)
Q Consensus 215 ~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~ 291 (555)
. .+|. .+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|++. .+
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 9 7888 8999999999999999998 777 7899999999999999998 66777888998 999999999988 66
Q ss_pred ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCc
Q 040254 292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQ 371 (555)
Q Consensus 292 ~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 371 (555)
|..+... ..++|+.|++++|.+.+..+......-....++|+.|++++|.++...+..+..+++|+.|++++|+
T Consensus 635 p~~~~~~------~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 635 PNIFNAK------SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CSCCCTT------CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred chhhhcc------ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 6543322 2345999999999998765433211111234589999999999994444445689999999999999
Q ss_pred cccccCcc-ccC-------CCCCcEEEccCccCccccchhhh--ccccchhhhccCCCCCCCCCccccCCCccccccccc
Q 040254 372 ITGSIPGW-FGN-------LPSLFYFALSQNNISGEFPKELS--RLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR 441 (555)
Q Consensus 372 l~~~~~~~-~~~-------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 441 (555)
+. .+|.. +.. +++|++|+|++|+++ .+|..+. .++.|.
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~------------------------------ 756 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS------------------------------ 756 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCC------------------------------
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcC------------------------------
Confidence 99 44443 332 239999999999999 7777765 676666
Q ss_pred ccCCCCEEEccCccccccCChhccCCCCCCeeeCCC------ccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCC
Q 040254 442 IFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGN------NNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS 515 (555)
Q Consensus 442 ~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~ 515 (555)
.|++++|++++ +|..+..+++|++|+|++ |++.+.+|..+..+++|+.|+|++|+|. .+|.
T Consensus 757 ------~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~------~Ip~ 823 (876)
T 4ecn_A 757 ------NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR------KVDE 823 (876)
T ss_dssp ------EEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC------BCCS
T ss_pred ------EEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC------ccCH
Confidence 59999999996 788999999999999977 8888899999999999999999999984 6676
Q ss_pred CCCCCCCCCCccCCCcCCC
Q 040254 516 GGQLHTFPPSSFEGNPEFC 534 (555)
Q Consensus 516 ~~~~~~l~~~~~~gNp~~c 534 (555)
. ....+..+++++||+..
T Consensus 824 ~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 824 K-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp C-CCSSSCEEECCSCTTCE
T ss_pred h-hcCCCCEEECCCCCCCc
Confidence 5 33678999999999865
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-41 Score=357.78 Aligned_cols=438 Identities=19% Similarity=0.188 Sum_probs=302.3
Q ss_pred eeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCcc
Q 040254 30 LMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMR 109 (555)
Q Consensus 30 ~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~ 109 (555)
..++++++++++ +|..+. ++|++|++++|.+. .++...|.++++|++|++++|++++..++.|.. +++|+
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF------NQDLE 103 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT------CTTCC
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCC------CCCCC
Confidence 567788889886 676664 79999999999998 788778999999999999999999888877764 44999
Q ss_pred EEEccCCcCCccCCccccCCCCCcEEEccCCCCCC-CCcHhhhcCCCCCeeEeecccCcccccccccCCCCC--cEEEcc
Q 040254 110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR-SLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSL--LVLELY 186 (555)
Q Consensus 110 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~L~ 186 (555)
+|++++|.++. +|.. .+++|++|++++|.+.+ ..|..|.++++|++|++++|.++.. .+..+++| ++|+++
T Consensus 104 ~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 104 YLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 99999999995 6655 89999999999998876 3568899999999999999998763 45556666 999999
Q ss_pred cCcc--ccCCCcCccCCC--CCCeeeCccCcCcccCCc-cccCCCCCCEEECcCccC-----ccccCcccccCCCCCcEE
Q 040254 187 SKEL--IGSIPRDIGKLT--NLKYLLLYRNNLSGSLPS-SMMNCTNLKTLNLMGNLF-----AGNLSAYNFSVLSQLETI 256 (555)
Q Consensus 187 ~n~~--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L 256 (555)
+|.+ .+..|..+..+. .+ .++++.|.+.+..+. .+..+++|+.+++++|.. .+.+ ..+..++.++.+
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L 254 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNV 254 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEE
T ss_pred cccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEE
Confidence 9998 777777776544 23 456777776644332 355677888888887742 1111 235566777777
Q ss_pred Ecccccccccccc---cccCCCCCcEEEcccceecccCChhh-----hhccccccc------------------CCCCCc
Q 040254 257 DLYINMFTGSFLL---TLTSCRLLTALRLACNQLEGQIPPEI-----IKLKSLILM------------------GCKNLN 310 (555)
Q Consensus 257 ~l~~n~~~~~~~~---~l~~~~~L~~L~l~~n~~~~~~~~~l-----~~l~~l~~~------------------~~~~L~ 310 (555)
++.++.+.+.... .....++|++|++++|.+.+.+|..+ ..++.+.+. ...+|+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 7766655432111 11123477777777777776666554 222211110 012455
Q ss_pred EEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccc--cCccccCCCCCcE
Q 040254 311 VLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGS--IPGWFGNLPSLFY 388 (555)
Q Consensus 311 ~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~ 388 (555)
.+++++|.+...... ..+++|++|++++|.+++..|.++..+++|++|++++|++++. .|..+..+++|++
T Consensus 335 ~L~l~~n~~~~~~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 335 MLSISDTPFIHMVCP-------PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp EEEEESSCCCCCCCC-------SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred EEEccCCCcccccCc-------cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 555555555432210 3445666666666666655556666666666666666666542 2344556666666
Q ss_pred EEccCccCccccch-hhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCC
Q 040254 389 FALSQNNISGEFPK-ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQL 467 (555)
Q Consensus 389 L~L~~n~l~~~~~~-~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l 467 (555)
|++++|++++.+|. .+..++.|. .|++++|++++..|..+.
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~------------------------------------~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESIL------------------------------------VLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCC------------------------------------EEECCSSCCCGGGGSSCC--
T ss_pred EECCCCcCCCccChhhhcCcccCC------------------------------------EEECCCCCCCcchhhhhc--
Confidence 66666666543332 233333333 689999998876665543
Q ss_pred CCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCCCCccCCCcCCCCccc
Q 040254 468 KFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFPPSSFEGNPEFCSDIA 538 (555)
Q Consensus 468 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~~~~~~gNp~~c~~~~ 538 (555)
++|++|++++|+|+ .+|..+..+++|++|++++|+|+ .+|.. ..+..+..++++||||.|++++
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~------~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK------SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC------CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC------CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 68999999999998 67777778999999999999987 45543 4567788888999999998653
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.7e-43 Score=372.82 Aligned_cols=366 Identities=18% Similarity=0.202 Sum_probs=309.3
Q ss_pred CCcCcCcCchhHHhcCCCCCEEEccCCcCccc-----------------cCCCCccccccCCCCCccEEEccCCcCCccC
Q 040254 60 HNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-----------------LTGLIPSLAWNHSFCSMRLLDFSYNDFSSQV 122 (555)
Q Consensus 60 ~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~-----------------~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 122 (555)
+|.+++ +|. .|.++++|++|+|++|++++. .|..+. ...+++|++|++++|.+.+.+
T Consensus 192 ~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~----~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 192 SNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK----WDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp SCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC----GGGCTTCCEEEEECCTTCSSC
T ss_pred cCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh----hcccCCCCEEEecCCcCCccC
Confidence 567886 886 478899999999999999984 555554 013559999999999999999
Q ss_pred CccccCCCCCcEEEccCCC-CCC-CCcHhhhcC------CCCCeeEeecccCcccccc--cccCCCCCcEEEcccCcccc
Q 040254 123 PPRLGNCSRLKSFQAGYSN-LLR-SLPDDIYAA------ASLEEPSLHFNKLSGFISN--DIINLTSLLVLELYSKELIG 192 (555)
Q Consensus 123 ~~~~~~l~~L~~L~L~~~~-~~~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~ 192 (555)
|..++++++|++|++++|. +.+ .+|..+.++ ++|++|++++|.++. .|. .+..+++|++|++++|.+.+
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCcc
Confidence 9999999999999999998 777 789888886 999999999999994 566 89999999999999999998
Q ss_pred CCCcCccCCCCCCeeeCccCcCcccCCccccCCCC-CCEEECcCccCccccCcccccCC--CCCcEEEcccccccccccc
Q 040254 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTN-LKTLNLMGNLFAGNLSAYNFSVL--SQLETIDLYINMFTGSFLL 269 (555)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~ 269 (555)
.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .++. .+... ++|+.|++++|.+.+..+.
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred chh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCCcchh
Confidence 888 8999999999999999999 78888999999 999999999998 6763 45554 4899999999999988887
Q ss_pred ccc-------CCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccc--cCCCCCccE
Q 040254 270 TLT-------SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKI--SDGFQNLRA 340 (555)
Q Consensus 270 ~l~-------~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~~~~~L~~ 340 (555)
.+. .+++|++|++++|++. .+|..+ +..+++|+.|++++|.++..+...+.... ...+++|+.
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-------~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL-------FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH-------HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCE
T ss_pred hhcccccccccCCCCCEEECcCCccC-cCCHHH-------HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccE
Confidence 777 7789999999999998 455442 23457899999999999966654431100 112338999
Q ss_pred EEccCcccccccchhhh--CCCCCcEEEccCCccccccCccccCCCCCcEEEc------cCccCccccchhhhccccchh
Q 040254 341 VSLAGCQLTGQVPLWLS--KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFAL------SQNNISGEFPKELSRLQPLVI 412 (555)
Q Consensus 341 L~l~~n~i~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~l~~L~~ 412 (555)
|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|+| ++|++.+.+|..+.+++.|.
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~- 569 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT- 569 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC-
T ss_pred EECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC-
Confidence 999999999 6777776 99999999999999996 8888999999999999 56778888998888888887
Q ss_pred hhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecc
Q 040254 413 EQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIP 485 (555)
Q Consensus 413 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 485 (555)
.|++++|++ +.+|..+. ++|++|++++|+++....
T Consensus 570 -----------------------------------~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 570 -----------------------------------QLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp -----------------------------------EEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred -----------------------------------EEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence 599999999 47887765 899999999999985543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-41 Score=352.29 Aligned_cols=435 Identities=17% Similarity=0.191 Sum_probs=333.0
Q ss_pred ceEecccCcc-eeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcC
Q 040254 10 QIISCHTEKS-ILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSL 88 (555)
Q Consensus 10 ~~~~c~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i 88 (555)
..+.|..... ..+......+..+++++|.|++..+..|..+++|++|++++|.+. .+++..|..+++|++|++++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCce
Confidence 4455655544 333333367889999999999999899999999999999999998 67667899999999999999999
Q ss_pred ccccCCCCccccccCCCCCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC--CeeEeeccc
Q 040254 89 SGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL--EEPSLHFNK 165 (555)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~l~~n~ 165 (555)
+..... .+++|++|++++|.+++ .+|..++++++|++|++++|.+.. ..+..+++| ++|++++|.
T Consensus 82 ~~lp~~---------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 82 VKISCH---------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CEEECC---------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred eecCcc---------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 854332 35599999999999987 467899999999999999988765 457778888 999999999
Q ss_pred C--cccccccccCCC-CCcEEEcccCccccCCCc-CccCCCCCCeeeCccCc-------CcccCCccccCCCCCCEEECc
Q 040254 166 L--SGFISNDIINLT-SLLVLELYSKELIGSIPR-DIGKLTNLKYLLLYRNN-------LSGSLPSSMMNCTNLKTLNLM 234 (555)
Q Consensus 166 i--~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~~~~L~~L~l~ 234 (555)
+ .+..+..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++|++|+++
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLN 228 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccc
Confidence 9 666676666655 233566777776655443 45678888888888876 443343 56677778888877
Q ss_pred CccCccccCcccc--cCCCCCcEEEcccccccccccccc-----cCCCCCcEEEcccceecccCC-hhhhh------ccc
Q 040254 235 GNLFAGNLSAYNF--SVLSQLETIDLYINMFTGSFLLTL-----TSCRLLTALRLACNQLEGQIP-PEIIK------LKS 300 (555)
Q Consensus 235 ~n~l~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~-~~l~~------l~~ 300 (555)
+|.+.+....... ...++|++|++++|.+.+..+..+ ..++.|+.+++++|.+ .+| ..+.. ++.
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeE
Confidence 7766532111111 113477777777777776666555 6667777777777766 333 22221 121
Q ss_pred cc-----------ccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccc--ccchhhhCCCCCcEEEc
Q 040254 301 LI-----------LMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG--QVPLWLSKLTKLEVLLL 367 (555)
Q Consensus 301 l~-----------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L 367 (555)
+. ...+++|+.|++++|.+++..+..+ ..+++|++|++++|++++ .+|..+..+++|++|++
T Consensus 307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC-----GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC-----CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred EEcCCCccccccchhhCCcccEEEeECCccChhhhhhh-----ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 11 1577899999999999998666555 778999999999999986 45678999999999999
Q ss_pred cCCccccccCc-cccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCC
Q 040254 368 SGNQITGSIPG-WFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLR 446 (555)
Q Consensus 368 ~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 446 (555)
++|++.+.+|. .+..+++|++|++++|++++..|..+. +.|.
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~----------------------------------- 424 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK----------------------------------- 424 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC-----------------------------------
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC-----------------------------------
Confidence 99999974554 588899999999999999877665543 2333
Q ss_pred CEEEccCccccccCChhccCCCCCCeeeCCCccceeecch-hhhCCccCCeeeCCCCCCC
Q 040254 447 PTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPN-QISQLTILERLDLSKNHLS 505 (555)
Q Consensus 447 ~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~ 505 (555)
.|++++|+++ .+|..+..+++|++|++++|++++ +|. .+..+++|++|++++|+++
T Consensus 425 -~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 425 -VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred -EEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence 5999999999 788888899999999999999994 555 4899999999999999997
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-39 Score=333.36 Aligned_cols=370 Identities=19% Similarity=0.153 Sum_probs=267.6
Q ss_pred CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccc-cCCCCccccccCCCCCccEEEccCCcCCccCCccccCC
Q 040254 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNC 129 (555)
Q Consensus 51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 129 (555)
++|++|+|++|.+. .+++..|.++++|++|++++|.+.+. .+..|. .+++|++|++++|.+++..|..++++
T Consensus 30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR------GLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTT------TCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECccccc------ccccCCEEeCCCCccCccChhhccCc
Confidence 68899999999988 56566788899999999999888643 344454 34588899998888887778888888
Q ss_pred CCCcEEEccCCCCCCCCcHh--hhcCCCCCeeEeecccCccccccc-ccCCCCCcEEEcccCccccCCCcCccCC--CCC
Q 040254 130 SRLKSFQAGYSNLLRSLPDD--IYAAASLEEPSLHFNKLSGFISND-IINLTSLLVLELYSKELIGSIPRDIGKL--TNL 204 (555)
Q Consensus 130 ~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L 204 (555)
++|++|++++|.+.+..+.. +.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+ .+|
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 88888888888877655544 777888888888888888776654 7788888888888888877766666544 577
Q ss_pred CeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccC---CCCCcEEE
Q 040254 205 KYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTS---CRLLTALR 281 (555)
Q Consensus 205 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~---~~~L~~L~ 281 (555)
+.|++++|.+.+..+..+.. .. ...+..+++|+.|++++|.+.+..+..+.. ..+|+.++
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~----------------~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGW----------------EK-CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTH----------------HH-HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred cccccccCcccccchhhccc----------------cc-cccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 77777777776433222110 00 001122344555555555554433333322 25555666
Q ss_pred cccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCC
Q 040254 282 LACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTK 361 (555)
Q Consensus 282 l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 361 (555)
+++|...+.... .+.+.......+ ..-..++|+.|++++|++.+..+.++..+++
T Consensus 246 l~~~~~~~~~~~----------------------~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 300 (455)
T 3v47_A 246 LSNSYNMGSSFG----------------------HTNFKDPDNFTF---KGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300 (455)
T ss_dssp CTTCTTTSCCTT----------------------CCSSCCCCTTTT---GGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred eccccccccccc----------------------hhhhccCccccc---ccccccCceEEEecCccccccchhhcccCCC
Confidence 655543321100 000000000000 0012467899999999998888889999999
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCccccccccc
Q 040254 362 LEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNR 441 (555)
Q Consensus 362 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 441 (555)
|++|++++|++.+..+..|..+++|++|++++|.+++..+..+.+++.|.
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------------------------------ 350 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE------------------------------ 350 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC------------------------------
T ss_pred CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC------------------------------
Confidence 99999999999988888899999999999999999877788888887776
Q ss_pred ccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 442 IFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 442 ~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
.|++++|++++..|..+..+++|++|++++|+|++..+..+..+++|++|++++|+++
T Consensus 351 ------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 351 ------VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ------EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 5999999999888999999999999999999999777777889999999999999987
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-38 Score=324.79 Aligned_cols=390 Identities=18% Similarity=0.187 Sum_probs=264.7
Q ss_pred CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc-cCCccccCCCCC
Q 040254 54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS-QVPPRLGNCSRL 132 (555)
Q Consensus 54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L 132 (555)
+.++.+++.+. .+|. + .++|++|+|++|.+++..+..+.. +++|++|++++|.+.+ ..+..|.++++|
T Consensus 13 ~~~~c~~~~l~-~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 13 YNAICINRGLH-QVPE--L--PAHVNYVDLSLNSIAELNETSFSR------LQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp TEEECCSSCCS-SCCC--C--CTTCCEEECCSSCCCEECTTTTSS------CTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred cccCcCCCCcc-cCCC--C--CCccCEEEecCCccCcCChhHhcc------CccccEEECcCCcccceECcccccccccC
Confidence 45666666666 5664 1 256777777777776655555543 3367777777766653 234556666666
Q ss_pred cEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccc--cccCCCCCcEEEcccCccccCCCcC-ccCCCCCCeeeC
Q 040254 133 KSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISN--DIINLTSLLVLELYSKELIGSIPRD-IGKLTNLKYLLL 209 (555)
Q Consensus 133 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~L 209 (555)
++|++++|.+....|..+.++++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|.. +..+++|++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 6666666666655566666666666666666666553222 2566666666666666665554543 555666666666
Q ss_pred ccCcCcccCCccccCC--CCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEccccee
Q 040254 210 YRNNLSGSLPSSMMNC--TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQL 287 (555)
Q Consensus 210 ~~n~l~~~~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 287 (555)
++|.+.+..+..+..+ .+|+.|++++|.+.+ ++...+. ......+..+++|++|++++|++
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~-~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD-MNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT-CSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCC
T ss_pred CCCcccccChhhhhccccccccccccccCcccc-cchhhcc----------------ccccccccccceeeeEecCCCcc
Confidence 6666654444444333 344444444444331 1100000 00112234568899999999999
Q ss_pred cccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhh--CCCCCcEE
Q 040254 288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS--KLTKLEVL 365 (555)
Q Consensus 288 ~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L 365 (555)
.+..+..+.... ...+|+.+++++|........ .+.+....+..+. ..++|++|
T Consensus 225 ~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 225 KESMAKRFFDAI-----AGTKIQSLILSNSYNMGSSFG-------------------HTNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp CHHHHHHHHHHT-----TTCCEEEEECTTCTTTSCCTT-------------------CCSSCCCCTTTTGGGTTSCCCEE
T ss_pred cccchhhhhccc-----cccceeeEeeccccccccccc-------------------hhhhccCcccccccccccCceEE
Confidence 877776665432 235778888887765443211 1111111122222 34689999
Q ss_pred EccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCC
Q 040254 366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGL 445 (555)
Q Consensus 366 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 445 (555)
++++|++.+..+..+..+++|++|++++|++++..+..+..++.|.
T Consensus 281 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---------------------------------- 326 (455)
T 3v47_A 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL---------------------------------- 326 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC----------------------------------
T ss_pred EecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC----------------------------------
Confidence 9999999988899999999999999999999988888888888776
Q ss_pred CCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCC--CCCCCCC
Q 040254 446 RPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSG--GQLHTFP 523 (555)
Q Consensus 446 ~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~l~ 523 (555)
.|++++|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|+|+ .+|.. ..+..+.
T Consensus 327 --~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 327 --KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK------SVPDGIFDRLTSLQ 398 (455)
T ss_dssp --EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------CCCTTTTTTCTTCC
T ss_pred --EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc------cCCHhHhccCCccc
Confidence 5999999999888999999999999999999999888999999999999999999997 34432 4677889
Q ss_pred CCccCCCcCCCCcc
Q 040254 524 PSSFEGNPEFCSDI 537 (555)
Q Consensus 524 ~~~~~gNp~~c~~~ 537 (555)
.+++++||+.|+++
T Consensus 399 ~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 399 KIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCCcccCCC
Confidence 99999999999987
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.5e-38 Score=332.80 Aligned_cols=412 Identities=21% Similarity=0.228 Sum_probs=301.7
Q ss_pred ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254 26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105 (555)
Q Consensus 26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 105 (555)
+..+..+++++|.|++..+.+|..+++|++|++++|.++ .+++..|..+++|++|++++|+++..... .+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---------~l 120 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC---------PM 120 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC---------CC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc---------cc
Confidence 457889999999999999999999999999999999998 67777899999999999999999854322 35
Q ss_pred CCccEEEccCCcCCc-cCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC--CeeEeecccC--cccccccccCCCC-
Q 040254 106 CSMRLLDFSYNDFSS-QVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL--EEPSLHFNKL--SGFISNDIINLTS- 179 (555)
Q Consensus 106 ~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L--~~L~l~~n~i--~~~~~~~~~~l~~- 179 (555)
++|++|++++|.+++ ..|..|+++++|++|++++|.+... .+..+++| ++|++++|.+ ++..+..+..+..
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 599999999999997 3468899999999999999887653 45555666 9999999999 7777777776541
Q ss_pred CcEEEcccCccccCCCc-CccCCCCCCeeeCccCcCc----ccCCccccCCCCCCEEECcCccCccccCcc--cccCCCC
Q 040254 180 LLVLELYSKELIGSIPR-DIGKLTNLKYLLLYRNNLS----GSLPSSMMNCTNLKTLNLMGNLFAGNLSAY--NFSVLSQ 252 (555)
Q Consensus 180 L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~l~~ 252 (555)
.-.+++++|.+.+.++. .+..+++|+.+++++|... ......+..+++|+.+++.++.+.+..... ......+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 12456667776654443 3456677777777776411 011123444455555555544333110000 0111235
Q ss_pred CcEEEcccccccccccccc-----cCC--------------------------CCCcEEEcccceecccCChhhhhcccc
Q 040254 253 LETIDLYINMFTGSFLLTL-----TSC--------------------------RLLTALRLACNQLEGQIPPEIIKLKSL 301 (555)
Q Consensus 253 L~~L~l~~n~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~l 301 (555)
|++|++++|.+.+..+..+ ..+ .+|++|++++|.+....
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---------- 347 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV---------- 347 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC----------
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc----------
Confidence 5555555555544333332 222 34555555555443111
Q ss_pred cccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccc--cchhhhCCCCCcEEEccCCccccccC-c
Q 040254 302 ILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQ--VPLWLSKLTKLEVLLLSGNQITGSIP-G 378 (555)
Q Consensus 302 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~-~ 378 (555)
....+++|+.+++++|.+++..+..+ ..+++|++|++++|++++. .|..+..+++|++|++++|++.+.+| .
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGC-----STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTC-----CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred CccCCCCceEEECCCCccccchhhhh-----cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 01567899999999999998766555 7889999999999999863 35678999999999999999997444 4
Q ss_pred cccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccc
Q 040254 379 WFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSG 458 (555)
Q Consensus 379 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~ 458 (555)
.+..+++|++|++++|++++..|..+. +.|. .|++++|+++
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~------------------------------------~L~L~~N~l~- 463 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVK------------------------------------VLDLHNNRIM- 463 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS------------------------------------EEECCSSCCC-
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCC------------------------------------EEECCCCcCc-
Confidence 588999999999999999876665443 2333 5899999998
Q ss_pred cCChhccCCCCCCeeeCCCccceeecchh-hhCCccCCeeeCCCCCCC
Q 040254 459 RIPAETGQLKFLNVLDLGNNNFAGSIPNQ-ISQLTILERLDLSKNHLS 505 (555)
Q Consensus 459 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~ 505 (555)
.+|..+..+++|++|++++|+|+ .+|.. +..+++|++|++++|+++
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 67777779999999999999999 55555 899999999999999997
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-35 Score=319.18 Aligned_cols=441 Identities=20% Similarity=0.137 Sum_probs=305.1
Q ss_pred cCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc
Q 040254 42 YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ 121 (555)
Q Consensus 42 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 121 (555)
.+|+.+. +++++|+|++|.++ .+++..|.++++|++|+|++|+|++..++.|.. +++|++|+|++|++++.
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~------L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS------LSHLSTLILTGNPIQSL 115 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT------CTTCCEEECTTCCCCEE
T ss_pred ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC------CCCCCEEEccCCcCCCC
Confidence 4666654 48999999999999 899889999999999999999999888777764 45999999999999986
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccc-ccccccCCCCCcEEEcccCccccCCCcCccC
Q 040254 122 VPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGF-ISNDIINLTSLLVLELYSKELIGSIPRDIGK 200 (555)
Q Consensus 122 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 200 (555)
.+.+|.++++|++|++++|++.+..+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 677899999999999999998877667799999999999999999875 4677899999999999999998887777765
Q ss_pred CCCC----CeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEc------------------
Q 040254 201 LTNL----KYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDL------------------ 258 (555)
Q Consensus 201 l~~L----~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l------------------ 258 (555)
+.++ ..++++.|.+....+..+ ....++.+++.+|..........+..+..++...+
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred hhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 5443 468889998885444333 33456677777664432222233333444333332
Q ss_pred ---------------------------------------ccccccccccccccCCCCCcEEEcccceecccCChhhhhcc
Q 040254 259 ---------------------------------------YINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLK 299 (555)
Q Consensus 259 ---------------------------------------~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 299 (555)
.++.+.. ...+.....++.|++.++.+.+..
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~-------- 344 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFP-------- 344 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCC--------
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcC--------
Confidence 2221111 011222233333333333332111
Q ss_pred cccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccc--ccchhhhCCCCCcEEEccCCccccccC
Q 040254 300 SLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG--QVPLWLSKLTKLEVLLLSGNQITGSIP 377 (555)
Q Consensus 300 ~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~ 377 (555)
...+..++.+.+..|........ ..+++|+.+++++|.+.. ..+..+..+.+|+.+++..+... ..+
T Consensus 345 ---~~~l~~L~~l~l~~n~~~~~~~~-------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~ 413 (635)
T 4g8a_A 345 ---TLKLKSLKRLTFTSNKGGNAFSE-------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMS 413 (635)
T ss_dssp ---CCBCTTCCEEEEESCCSCCBCCC-------CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EEC
T ss_pred ---cccchhhhhcccccccCCCCccc-------ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccc
Confidence 11223455555555544433221 346788888888887653 34556677788888888888776 344
Q ss_pred ccccCCCCCcEEEccCccCccccc----hhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccC
Q 040254 378 GWFGNLPSLFYFALSQNNISGEFP----KELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLAN 453 (555)
Q Consensus 378 ~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~ 453 (555)
..+..+++|+.++++++......+ ..+.+++.+++..|.+....... .........+++++
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~---------------~~~~~~L~~L~Ls~ 478 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------------FNGLSSLEVLKMAG 478 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT---------------TTTCTTCCEEECTT
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccccc---------------cccchhhhhhhhhh
Confidence 557778888888888877654332 22344445555555443222110 01112234799999
Q ss_pred cccc-ccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCC-CCCCCCCCCCccCCCc
Q 040254 454 NSLS-GRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPS-GGQLHTFPPSSFEGNP 531 (555)
Q Consensus 454 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~-~~~~~~l~~~~~~gNp 531 (555)
|.+. +..|..|..+++|++|+|++|+|++.+|..|..+++|++|+|++|+|+ +..|. ...+..+..+++++|.
T Consensus 479 N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~-----~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-----SLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-----BCCCGGGTTCTTCCEEECTTSC
T ss_pred cccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC-----CCChhHHhCCCCCCEEECCCCc
Confidence 9854 457888999999999999999999999999999999999999999997 23332 1345677777888875
Q ss_pred CC
Q 040254 532 EF 533 (555)
Q Consensus 532 ~~ 533 (555)
..
T Consensus 554 l~ 555 (635)
T 4g8a_A 554 IM 555 (635)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-34 Score=296.97 Aligned_cols=313 Identities=24% Similarity=0.284 Sum_probs=206.4
Q ss_pred CCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEcc
Q 040254 35 MNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFS 114 (555)
Q Consensus 35 ~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls 114 (555)
...++.+.++. ..+++++.|+++++.+. .+|. +..+++|++|++++|.+++..+ +. .+++|++|+++
T Consensus 32 ~~~~~~~~i~~--~~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~------~l~~L~~L~l~ 98 (466)
T 1o6v_A 32 GKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LK------NLTKLVDILMN 98 (466)
T ss_dssp TCSSTTSEECH--HHHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEECC
T ss_pred cccccccccCh--hHhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hh------ccccCCEEECC
Confidence 33444444432 34678999999999887 6774 7779999999999999886543 32 56699999999
Q ss_pred CCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCC
Q 040254 115 YNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSI 194 (555)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 194 (555)
+|.+.+. +. +.++++|++|++++|.+... + .+.++++|++|++++|.++.. ..+..+++|++|+++ +.+...
T Consensus 99 ~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~- 170 (466)
T 1o6v_A 99 NNQIADI-TP-LANLTNLTGLTLFNNQITDI-D-PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL- 170 (466)
T ss_dssp SSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC-
T ss_pred CCccccC-hh-hcCCCCCCEEECCCCCCCCC-h-HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc-
Confidence 9999864 33 88999999999998876654 3 288899999999999988864 348888999999986 444333
Q ss_pred CcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCC
Q 040254 195 PRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSC 274 (555)
Q Consensus 195 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~ 274 (555)
..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+
T Consensus 171 -~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l 242 (466)
T 1o6v_A 171 -KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASL 242 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred -hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcC
Confidence 2377888899999988888743 347778888888888887764322 56677888888888877653 346667
Q ss_pred CCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccch
Q 040254 275 RLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPL 354 (555)
Q Consensus 275 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 354 (555)
++|+.|++++|.+.+..+ +..+++|+.|++++|.+....+ + ..+++|+.|++++|++++..+
T Consensus 243 ~~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~l~~n~l~~~~~--~-----~~l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP----------LSGLTKLTELKLGANQISNISP--L-----AGLTALTNLELNENQLEDISP- 304 (466)
T ss_dssp TTCSEEECCSSCCCCCGG----------GTTCTTCSEEECCSSCCCCCGG--G-----TTCTTCSEEECCSSCCSCCGG-
T ss_pred CCCCEEECCCCccccchh----------hhcCCCCCEEECCCCccCcccc--c-----cCCCccCeEEcCCCcccCchh-
Confidence 777777777776653221 2334455555555555444322 1 334445555555554443222
Q ss_pred hhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc
Q 040254 355 WLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397 (555)
Q Consensus 355 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 397 (555)
+..+++|++|++++|++.+..+ +..+++|++|++++|+++
T Consensus 305 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred -hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 3444455555555554443332 344444555555444444
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-35 Score=301.43 Aligned_cols=392 Identities=20% Similarity=0.214 Sum_probs=215.4
Q ss_pred eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCC-------------CCEEEccCCcCccccCC
Q 040254 28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTL-------------LEIIDLSYNSLSGELTG 94 (555)
Q Consensus 28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~-------------L~~L~Ls~n~i~~~~~~ 94 (555)
.+..+.+++|.+ +.+|.+|+++++|++|++++|.+.+.+|.. +..+++ +++|++++|++++.+.
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~- 88 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE- 88 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCCC-
Confidence 345566777777 778888888888888888888777666654 333444 4788888887775321
Q ss_pred CCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccc
Q 040254 95 LIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDI 174 (555)
Q Consensus 95 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 174 (555)
++ ++|++|++++|.+++ +|.. .++|++|++++|.+.+ ++.. .++|++|++++|.++++ | .+
T Consensus 89 -~~--------~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p-~~ 149 (454)
T 1jl5_A 89 -LP--------PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P-EL 149 (454)
T ss_dssp -CC--------TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C-CC
T ss_pred -Cc--------CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c-cc
Confidence 11 278888888888775 5543 3678888888776554 2211 15778888888887763 3 47
Q ss_pred cCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCc
Q 040254 175 INLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE 254 (555)
Q Consensus 175 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 254 (555)
.++++|++|++++|.+.+ +|..+ ++|++|++++|.+++ +| .+..+++|++|++++|.+.+ ++. ..++|+
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~ 218 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLE 218 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCC
T ss_pred CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCccc
Confidence 778888888888887764 44332 578888888887774 44 47777888888888877763 331 225778
Q ss_pred EEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCC
Q 040254 255 TIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG 334 (555)
Q Consensus 255 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 334 (555)
.|++++|.++. .+ .+..+++|++|++++|++.+ +|.. .++|+.+++++|.+++.+ ..
T Consensus 219 ~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~~-----------~~~L~~L~l~~N~l~~l~---------~~ 275 (454)
T 1jl5_A 219 SIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPDL-----------PPSLEALNVRDNYLTDLP---------EL 275 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCSC-----------CTTCCEEECCSSCCSCCC---------CC
T ss_pred EEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-cccc-----------ccccCEEECCCCcccccC---------cc
Confidence 88888877763 33 36777788888888777763 3221 246777777777776643 22
Q ss_pred CCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhh
Q 040254 335 FQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQ 414 (555)
Q Consensus 335 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~ 414 (555)
+++|++|++++|.+++ ++. ..++|++|++++|++++ ++. ..++|++|++++|++++ +|..+.+++
T Consensus 276 ~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~~~~L~------ 340 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPALPPRLE------ 340 (454)
T ss_dssp CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCCCTTCC------
T ss_pred cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-ccccCCcCC------
Confidence 3667777777777764 221 12567777777777763 221 12477777777777774 444433333
Q ss_pred ccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCcccee--ecchhhhCC-
Q 040254 415 NKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAG--SIPNQISQL- 491 (555)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l- 491 (555)
.|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 341 ---------------------------------~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 341 ---------------------------------RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLR 383 (454)
T ss_dssp ---------------------------------EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred ---------------------------------EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence 4666666666 3444 35667777777777776 566666655
Q ss_pred ------------ccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCC
Q 040254 492 ------------TILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCS 535 (555)
Q Consensus 492 ------------~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~ 535 (555)
++|++|++++|+++. + +.+|. ++..+.+.+|.+.|.
T Consensus 384 ~n~~~~~i~~~~~~L~~L~ls~N~l~~--~-~~iP~-----sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 384 MNSHLAEVPELPQNLKQLHVETNPLRE--F-PDIPE-----SVEDLRMNSERVVDP 431 (454)
T ss_dssp CCC-----------------------------------------------------
T ss_pred hcccccccccccCcCCEEECCCCcCCc--c-ccchh-----hHhheeCcCcccCCc
Confidence 789999999999871 1 35664 355566667665554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.1e-34 Score=293.22 Aligned_cols=345 Identities=26% Similarity=0.335 Sum_probs=287.7
Q ss_pred cCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcC
Q 040254 74 FLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAA 153 (555)
Q Consensus 74 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 153 (555)
.++++++|+++++.+... +.+. .+++|++|++++|.+++. +. +.++++|++|++++|.+....+ +.++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-----~~~~---~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-----DGVE---YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-----TTGG---GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred HhccccEEecCCCCCccC-----cchh---hhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCC
Confidence 367899999999988742 2222 567999999999999964 44 9999999999999988776544 8999
Q ss_pred CCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEEC
Q 040254 154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNL 233 (555)
Q Consensus 154 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 233 (555)
++|++|++++|.+++..+ +..+++|++|++++|.+... + .+..+++|++|+++ +.+... + .+..+++|++|++
T Consensus 112 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l 184 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDI 184 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEEC
Confidence 999999999999988644 89999999999999998753 3 48899999999997 445423 2 3889999999999
Q ss_pred cCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEE
Q 040254 234 MGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLF 313 (555)
Q Consensus 234 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~ 313 (555)
++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+. + .+..+++|+.|+
T Consensus 185 ~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~---------~l~~l~~L~~L~ 249 (466)
T 1o6v_A 185 SSNKVS-DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G---------TLASLTNLTDLD 249 (466)
T ss_dssp CSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G---------GGGGCTTCSEEE
T ss_pred cCCcCC-CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h---------hhhcCCCCCEEE
Confidence 999987 343 47889999999999999987654 77899999999999988742 1 245678999999
Q ss_pred eccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccC
Q 040254 314 LTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQ 393 (555)
Q Consensus 314 l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 393 (555)
+++|.+.+..+ + ..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|++|++++
T Consensus 250 l~~n~l~~~~~--~-----~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 250 LANNQISNLAP--L-----SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp CCSSCCCCCGG--G-----TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred CCCCccccchh--h-----hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 99999987654 2 678999999999999985444 7889999999999999986544 78899999999999
Q ss_pred ccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCee
Q 040254 394 NNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVL 473 (555)
Q Consensus 394 n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L 473 (555)
|++++..| +..++.|. .|++++|++++. ..+..+++|++|
T Consensus 319 n~l~~~~~--~~~l~~L~------------------------------------~L~l~~n~l~~~--~~l~~l~~L~~L 358 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQ------------------------------------RLFFYNNKVSDV--SSLANLTNINWL 358 (466)
T ss_dssp SCCSCCGG--GGGCTTCC------------------------------------EEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CcCCCchh--hccCccCC------------------------------------EeECCCCccCCc--hhhccCCCCCEE
Confidence 99986654 55555555 599999999864 468899999999
Q ss_pred eCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 474 DLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 474 ~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
++++|++++..| +..+++|++|++++|+++
T Consensus 359 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred eCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 999999998777 889999999999999987
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.5e-35 Score=300.95 Aligned_cols=332 Identities=20% Similarity=0.171 Sum_probs=253.6
Q ss_pred CCCCceEecccCc--ceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEc
Q 040254 6 AAGGQIISCHTEK--SILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDL 83 (555)
Q Consensus 6 ~~~~~~~~c~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 83 (555)
++++..|.|.... +.|.. ++++ .+|..+. +++++|+|++|.+. .++...|..+++|++|+|
T Consensus 1 ~~Cp~~C~C~~~~~~v~c~~-------------~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 63 (477)
T 2id5_A 1 TGCPPRCECSAQDRAVLCHR-------------KRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELEL 63 (477)
T ss_dssp CCCSTTCEEETTTTEEECCS-------------CCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcccCCCeECCCCCEEEeCC-------------CCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEEC
Confidence 4678888897642 23333 3332 4555553 58999999999998 677778899999999999
Q ss_pred cCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec
Q 040254 84 SYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF 163 (555)
Q Consensus 84 s~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 163 (555)
++|.+++..+..|.. +++|++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus 64 ~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~ 137 (477)
T 2id5_A 64 NENIVSAVEPGAFNN------LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137 (477)
T ss_dssp TTSCCCEECTTTTTT------CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC
T ss_pred CCCccCEeChhhhhC------CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC
Confidence 999999877777764 44899999999999876666788999999999999988888888888899999999999
Q ss_pred ccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccC
Q 040254 164 NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLS 243 (555)
Q Consensus 164 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 243 (555)
|.++.+.+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++
T Consensus 138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 99988888888899999999999998876666668888889999999888887777778888888888888877665555
Q ss_pred cccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCC
Q 040254 244 AYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEAT 323 (555)
Q Consensus 244 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~ 323 (555)
...+. ..+|+.|++++|.++......+..+++|+.|++++|.+.+. .
T Consensus 218 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------------------~ 264 (477)
T 2id5_A 218 PNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--------------------------------E 264 (477)
T ss_dssp TTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE--------------------------------C
T ss_pred ccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc--------------------------------C
Confidence 33332 34677777777776655555566666666666666665532 2
Q ss_pred CccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCcc
Q 040254 324 PNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG 398 (555)
Q Consensus 324 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 398 (555)
...+ ..+++|+.|++++|++++..+.++..+++|++|++++|++++..+..|..+++|++|++++|++..
T Consensus 265 ~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 265 GSML-----HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTSC-----TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred hhhc-----cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 2222 456677788888887777777778888888888888888886666677788888888888888763
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=298.43 Aligned_cols=278 Identities=18% Similarity=0.142 Sum_probs=145.2
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
++++|++++|.+++..+..|.++++|++|++++|.+....|..|.++++|++|++++|.++.+.+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 45555555555554444455555555555555555544445555555555555555555555444455555666666666
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 266 (555)
+|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+.
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEe
Confidence 66555555555555666666666666665555555556666666666666555 34434455666666666666666655
Q ss_pred ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254 267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346 (555)
Q Consensus 267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 346 (555)
....+..+++|++|++++|...+.++..... ..+|+.|++++|.++..+...+ ..+++|+.|++++|
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------GLNLTSLSITHCNLTAVPYLAV-----RHLVYLRFLNLSYN 258 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------TCCCSEEEEESSCCCSCCHHHH-----TTCTTCCEEECCSS
T ss_pred ChhhcccCcccceeeCCCCccccccCccccc--------CccccEEECcCCcccccCHHHh-----cCccccCeeECCCC
Confidence 5555666666666666665544333322111 1134444444443333222111 33444555555555
Q ss_pred ccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCcc
Q 040254 347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG 398 (555)
Q Consensus 347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 398 (555)
.+++..+..+..+++|++|++++|++.+..+..|..+++|++|+|++|++++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 5444444444445555555555555554444445555555555555555443
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.9e-35 Score=297.13 Aligned_cols=381 Identities=22% Similarity=0.213 Sum_probs=264.2
Q ss_pred eeeeeccCCCCCccccCCccccCCCCC-------------CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccC
Q 040254 27 FNILMQPAMNKLVQRYHLPSIGNLTHI-------------SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELT 93 (555)
Q Consensus 27 ~~~~~~~~~~~~i~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~ 93 (555)
..+..+++++|.+.|.+|..++++++| ++|++++|.++ .+|. ..++|++|++++|++++ .|
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp 107 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LP 107 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CC
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCc-cc
Confidence 356677888899999999999998865 99999999998 6775 24799999999999996 33
Q ss_pred CCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccccc
Q 040254 94 GLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISND 173 (555)
Q Consensus 94 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 173 (555)
.. ..+|++|++++|.+++ ++.. .++|++|++++|.+.+ +| ++.++++|++|++++|+++++ +..
T Consensus 108 ~~---------~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~~ 171 (454)
T 1jl5_A 108 EL---------PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PDL 171 (454)
T ss_dssp CC---------CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CCC
T ss_pred cc---------cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CCC
Confidence 22 2489999999999985 3332 2799999999998776 77 699999999999999999874 332
Q ss_pred ccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCC
Q 040254 174 IINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQL 253 (555)
Q Consensus 174 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 253 (555)
..+|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+. .++ .+..+++|
T Consensus 172 ---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp--~~~~l~~L 239 (454)
T 1jl5_A 172 ---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP--ELQNLPFL 239 (454)
T ss_dssp ---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTC
T ss_pred ---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc--ccCCCCCC
Confidence 3599999999999976 55 58999999999999999984 4443 258999999999988 676 38899999
Q ss_pred cEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccC
Q 040254 254 ETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISD 333 (555)
Q Consensus 254 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 333 (555)
+.|++++|.+++.. . ..++|++|++++|++.+ +|.. .++|+.+++++|.+++.+ .
T Consensus 240 ~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~-l~~~-----------~~~L~~L~ls~N~l~~l~---------~ 294 (454)
T 1jl5_A 240 TTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTD-LPEL-----------PQSLTFLDVSENIFSGLS---------E 294 (454)
T ss_dssp CEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSC-CCCC-----------CTTCCEEECCSSCCSEES---------C
T ss_pred CEEECCCCcCCccc-c---cccccCEEECCCCcccc-cCcc-----------cCcCCEEECcCCccCccc---------C
Confidence 99999999998633 2 24899999999999884 4332 258999999999988753 2
Q ss_pred CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE 413 (555)
Q Consensus 334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~ 413 (555)
..++|+.|++++|++++ ++. ..++|++|++++|++++ +|.. +++|++|++++|+++ .+|..+.+++.|++.
T Consensus 295 ~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~~l~~L~~L~L~ 365 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPELPQNLKQLHVE 365 (454)
T ss_dssp CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECC
T ss_pred cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccchhhhccEEECC
Confidence 23689999999999884 221 12589999999999995 5543 589999999999998 455555666666666
Q ss_pred hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCcccee--ecchhhhCC
Q 040254 414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAG--SIPNQISQL 491 (555)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l 491 (555)
+|.+...+. +|.. .-+++.|.+.+.+|.. +++|++|++++|.+++ .+|
T Consensus 366 ~N~l~~l~~-ip~~--------------------l~~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------ 415 (454)
T 1jl5_A 366 YNPLREFPD-IPES--------------------VEDLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ 415 (454)
T ss_dssp SSCCSSCCC-CCTT--------------------CCEEECCC--------------------------------------
T ss_pred CCCCCcCCC-ChHH--------------------HHhhhhcccccccccc---cCcCCEEECCCCcCCccccch------
Confidence 666544221 1100 0223344555555542 4789999999999996 444
Q ss_pred ccCCeeeCCCCCCC
Q 040254 492 TILERLDLSKNHLS 505 (555)
Q Consensus 492 ~~L~~L~Ls~N~l~ 505 (555)
++++.|.+++|.+.
T Consensus 416 ~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 416 ESVEDLRMNSERVV 429 (454)
T ss_dssp --------------
T ss_pred hhHhheeCcCcccC
Confidence 35777888888875
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-34 Score=294.83 Aligned_cols=222 Identities=19% Similarity=0.148 Sum_probs=188.8
Q ss_pred CCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC
Q 040254 37 KLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN 116 (555)
Q Consensus 37 ~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n 116 (555)
..+.+..+.++.++++|++|++++|.+. .+| .|..+++|++|++++|++++.. +. .+++|++|++++|
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~------~l~~L~~L~Ls~N 95 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD---LS------QNTNLTYLACDSN 95 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC---CT------TCTTCSEEECCSS
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc---cc------cCCCCCEEECcCC
Confidence 3445566668889999999999999998 566 3788999999999999998742 22 5669999999999
Q ss_pred cCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCc
Q 040254 117 DFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPR 196 (555)
Q Consensus 117 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 196 (555)
.+++ ++ ++++++|++|++++|.+.+ ++ +..+++|++|++++|.++++ .+..+++|++|++++|...+.+
T Consensus 96 ~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 96 KLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--
T ss_pred CCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--
Confidence 9996 43 8899999999999998776 44 88999999999999999985 3889999999999999765555
Q ss_pred CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCC
Q 040254 197 DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL 276 (555)
Q Consensus 197 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 276 (555)
.+..+++|++|++++|.+++ ++ +..+++|++|++++|.+.+ + .+..+++|+.|++++|.+++. + +..+++
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~ 234 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQ 234 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCccccc-C--ccccCC
Confidence 47789999999999999985 44 7889999999999999884 3 378899999999999999974 3 788999
Q ss_pred CcEEEcccceecccC
Q 040254 277 LTALRLACNQLEGQI 291 (555)
Q Consensus 277 L~~L~l~~n~~~~~~ 291 (555)
|+.|++++|++.+..
T Consensus 235 L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 235 LTYFDCSVNPLTELD 249 (457)
T ss_dssp CSEEECCSSCCSCCC
T ss_pred CCEEEeeCCcCCCcC
Confidence 999999999988653
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.8e-34 Score=286.68 Aligned_cols=335 Identities=18% Similarity=0.187 Sum_probs=181.7
Q ss_pred CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254 75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA 154 (555)
Q Consensus 75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 154 (555)
++++++|+++++.++..++..+. .+++|++|++++|.+++..+.+|.++++|++|++++|.+....|..+.+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLD------SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHH------HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchhhCChhHhc------ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 45566666666555533322222 233555555555555544444555555555555555554444444445555
Q ss_pred CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM 234 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 234 (555)
+|++|++++|.++.+.+..|..+++|++|++++|.+....+..+..+++|++|++++|.+++.
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------- 180 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------- 180 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-----------------
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-----------------
Confidence 555555555555444333344444455555544444444344444444444444444444321
Q ss_pred CccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEe
Q 040254 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL 314 (555)
Q Consensus 235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l 314 (555)
.+..+++|+.+++++|.+++. ...+.|++|++++|.+.
T Consensus 181 -----------~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~-------------------------- 218 (390)
T 3o6n_A 181 -----------DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN-------------------------- 218 (390)
T ss_dssp -----------CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC--------------------------
T ss_pred -----------ccccccccceeeccccccccc-----CCCCcceEEECCCCeee--------------------------
Confidence 123334444444444443321 12234455555544433
Q ss_pred ccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCc
Q 040254 315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394 (555)
Q Consensus 315 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 394 (555)
..+. ..+++|+.|++++|.+++. .++..+++|++|++++|++.+..|..+..+++|++|++++|
T Consensus 219 ------~~~~--------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 219 ------VVRG--------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp ------EEEC--------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred ------eccc--------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 1110 1234566666666666532 45666667777777777776666666667777777777777
Q ss_pred cCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeee
Q 040254 395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLD 474 (555)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ 474 (555)
++++ ++..+..++.|. .|++++|+++ .+|..+..+++|++|+
T Consensus 283 ~l~~-~~~~~~~l~~L~------------------------------------~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 283 RLVA-LNLYGQPIPTLK------------------------------------VLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CCCE-EECSSSCCTTCC------------------------------------EEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred cCcc-cCcccCCCCCCC------------------------------------EEECCCCcce-ecCccccccCcCCEEE
Confidence 6663 233333333333 4667777666 4566667778888899
Q ss_pred CCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCcc
Q 040254 475 LGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDI 537 (555)
Q Consensus 475 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~ 537 (555)
+++|+|++. + +..+++|++|++++|+++...+.. .+..+....+.+++..|..+
T Consensus 325 L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~------~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 325 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA------LFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH------HTTTCCTTTBCCCCSCCCTT
T ss_pred CCCCcccee-C--chhhccCCEEEcCCCCccchhHHH------HHHHHHhhcccccCceeccc
Confidence 999988844 3 667888999999999886322221 23345555677888888753
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-32 Score=276.90 Aligned_cols=312 Identities=19% Similarity=0.168 Sum_probs=266.0
Q ss_pred CCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccC
Q 040254 49 NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGN 128 (555)
Q Consensus 49 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 128 (555)
.++++++|+++++.+. .+|..+|..+++|++|++++|.+++..+..+.. +++|++|++++|.+++..+..+++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------AHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTT------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccC------CCCcCEEECCCCCCCcCCHHHhcC
Confidence 4689999999999998 899999999999999999999999877766654 459999999999999877888999
Q ss_pred CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeee
Q 040254 129 CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL 208 (555)
Q Consensus 129 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 208 (555)
+++|++|++++|.+....+..|.++++|++|++++|.++.+.+..+..+++|++|++++|.+... .+..+++|++|+
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence 99999999999987755445578999999999999999998888899999999999999998754 256679999999
Q ss_pred CccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceec
Q 040254 209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLE 288 (555)
Q Consensus 209 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 288 (555)
+++|.+.+ +...++|++|++++|.+. .++. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCC-EEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cccccccc-----cCCCCcceEEECCCCeee-eccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 99998873 234568999999999987 3432 3457999999999999864 56889999999999999998
Q ss_pred ccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEcc
Q 040254 289 GQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLS 368 (555)
Q Consensus 289 ~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 368 (555)
+..|..+ ..+++|+.|++++|.++..+... ..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 262 ~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 262 KIMYHPF--------VKMQRLERLYISNNRLVALNLYG------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326 (390)
T ss_dssp EEESGGG--------TTCSSCCEEECCSSCCCEEECSS------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECC
T ss_pred CcChhHc--------cccccCCEEECCCCcCcccCccc------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECC
Confidence 6656554 45678999999999998764322 56789999999999998 567778889999999999
Q ss_pred CCccccccCccccCCCCCcEEEccCccCccc
Q 040254 369 GNQITGSIPGWFGNLPSLFYFALSQNNISGE 399 (555)
Q Consensus 369 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 399 (555)
+|+++.. + +..+++|++|++++|++...
T Consensus 327 ~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 327 HNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCcccee-C--chhhccCCEEEcCCCCccch
Confidence 9999854 3 67789999999999999753
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-33 Score=294.09 Aligned_cols=335 Identities=19% Similarity=0.190 Sum_probs=186.2
Q ss_pred CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254 75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA 154 (555)
Q Consensus 75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 154 (555)
+++++.|++++|.+...++..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLD------SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHH------HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHc------cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 45556666666555543332222 223555555555555544444555555555555555554444444444555
Q ss_pred CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM 234 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 234 (555)
+|++|++++|.++.+.+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+.
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------- 186 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------- 186 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------------
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-----------------
Confidence 555555555555444443444444444444444444444444444444444444444444321
Q ss_pred CccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEe
Q 040254 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL 314 (555)
Q Consensus 235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l 314 (555)
+ +..+++|+.|++++|.+.+ +...+.|+.|++++|.+..
T Consensus 187 --------~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~------------------------- 225 (597)
T 3oja_B 187 --------D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV------------------------- 225 (597)
T ss_dssp --------C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE-------------------------
T ss_pred --------C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc-------------------------
Confidence 1 2333444444444444432 1222345555555554431
Q ss_pred ccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCc
Q 040254 315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394 (555)
Q Consensus 315 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 394 (555)
... ..+++|+.|++++|.+++ +.++..+++|++|++++|.+.+..|..|..+++|++|+|++|
T Consensus 226 -------~~~--------~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 226 -------VRG--------PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp -------EEC--------SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred -------ccc--------ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 110 112456666666666653 355666777777777777777666777777777777777777
Q ss_pred cCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeee
Q 040254 395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLD 474 (555)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ 474 (555)
.+++ +|..+..++.|. .|++++|.++ .+|..+..+++|+.|+
T Consensus 289 ~l~~-l~~~~~~l~~L~------------------------------------~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 289 RLVA-LNLYGQPIPTLK------------------------------------VLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp CCCE-EECSSSCCTTCC------------------------------------EEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCC-CCcccccCCCCc------------------------------------EEECCCCCCC-ccCcccccCCCCCEEE
Confidence 7764 333333333333 4777777777 5666677788889999
Q ss_pred CCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCcc
Q 040254 475 LGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDI 537 (555)
Q Consensus 475 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~ 537 (555)
|++|.+++. + +..+++|+.|+|++|+++...+.+ .+..+....+.+++..|+.+
T Consensus 331 L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~------~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 331 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA------LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH------HTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHH------HHHHHhhhccccccccCCcc
Confidence 999998844 3 567789999999999986222222 23345556677888888763
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.8e-32 Score=276.85 Aligned_cols=305 Identities=18% Similarity=0.166 Sum_probs=232.0
Q ss_pred ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254 26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105 (555)
Q Consensus 26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 105 (555)
...+..+++++|.+++. | .|..+++|++|++++|.++ .++ +..+++|++|++++|++++.. +. .+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~---~~------~l 105 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD---VT------PL 105 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC---CT------TC
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee---cC------CC
Confidence 34677889999999986 4 7999999999999999998 565 778999999999999999642 22 56
Q ss_pred CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEc
Q 040254 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLEL 185 (555)
Q Consensus 106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 185 (555)
++|++|++++|.+++ ++ ++.+++|++|++++|.+.+. .+.++++|++|++++|...+.. .+..+++|++|++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 699999999999996 44 88999999999999988774 3788999999999999543333 5788999999999
Q ss_pred ccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254 186 YSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 186 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
++|.+.+ +| +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+ ++ +..+++|+.|++++|.+++
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCC
Confidence 9999976 44 78899999999999999854 48889999999999999985 55 7789999999999999987
Q ss_pred cccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccC
Q 040254 266 SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAG 345 (555)
Q Consensus 266 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 345 (555)
.. ...+++|+.|+++.+.+. .+++++|.+.+..+. ..+++|+.|++++
T Consensus 248 ~~---~~~l~~L~~L~l~~n~L~----------------------~L~l~~n~~~~~~~~-------~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 248 LD---VSTLSKLTTLHCIQTDLL----------------------EIDLTHNTQLIYFQA-------EGCRKIKELDVTH 295 (457)
T ss_dssp CC---CTTCTTCCEEECTTCCCS----------------------CCCCTTCTTCCEEEC-------TTCTTCCCCCCTT
T ss_pred cC---HHHCCCCCEEeccCCCCC----------------------EEECCCCccCCcccc-------cccccCCEEECCC
Confidence 64 456778888887776443 223333332211110 2344555555555
Q ss_pred cccccccch--------hhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCcc
Q 040254 346 CQLTGQVPL--------WLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG 398 (555)
Q Consensus 346 n~i~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 398 (555)
|...+.+|. .+..+++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 543333321 133446777777777777753 2 6677777777777777764
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-31 Score=263.64 Aligned_cols=128 Identities=25% Similarity=0.372 Sum_probs=88.3
Q ss_pred CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE 413 (555)
Q Consensus 334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~ 413 (555)
.+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..++.|.
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~-- 290 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN-- 290 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS--
T ss_pred cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC--
Confidence 34566666666666653322 66677777777777777643 3466777777777777777643 2344444444
Q ss_pred hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCcc
Q 040254 414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI 493 (555)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 493 (555)
.|++++|++++..+..+..+++|++|++++|++++..| +..+++
T Consensus 291 ----------------------------------~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 334 (347)
T 4fmz_A 291 ----------------------------------SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334 (347)
T ss_dssp ----------------------------------EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred ----------------------------------EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence 47777777777777778888899999999999986666 788899
Q ss_pred CCeeeCCCCCCC
Q 040254 494 LERLDLSKNHLS 505 (555)
Q Consensus 494 L~~L~Ls~N~l~ 505 (555)
|++|++++|+|+
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 999999999885
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-32 Score=289.26 Aligned_cols=310 Identities=18% Similarity=0.175 Sum_probs=203.2
Q ss_pred CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM 234 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 234 (555)
+++.++++++.+..+++..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 34444444444444433334444444444444444444433344444444444444444444333444444444444444
Q ss_pred CccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEe
Q 040254 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL 314 (555)
Q Consensus 235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l 314 (555)
+|.+. .++...|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.. +..+++|+.+++
T Consensus 132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~l~~L~~L~l 199 (597)
T 3oja_B 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----------LSLIPSLFHANV 199 (597)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----------GGGCTTCSEEEC
T ss_pred CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----------hhhhhhhhhhhc
Confidence 44444 333333444455555555555554444444555555555555555544221 222345566666
Q ss_pred ccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCc
Q 040254 315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394 (555)
Q Consensus 315 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 394 (555)
++|.++.. ...++|+.|++++|.+.... ..+ .++|+.|++++|.+++ +..+..+++|++|+|++|
T Consensus 200 ~~n~l~~l----------~~~~~L~~L~ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 200 SYNLLSTL----------AIPIAVEELDASHNSINVVR-GPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp CSSCCSEE----------ECCTTCSEEECCSSCCCEEE-CSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSS
T ss_pred ccCccccc----------cCCchhheeeccCCcccccc-ccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCC
Confidence 66655443 34567999999999987433 322 3689999999999985 367889999999999999
Q ss_pred cCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeee
Q 040254 395 NISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLD 474 (555)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~ 474 (555)
.+++..|..+..++.|. .|++++|.+++ +|..+..+++|++|+
T Consensus 265 ~l~~~~~~~~~~l~~L~------------------------------------~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 265 ELEKIMYHPFVKMQRLE------------------------------------RLYISNNRLVA-LNLYGQPIPTLKVLD 307 (597)
T ss_dssp CCCEEESGGGTTCSSCC------------------------------------EEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred ccCCCCHHHhcCccCCC------------------------------------EEECCCCCCCC-CCcccccCCCCcEEE
Confidence 99988888888888877 59999999995 577778899999999
Q ss_pred CCCccceeecchhhhCCccCCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCc
Q 040254 475 LGNNNFAGSIPNQISQLTILERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSD 536 (555)
Q Consensus 475 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~ 536 (555)
|++|.++ .+|..+..+++|+.|+|++|+|+ .+| ...+..+..++++||||.|++
T Consensus 308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~------~~~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV------TLK-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCC------CCC-CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCCC-ccCcccccCCCCCEEECCCCCCC------CcC-hhhcCCCCEEEeeCCCCCChh
Confidence 9999999 77888899999999999999997 223 335678889999999999975
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.3e-31 Score=261.47 Aligned_cols=308 Identities=20% Similarity=0.240 Sum_probs=246.4
Q ss_pred cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254 46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR 125 (555)
Q Consensus 46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 125 (555)
.+..+++|++|+++++.+. .++. +..+++|++|++++|++++..+ +. .+++|++|++++|.+++ + ..
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~------~l~~L~~L~L~~n~i~~-~-~~ 105 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LS------NLVKLTNLYIGTNKITD-I-SA 105 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEECCSSCCCC-C-GG
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hh------cCCcCCEEEccCCcccC-c-hH
Confidence 4567889999999999987 6764 7789999999999999885433 22 56699999999999885 3 46
Q ss_pred ccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254 126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK 205 (555)
Q Consensus 126 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 205 (555)
+.++++|++|++++|.+... +. +..+++|++|++++|...... ..+..+++|++|++++|.+....+ +..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred HcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence 88999999999998887654 33 888999999999999654433 348899999999999998865433 77889999
Q ss_pred eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccc
Q 040254 206 YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285 (555)
Q Consensus 206 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 285 (555)
+|++++|.+.+. +. +..+++|+++++++|.+.+ .+ .+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 181 ~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 181 SLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITD-IT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp EEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEccCCccccc-cc-ccCCCccceeecccCCCCC-Cc--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC
Confidence 999999998743 33 7888999999999998873 33 27788999999999999886544 788899999999999
Q ss_pred eecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEE
Q 040254 286 QLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVL 365 (555)
Q Consensus 286 ~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 365 (555)
.+.+. + .+..+++|+.+++++|.++... .+ ..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 254 ~l~~~--~--------~~~~l~~L~~L~l~~n~l~~~~--~~-----~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 254 QISDI--N--------AVKDLTKLKMLNVGSNQISDIS--VL-----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CCCCC--G--------GGTTCTTCCEEECCSSCCCCCG--GG-----GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred ccCCC--h--------hHhcCCCcCEEEccCCccCCCh--hh-----cCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 87742 1 2456778999999999887752 12 667889999999999988888888999999999
Q ss_pred EccCCccccccCccccCCCCCcEEEccCccCc
Q 040254 366 LLSGNQITGSIPGWFGNLPSLFYFALSQNNIS 397 (555)
Q Consensus 366 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 397 (555)
++++|++++..| +..+++|++|++++|+++
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999986655 778899999999999875
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=6.5e-32 Score=262.61 Aligned_cols=260 Identities=30% Similarity=0.470 Sum_probs=157.7
Q ss_pred CCCcEEEcccCcccc--CCCcCccCCCCCCeeeCcc-CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCc
Q 040254 178 TSLLVLELYSKELIG--SIPRDIGKLTNLKYLLLYR-NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE 254 (555)
Q Consensus 178 ~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 254 (555)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.++ ..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCCCCC
Confidence 345566666666555 5555555556666666653 55554555555555555555555555543333 2344444444
Q ss_pred EEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCC
Q 040254 255 TIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDG 334 (555)
Q Consensus 255 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 334 (555)
+|++++|.+.+..+..+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~----------------------------------------------------------- 149 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLP----------------------------------------------------------- 149 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCT-----------------------------------------------------------
T ss_pred EEeCCCCccCCcCChHHhcCC-----------------------------------------------------------
Confidence 444444444433333333334
Q ss_pred CCCccEEEccCcccccccchhhhCCC-CCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254 335 FQNLRAVSLAGCQLTGQVPLWLSKLT-KLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE 413 (555)
Q Consensus 335 ~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~ 413 (555)
+|++|++++|.+++.+|..+..++ .|++|++++|++.+..|..+..+. |++|++++|.+++..|..+..++.|.
T Consensus 150 --~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~-- 224 (313)
T 1ogq_A 150 --NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ-- 224 (313)
T ss_dssp --TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS--
T ss_pred --CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC--
Confidence 444444444444444444444444 455555555555544444444444 55555555555544444444444443
Q ss_pred hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCcc
Q 040254 414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI 493 (555)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 493 (555)
.|++++|.+++..|. +..+++|++|++++|++++.+|..+..+++
T Consensus 225 ----------------------------------~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 225 ----------------------------------KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp ----------------------------------EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ----------------------------------EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 355555555544333 566788999999999999999999999999
Q ss_pred CCeeeCCCCCCCCCcceecCCCCCCCCCCCCCccCCCcCCCCcccCCCCC
Q 040254 494 LERLDLSKNHLSENNLQGPIPSGGQLHTFPPSSFEGNPEFCSDIANRSST 543 (555)
Q Consensus 494 L~~L~Ls~N~l~~~~l~~~ip~~~~~~~l~~~~~~gNp~~c~~~~~~~~~ 543 (555)
|++|+|++|+|+ |.+|....+..+..+++.|||++|+.|+. .|.
T Consensus 270 L~~L~Ls~N~l~-----~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 270 LHSLNVSFNNLC-----GEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp CCEEECCSSEEE-----EECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred CCEEECcCCccc-----ccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence 999999999875 88998888888999999999999998774 573
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.9e-34 Score=292.60 Aligned_cols=235 Identities=14% Similarity=0.072 Sum_probs=115.3
Q ss_pred CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc-cCC
Q 040254 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL-GNC 129 (555)
Q Consensus 51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l 129 (555)
++|++|+++++.+++......|..+++|++|++++|++++.....++... ..+++|++|++++|.+.+..+..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL--RVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH--HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH--HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 45666777777665322233466677777777777766643222222211 134466666666666654222222 223
Q ss_pred C----CCcEEEccCCCCCC----CCcHhhhcCCCCCeeEeecccCccccccccc-----CCCCCcEEEcccCccccCC--
Q 040254 130 S----RLKSFQAGYSNLLR----SLPDDIYAAASLEEPSLHFNKLSGFISNDII-----NLTSLLVLELYSKELIGSI-- 194 (555)
Q Consensus 130 ~----~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~~~~~~-- 194 (555)
+ +|++|++++|.+.. .++..+..+++|++|++++|.++...+..+. ..++|++|++++|.+....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 3 56666666665542 3355556666666666666665543222221 2345666666666554322
Q ss_pred --CcCccCCCCCCeeeCccCcCcccCCcccc-----CCCCCCEEECcCccCccc----cCcccccCCCCCcEEEcccccc
Q 040254 195 --PRDIGKLTNLKYLLLYRNNLSGSLPSSMM-----NCTNLKTLNLMGNLFAGN----LSAYNFSVLSQLETIDLYINMF 263 (555)
Q Consensus 195 --~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~ 263 (555)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+... ++ ..+..+++|++|++++|.+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEeccCCcC
Confidence 22334445566666665555432211111 234555555555554421 11 2233445555555555554
Q ss_pred ccccc-----ccccCCCCCcEEEcccceec
Q 040254 264 TGSFL-----LTLTSCRLLTALRLACNQLE 288 (555)
Q Consensus 264 ~~~~~-----~~l~~~~~L~~L~l~~n~~~ 288 (555)
++... ..+..+++|++|++++|.++
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 43221 11123455555555555444
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.6e-33 Score=288.70 Aligned_cols=355 Identities=20% Similarity=0.158 Sum_probs=188.5
Q ss_pred CCCCEEEccCCcCccccCCC-CccccccCCCCCccEEEccCCcCCc----cCCccccCCCCCcEEEccCCCCCCCCcHhh
Q 040254 76 TLLEIIDLSYNSLSGELTGL-IPSLAWNHSFCSMRLLDFSYNDFSS----QVPPRLGNCSRLKSFQAGYSNLLRSLPDDI 150 (555)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 150 (555)
++|++|++++|++++..... ++ .+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~------~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLP------LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHH------HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHh------hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 45677777777766432111 11 34477777777777664 234556667777777777766544333333
Q ss_pred h-cCC----CCCeeEeecccCcc----cccccccCCCCCcEEEcccCccccCCCcCc-----cCCCCCCeeeCccCcCcc
Q 040254 151 Y-AAA----SLEEPSLHFNKLSG----FISNDIINLTSLLVLELYSKELIGSIPRDI-----GKLTNLKYLLLYRNNLSG 216 (555)
Q Consensus 151 ~-~l~----~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~l~~ 216 (555)
. .++ +|++|++++|.++. ..+..+..+++|++|++++|.+....+..+ ...++|++|++++|.++.
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2 233 57777777776663 234556666677777777666543322221 123456666666666653
Q ss_pred c----CCccccCCCCCCEEECcCccCccccCcccc-----cCCCCCcEEEccccccccc----ccccccCCCCCcEEEcc
Q 040254 217 S----LPSSMMNCTNLKTLNLMGNLFAGNLSAYNF-----SVLSQLETIDLYINMFTGS----FLLTLTSCRLLTALRLA 283 (555)
Q Consensus 217 ~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~ 283 (555)
. ++..+..+++|++|++++|.+..... ..+ ...++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHH-HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 2 23334445666666666665542211 111 1234566666666655542 23334445555555555
Q ss_pred cceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccc----cchhhhCC
Q 040254 284 CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQ----VPLWLSKL 359 (555)
Q Consensus 284 ~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l 359 (555)
+|.+.+..... ....+....++|++|++++|.++.. ++..+..+
T Consensus 236 ~n~l~~~~~~~--------------------------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 236 SNKLGDVGMAE--------------------------------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp SSBCHHHHHHH--------------------------------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred CCcCChHHHHH--------------------------------HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 55544221111 1111112345566666666655532 34445556
Q ss_pred CCCcEEEccCCccccccCcccc-----CCCCCcEEEccCccCccc----cchhhhccccchhhhccCCCCCCCCCccccC
Q 040254 360 TKLEVLLLSGNQITGSIPGWFG-----NLPSLFYFALSQNNISGE----FPKELSRLQPLVIEQNKFNRNKPDLPFFLFP 430 (555)
Q Consensus 360 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~ 430 (555)
++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..++.|.
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~------------------- 344 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL------------------- 344 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC-------------------
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc-------------------
Confidence 6666666666666543222221 124666666666666543 223333334443
Q ss_pred CCcccccccccccCCCCEEEccCccccccCChhccC-----CCCCCeeeCCCcccee----ecchhhhCCccCCeeeCCC
Q 040254 431 NQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ-----LKFLNVLDLGNNNFAG----SIPNQISQLTILERLDLSK 501 (555)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~ 501 (555)
.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++
T Consensus 345 -----------------~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 345 -----------------ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp -----------------EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred -----------------EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 4666666665443333321 4567777777776664 5566666667777777777
Q ss_pred CCCC
Q 040254 502 NHLS 505 (555)
Q Consensus 502 N~l~ 505 (555)
|+|+
T Consensus 408 N~i~ 411 (461)
T 1z7x_W 408 NCLG 411 (461)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7665
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-29 Score=248.69 Aligned_cols=288 Identities=18% Similarity=0.209 Sum_probs=184.9
Q ss_pred CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR 131 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 131 (555)
+++.++++++.+. .+|... .++|++|++++|.+++..+..+.. +++|++|++++|.+++..|.++.++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKG------LQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhC------CCCCcEEECCCCccCccCHhHhhCcCC
Confidence 6788888888777 677543 357888888888877666655543 447888888888887766777888888
Q ss_pred CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc--CCCcCccCCCCCCeeeC
Q 040254 132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG--SIPRDIGKLTNLKYLLL 209 (555)
Q Consensus 132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L 209 (555)
|++|++++|.+. .+|..+. ++|++|++++|.++.+.+..|..+++|++|++++|.+.. ..+..+..+ +|++|++
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 888888877655 4444443 677888888888777666677778888888888777743 555666666 7777888
Q ss_pred ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254 210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289 (555)
Q Consensus 210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 289 (555)
++|.+++ +|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp CSSBCSS-CCSSSC--SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred cCCCCCc-cCcccc--CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 8777773 444433 56777777777776 333345666777777777777776665556666677777777777665
Q ss_pred cCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhC------CCCCc
Q 040254 290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSK------LTKLE 363 (555)
Q Consensus 290 ~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~------l~~L~ 363 (555)
.+|..+. .+++|+.+++++|.++..+. ..+.. ...++
T Consensus 255 ~lp~~l~--------~l~~L~~L~l~~N~l~~~~~-----------------------------~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 255 RVPAGLP--------DLKLLQVVYLHTNNITKVGV-----------------------------NDFCPVGFGVKRAYYN 297 (332)
T ss_dssp BCCTTGG--------GCTTCCEEECCSSCCCBCCT-----------------------------TSSSCSSCCSSSCCBS
T ss_pred ecChhhh--------cCccCCEEECCCCCCCccCh-----------------------------hHcccccccccccccc
Confidence 4443322 23344444444444444333 33222 24556
Q ss_pred EEEccCCccc--cccCccccCCCCCcEEEccCcc
Q 040254 364 VLLLSGNQIT--GSIPGWFGNLPSLFYFALSQNN 395 (555)
Q Consensus 364 ~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~ 395 (555)
.|++++|++. +..+.+|..+++|+.+++++|+
T Consensus 298 ~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6666666655 3455556666666666666653
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-29 Score=249.28 Aligned_cols=267 Identities=21% Similarity=0.217 Sum_probs=122.5
Q ss_pred CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM 234 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 234 (555)
.+++|++++|.++++.+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+. .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 3444444444444433344444444444444444444433444444444444444444444 2222222 344455554
Q ss_pred CccCccccCcccccCCCCCcEEEcccccccc--cccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEE
Q 040254 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTG--SFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVL 312 (555)
Q Consensus 235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L 312 (555)
+|.+. .++...+..+++|+.|++++|.++. ..+..+..+ +|++|++++|++.+ +|..+. ++|+.|
T Consensus 132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~----------~~L~~L 198 (332)
T 2ft3_A 132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP----------ETLNEL 198 (332)
T ss_dssp SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC----------SSCSCC
T ss_pred CCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc----------CCCCEE
Confidence 44444 2333334444445555554444432 223333333 55555555555442 221110 233333
Q ss_pred EeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEcc
Q 040254 313 FLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALS 392 (555)
Q Consensus 313 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 392 (555)
++++|.++...+..+ ..+++|+.|++++|.+++..+.++..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 199 ~l~~n~i~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 199 HLDHNKIQAIELEDL-----LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp BCCSSCCCCCCTTSS-----TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred ECCCCcCCccCHHHh-----cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 333333333332222 33344444444444444433444444445555555555444 334444444445555555
Q ss_pred CccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccC------
Q 040254 393 QNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ------ 466 (555)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~------ 466 (555)
+|+++ +..+..|..
T Consensus 273 ~N~l~------------------------------------------------------------~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 273 TNNIT------------------------------------------------------------KVGVNDFCPVGFGVK 292 (332)
T ss_dssp SSCCC------------------------------------------------------------BCCTTSSSCSSCCSS
T ss_pred CCCCC------------------------------------------------------------ccChhHccccccccc
Confidence 44444 333333322
Q ss_pred CCCCCeeeCCCccce--eecchhhhCCccCCeeeCCCCC
Q 040254 467 LKFLNVLDLGNNNFA--GSIPNQISQLTILERLDLSKNH 503 (555)
Q Consensus 467 l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~Ls~N~ 503 (555)
.+.|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356778888888776 5667777788888888888774
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.1e-30 Score=253.88 Aligned_cols=271 Identities=20% Similarity=0.275 Sum_probs=168.0
Q ss_pred cCCCCceEecc--cCcceeeccC-ceeeeeccCCCCCccc--cCCccccCCCCCCEEEccC-CcCcCcCchhHHhcCCCC
Q 040254 5 PAAGGQIISCH--TEKSILRNHG-GFNILMQPAMNKLVQR--YHLPSIGNLTHISHLNLSH-NHVHGPLPINSFHFLTLL 78 (555)
Q Consensus 5 ~~~~~~~~~c~--~~~~~~~~~~-~~~~~~~~~~~~~i~~--~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L 78 (555)
..|.....+|. |.++.|.... ...++.++++++.+++ .+|..|.++++|++|++++ |.+.+.+|. .|..+++|
T Consensus 25 ~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L 103 (313)
T 1ogq_A 25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQL 103 (313)
T ss_dssp TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTC
T ss_pred cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCC
Confidence 34555455676 8888886431 1356667777777777 6777777777777777774 666655554 35567777
Q ss_pred CEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC-CCC
Q 040254 79 EIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA-SLE 157 (555)
Q Consensus 79 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~ 157 (555)
++|++++|++++..|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..++ .|+
T Consensus 104 ~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 104 HYLYITHTNVSGAIPDFLSQ------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp SEEEEEEECCEEECCGGGGG------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred CEEECcCCeeCCcCCHHHhC------CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 77777777776555554443 33677777777776666666666677777777776666656666666665 666
Q ss_pred eeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCcc
Q 040254 158 EPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL 237 (555)
Q Consensus 158 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 237 (555)
+|++++|.+++..+..+..++ |++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 666666666655666666665 66666666666656666666666666666666666533332 5555666666666666
Q ss_pred CccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccce
Q 040254 238 FAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ 286 (555)
Q Consensus 238 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 286 (555)
+.+.++ ..+..+++|+.|++++|.+++..+.. ..+++|+.+++++|+
T Consensus 256 l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 256 IYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEECCC-GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCcCC-hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 554444 34555556666666666555444433 445555555555554
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-28 Score=242.37 Aligned_cols=246 Identities=20% Similarity=0.286 Sum_probs=135.8
Q ss_pred CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR 131 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 131 (555)
++++++++++.+. .+|... .+.|++|++++|++++..+..+.. +++|++|++++|.+++..|..+.++++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKN------LKNLHTLILINNKISKISPGAFAPLVK 101 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTT------CTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhcc------CCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence 4555555555554 455322 245555555555555444433332 335556666655555544555555666
Q ss_pred CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc--CCCcCccCCCCCCeeeC
Q 040254 132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG--SIPRDIGKLTNLKYLLL 209 (555)
Q Consensus 132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L 209 (555)
|++|++++|.+. .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.. ..+..+..+++|++|++
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 666666555443 2333332 456666666666665555555666666666666665532 44445556666666666
Q ss_pred ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254 210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289 (555)
Q Consensus 210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 289 (555)
++|.+. .+|..+. ++|++|++++|.+.+ +....+..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 179 ~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 179 ADTNIT-TIPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp CSSCCC-SCCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred CCCccc-cCCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 666665 3333332 566666666666653 33345666666777777777666655556666777777777777666
Q ss_pred cCChhhhhcccccccCCCCCcEEEeccccCCCCC
Q 040254 290 QIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEAT 323 (555)
Q Consensus 290 ~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~ 323 (555)
.+|..+ ..+++|+.+++++|.++..+
T Consensus 254 ~lp~~l--------~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 254 KVPGGL--------ADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp SCCTTT--------TTCSSCCEEECCSSCCCCCC
T ss_pred cCChhh--------ccCCCcCEEECCCCcCCccC
Confidence 344332 22344455555555444443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.6e-29 Score=243.37 Aligned_cols=290 Identities=22% Similarity=0.252 Sum_probs=180.0
Q ss_pred CCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeC
Q 040254 130 SRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLL 209 (555)
Q Consensus 130 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 209 (555)
.++++++++++.+. .+|..+. +.+++|++++|.++++.+..|..+++|++|++++|.+.+..|..|..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36888888866544 4554442 57888888888888877777888888888888888887777777888888888888
Q ss_pred ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc--cccccccCCCCCcEEEccccee
Q 040254 210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG--SFLLTLTSCRLLTALRLACNQL 287 (555)
Q Consensus 210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~ 287 (555)
++|.++ .+|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 888877 4444433 57778888777776 4444556777777777777776643 3445556666666666666655
Q ss_pred cccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEc
Q 040254 288 EGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLL 367 (555)
Q Consensus 288 ~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 367 (555)
.. +|.. .+++|++|++++|++++..+..+..+++|++|++
T Consensus 184 ~~-l~~~---------------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 184 TT-IPQG---------------------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CS-CCSS---------------------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred cc-CCcc---------------------------------------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 42 2211 1244555555555555444455555555555555
Q ss_pred cCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCC
Q 040254 368 SGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRP 447 (555)
Q Consensus 368 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 447 (555)
++|++++..+..+..+++|++|++++|+++ .+|..+..++.|.
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~------------------------------------ 266 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ------------------------------------ 266 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC------------------------------------
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcC------------------------------------
Confidence 555555444445555555555555555555 4444444443333
Q ss_pred EEEccCccccccCChhccC------CCCCCeeeCCCcccee--ecchhhhCCccCCeeeCCCCC
Q 040254 448 TIFLANNSLSGRIPAETGQ------LKFLNVLDLGNNNFAG--SIPNQISQLTILERLDLSKNH 503 (555)
Q Consensus 448 ~l~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~ 503 (555)
.|++++|++++..+..|.. .+.++.|++++|.+.. ..|..+..+++++.++|++|+
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3555555555433333322 3667788888887753 456677778888888888874
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.8e-28 Score=235.04 Aligned_cols=257 Identities=22% Similarity=0.251 Sum_probs=206.0
Q ss_pred CceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcC
Q 040254 9 GQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSL 88 (555)
Q Consensus 9 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i 88 (555)
...|.|.+..+.|...+ + ..+|..+. ++|++|++++|.+. .+|..+|..+++|++|++++|++
T Consensus 2 P~~C~C~~~~l~c~~~~-------------l-~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l 64 (306)
T 2z66_A 2 PSRCSCSGTEIRCNSKG-------------L-TSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64 (306)
T ss_dssp CTTCEEETTEEECCSSC-------------C-SSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred cCCCeeCCCEEEcCCCC-------------c-ccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCcc
Confidence 45677877666665542 2 34454443 68999999999998 89988899999999999999998
Q ss_pred cccc--CCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeeccc
Q 040254 89 SGEL--TGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFNK 165 (555)
Q Consensus 89 ~~~~--~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n~ 165 (555)
+... +..+ . .+++|++|++++|.++. ++..+.++++|++|++++|.+....+ ..+..+++|++|++++|.
T Consensus 65 ~~~~~~~~~~---~---~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 65 SFKGCCSQSD---F---GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp CEEEEEEHHH---H---SCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred CcccCccccc---c---cccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 7431 1111 1 45689999999999884 77778899999999999888766544 568888999999999999
Q ss_pred CcccccccccCCCCCcEEEcccCcccc-CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCc
Q 040254 166 LSGFISNDIINLTSLLVLELYSKELIG-SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSA 244 (555)
Q Consensus 166 i~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 244 (555)
+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~ 216 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDT 216 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCS
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccCh
Confidence 988888888899999999999998876 57778888999999999999998777788888899999999999887 4554
Q ss_pred ccccCCCCCcEEEcccccccccccccccCCC-CCcEEEcccceeccc
Q 040254 245 YNFSVLSQLETIDLYINMFTGSFLLTLTSCR-LLTALRLACNQLEGQ 290 (555)
Q Consensus 245 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~ 290 (555)
..+..+++|+.|++++|.+++..+..+..++ +|++|++++|++.+.
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 5677888888888888888877777777774 888888888887754
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=237.66 Aligned_cols=287 Identities=19% Similarity=0.150 Sum_probs=181.6
Q ss_pred cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254 46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR 125 (555)
Q Consensus 46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 125 (555)
.-..|+.....+++++.++ .+|...+ ++|++|++++|++++..+..+. .+++|++|++++|.+++..+.+
T Consensus 26 ~~~~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~ 95 (353)
T 2z80_A 26 ASLSCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQ------RCVNLQALVLTSNGINTIEEDS 95 (353)
T ss_dssp -CCEECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTT------TCTTCCEEECTTSCCCEECTTT
T ss_pred cCCCCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhc------cCCCCCEEECCCCccCccCHhh
Confidence 3444566667788888777 6776433 4778888888877765554554 3447778888877777666667
Q ss_pred ccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCccccc-ccccCCCCCcEEEcccCc-cccCCCcCccCCCC
Q 040254 126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKE-LIGSIPRDIGKLTN 203 (555)
Q Consensus 126 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~ 203 (555)
|.++++|++|++++|.+....+..+.++++|++|++++|.++.+.. ..+..+++|++|++++|. +....+..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 7777777777777777665544456777777777777777776544 456667777777777663 44444455666666
Q ss_pred CCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcc
Q 040254 204 LKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLA 283 (555)
Q Consensus 204 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 283 (555)
|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~----------------------- 231 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRD----------------------- 231 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEES-----------------------
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCC-----------------------
Confidence 666666666666555555555666666666655543 23322233344444444444
Q ss_pred cceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCccccc----ccchhhhCC
Q 040254 284 CNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTG----QVPLWLSKL 359 (555)
Q Consensus 284 ~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~----~~~~~l~~l 359 (555)
|.+.+..+..+... ...+.++.++++++.+.+ .+|.++..+
T Consensus 232 -n~l~~~~~~~l~~~----------------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 232 -TDLDTFHFSELSTG----------------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp -CBCTTCCCC----------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred -Cccccccccccccc----------------------------------cccchhhccccccccccCcchhhhHHHHhcc
Confidence 44432221111110 112334445555544432 467888999
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccc
Q 040254 360 TKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFP 401 (555)
Q Consensus 360 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 401 (555)
++|++|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus 277 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999999999999995444446899999999999999986543
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-29 Score=269.36 Aligned_cols=408 Identities=14% Similarity=0.101 Sum_probs=288.2
Q ss_pred CCccccCCCCCCEEEccCCcCc---CcCc-----------hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCC-C
Q 040254 43 HLPSIGNLTHISHLNLSHNHVH---GPLP-----------INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC-S 107 (555)
Q Consensus 43 ~~~~~~~l~~L~~L~L~~n~~~---~~i~-----------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~-~ 107 (555)
.+..+..+++|++|+++++... +.+| ...+..+++|++|+|++|.+++..+..+... ++ +
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~-----~~~~ 139 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA-----RADD 139 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH-----HGGG
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHh-----cccc
Confidence 3445678899999999875321 1121 2344479999999999998876544333331 22 4
Q ss_pred ccEEEccCCcC-Cc-cCCccccCCCCCcEEEccCCCCCCC----CcHhhhcCCCCCeeEeecccCccc----ccccccCC
Q 040254 108 MRLLDFSYNDF-SS-QVPPRLGNCSRLKSFQAGYSNLLRS----LPDDIYAAASLEEPSLHFNKLSGF----ISNDIINL 177 (555)
Q Consensus 108 L~~L~ls~n~l-~~-~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l 177 (555)
|++|++++|.. .. .++....++++|++|++++|.+... ++.....+++|++|++++|.++++ .+..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 99999999862 21 1233345789999999999876554 444566789999999999998733 23445688
Q ss_pred CCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCc---ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCc
Q 040254 178 TSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS---GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLE 254 (555)
Q Consensus 178 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 254 (555)
++|++|++++|.+.+ ++..+..+++|++|+++..... ......+..+++|+.+.+.++... .++ ..+..+++|+
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~-~~~~~~~~L~ 296 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMP-ILFPFAAQIR 296 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGG-GGGGGGGGCC
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHH-HHHhhcCCCc
Confidence 999999999998865 5677888999999999864322 233456778889999999876433 344 4567789999
Q ss_pred EEEccccccccccc-ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEecc-----------ccCCCC
Q 040254 255 TIDLYINMFTGSFL-LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM-----------NFMNEA 322 (555)
Q Consensus 255 ~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~-----------n~~~~~ 322 (555)
+|++++|.+++... ..+..+++|++|+++ +.+.......+ ...|++|+.|+++. +.++..
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~-------~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL-------AQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH-------HHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH-------HHhCCCCCEEEeecCccccccccccCccCHH
Confidence 99999998765433 346789999999998 44332211111 24567899999993 444332
Q ss_pred CCccccccccCCCCCccEEEccCcccccccchhhhC-CCCCcEEEcc----CCccccc-----cCccccCCCCCcEEEcc
Q 040254 323 TPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSK-LTKLEVLLLS----GNQITGS-----IPGWFGNLPSLFYFALS 392 (555)
Q Consensus 323 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~ 392 (555)
... .+...+++|++|++..+.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|++|+++
T Consensus 369 ~~~----~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 369 GLI----ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp HHH----HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHH----HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 111 12245789999999888888766666665 8999999996 5677643 33346678999999998
Q ss_pred Ccc--Cccccchhhhc-cccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc-CChhccCCC
Q 040254 393 QNN--ISGEFPKELSR-LQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR-IPAETGQLK 468 (555)
Q Consensus 393 ~n~--l~~~~~~~~~~-l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~-~~~~~~~l~ 468 (555)
+|. +++..+..+.. ++.|. .|++++|++++. ++..+.+++
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~------------------------------------~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVR------------------------------------WMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCC------------------------------------EEEECSCCSSHHHHHHHHTCCT
T ss_pred cCCCCccHHHHHHHHHhCccce------------------------------------EeeccCCCCCHHHHHHHHhcCc
Confidence 654 55444433332 33343 588999998863 455568899
Q ss_pred CCCeeeCCCccceee-cchhhhCCccCCeeeCCCCCCCC
Q 040254 469 FLNVLDLGNNNFAGS-IPNQISQLTILERLDLSKNHLSE 506 (555)
Q Consensus 469 ~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~ 506 (555)
+|++|+|++|.+++. ++..+..+++|++|+|++|+++.
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 999999999998755 44455679999999999999983
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.3e-27 Score=224.22 Aligned_cols=208 Identities=23% Similarity=0.230 Sum_probs=160.1
Q ss_pred CCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCc-CCccCCccccC
Q 040254 50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYND-FSSQVPPRLGN 128 (555)
Q Consensus 50 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~ 128 (555)
.++|++|++++|.+. .++...|..+++|++|++++|.+++..+..+.. +++|++|++++|. ++...+..+..
T Consensus 31 ~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTG------LALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCC------ccCCCEEeCCCCCCccccCHHHhcC
Confidence 468889999999888 677777888888999999888888766666653 4488888888886 77655777888
Q ss_pred CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeee
Q 040254 129 CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL 208 (555)
Q Consensus 129 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 208 (555)
+++|++|++++|.+....+..+.++++|++|++++|.++.+.+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 88888888888887777677777888888888888888877666777888888888888877766555677778888888
Q ss_pred CccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254 209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 209 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
+++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+..
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCccC
Confidence 8888877666777777777888888877776 3444556677777777777776653
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.8e-26 Score=233.30 Aligned_cols=236 Identities=21% Similarity=0.196 Sum_probs=187.9
Q ss_pred cCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc
Q 040254 42 YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ 121 (555)
Q Consensus 42 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 121 (555)
.+|..+. +++++|+|++|.+. .++...|..+++|++|+|++|++++..+..|.. +++|++|++++|.++..
T Consensus 68 ~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 68 EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG------LASLNTLELFDNWLTVI 138 (452)
T ss_dssp SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSSCCSBC
T ss_pred ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccC------cccCCEEECCCCcCCcc
Confidence 3555553 58889999999888 676677888999999999999888777666654 44889999999988876
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec-ccCcccccccccCCCCCcEEEcccCccccCCCcCccC
Q 040254 122 VPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF-NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGK 200 (555)
Q Consensus 122 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 200 (555)
.+..|.++++|++|++++|.+....+..|.++++|++|++++ +.+..+.+..|.++++|++|++++|.+... | .+..
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~ 216 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP 216 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc
Confidence 666788888999999988887766666788888888888887 556666666788888888888888888643 3 4777
Q ss_pred CCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEE
Q 040254 201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280 (555)
Q Consensus 201 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 280 (555)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ +....|..+++|+.|++++|.+++.....+..+++|+.|
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 8888888888888887777888888888888888888873 444667888888888888888887777777888888888
Q ss_pred Ecccceecc
Q 040254 281 RLACNQLEG 289 (555)
Q Consensus 281 ~l~~n~~~~ 289 (555)
++++|++..
T Consensus 296 ~L~~Np~~C 304 (452)
T 3zyi_A 296 HLHHNPWNC 304 (452)
T ss_dssp ECCSSCEEC
T ss_pred EccCCCcCC
Confidence 888887763
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=230.45 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=172.3
Q ss_pred CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccC
Q 040254 6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSY 85 (555)
Q Consensus 6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 85 (555)
++....+.|.+... |. .++++++ .+|..+. ++|++|++++|.+. .++...|..+++|++|++++
T Consensus 22 ~~~~~~~~C~~~~~-c~-----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~ 85 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CK-----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTS 85 (353)
T ss_dssp -----CCEECTTSE-EE-----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTT
T ss_pred CCCccCCCCCCCeE-ee-----------CCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCC
Confidence 34445566776654 32 3445555 4555554 58999999999998 78887899999999999999
Q ss_pred CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeecc
Q 040254 86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFN 164 (555)
Q Consensus 86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n 164 (555)
|++++..+..+.. +++|++|++++|.+++..+..+.++++|++|++++|.+....+ ..+.++++|++|++++|
T Consensus 86 n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 86 NGINTIEEDSFSS------LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp SCCCEECTTTTTT------CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CccCccCHhhcCC------CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 9999877776654 4599999999999997555568999999999999988775433 37889999999999999
Q ss_pred -cCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254 165 -KLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240 (555)
Q Consensus 165 -~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 240 (555)
.++.+.+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+
T Consensus 160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred ccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 5787778889999999999999999998889999999999999999999974433345568999999999998873
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3e-26 Score=222.41 Aligned_cols=181 Identities=20% Similarity=0.211 Sum_probs=106.0
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCC--CcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEE
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRS--LPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLE 184 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 184 (555)
+|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|++++|.++.+ +..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEEE
Confidence 566666666666643334456666677777766655422 245566677777777777776653 34466777777777
Q ss_pred cccCccccCCC-cCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccc
Q 040254 185 LYSKELIGSIP-RDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMF 263 (555)
Q Consensus 185 L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 263 (555)
+++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+......+..+++|+.|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 77777665443 45666677777777777766555556666666666666666655322223444555555555555555
Q ss_pred cccccccccCCCCCcEEEcccceec
Q 040254 264 TGSFLLTLTSCRLLTALRLACNQLE 288 (555)
Q Consensus 264 ~~~~~~~l~~~~~L~~L~l~~n~~~ 288 (555)
++..+..+..+++|++|++++|++.
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCHHHhcCCCCCCEEECCCCccC
Confidence 4444444444444444444444443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8.3e-26 Score=230.69 Aligned_cols=235 Identities=24% Similarity=0.224 Sum_probs=170.4
Q ss_pred cCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc
Q 040254 42 YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ 121 (555)
Q Consensus 42 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 121 (555)
.+|..+. +++++|+|++|.+. .++...|.++++|++|+|++|+++...+..|. .+++|++|++++|.++..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~------~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN------GLANLNTLELFDNRLTTI 127 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGT------TCSSCCEEECCSSCCSSC
T ss_pred cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhcc------CCccCCEEECCCCcCCee
Confidence 4455443 57788888888877 56666777788888888888877766555544 344788888888887765
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec-ccCcccccccccCCCCCcEEEcccCccccCCCcCccC
Q 040254 122 VPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF-NKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGK 200 (555)
Q Consensus 122 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 200 (555)
.+..|..+++|++|++++|.+....+..|.++++|++|++++ +.+..+.+..|.++++|++|++++|.+. .+| .+..
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~ 205 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP 205 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCC
Confidence 555677788888888887777666566677778888888877 4455555566777888888888887776 334 3667
Q ss_pred CCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEE
Q 040254 201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280 (555)
Q Consensus 201 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 280 (555)
+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...|..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred CcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 778888888888777666777777788888888888777 3444567777788888888887777666677777778888
Q ss_pred Ecccceec
Q 040254 281 RLACNQLE 288 (555)
Q Consensus 281 ~l~~n~~~ 288 (555)
++++|.+.
T Consensus 285 ~L~~Np~~ 292 (440)
T 3zyj_A 285 HLHHNPWN 292 (440)
T ss_dssp ECCSSCEE
T ss_pred EcCCCCcc
Confidence 88777765
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5e-26 Score=218.38 Aligned_cols=226 Identities=19% Similarity=0.126 Sum_probs=177.3
Q ss_pred CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCc
Q 040254 54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLK 133 (555)
Q Consensus 54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 133 (555)
++++.+++.+. .+|... .++|++|++++|++++..+..+. .+++|++|++++|.+++..+.++.++++|+
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFR------ACRNLTILWLHSNVLARIDAAAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTT------TCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcc------cCCCCCEEECCCCccceeCHhhcCCccCCC
Confidence 67788888887 677542 46899999999998877666664 345899999999988877788888899999
Q ss_pred EEEccCCC-CCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccC
Q 040254 134 SFQAGYSN-LLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRN 212 (555)
Q Consensus 134 ~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n 212 (555)
+|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 99998886 55555777888888888888888888877777888888888888888887666666788888888888888
Q ss_pred cCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceeccc
Q 040254 213 NLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQ 290 (555)
Q Consensus 213 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 290 (555)
.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus 164 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 8876655667788888888888888774333 5677778888888888888776666677778888888888777643
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.9e-25 Score=226.69 Aligned_cols=229 Identities=21% Similarity=0.239 Sum_probs=205.8
Q ss_pred ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCC
Q 040254 26 GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSF 105 (555)
Q Consensus 26 ~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~ 105 (555)
+..+..+++++|.|++..+..|.++++|++|+|++|.+. .++...|..+++|++|+|++|+++...+..|.. +
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l 135 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY------L 135 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS------C
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhc------c
Confidence 346788899999999999999999999999999999998 788889999999999999999999776666654 5
Q ss_pred CCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc-HhhhcCCCCCeeEeecccCcccccccccCCCCCcEEE
Q 040254 106 CSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP-DDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLE 184 (555)
Q Consensus 106 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 184 (555)
++|++|++++|.++...+..|.++++|++|++++|+....++ ..|.++++|++|++++|.++.+. .+..+++|++|+
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~ 213 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELD 213 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEE
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEE
Confidence 599999999999998777789999999999999866655554 46889999999999999998753 588999999999
Q ss_pred cccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccc
Q 040254 185 LYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFT 264 (555)
Q Consensus 185 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 264 (555)
+++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCcc
Confidence 9999999888999999999999999999999888889999999999999999998 666678899999999999999875
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.5e-25 Score=227.93 Aligned_cols=250 Identities=20% Similarity=0.222 Sum_probs=215.1
Q ss_pred CCCCceEecccC--cceeeccC--------ceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcC
Q 040254 6 AAGGQIISCHTE--KSILRNHG--------GFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFL 75 (555)
Q Consensus 6 ~~~~~~~~c~~~--~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l 75 (555)
.++...|.|.+. .+.|...+ +..+..+++++|+|++..+..|.++++|++|+|++|.+. .++...|..+
T Consensus 44 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l 122 (452)
T 3zyi_A 44 QNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGL 122 (452)
T ss_dssp CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTC
T ss_pred CCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCc
Confidence 345555666542 22443332 346788999999999999999999999999999999998 6787889999
Q ss_pred CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcH-hhhcCC
Q 040254 76 TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPD-DIYAAA 154 (555)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~ 154 (555)
++|++|+|++|+++...+..+.. +++|++|++++|.++...+..|.++++|++|++++|+..+.++. .|.+++
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEY------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSS------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred ccCCEEECCCCcCCccChhhhcc------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 99999999999999777666654 55999999999999987777899999999999998666655554 688999
Q ss_pred CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM 234 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 234 (555)
+|++|++++|.++++ ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 197 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 999999999999975 358899999999999999998889999999999999999999998888899999999999999
Q ss_pred CccCccccCcccccCCCCCcEEEcccccccc
Q 040254 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
+|.+. .++...+..+++|+.|++++|.+..
T Consensus 275 ~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 275 HNNLS-SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SSCCS-CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCcCC-ccChHHhccccCCCEEEccCCCcCC
Confidence 99998 6666778899999999999998753
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.5e-25 Score=216.38 Aligned_cols=225 Identities=19% Similarity=0.229 Sum_probs=164.8
Q ss_pred CCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCC
Q 040254 50 LTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNC 129 (555)
Q Consensus 50 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 129 (555)
.+++++|+|++|.+. .+|..++. +++|++|++++|.++ ..|..+. .+++|++|++++|.++ .+|..+.++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~------~l~~L~~L~Ls~n~l~-~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQ------QFAGLETLTLARNPLR-ALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGG------GGTTCSEEEEESCCCC-CCCGGGGGC
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHh------ccCCCCEEECCCCccc-cCcHHHhcC
Confidence 467888888888887 78876554 888888888888887 5555554 3448888888888888 578788888
Q ss_pred CCCcEEEccCCCCCCCCcHhhhc---------CCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccC
Q 040254 130 SRLKSFQAGYSNLLRSLPDDIYA---------AASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGK 200 (555)
Q Consensus 130 ~~L~~L~L~~~~~~~~~~~~~~~---------l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 200 (555)
++|++|++++|+..+.+|..+.. +++|++|++++|.++. .|..+..+++|++|++++|.+.+ +|..+..
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~ 227 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHH 227 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCC-CCGGGGG
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCc-Cchhhcc
Confidence 88888888887777777776654 7777777777777773 45567777777777777777763 4555777
Q ss_pred CCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEE
Q 040254 201 LTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTAL 280 (555)
Q Consensus 201 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 280 (555)
+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..|..+..+++++.+
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 7777777777777776777777777777777777776665555 346667777777777777766677777777777777
Q ss_pred Eccccee
Q 040254 281 RLACNQL 287 (555)
Q Consensus 281 ~l~~n~~ 287 (555)
++..+.+
T Consensus 307 ~l~~~~~ 313 (328)
T 4fcg_A 307 LVPPHLQ 313 (328)
T ss_dssp ECCGGGS
T ss_pred eCCHHHH
Confidence 7665543
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=9.2e-26 Score=220.48 Aligned_cols=242 Identities=20% Similarity=0.197 Sum_probs=207.5
Q ss_pred eEecccCcceee-------ccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEc
Q 040254 11 IISCHTEKSILR-------NHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDL 83 (555)
Q Consensus 11 ~~~c~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 83 (555)
...|.|.+..|. ......++.++++++.++ .+|..+.++++|++|+|++|.+. .+|. .|..+++|++|++
T Consensus 58 ~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~L 134 (328)
T 4fcg_A 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLTL 134 (328)
T ss_dssp TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCS-CGGGGTTCSEEEE
T ss_pred ccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhH-HHhccCCCCEEEC
Confidence 344556555443 122345778899999998 77888999999999999999999 8886 4677999999999
Q ss_pred cCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccC---------CCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254 84 SYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGN---------CSRLKSFQAGYSNLLRSLPDDIYAAA 154 (555)
Q Consensus 84 s~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~---------l~~L~~L~L~~~~~~~~~~~~~~~l~ 154 (555)
++|+++ ..|..+. .+++|++|++++|++.+.+|..+.. +++|++|++++|.+. .+|..+.+++
T Consensus 135 s~n~l~-~lp~~l~------~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 206 (328)
T 4fcg_A 135 ARNPLR-ALPASIA------SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206 (328)
T ss_dssp ESCCCC-CCCGGGG------GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred CCCccc-cCcHHHh------cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence 999998 4454443 4569999999999888778877654 999999999998877 7888999999
Q ss_pred CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM 234 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 234 (555)
+|++|++++|.++++ +..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 207 ~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 999999999999974 4569999999999999999999999999999999999999999988999999999999999999
Q ss_pred CccCccccCcccccCCCCCcEEEcccccccc
Q 040254 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
+|.+.+.+| ..+..+++++.+.+..+.+..
T Consensus 286 ~n~~~~~iP-~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 286 GCVNLSRLP-SLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TCTTCCCCC-GGGGGSCTTCEEECCGGGSCC
T ss_pred CCCchhhcc-HHHhhccCceEEeCCHHHHHH
Confidence 999988888 678999999999998776543
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2.3e-27 Score=252.30 Aligned_cols=400 Identities=14% Similarity=0.059 Sum_probs=282.8
Q ss_pred CCCCCCEEEccCCcCcCcCchhHHhcCCC-CCEEEccCCc-CccccCCCCccccccCCCCCccEEEccCCcCCcc----C
Q 040254 49 NLTHISHLNLSHNHVHGPLPINSFHFLTL-LEIIDLSYNS-LSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ----V 122 (555)
Q Consensus 49 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~-L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~ 122 (555)
.+++|++|+|+++.+++..+..+...++. |++|++++|. ++. ..++... ..+++|++|++++|.+++. +
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT---DGLLSIV--THCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH---HHHHHHH--HHCTTCSEEECTTCEEECCCSHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH---HHHHHHH--hhCCCCCEEECccccccCcchhHH
Confidence 78999999999998875444333332455 9999999986 221 1122211 1467999999999988754 3
Q ss_pred CccccCCCCCcEEEccCCCCC----CCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccc---cCCC
Q 040254 123 PPRLGNCSRLKSFQAGYSNLL----RSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELI---GSIP 195 (555)
Q Consensus 123 ~~~~~~l~~L~~L~L~~~~~~----~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~ 195 (555)
+....++++|++|++++|.+. ..++..+.++++|++|+++++.+.+ .+..+..+++|++|+++..... ...+
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence 345678999999999988876 3445556788999999999999887 4577889999999999864322 2333
Q ss_pred cCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCC
Q 040254 196 RDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCR 275 (555)
Q Consensus 196 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~ 275 (555)
..+..+++|+.|+++++... .++..+..+++|++|++++|.+.+......+..+++|+.|+++++............++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence 45678899999999886544 56777888899999999999876433323467899999999994433323344446789
Q ss_pred CCcEEEccc-----------ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEcc
Q 040254 276 LLTALRLAC-----------NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLA 344 (555)
Q Consensus 276 ~L~~L~l~~-----------n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~ 344 (555)
+|++|+++. +.+++.....+ ...|++|+.|+++.+.+++..... +...+++|+.|+++
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-------~~~~~~L~~L~l~~~~l~~~~~~~----l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIAL-------AQGCQELEYMAVYVSDITNESLES----IGTYLKNLCDFRLV 411 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-------HHHCTTCSEEEEEESCCCHHHHHH----HHHHCCSCCEEEEE
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHH-------HhhCccCeEEEeecCCccHHHHHH----HHhhCCCCcEEEEe
Confidence 999999993 44442211111 345789999999888886643322 22347899999996
Q ss_pred ----Ccccccc-----cchhhhCCCCCcEEEccCCc--cccccCccc-cCCCCCcEEEccCccCccc-cchhhhccccch
Q 040254 345 ----GCQLTGQ-----VPLWLSKLTKLEVLLLSGNQ--ITGSIPGWF-GNLPSLFYFALSQNNISGE-FPKELSRLQPLV 411 (555)
Q Consensus 345 ----~n~i~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 411 (555)
.+.+++. ++..+..+++|++|++++|. +++..+..+ ..+++|++|++++|++++. ++..+..++.|.
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 491 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence 5667642 44457789999999998654 554444333 3489999999999999853 344445565555
Q ss_pred hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc-CChhccCCCCCCeeeCCCccceeecchhh-h
Q 040254 412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR-IPAETGQLKFLNVLDLGNNNFAGSIPNQI-S 489 (555)
Q Consensus 412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~ 489 (555)
.|++++|.++.. ++.....+++|++|+|++|++++.....+ .
T Consensus 492 ------------------------------------~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~ 535 (592)
T 3ogk_B 492 ------------------------------------KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535 (592)
T ss_dssp ------------------------------------EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred ------------------------------------eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH
Confidence 599999998754 34445678999999999999985533333 3
Q ss_pred CCccCCeeeCCCC
Q 040254 490 QLTILERLDLSKN 502 (555)
Q Consensus 490 ~l~~L~~L~Ls~N 502 (555)
.++.+....+..+
T Consensus 536 ~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 536 ARPYWNIELIPSR 548 (592)
T ss_dssp CCTTEEEEEECCC
T ss_pred hCCCcEEEEecCc
Confidence 5666666555544
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=8.6e-28 Score=255.67 Aligned_cols=403 Identities=18% Similarity=0.151 Sum_probs=247.7
Q ss_pred cccCCCCCCEEEccCCcCcCcCc--------------hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEE
Q 040254 46 SIGNLTHISHLNLSHNHVHGPLP--------------INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLL 111 (555)
Q Consensus 46 ~~~~l~~L~~L~L~~n~~~~~i~--------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L 111 (555)
.+..+++|++|+++++....++. ...+..+++|++|++++|.+++..+..+.. .+++|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~-----~~~~L~~L 135 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK-----SFKNFKVL 135 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH-----HCTTCCEE
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHH-----hCCCCcEE
Confidence 35667888888888875221111 233556888888888888877544333321 35588888
Q ss_pred EccCC-cCCcc-CCccccCCCCCcEEEccCCCCCCCCcHhhh----cCCCCCeeEeeccc--Cccc-ccccccCCCCCcE
Q 040254 112 DFSYN-DFSSQ-VPPRLGNCSRLKSFQAGYSNLLRSLPDDIY----AAASLEEPSLHFNK--LSGF-ISNDIINLTSLLV 182 (555)
Q Consensus 112 ~ls~n-~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~----~l~~L~~L~l~~n~--i~~~-~~~~~~~l~~L~~ 182 (555)
++++| .++.. ++..+.++++|++|++++|.+....+..+. .+++|++|+++++. +... ....+..+++|++
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~ 215 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCE
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcE
Confidence 88888 44432 344455788888888888775554443333 55688888888876 2211 1122345688888
Q ss_pred EEcccCccccCCCcCccCCCCCCeeeCccCc-------CcccCCccccCCCCCCEE-ECcCccCccccCcccccCCCCCc
Q 040254 183 LELYSKELIGSIPRDIGKLTNLKYLLLYRNN-------LSGSLPSSMMNCTNLKTL-NLMGNLFAGNLSAYNFSVLSQLE 254 (555)
Q Consensus 183 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~ 254 (555)
|++++|.....++..+..+++|++|++..+. +. .++..+..+++|+.+ .+..... ..++ ..+..+++|+
T Consensus 216 L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~-~~~~~~~~L~ 292 (594)
T 2p1m_B 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLP-AVYSVCSRLT 292 (594)
T ss_dssp EECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGG-GGHHHHTTCC
T ss_pred EecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHH-HHHHhhCCCC
Confidence 8888874333355566677888888865543 22 233356777888887 3333221 1222 2334567888
Q ss_pred EEEccccccccccc-ccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEecc---------ccCCCCCC
Q 040254 255 TIDLYINMFTGSFL-LTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTM---------NFMNEATP 324 (555)
Q Consensus 255 ~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~---------n~~~~~~~ 324 (555)
+|++++|.+++... ..+..+++|++|+++++ +.... +..+ ...+++|+.|++.+ +.++...
T Consensus 293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~---l~~l----~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~- 363 (594)
T 2p1m_B 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAG---LEVL----ASTCKDLRELRVFPSEPFVMEPNVALTEQG- 363 (594)
T ss_dssp EEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHH---HHHH----HHHCTTCCEEEEECSCTTCSSCSSCCCHHH-
T ss_pred EEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHH---HHHH----HHhCCCCCEEEEecCcccccccCCCCCHHH-
Confidence 88888887664332 23457788888888877 33111 1111 22366788888743 2222211
Q ss_pred ccccccccCCCCCccEEEccCcccccccchhhh-CCCCCcEEEcc--C----Cccccc-----cCccccCCCCCcEEEcc
Q 040254 325 NYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS-KLTKLEVLLLS--G----NQITGS-----IPGWFGNLPSLFYFALS 392 (555)
Q Consensus 325 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~L~ 392 (555)
...+...+++|+.|.+..+.+++.....+. .+++|++|+++ + +.+++. ++..+..+++|++|+++
T Consensus 364 ---l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 364 ---LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp ---HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred ---HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 111223467888888777777755554454 57888888888 3 445421 11225667888888887
Q ss_pred CccCccccchhhhc-cccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhc-cCCCCC
Q 040254 393 QNNISGEFPKELSR-LQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAET-GQLKFL 470 (555)
Q Consensus 393 ~n~l~~~~~~~~~~-l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~-~~l~~L 470 (555)
+ .+++..+..+.. ++.|. .|++++|.+++..+..+ .++++|
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~------------------------------------~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKME------------------------------------MLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCC------------------------------------EEEEESCCSSHHHHHHHHHHCTTC
T ss_pred C-cccHHHHHHHHHhchhcc------------------------------------EeeccCCCCcHHHHHHHHhcCCCc
Confidence 7 555444444333 33443 58888888765544444 667888
Q ss_pred CeeeCCCccceeecch-hhhCCccCCeeeCCCCCCC
Q 040254 471 NVLDLGNNNFAGSIPN-QISQLTILERLDLSKNHLS 505 (555)
Q Consensus 471 ~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~ 505 (555)
++|+|++|.+++.... .+..+++|++|++++|+++
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 8888888888654443 3445788888888888886
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.7e-23 Score=218.32 Aligned_cols=270 Identities=21% Similarity=0.188 Sum_probs=157.1
Q ss_pred CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR 131 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 131 (555)
++++|++++|.++ .+|..++ ++|++|++++|+|+.... .+++|++|++++|.+++ +|. .+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~~-lp~---~l~~ 102 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----------LPPELRTLEVSGNQLTS-LPV---LPPG 102 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----------CCTTCCEEEECSCCCSC-CCC---CCTT
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----------cCCCCCEEEcCCCcCCc-CCC---CCCC
Confidence 4566666666666 5665432 566666666666653221 12356666666666653 333 4555
Q ss_pred CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254 132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR 211 (555)
Q Consensus 132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 211 (555)
|++|++++|.+.. +|. .+++|++|++++|.++.+.. .+++|++|++++|.+.+ +|. .+++|+.|++++
T Consensus 103 L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 103 LLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN 170 (622)
T ss_dssp CCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence 6666666554433 222 34455555555555554321 12445555555554432 221 123444444444
Q ss_pred CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccC
Q 040254 212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQI 291 (555)
Q Consensus 212 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 291 (555)
|.++. ++ ..+++|+.|++++|.+++... ..++|+.|++++|.+. .+
T Consensus 171 N~l~~-------------------------l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l 216 (622)
T 3g06_A 171 NQLTS-------------------------LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SL 216 (622)
T ss_dssp SCCSC-------------------------CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SC
T ss_pred CCCCC-------------------------Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-cc
Confidence 44442 22 223445555555554443211 1245555555555554 22
Q ss_pred ChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCc
Q 040254 292 PPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQ 371 (555)
Q Consensus 292 ~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 371 (555)
|. ..++|+.|++++|.++..+ ..+++|+.|++++|+++ .+|. .+++|+.|++++|+
T Consensus 217 ~~-----------~~~~L~~L~Ls~N~L~~lp---------~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 217 PA-----------LPSGLKELIVSGNRLTSLP---------VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CC-----------CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC
T ss_pred CC-----------CCCCCCEEEccCCccCcCC---------CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCC
Confidence 21 1245666666666666543 33578899999999888 4554 66889999999999
Q ss_pred cccccCccccCCCCCcEEEccCccCccccchhhhccccc
Q 040254 372 ITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPL 410 (555)
Q Consensus 372 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 410 (555)
++ .+|..+..+++|+.|+|++|++++..|..+..++..
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred CC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 99 778889999999999999999998888877776643
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.7e-23 Score=219.88 Aligned_cols=269 Identities=23% Similarity=0.296 Sum_probs=148.0
Q ss_pred CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCC
Q 040254 76 TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAAS 155 (555)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 155 (555)
..+++|++++|.++ ..|..++ ++|++|++++|.++. +|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--------~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N--------------- 91 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--------AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGN--------------- 91 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--------TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSC---------------
T ss_pred CCCcEEEecCCCcC-ccChhhC--------CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCC---------------
Confidence 34666666666666 2233332 256666666666553 333 2344444444444
Q ss_pred CCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcC
Q 040254 156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235 (555)
Q Consensus 156 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 235 (555)
.++.+.. .+++|++|++++|.+.. +|. .+++|+.|++++|.++. +|.. +++|++|++++
T Consensus 92 ---------~l~~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 92 ---------QLTSLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSD 150 (622)
T ss_dssp ---------CCSCCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred ---------cCCcCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcC
Confidence 4433221 33445555555554432 222 34556666666666552 3332 25666666666
Q ss_pred ccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEec
Q 040254 236 NLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLT 315 (555)
Q Consensus 236 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~ 315 (555)
|.+. .++. .+.+|+.|++++|.++... ..+++|+.|++++|.+.
T Consensus 151 N~l~-~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~--------------------------- 194 (622)
T 3g06_A 151 NQLA-SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLA--------------------------- 194 (622)
T ss_dssp SCCS-CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS---------------------------
T ss_pred CcCC-CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCC---------------------------
Confidence 6655 2321 2356666666666665422 23455555555555544
Q ss_pred cccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCcc
Q 040254 316 MNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNN 395 (555)
Q Consensus 316 ~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 395 (555)
..+ ..+++|+.|++++|.++ .+|. .+++|++|++++|++++ +| ..+++|++|++++|+
T Consensus 195 -----~l~---------~~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 195 -----SLP---------TLPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR 252 (622)
T ss_dssp -----CCC---------CCCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred -----CCC---------CccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence 221 12345666666666665 3332 23567777777777763 44 345677777777777
Q ss_pred CccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeC
Q 040254 396 ISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDL 475 (555)
Q Consensus 396 l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~L 475 (555)
++ .+|. .+..|. .|++++|+++ .+|..+.++++|+.|+|
T Consensus 253 L~-~lp~---~~~~L~------------------------------------~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 253 LT-SLPM---LPSGLL------------------------------------SLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp CS-CCCC---CCTTCC------------------------------------EEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CC-cCCc---ccccCc------------------------------------EEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 76 3333 222222 4667777776 56667777777888888
Q ss_pred CCccceeecchhhhCCc
Q 040254 476 GNNNFAGSIPNQISQLT 492 (555)
Q Consensus 476 s~N~l~~~~~~~l~~l~ 492 (555)
++|.+++.+|..+..++
T Consensus 292 ~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 292 EGNPLSERTLQALREIT 308 (622)
T ss_dssp CSCCCCHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhcc
Confidence 88888777777666554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1e-25 Score=219.45 Aligned_cols=258 Identities=19% Similarity=0.114 Sum_probs=168.2
Q ss_pred eeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCcc
Q 040254 158 EPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL 237 (555)
Q Consensus 158 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 237 (555)
..+++.+.+.......+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34444444444333444455566666666666655555556666666666666666653322 5555666666666665
Q ss_pred CccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccc
Q 040254 238 FAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMN 317 (555)
Q Consensus 238 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n 317 (555)
+.+ ++ ..++|++|++++|.+++..+.. +++ |+.|++++|
T Consensus 92 l~~-l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~--------------------------------L~~L~l~~N 130 (317)
T 3o53_A 92 VQE-LL-----VGPSIETLHAANNNISRVSCSR---GQG--------------------------------KKNIYLANN 130 (317)
T ss_dssp EEE-EE-----ECTTCCEEECCSSCCSEEEECC---CSS--------------------------------CEEEECCSS
T ss_pred ccc-cc-----CCCCcCEEECCCCccCCcCccc---cCC--------------------------------CCEEECCCC
Confidence 541 11 2245555555555554332221 234 444444444
Q ss_pred cCCCCCCccccccccCCCCCccEEEccCcccccccchhh-hCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccC
Q 040254 318 FMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL-SKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNI 396 (555)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 396 (555)
.++...+..+ ..+++|++|++++|.+++..+..+ ..+++|++|++++|++++. + ....+++|++|++++|++
T Consensus 131 ~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 131 KITMLRDLDE-----GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp CCCSGGGBCT-----GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCC
T ss_pred CCCCccchhh-----hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcC
Confidence 4444333222 456788888888888886666665 4688999999999998855 3 233588999999999999
Q ss_pred ccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCC
Q 040254 397 SGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLG 476 (555)
Q Consensus 397 ~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls 476 (555)
++ +|..+..++.|. .|++++|+++ .+|..+..+++|++|+++
T Consensus 204 ~~-l~~~~~~l~~L~------------------------------------~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 204 AF-MGPEFQSAAGVT------------------------------------WISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CE-ECGGGGGGTTCS------------------------------------EEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred Cc-chhhhcccCccc------------------------------------EEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 84 444576766666 5899999988 567778889999999999
Q ss_pred Cccce-eecchhhhCCccCCeeeCCCCC
Q 040254 477 NNNFA-GSIPNQISQLTILERLDLSKNH 503 (555)
Q Consensus 477 ~N~l~-~~~~~~l~~l~~L~~L~Ls~N~ 503 (555)
+|.++ +.+|..+..+++|+.|++++|+
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCccCcCHHHHHhccccceEEECCCch
Confidence 99998 7788888999999999998654
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.9e-27 Score=251.60 Aligned_cols=400 Identities=15% Similarity=0.125 Sum_probs=267.5
Q ss_pred ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC-cCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN-SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR 125 (555)
Q Consensus 47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 125 (555)
...+++|++|+|+++.+++..+..+...+++|++|++++| .+++.. ++... ..+++|++|++++|.+++..+..
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~---l~~~~--~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG---LAAIA--ATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH---HHHHH--HHCTTCCEEECTTCEEECCCGGG
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH---HHHHH--HhCCCCCEEeCcCCccCCcchHH
Confidence 3468899999999998875555444446999999999998 444321 12211 14669999999999877543333
Q ss_pred ----ccCCCCCcEEEccCCC--CC-CCCcHhhhcCCCCCeeEeecc-cCcccccccccCCCCCcEEEcccCc-------c
Q 040254 126 ----LGNCSRLKSFQAGYSN--LL-RSLPDDIYAAASLEEPSLHFN-KLSGFISNDIINLTSLLVLELYSKE-------L 190 (555)
Q Consensus 126 ----~~~l~~L~~L~L~~~~--~~-~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-------~ 190 (555)
...+++|++|+++++. +. ..++..+..+++|++|++++| .+.+ .+..+..+++|++|++..+. +
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhH
Confidence 3477899999999876 11 112222345799999999988 4443 56677889999999976553 2
Q ss_pred ccCCCcCccCCCCCCee-eCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccc
Q 040254 191 IGSIPRDIGKLTNLKYL-LLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLL 269 (555)
Q Consensus 191 ~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 269 (555)
.+ ++..+..+++|+.+ .+...... .++..+..+++|++|++++|.+.+......+..+++|++|++++| +.+....
T Consensus 255 ~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 255 SG-LSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp HH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred HH-HHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 21 23356788899988 44433322 344445567899999999998664333334567899999999988 4433222
Q ss_pred -cccCCCCCcEEEccc---------ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCcc
Q 040254 270 -TLTSCRLLTALRLAC---------NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR 339 (555)
Q Consensus 270 -~l~~~~~L~~L~l~~---------n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~ 339 (555)
....+++|++|++.. +.+++.....+ ...+++|+.|.+..+.++...... +...+++|+
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l-------~~~~~~L~~L~~~~~~l~~~~~~~----l~~~~~~L~ 400 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-------SMGCPKLESVLYFCRQMTNAALIT----IARNRPNMT 400 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH-------HHHCTTCCEEEEEESCCCHHHHHH----HHHHCTTCC
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH-------HHhchhHHHHHHhcCCcCHHHHHH----HHhhCCCcc
Confidence 233589999999844 33332111111 124678999988888776543222 223578999
Q ss_pred EEEcc--C----ccccc-----ccchhhhCCCCCcEEEccCCccccccCccccC-CCCCcEEEccCccCccccchhh-hc
Q 040254 340 AVSLA--G----CQLTG-----QVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN-LPSLFYFALSQNNISGEFPKEL-SR 406 (555)
Q Consensus 340 ~L~l~--~----n~i~~-----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~ 406 (555)
.|+++ + +.++. .++..+..+++|++|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 479 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHH
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhc
Confidence 99998 3 45542 2233467889999999987 666554445544 8899999999999876544444 44
Q ss_pred cccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCCh-hccCCCCCCeeeCCCccceeecc
Q 040254 407 LQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA-ETGQLKFLNVLDLGNNNFAGSIP 485 (555)
Q Consensus 407 l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~ 485 (555)
++.|. .|++++|.++..... ....+++|++|++++|+++....
T Consensus 480 ~~~L~------------------------------------~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 523 (594)
T 2p1m_B 480 CDSLR------------------------------------KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGAC 523 (594)
T ss_dssp CTTCC------------------------------------EEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHH
T ss_pred CCCcC------------------------------------EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHH
Confidence 55554 588899988654433 34568999999999999965444
Q ss_pred hhh-hCCccCCeeeCCCCC
Q 040254 486 NQI-SQLTILERLDLSKNH 503 (555)
Q Consensus 486 ~~l-~~l~~L~~L~Ls~N~ 503 (555)
..+ ..++.|+...+..+.
T Consensus 524 ~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 524 KLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHCTTEEEEEECSSS
T ss_pred HHHHHhCCCCEEEEecCCC
Confidence 444 457777776666654
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=7.8e-26 Score=219.78 Aligned_cols=234 Identities=15% Similarity=0.135 Sum_probs=141.9
Q ss_pred cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccc-cCCCCc-cccccCCCCCccEEEccCCcCCccCC
Q 040254 46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGE-LTGLIP-SLAWNHSFCSMRLLDFSYNDFSSQVP 123 (555)
Q Consensus 46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~ 123 (555)
.+...++|++|++++|.+ .+|...+.. |++|++++|++... .+..+. .......+++|++|++++|.+++.+|
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 355667788888888888 577765553 88888888887532 211111 00000025578888888888876666
Q ss_pred ccc--cCCCCCcEEEccCCCCCCCCcHhhhcC-----CCCCeeEeecccCcccccccccCCCCCcEEEcccCccccC--C
Q 040254 124 PRL--GNCSRLKSFQAGYSNLLRSLPDDIYAA-----ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGS--I 194 (555)
Q Consensus 124 ~~~--~~l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--~ 194 (555)
..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|++++..+..|..+++|++|++++|.+.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 655 7788888888887777665 6666655 7777777777777776667777777777777777765443 1
Q ss_pred CcCc--cCCCCCCeeeCccCcCccc---CCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccc
Q 040254 195 PRDI--GKLTNLKYLLLYRNNLSGS---LPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLL 269 (555)
Q Consensus 195 ~~~l--~~l~~L~~L~L~~n~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 269 (555)
+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+.+..+...+..+++|+.|++++|.++. .+.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh
Confidence 2222 5666777777777766521 112234556666666666666543332334445556666666655552 222
Q ss_pred cccCCCCCcEEEcccceec
Q 040254 270 TLTSCRLLTALRLACNQLE 288 (555)
Q Consensus 270 ~l~~~~~L~~L~l~~n~~~ 288 (555)
.+. ++|++|++++|+++
T Consensus 271 ~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp SCC--SEEEEEECCSSCCC
T ss_pred hcc--CCceEEECCCCCCC
Confidence 222 45555555555544
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=8.6e-26 Score=219.46 Aligned_cols=60 Identities=32% Similarity=0.321 Sum_probs=43.2
Q ss_pred CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCcc
Q 040254 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISG 398 (555)
Q Consensus 334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 398 (555)
.+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 3466777777777776 5555554 6788888888888754 54 7778888888888888764
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=8e-25 Score=213.15 Aligned_cols=252 Identities=18% Similarity=0.157 Sum_probs=149.0
Q ss_pred ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254 108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS 187 (555)
Q Consensus 108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (555)
++..+++.+.+.......+..+++|++|++++|.+....+..+.++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555555543333444455666666666666666555666666666666666666655432 56666666666666
Q ss_pred CccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccc
Q 040254 188 KELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF 267 (555)
Q Consensus 188 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 267 (555)
|.+.+.. ..++|++|++++|.+.+..+. .+++|++|++++|.+. .++...+..+++|+.|++++|.+++..
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCccc
Confidence 6654221 225666666666665533222 2345556666555555 232234444555555555555555443
Q ss_pred ccccc-CCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254 268 LLTLT-SCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346 (555)
Q Consensus 268 ~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 346 (555)
+..+. .+++|++|++++|.+. ..... ..+++|++|++++|
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~--------------------------------~~~~~-------~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIY--------------------------------DVKGQ-------VVFAKLKTLDLSSN 201 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCC--------------------------------EEECC-------CCCTTCCEEECCSS
T ss_pred HHHHhhccCcCCEEECCCCcCc--------------------------------ccccc-------cccccCCEEECCCC
Confidence 33332 3455555555555443 32111 23677888888888
Q ss_pred ccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCc-cccchhhhccccch
Q 040254 347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNIS-GEFPKELSRLQPLV 411 (555)
Q Consensus 347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 411 (555)
++++ ++..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.++..+..+..|.
T Consensus 202 ~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 202 KLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred cCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 8874 4445778888888888888888 56677888888889999888887 55555555444433
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7e-23 Score=194.58 Aligned_cols=198 Identities=24% Similarity=0.253 Sum_probs=140.0
Q ss_pred ccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEE
Q 040254 32 QPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLL 111 (555)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L 111 (555)
++++++.++. +|..+. +++++|++++|.+. .++...|..+++|++|++++|+++...+..|. .+++|++|
T Consensus 21 l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~------~l~~L~~L 90 (270)
T 2o6q_A 21 VDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK------ELKNLETL 90 (270)
T ss_dssp EECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS------SCTTCCEE
T ss_pred EEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhc------CCCCCCEE
Confidence 4445566653 555443 57888888888887 67766777888888888888888765554443 34478888
Q ss_pred EccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccc
Q 040254 112 DFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELI 191 (555)
Q Consensus 112 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 191 (555)
++++|.+++..+..+.++++|++|++++|.+....+..|..+++|++|++++|.++.+.+..|..+++|++|++++|.+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 88888887655566777788888888877776666666777777777777777777766666777777777777777776
Q ss_pred cCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc
Q 040254 192 GSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA 239 (555)
Q Consensus 192 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 239 (555)
...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 665556677777777777777776554455666677777777777654
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=4e-23 Score=197.11 Aligned_cols=206 Identities=24% Similarity=0.209 Sum_probs=147.3
Q ss_pred CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC
Q 040254 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCS 130 (555)
Q Consensus 51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 130 (555)
++|++|++++|.+. .++...|..+++|++|++++|++++..+..+.. +++|++|++++|.+++..+..+.+++
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS------LSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTT------CTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccC------CcCCCEEECCCCccCccChhhhcCCc
Confidence 46778888888777 566666777788888888888777665555543 44788888888877766667777788
Q ss_pred CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccc-cccccCCCCCcEEEcccCccccCCCcCccCCCCCC----
Q 040254 131 RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFI-SNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK---- 205 (555)
Q Consensus 131 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~---- 205 (555)
+|++|++++|.+....+..+.++++|++|++++|.++... +..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 8888888777766655556777778888888888777643 66777788888888888877766555665555555
Q ss_pred eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254 206 YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 206 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
.|++++|.+.+..+..+ ...+|++|++++|.+. .++...+..+++|+.|++++|.+..
T Consensus 181 ~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred eeecCCCcccccCcccc-CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccc
Confidence 77888888775444433 3347888888888777 4555567778888888888887763
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=9.6e-23 Score=194.46 Aligned_cols=226 Identities=18% Similarity=0.125 Sum_probs=181.6
Q ss_pred EEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcE
Q 040254 55 HLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKS 134 (555)
Q Consensus 55 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 134 (555)
.++..+..+. .+|... .++|++|++++|++++..+..+. .+++|++|++++|.+++..+.++.++++|++
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFF------SFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTT------TCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhc------cccCCcEEECCCCcCCccCHHHccCCcCCCE
Confidence 4556666666 677643 25799999999999877665654 3558999999999998777778899999999
Q ss_pred EEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccC-CCcCccCCCCCCeeeCccCc
Q 040254 135 FQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGS-IPRDIGKLTNLKYLLLYRNN 213 (555)
Q Consensus 135 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~ 213 (555)
|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+... +|..+..+++|++|++++|.
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 99999988877778888999999999999999887777789999999999999998764 57888889999999999999
Q ss_pred CcccCCccccCCCCCC----EEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254 214 LSGSLPSSMMNCTNLK----TLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289 (555)
Q Consensus 214 l~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 289 (555)
+++..+..+..+++|+ +|++++|.+. .++...+.. .+|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 9876666666666666 8899999887 444344443 479999999999887777777888899999999998875
Q ss_pred cCC
Q 040254 290 QIP 292 (555)
Q Consensus 290 ~~~ 292 (555)
..+
T Consensus 239 ~c~ 241 (276)
T 2z62_A 239 SCP 241 (276)
T ss_dssp CTT
T ss_pred cCC
Confidence 543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-23 Score=216.19 Aligned_cols=128 Identities=20% Similarity=0.090 Sum_probs=75.6
Q ss_pred CCCCCccEEEccCcccccccchhhh-CCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254 333 DGFQNLRAVSLAGCQLTGQVPLWLS-KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV 411 (555)
Q Consensus 333 ~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 411 (555)
..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..+ ...+++|++|+|++|.+++.. ..+..+..|.
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~ 217 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVT 217 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCS
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhHcCCCCcc
Confidence 3345666666666666655555554 56667777777776664422 234666777777776666433 3354544444
Q ss_pred hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccce-eecchhhhC
Q 040254 412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFA-GSIPNQISQ 490 (555)
Q Consensus 412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~ 490 (555)
.|++++|.+++ +|..+..+++|+.|++++|.++ +.+|..+..
T Consensus 218 ------------------------------------~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 218 ------------------------------------WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp ------------------------------------EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred ------------------------------------EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 36666666663 4555666666666666666665 455555666
Q ss_pred CccCCeeeCC
Q 040254 491 LTILERLDLS 500 (555)
Q Consensus 491 l~~L~~L~Ls 500 (555)
++.|+.++++
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 6666666554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6e-22 Score=188.14 Aligned_cols=200 Identities=24% Similarity=0.218 Sum_probs=104.7
Q ss_pred CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR 131 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 131 (555)
..++++++++.+. .+|... .++|++|++++|+++...+..|.. +++|++|++++|.++...+..|.++++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHR------LTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSS------CTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcC------CCCCCEEECCCCccCeeChhhhcCCCC
Confidence 3566777777666 566432 245666666666666544444432 336666666666666444444555666
Q ss_pred CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254 132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR 211 (555)
Q Consensus 132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 211 (555)
|++|++++|.+....+..+..+++|++|++++|.++.+.+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 66666665555544444445555555555555555555444555555555555555555444333445555555555555
Q ss_pred CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccc
Q 040254 212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM 262 (555)
Q Consensus 212 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 262 (555)
|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCC
Confidence 5554333333444455555555555444 2332334444444444444443
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=6e-23 Score=211.40 Aligned_cols=230 Identities=22% Similarity=0.185 Sum_probs=144.9
Q ss_pred CCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECc
Q 040254 155 SLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLM 234 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 234 (555)
+|++|++++|.+++..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 45555555555555444555555555555555555543333 555555555555555555221 12556666666
Q ss_pred CccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEe
Q 040254 235 GNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFL 314 (555)
Q Consensus 235 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l 314 (555)
+|.+.+. + ...+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+. ..+++|+.|++
T Consensus 108 ~N~l~~~-~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------~~l~~L~~L~L 176 (487)
T 3oja_A 108 NNNISRV-S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-------ASSDTLEHLNL 176 (487)
T ss_dssp SSCCCCE-E---ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-------GGTTTCCEEEC
T ss_pred CCcCCCC-C---ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-------hhCCcccEEec
Confidence 6655522 2 12345666666666666665555566666666666666666654444332 12356667777
Q ss_pred ccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCc
Q 040254 315 TMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQN 394 (555)
Q Consensus 315 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 394 (555)
++|.+++.+.. ..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 177 s~N~l~~~~~~-------~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 177 QYNFIYDVKGQ-------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TTSCCCEEECC-------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred CCCcccccccc-------ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence 77766655322 347889999999999985 4445888999999999999999 46777888999999999999
Q ss_pred cCc-cccchhhhccccch
Q 040254 395 NIS-GEFPKELSRLQPLV 411 (555)
Q Consensus 395 ~l~-~~~~~~~~~l~~L~ 411 (555)
++. +.+|..+..+..+.
T Consensus 248 ~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CBCHHHHHHHHTTCHHHH
T ss_pred CCcCcchHHHHHhCCCCc
Confidence 998 55665555544443
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.3e-22 Score=189.23 Aligned_cols=223 Identities=16% Similarity=0.163 Sum_probs=167.6
Q ss_pred CCCCceEeccc-Ccce--eeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEE
Q 040254 6 AAGGQIISCHT-EKSI--LRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIID 82 (555)
Q Consensus 6 ~~~~~~~~c~~-~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 82 (555)
|++...|.|.. .... |.. -+.+|. +. +++++|++++|.+. .++...|..+++|++|+
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~----------------l~~ip~-~~--~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 61 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKD----------------IQRIPS-LP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIY 61 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECS----------------CSSCCC-CC--TTCCEEEEESCCCS-EECTTTTTTCTTCCEEE
T ss_pred CCCCCCCeeCCCCcceeEccC----------------ccccCC-CC--CcccEEEEeCCcce-EECHHHccCCCCCcEEe
Confidence 56677788876 4333 322 244555 43 38999999999998 78888899999999999
Q ss_pred ccCCc-CccccCCCCccccccCCCCCccEEEccC-CcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCC---
Q 040254 83 LSYNS-LSGELTGLIPSLAWNHSFCSMRLLDFSY-NDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLE--- 157 (555)
Q Consensus 83 Ls~n~-i~~~~~~~~~~~~~~~~~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~--- 157 (555)
+++|+ ++...+..|. .+++|++|++++ |.+++..+.+|.++++|++|++++|.+.+ +|. +..+++|+
T Consensus 62 l~~n~~l~~i~~~~f~------~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~ 133 (239)
T 2xwt_C 62 VSIDVTLQQLESHSFY------NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFF 133 (239)
T ss_dssp EECCSSCCEECTTTEE------SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEE
T ss_pred CCCCCCcceeCHhHcC------CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccccc
Confidence 99997 8876665664 455899999998 89987666788899999999999887665 565 77778887
Q ss_pred eeEeecc-cCcccccccccCCCCCc-EEEcccCccccCCCcCccCCCCCCeeeCccCc-CcccCCccccCC-CCCCEEEC
Q 040254 158 EPSLHFN-KLSGFISNDIINLTSLL-VLELYSKELIGSIPRDIGKLTNLKYLLLYRNN-LSGSLPSSMMNC-TNLKTLNL 233 (555)
Q Consensus 158 ~L~l~~n-~i~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~~-~~L~~L~l 233 (555)
+|++++| .++.+.+..|.++++|+ +|++++|.+....+..|.. ++|++|++++|. ++...+..+..+ ++|++|++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 8889888 88887777788888888 8888888887444444544 788888888884 775556667777 78888888
Q ss_pred cCccCccccCcccccCCCCCcEEEcccc
Q 040254 234 MGNLFAGNLSAYNFSVLSQLETIDLYIN 261 (555)
Q Consensus 234 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n 261 (555)
++|.+. .++.. .+++|+.|+++++
T Consensus 213 ~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 213 SQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred CCCccc-cCChh---HhccCceeeccCc
Confidence 888776 44422 4567777776654
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.4e-22 Score=190.02 Aligned_cols=181 Identities=20% Similarity=0.196 Sum_probs=103.4
Q ss_pred ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL 126 (555)
Q Consensus 47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 126 (555)
+..+++|+.|+++++.+. .++. +..+++|++|++++|.+++. +.+. .+++|++|++++|.+++..+..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~-----~~l~---~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI-----SALK---ELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC-----GGGT---TCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc-----hhhc---CCCCCCEEECCCCccCccChhHh
Confidence 445666677777766665 4442 55566666666666666532 1111 44466666666666665444555
Q ss_pred cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCe
Q 040254 127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKY 206 (555)
Q Consensus 127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 206 (555)
.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 66666666666666655544444555666666666666665555555555566666666666555444444555555555
Q ss_pred eeCccCcCcccCCccccCCCCCCEEECcCccC
Q 040254 207 LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLF 238 (555)
Q Consensus 207 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 238 (555)
|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 55555555544444455555555555555543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=187.17 Aligned_cols=201 Identities=21% Similarity=0.159 Sum_probs=96.8
Q ss_pred ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL 126 (555)
Q Consensus 47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 126 (555)
+.+++++++++++++.+. .+|..++ +.+++|++++|++++..+..+. .+++|++|++++|.+++. +. .
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~-~~-~ 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLM------PYTRLTQLNLDRAELTKL-QV-D 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGT------TCTTCCEEECTTSCCCEE-EC-C
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhh------cCCCCCEEECCCCccCcc-cC-C
Confidence 445555555555555555 4554322 4555555555555544333332 233555555555555532 21 1
Q ss_pred cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCe
Q 040254 127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKY 206 (555)
Q Consensus 127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 206 (555)
..+++|++|++++|.+. .+|..+..+++|++|++++|+++.+.+..|.++++|++|++++|.+....+..|..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 44555555555554433 34444445555555555555555544444555555555555555554444444445555555
Q ss_pred eeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccc
Q 040254 207 LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINM 262 (555)
Q Consensus 207 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 262 (555)
|++++|.++...+..+..+++|++|++++|.+. .++. .+.....|+.+++++|.
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~-~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCSEEECCSCC
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh-hhcccccCCeEEeCCCC
Confidence 555555554333333444455555555555444 3332 22223344444444443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=9.1e-22 Score=187.05 Aligned_cols=227 Identities=21% Similarity=0.162 Sum_probs=187.0
Q ss_pred CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR 131 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 131 (555)
++..+++..+.+.+.+. ...+++|++|++++|.++.. +.+. .+++|++|++++|.+++ + ..+..+++
T Consensus 20 ~l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~-----~~l~---~l~~L~~L~l~~n~l~~-~-~~l~~l~~ 86 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV-----QGIQ---YLPNVRYLALGGNKLHD-I-SALKELTN 86 (272)
T ss_dssp HHHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCCC-----TTGG---GCTTCCEEECTTSCCCC-C-GGGTTCTT
T ss_pred HHHHHHhcCcccccccc---cccccceeeeeeCCCCcccc-----cccc---cCCCCcEEECCCCCCCC-c-hhhcCCCC
Confidence 33445666666653222 55688999999999988743 2222 56699999999999985 3 47889999
Q ss_pred CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254 132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR 211 (555)
Q Consensus 132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 211 (555)
|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 99999999988877777788999999999999999988888889999999999999999877777788999999999999
Q ss_pred CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecccC
Q 040254 212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQI 291 (555)
Q Consensus 212 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 291 (555)
|.+++..+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|.+. +.++.++.++++.|.+.|.+
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGB
T ss_pred CCcCccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcc
Confidence 99997777778889999999999999984 55467888999999999999776 34678999999999999988
Q ss_pred Chhhhhcc
Q 040254 292 PPEIIKLK 299 (555)
Q Consensus 292 ~~~l~~l~ 299 (555)
|.++..+.
T Consensus 239 p~~~~~~~ 246 (272)
T 3rfs_A 239 RNSAGSVA 246 (272)
T ss_dssp BCTTSCBC
T ss_pred cCcccccC
Confidence 88776554
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.8e-21 Score=184.17 Aligned_cols=199 Identities=20% Similarity=0.192 Sum_probs=173.5
Q ss_pred eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254 28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS 107 (555)
Q Consensus 28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 107 (555)
....+++.+++++. +|..+. +++++|+|++|.+. .++...|..+++|++|++++|++++..+. ..+++
T Consensus 11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~l~~ 78 (290)
T 1p9a_G 11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--------GTLPV 78 (290)
T ss_dssp TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--------SCCTT
T ss_pred CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--------CCCCc
Confidence 34555677777764 555554 69999999999998 67777899999999999999999865432 25679
Q ss_pred ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254 108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS 187 (555)
Q Consensus 108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (555)
|++|++++|.++ .+|..+.++++|++|++++|++....+..|.++++|++|++++|+++.+.+..|..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999999 5888899999999999999998877778899999999999999999998888899999999999999
Q ss_pred CccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254 188 KELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240 (555)
Q Consensus 188 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 240 (555)
|++....+..|..+++|++|++++|.++ .+|..+....+|+.+++.+|++.+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9998777777889999999999999999 677788888999999999998864
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.4e-22 Score=201.03 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=62.1
Q ss_pred EEcccCccccCCCcCccCCCCCCeeeCccCcCcccCC----ccccCCC-CCCEEECcCccCccccCcccccCC-----CC
Q 040254 183 LELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLP----SSMMNCT-NLKTLNLMGNLFAGNLSAYNFSVL-----SQ 252 (555)
Q Consensus 183 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~l-----~~ 252 (555)
++++.|.+.+.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+ ..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCC
Confidence 4566666666666555555557777777777764443 4555666 67777777776653222 223222 56
Q ss_pred CcEEEccccccccccccc----ccCC-CCCcEEEcccceecccCCh
Q 040254 253 LETIDLYINMFTGSFLLT----LTSC-RLLTALRLACNQLEGQIPP 293 (555)
Q Consensus 253 L~~L~l~~n~~~~~~~~~----l~~~-~~L~~L~l~~n~~~~~~~~ 293 (555)
|++|++++|.+++..+.. +..+ ++|++|++++|++++..+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 127 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS 127 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH
Confidence 666666666665543332 2233 5666666666666544333
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.6e-22 Score=200.81 Aligned_cols=270 Identities=17% Similarity=0.154 Sum_probs=157.6
Q ss_pred EEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCc----HhhhcCC-CCCeeEeecccCcccccccccCC-----CC
Q 040254 110 LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLP----DDIYAAA-SLEEPSLHFNKLSGFISNDIINL-----TS 179 (555)
Q Consensus 110 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l-----~~ 179 (555)
++++++|.+++.+|..+....+|++|++++|.+....+ ..+.+++ +|++|++++|.++...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46778888887666666666668888888887766655 5666777 78888888888777655555554 77
Q ss_pred CcEEEcccCccccCCCcCc----cCC-CCCCeeeCccCcCcccCCccc----cC-CCCCCEEECcCccCccccCcccccC
Q 040254 180 LLVLELYSKELIGSIPRDI----GKL-TNLKYLLLYRNNLSGSLPSSM----MN-CTNLKTLNLMGNLFAGNLSAYNFSV 249 (555)
Q Consensus 180 L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-~~~L~~L~l~~n~l~~~~~~~~~~~ 249 (555)
|++|++++|.+.+..+..+ ..+ ++|++|++++|.++...+..+ .. .++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~--- 157 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-DE--- 157 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-HH---
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-HH---
Confidence 7777777777765544432 233 667777777776654333222 22 2456666666665542111 00
Q ss_pred CCCCcEEEcccccccccccccccCCC-CCcEEEcccceecccCChhhhhcccccccCC-CCCcEEEeccccCCCCCCccc
Q 040254 250 LSQLETIDLYINMFTGSFLLTLTSCR-LLTALRLACNQLEGQIPPEIIKLKSLILMGC-KNLNVLFLTMNFMNEATPNYD 327 (555)
Q Consensus 250 l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~-~~L~~L~l~~n~~~~~~~~~~ 327 (555)
....+...+ +|++|++++|++++..+..+... +..+ ++|+.|++++|.++.......
T Consensus 158 -----------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 158 -----------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKF----LASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp -----------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH----HHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred -----------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHH----HHhCCCCCCEEECCCCCCChhHHHHH
Confidence 111122222 44444444444443333332221 2222 245555555555544332222
Q ss_pred cccccCCCCCccEEEccCcccccccc----hhhhCCCCCcEEEccCCccccc-------cCccccCCCCCcEEEccCccC
Q 040254 328 QNKISDGFQNLRAVSLAGCQLTGQVP----LWLSKLTKLEVLLLSGNQITGS-------IPGWFGNLPSLFYFALSQNNI 396 (555)
Q Consensus 328 ~~~~~~~~~~L~~L~l~~n~i~~~~~----~~l~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l 396 (555)
...+....++|++|++++|.+++..+ ..+..+++|++|++++|.+.+. ++..+..+++|++|++++|++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 22222234577888888887765433 3446678888999988885432 234567788899999999998
Q ss_pred ccccchhh
Q 040254 397 SGEFPKEL 404 (555)
Q Consensus 397 ~~~~~~~~ 404 (555)
....+..+
T Consensus 297 ~~~~~~~~ 304 (362)
T 3goz_A 297 HPSHSIPI 304 (362)
T ss_dssp CGGGCHHH
T ss_pred CCcchHHH
Confidence 86644433
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.2e-21 Score=180.78 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=181.2
Q ss_pred CCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCc-CcCcCchhHHhcCCCCCEEEccC-
Q 040254 8 GGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNH-VHGPLPINSFHFLTLLEIIDLSY- 85 (555)
Q Consensus 8 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~- 85 (555)
.+..+.|...+.+.. .+..+..+++++|.|++..+..|..+++|++|++++|. ++ .++...|..+++|++|++++
T Consensus 14 ~~~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 14 EDFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp STTEEEECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEE
T ss_pred CcceeEccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCC
Confidence 455677877554444 44578899999999999999899999999999999997 87 78888899999999999999
Q ss_pred CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCc---EEEccCC-CCCCCCcHhhhcCCCCC-eeE
Q 040254 86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLK---SFQAGYS-NLLRSLPDDIYAAASLE-EPS 160 (555)
Q Consensus 86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~---~L~L~~~-~~~~~~~~~~~~l~~L~-~L~ 160 (555)
|+++...+..|.. +++|++|++++|.+++ +|. +..+++|+ +|++++| .+....+..|.++++|+ +|+
T Consensus 91 n~l~~i~~~~f~~------l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 91 RNLTYIDPDALKE------LPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp TTCCEECTTSEEC------CTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred CCeeEcCHHHhCC------CCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 9999776666654 5599999999999996 665 88889998 9999999 77666666789999999 999
Q ss_pred eecccCcccccccccCCCCCcEEEcccCc-cccCCCcCccCC-CCCCeeeCccCcCcccCCccccCCCCCCEEECcCc
Q 040254 161 LHFNKLSGFISNDIINLTSLLVLELYSKE-LIGSIPRDIGKL-TNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN 236 (555)
Q Consensus 161 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 236 (555)
+++|.++.+.+..+.. ++|++|++++|+ +....+..|..+ ++|+.|++++|.++. +|.. .+++|+.|++.++
T Consensus 163 l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 163 LYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 9999999776666666 899999999995 877767788999 999999999999984 4443 6789999999876
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.7e-22 Score=201.11 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=78.7
Q ss_pred CCccEEEccCcccc-cccc---hhhhCCCCCcEEEccCCcccc-----ccCccccCCCCCcEEEccCccCc----cccch
Q 040254 336 QNLRAVSLAGCQLT-GQVP---LWLSKLTKLEVLLLSGNQITG-----SIPGWFGNLPSLFYFALSQNNIS----GEFPK 402 (555)
Q Consensus 336 ~~L~~L~l~~n~i~-~~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~ 402 (555)
++|++|++++|+++ ...+ ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45555555555554 1222 344555666666666666552 12224555666666666666664 34444
Q ss_pred hhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc----CChhcc--CCCCCCeeeCC
Q 040254 403 ELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR----IPAETG--QLKFLNVLDLG 476 (555)
Q Consensus 403 ~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~----~~~~~~--~l~~L~~L~Ls 476 (555)
.+..++.|. .|++++|.+++. ++..+. .+++|++|+|+
T Consensus 239 ~l~~~~~L~------------------------------------~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 282 (386)
T 2ca6_A 239 ALKSWPNLR------------------------------------ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282 (386)
T ss_dssp HGGGCTTCC------------------------------------EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred HHccCCCcC------------------------------------EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECc
Confidence 444444444 366666666543 344443 37778888888
Q ss_pred Ccccee----ecchhh-hCCccCCeeeCCCCCCC
Q 040254 477 NNNFAG----SIPNQI-SQLTILERLDLSKNHLS 505 (555)
Q Consensus 477 ~N~l~~----~~~~~l-~~l~~L~~L~Ls~N~l~ 505 (555)
+|.+++ .+|..+ ..+++|++|++++|+++
T Consensus 283 ~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp SSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 888876 366666 55778888888888876
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.2e-20 Score=174.21 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=58.2
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
+|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++++|.++++.+..|..+++|++|+++
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 33333333333333333333344444444444443333333333444444444444444444333344444444444444
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA 239 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 239 (555)
+|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 44444333334444455555555555554333334444455555555555443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=185.70 Aligned_cols=202 Identities=15% Similarity=0.079 Sum_probs=86.0
Q ss_pred CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCC----ccccCCCCCcEEEccCCCCCCCCcHhh
Q 040254 75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVP----PRLGNCSRLKSFQAGYSNLLRSLPDDI 150 (555)
Q Consensus 75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~~ 150 (555)
+++|++|++++|++++..+..+.. ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+....+..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLE----ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSS----CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred cCceeEEEeeCCEeccchhhhhhh----ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 344555555555555444433310 023355555555555553222 122344555555555555444444444
Q ss_pred hcCCCCCeeEeecccCccc---c-cccccCCCCCcEEEcccCccccCCCc----CccCCCCCCeeeCccCcCcccCCccc
Q 040254 151 YAAASLEEPSLHFNKLSGF---I-SNDIINLTSLLVLELYSKELIGSIPR----DIGKLTNLKYLLLYRNNLSGSLPSSM 222 (555)
Q Consensus 151 ~~l~~L~~L~l~~n~i~~~---~-~~~~~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l 222 (555)
..+++|++|++++|++.+. . +..+..+++|++|++++|.++. ++. .+..+++|++|++++|.+.+..|..+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 4455555555555544321 1 1112344445555555544431 111 12334445555555554443333333
Q ss_pred cCC---CCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEccccee
Q 040254 223 MNC---TNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQL 287 (555)
Q Consensus 223 ~~~---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 287 (555)
..+ ++|++|++++|.+. .++.. + .++|+.|++++|.+++.. .+..+++|+.|++++|++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~-~--~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKG-L--PAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSC-C--CSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSSTTT
T ss_pred HhccCcCcCCEEECCCCCCC-chhhh-h--cCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCCCC
Confidence 333 34444444444444 33321 1 134444444444444321 123334444444444433
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=6e-21 Score=185.12 Aligned_cols=204 Identities=21% Similarity=0.152 Sum_probs=100.9
Q ss_pred CCCeeEeecccCcccccccc--cCCCCCcEEEcccCccccCCC----cCccCCCCCCeeeCccCcCcccCCccccCCCCC
Q 040254 155 SLEEPSLHFNKLSGFISNDI--INLTSLLVLELYSKELIGSIP----RDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNL 228 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 228 (555)
+|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444333333 444444444444444433222 112234455555555555544444444445555
Q ss_pred CEEECcCccCccc--c-CcccccCCCCCcEEEccccccccccc--c-cccCCCCCcEEEcccceecccCChhhhhccccc
Q 040254 229 KTLNLMGNLFAGN--L-SAYNFSVLSQLETIDLYINMFTGSFL--L-TLTSCRLLTALRLACNQLEGQIPPEIIKLKSLI 302 (555)
Q Consensus 229 ~~L~l~~n~l~~~--~-~~~~~~~l~~L~~L~l~~n~~~~~~~--~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~ 302 (555)
++|++++|.+.+. + ....+..+++|++|++++|.++.... . .+..+++|++|++++|++.+..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~---- 247 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC---- 247 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC----
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc----
Confidence 5555555543321 1 11112344445555555554432111 0 12344555555555555554333322211
Q ss_pred ccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccC
Q 040254 303 LMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGN 382 (555)
Q Consensus 303 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 382 (555)
..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..
T Consensus 248 ------------------------------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~ 292 (310)
T 4glp_A 248 ------------------------------MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE 292 (310)
T ss_dssp ------------------------------CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred ------------------------------cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence 22356777777777776 4555443 6788888888887743 32 566
Q ss_pred CCCCcEEEccCccCc
Q 040254 383 LPSLFYFALSQNNIS 397 (555)
Q Consensus 383 l~~L~~L~L~~n~l~ 397 (555)
+++|++|++++|+++
T Consensus 293 l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 293 LPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCSCEECSSTTTS
T ss_pred CCCccEEECcCCCCC
Confidence 778888888888776
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.2e-21 Score=190.73 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=152.4
Q ss_pred CCCEEEccCCcCcCcCchhHHhcC--CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc-CCccccC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFL--TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ-VPPRLGN 128 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~ 128 (555)
.++.++++++.+. +..+..+ +.+++|++++|.+.+..+..+ .+++|++|++++|.+++. ++..+..
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-------~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-------SPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCC-------CCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhc-------cCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 3678888887665 2445556 888888888888876554422 455888888888887754 6667788
Q ss_pred CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc-cCccc-ccccccCCCCCcEEEcccC-ccccC-CCcCccCCC-C
Q 040254 129 CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN-KLSGF-ISNDIINLTSLLVLELYSK-ELIGS-IPRDIGKLT-N 203 (555)
Q Consensus 129 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~l~-~ 203 (555)
+++|++|++++|.+....+..+.++++|++|++++| .+++. .+..+..+++|++|++++| .+.+. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 888888888888777677777888888888888888 56642 3445677888888888888 66543 344566677 7
Q ss_pred CCeeeCccCc--Cc-ccCCccccCCCCCCEEECcCcc-CccccCcccccCCCCCcEEEccccc-ccccccccccCCCCCc
Q 040254 204 LKYLLLYRNN--LS-GSLPSSMMNCTNLKTLNLMGNL-FAGNLSAYNFSVLSQLETIDLYINM-FTGSFLLTLTSCRLLT 278 (555)
Q Consensus 204 L~~L~L~~n~--l~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~ 278 (555)
|++|++++|. ++ ..++..+..+++|++|++++|. +++..+ ..+..+++|++|++++|. +.......+..+++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 8888888773 43 2344555667777777777776 443333 355666777777777773 3333333456677777
Q ss_pred EEEcccc
Q 040254 279 ALRLACN 285 (555)
Q Consensus 279 ~L~l~~n 285 (555)
+|++++|
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 7777766
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.1e-19 Score=170.40 Aligned_cols=179 Identities=24% Similarity=0.234 Sum_probs=116.8
Q ss_pred CCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCC
Q 040254 76 TLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAAS 155 (555)
Q Consensus 76 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 155 (555)
...++++++++.++. .|..++. ++++|++++|.+++..+..+.++++|++|++++|.+....+..+.++++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~~--------~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIPA--------DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCCT--------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCeEEecCCCCccc-cCCCCCC--------CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence 345667777777663 2333332 6777777777777666666777777888887777777666666777777
Q ss_pred CCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcC
Q 040254 156 LEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMG 235 (555)
Q Consensus 156 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 235 (555)
|++|++++|.++.+.+..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 77777777777766666667777777777777777655555566667777777777766644444566666666666666
Q ss_pred ccCccccCcccccCCCCCcEEEccccccc
Q 040254 236 NLFAGNLSAYNFSVLSQLETIDLYINMFT 264 (555)
Q Consensus 236 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 264 (555)
|.+. .++...+..+++|+.|++++|.+.
T Consensus 165 N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 165 NQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence 6665 333344555555555555555554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7.3e-20 Score=177.04 Aligned_cols=207 Identities=18% Similarity=0.226 Sum_probs=129.3
Q ss_pred cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254 33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD 112 (555)
Q Consensus 33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ 112 (555)
.+..+.+.+.. .+.++++|++|+++++.+. .++. +..+++|++|++++|++++..+ +. .+++|++|+
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~------~l~~L~~L~ 91 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LK------NLTKITELE 91 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCCSCCEEE
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--Hc------cCCCCCEEE
Confidence 34444444433 2445777888888888777 5652 6667888888888887775432 22 455788888
Q ss_pred ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254 113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG 192 (555)
Q Consensus 113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~ 192 (555)
+++|.+++ + ..+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+..
T Consensus 92 L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 92 LSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 88877774 3 3577777777777777765543 3 36677777777777777765433 6666777777777776654
Q ss_pred CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
..+ +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+++
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeeec
Confidence 322 56666666666666666532 22 5556666666666666552 22 24555556666665555543
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=6.7e-22 Score=198.25 Aligned_cols=65 Identities=31% Similarity=0.409 Sum_probs=36.7
Q ss_pred CCccEEEccCcccccc----cchhhhC--CCCCcEEEccCCcccc----ccCccc-cCCCCCcEEEccCccCcccc
Q 040254 336 QNLRAVSLAGCQLTGQ----VPLWLSK--LTKLEVLLLSGNQITG----SIPGWF-GNLPSLFYFALSQNNISGEF 400 (555)
Q Consensus 336 ~~L~~L~l~~n~i~~~----~~~~l~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~ 400 (555)
++|++|++++|.+++. ++.++.. +++|++|++++|.+++ .++..+ .++++|++|++++|++++..
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3444555555544432 3344422 6667777777777665 245444 44677777777777776444
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.2e-20 Score=167.50 Aligned_cols=189 Identities=21% Similarity=0.191 Sum_probs=151.5
Q ss_pred CceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcC
Q 040254 9 GQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSL 88 (555)
Q Consensus 9 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i 88 (555)
++.|.|.+..+.|...+ + ..+|..+ .++|++|++++|.+. .++...|..+++|++|++++|++
T Consensus 2 p~~C~C~~~~v~c~~~~-------------l-~~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 64 (208)
T 2o6s_A 2 PSRCSCSGTTVECYSQG-------------R-TSVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKL 64 (208)
T ss_dssp CTTCEEETTEEECCSSC-------------C-SSCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred cCCCEECCCEEEecCCC-------------c-cCCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCcc
Confidence 56788888777776643 2 2344443 468999999999998 78888898999999999999999
Q ss_pred ccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcc
Q 040254 89 SGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSG 168 (555)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 168 (555)
++..+..+. .+++|++|++++|.+++..+..+.++++|++|++++|.+....+..+.++++|++|++++|.+++
T Consensus 65 ~~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 65 QSLPNGVFN------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCCCTTTTT------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CccChhhcC------CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 876655554 34599999999999997666678899999999999988877666668888999999999999988
Q ss_pred cccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCC
Q 040254 169 FISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTN 227 (555)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~ 227 (555)
+.+..+..+++|++|++++|.+. ..+++|++|+++.|.+++.+|..++.++.
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred eCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 77777888999999999888664 34567888888888888888877766543
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1e-19 Score=179.52 Aligned_cols=246 Identities=14% Similarity=0.106 Sum_probs=181.5
Q ss_pred eEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCcc
Q 040254 11 IISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSG 90 (555)
Q Consensus 11 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~ 90 (555)
+|.|.+.++.|... +++ .+|..+ .+++++|+|++|+++ .+|..+|.++++|++|+|++|++.+
T Consensus 6 ~C~C~~~~v~C~~~-------------~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~ 68 (350)
T 4ay9_X 6 ICHCSNRVFLCQES-------------KVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE 68 (350)
T ss_dssp SSEEETTEEEEEST-------------TCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCC
T ss_pred ccEeeCCEEEecCC-------------CCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCC
Confidence 48888777676654 333 566666 368999999999998 8999999999999999999999865
Q ss_pred ccC-CCCccccccCCCCCcc-EEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeec-ccCc
Q 040254 91 ELT-GLIPSLAWNHSFCSMR-LLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHF-NKLS 167 (555)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~i~ 167 (555)
..+ +.|.. +++++ .+.+++|+++...+.+|.++++|++|++++|.+....+..+....++..+++.+ +.+.
T Consensus 69 ~i~~~~f~~------L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 69 VIEADVFSN------LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp EECTTSBCS------CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred ccChhHhhc------chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence 433 44543 33555 567778899987788899999999999999888766666666677788888865 5777
Q ss_pred ccccccccCCC-CCcEEEcccCccccCCCcCccCCCCCCeeeCcc-CcCcccCCccccCCCCCCEEECcCccCccccCcc
Q 040254 168 GFISNDIINLT-SLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR-NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAY 245 (555)
Q Consensus 168 ~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 245 (555)
.+.+..|..+. .++.|++++|.+....+..| ...+|+.+++.+ |.++...+..|..+++|++|++++|.++ .++..
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~ 220 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY 220 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred cccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh
Confidence 77777777765 68899999999875544444 457899999975 5666444456788999999999999887 66644
Q ss_pred cccCCCCCcEEEcccccccccccccccCCCCCcEEEcccc
Q 040254 246 NFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285 (555)
Q Consensus 246 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 285 (555)
. +.+|++|.+.++.--...+ .+..+++|+.+++.++
T Consensus 221 ~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 221 G---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp S---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred h---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 3 4566666655443222233 4677888888888654
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.8e-19 Score=174.35 Aligned_cols=208 Identities=18% Similarity=0.238 Sum_probs=153.5
Q ss_pred EEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEE
Q 040254 56 LNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSF 135 (555)
Q Consensus 56 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 135 (555)
+.+..+.+.+.+. +..+++|++|++++|.++.. +.+. .+++|++|++++|.+++ ++. +..+++|++|
T Consensus 24 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l-----~~~~---~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L 90 (308)
T 1h6u_A 24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTI-----EGVQ---YLNNLIGLELKDNQITD-LAP-LKNLTKITEL 90 (308)
T ss_dssp HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCC-----TTGG---GCTTCCEEECCSSCCCC-CGG-GTTCCSCCEE
T ss_pred HHhCCCCcCceec---HHHcCCcCEEEeeCCCccCc-----hhhh---ccCCCCEEEccCCcCCC-Chh-HccCCCCCEE
Confidence 3445555552222 44577899999999888743 2222 46689999999998885 444 8888899999
Q ss_pred EccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCc
Q 040254 136 QAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS 215 (555)
Q Consensus 136 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 215 (555)
++++|.+.. ++ .+..+++|++|++++|.++++. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 91 ~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 91 ELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 999887655 33 6888888889999888888753 37888888888888888865433 777888888888888887
Q ss_pred ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccceecc
Q 040254 216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEG 289 (555)
Q Consensus 216 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 289 (555)
+. +. +..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+.. .+..+++|+.|++++|++.+
T Consensus 165 ~~-~~-l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DL-TP-LANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-GG-GTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CC-hh-hcCCCCCCEEECCCCccC-cCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 43 33 778888888888888877 343 2677788888888888887654 36778888888888887763
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=1.5e-20 Score=184.88 Aligned_cols=205 Identities=18% Similarity=0.153 Sum_probs=105.8
Q ss_pred CCCCeeEeecccCcccccccccCCCCCcEEEcccCccccC-CCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEE
Q 040254 154 ASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGS-IPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLN 232 (555)
Q Consensus 154 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 232 (555)
+.++.|++++|.+.+..+. +..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4555555555555443322 33455555555555554432 344445555555555555555544444455555566666
Q ss_pred CcCc-cCccccCcccccCCCCCcEEEcccc-ccccc-ccccccCCC-CCcEEEcccce--ec-ccCChhhhhcccccccC
Q 040254 233 LMGN-LFAGNLSAYNFSVLSQLETIDLYIN-MFTGS-FLLTLTSCR-LLTALRLACNQ--LE-GQIPPEIIKLKSLILMG 305 (555)
Q Consensus 233 l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L~~L~l~~n~--~~-~~~~~~l~~l~~l~~~~ 305 (555)
+++| .+.+......+..+++|++|++++| .+++. .+..+..++ +|++|++++|. ++ +.++..+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~---------- 218 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV---------- 218 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH----------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH----------
Confidence 6555 3332111123444555666666555 55432 233344555 66666666653 22 0111111
Q ss_pred CCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcc-cccccchhhhCCCCCcEEEccCCc-cccccCccccCC
Q 040254 306 CKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQ-LTGQVPLWLSKLTKLEVLLLSGNQ-ITGSIPGWFGNL 383 (555)
Q Consensus 306 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l 383 (555)
..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+
T Consensus 219 ---------------------------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 219 ---------------------------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp ---------------------------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred ---------------------------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 234566666666666 444555566667777777777773 322222245667
Q ss_pred CCCcEEEccCccCc
Q 040254 384 PSLFYFALSQNNIS 397 (555)
Q Consensus 384 ~~L~~L~L~~n~l~ 397 (555)
++|++|++++| ++
T Consensus 272 ~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 272 PTLKTLQVFGI-VP 284 (336)
T ss_dssp TTCCEEECTTS-SC
T ss_pred CCCCEEeccCc-cC
Confidence 77777777777 44
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=6.8e-19 Score=173.62 Aligned_cols=201 Identities=16% Similarity=0.140 Sum_probs=106.9
Q ss_pred CEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccC-CccccCCCCC
Q 040254 54 SHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQV-PPRLGNCSRL 132 (555)
Q Consensus 54 ~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L 132 (555)
++++.+++.++ .||..+ .+++++|+|++|+|+...++.|.. +++|++|+|++|++.+.+ +.+|.+++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~------l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSG------FGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTT------CTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcC------CCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 45666777776 676543 245677777777776555445543 336677777766664423 3455666665
Q ss_pred cE-EEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc-CccccCCCcCccCCC-CCCeeeC
Q 040254 133 KS-FQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS-KELIGSIPRDIGKLT-NLKYLLL 209 (555)
Q Consensus 133 ~~-L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~L 209 (555)
++ +.+..|++....|..|..+++|++|++++|.++...+..+....++..|++.+ +.+....+..|..+. .++.|++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 54 33344555544455566666666666666666655555555555566666644 233333333344332 4555666
Q ss_pred ccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254 210 YRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 210 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
++|.++. ++.......+|+++++.++...+.++...|..+++|+.|++++|.++.
T Consensus 162 ~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 162 NKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp CSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 6665552 232333334555555543222224444445555555555555555543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.1e-18 Score=156.84 Aligned_cols=131 Identities=24% Similarity=0.194 Sum_probs=61.0
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
+|++|++++|.+++..+..+.++++|++|++++|.+....+..|..+++|++|++++|.++++.+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444443333334444444444444444433333333444444455554444444444444455555555555
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCcc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNL 237 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 237 (555)
+|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 555544433344455555555555555543333334445555555555553
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.5e-18 Score=158.94 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=108.2
Q ss_pred cCCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEcc
Q 040254 5 PAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS 84 (555)
Q Consensus 5 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 84 (555)
.++++..|.|.+..+.|... +++ .+|..+. +++++|++++|.+. .++...|..+++|++|+|+
T Consensus 2 ~~~CP~~C~C~~~~v~c~~~-------------~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls 64 (220)
T 2v9t_B 2 SLHCPAACTCSNNIVDCRGK-------------GLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS 64 (220)
T ss_dssp CCCSCTTSEEETTEEECTTS-------------CCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECC
T ss_pred CCCCCCCCEECCCEEEcCCC-------------CcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECC
Confidence 45677788887655554443 333 3454443 57888888888887 6777777778888888888
Q ss_pred CCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc
Q 040254 85 YNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164 (555)
Q Consensus 85 ~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n 164 (555)
+|++++..+..|.. +++|++|++++|.++...+..|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 65 ~N~i~~~~~~~~~~------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 65 NNQISELAPDAFQG------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp SSCCCEECTTTTTT------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCCcCHHHhhC------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 88887666666653 337777777777777544455666777777777766666655666666666666666666
Q ss_pred cCcccccccccCCCCCcEEEcccCccc
Q 040254 165 KLSGFISNDIINLTSLLVLELYSKELI 191 (555)
Q Consensus 165 ~i~~~~~~~~~~l~~L~~L~L~~n~~~ 191 (555)
.++++.+..|..+++|++|++++|++.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 139 KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666655555555666666666555543
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6.2e-19 Score=174.61 Aligned_cols=178 Identities=25% Similarity=0.239 Sum_probs=121.8
Q ss_pred cEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhh-CCCCCcEEEccCCccccccCccccCCCCCcE
Q 040254 310 NVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS-KLTKLEVLLLSGNQITGSIPGWFGNLPSLFY 388 (555)
Q Consensus 310 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 388 (555)
+.++++++.++..+.. .++.++.|++++|++++..+.++. .+++|++|+|++|++.+..+..|..+++|++
T Consensus 21 ~~l~c~~~~l~~iP~~--------~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS--------LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSCCSS--------CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCccCcc--------CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 3555666665554432 234577788888877766666666 7788888888888887666677778888888
Q ss_pred EEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCC
Q 040254 389 FALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLK 468 (555)
Q Consensus 389 L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~ 468 (555)
|+|++|++++..+..+..+..|. .|+|++|++++..+..|.+++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~------------------------------------~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALE------------------------------------VLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCC------------------------------------EEECCSSCCCEECTTTTTTCT
T ss_pred EECCCCcCCcCCHHHhCCCcCCC------------------------------------EEECCCCcccEECHHHhCCcc
Confidence 88888888766555666666665 478888888877777788888
Q ss_pred CCCeeeCCCccceeecchhh---hCCccCCeeeCCCCCCCCCcceecCCCC--CCCCC--CCCCccCCCcCCCCcc
Q 040254 469 FLNVLDLGNNNFAGSIPNQI---SQLTILERLDLSKNHLSENNLQGPIPSG--GQLHT--FPPSSFEGNPEFCSDI 537 (555)
Q Consensus 469 ~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~Ls~N~l~~~~l~~~ip~~--~~~~~--l~~~~~~gNp~~c~~~ 537 (555)
+|++|+|++|+|++..+..+ ..+++|+.|||++|+|+ .+|.. ..+.. +..+.+.||||.|++.
T Consensus 137 ~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~------~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK------KLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC------CCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC------ccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 88888888888885444444 56788888888888886 23311 11222 2556788888888764
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=156.78 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=90.1
Q ss_pred cCCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEcc
Q 040254 5 PAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS 84 (555)
Q Consensus 5 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 84 (555)
+.+++.+|.|.+.... ++++.++. +|..+. +.+++|+|++|.+.+..+..+|..+++|++|+++
T Consensus 2 ~~~CP~~C~C~~~~l~-------------~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~ 65 (220)
T 2v70_A 2 SLACPEKCRCEGTTVD-------------CSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS 65 (220)
T ss_dssp --CCCTTCEEETTEEE-------------CCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC
T ss_pred CCCCCCCCEECCCEeE-------------eCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECC
Confidence 3466777777654333 33344443 455443 3457777777777733344556667777777777
Q ss_pred CCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc
Q 040254 85 YNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164 (555)
Q Consensus 85 ~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n 164 (555)
+|+|++..+..|.. +++|++|++++|.+++..+..|.++++|++|++++|.+....|..|..+++|++|++++|
T Consensus 66 ~N~i~~i~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 66 NNKITDIEEGAFEG------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp SSCCCEECTTTTTT------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred CCcCCEECHHHhCC------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 77766555444433 336666666666666544445555555555555555555444444555555555555555
Q ss_pred cCcccccccccCCCCCcEEEcccCcc
Q 040254 165 KLSGFISNDIINLTSLLVLELYSKEL 190 (555)
Q Consensus 165 ~i~~~~~~~~~~l~~L~~L~L~~n~~ 190 (555)
.++++.+..|..+++|+.|++++|.+
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 140 QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 55544444444444444444444444
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.8e-18 Score=171.34 Aligned_cols=163 Identities=21% Similarity=0.158 Sum_probs=92.1
Q ss_pred CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHh-cCCCCCEEEcc
Q 040254 6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFH-FLTLLEIIDLS 84 (555)
Q Consensus 6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~-~l~~L~~L~Ls 84 (555)
.++...|.|....+.| ++++++. +|..+. +.+++|+|++|.++ .++...|. .+++|++|+|+
T Consensus 10 ~~Cp~~C~C~~~~l~c-------------~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~ 72 (361)
T 2xot_A 10 VSCPANCLCASNILSC-------------SKQQLPN-VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLS 72 (361)
T ss_dssp TTCCTTCEEETTEEEC-------------CSSCCSS-CCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECC
T ss_pred CCCCCCCEECCCEEEe-------------CCCCcCc-cCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECC
Confidence 4556666675433333 3333433 444443 34677777777776 56666665 67777777777
Q ss_pred CCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc
Q 040254 85 YNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164 (555)
Q Consensus 85 ~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n 164 (555)
+|+|+...+..|.. +++|++|++++|+++...+..|.++++|++|+|++|.+....+..|.++++|++|++++|
T Consensus 73 ~N~i~~i~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 73 HNHLNFISSEAFVP------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp SSCCCEECTTTTTT------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccChhhccC------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 77776655554443 336666666666666554555666666666666666655555555555566666666666
Q ss_pred cCcccccccc---cCCCCCcEEEcccCccc
Q 040254 165 KLSGFISNDI---INLTSLLVLELYSKELI 191 (555)
Q Consensus 165 ~i~~~~~~~~---~~l~~L~~L~L~~n~~~ 191 (555)
.++.+.+..| ..+++|+.|++++|.+.
T Consensus 147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5555443333 33444555555544444
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.7e-17 Score=152.95 Aligned_cols=164 Identities=22% Similarity=0.212 Sum_probs=120.3
Q ss_pred cCCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEcc
Q 040254 5 PAAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLS 84 (555)
Q Consensus 5 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 84 (555)
.++....+.|.+.++.|.... .+.+|..+. ++|++|+|++|.+. .++...|..+++|++|+|+
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~--------------l~~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKR--------------HASVPAGIP--TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLG 72 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSC--------------CSSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred hccCCCCCEEeCCEeEccCCC--------------cCccCCCCC--CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECC
Confidence 456666678888777776543 345555443 78899999999988 5666678888999999999
Q ss_pred CCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecc
Q 040254 85 YNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFN 164 (555)
Q Consensus 85 ~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n 164 (555)
+|+++...+..|.. +++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|
T Consensus 73 ~N~l~~i~~~~~~~------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 73 SNQLGALPVGVFDS------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp SSCCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred CCCCCCcChhhccc------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence 99887665555543 448888888888888766666788888888888877765 56777777777888888877
Q ss_pred cCcccccccccCCCCCcEEEcccCcccc
Q 040254 165 KLSGFISNDIINLTSLLVLELYSKELIG 192 (555)
Q Consensus 165 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~ 192 (555)
.++.+.+..+..+++|+.|++++|.+..
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 7777666667777777777777776653
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=152.25 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=76.5
Q ss_pred ccEEEccCCcCCccCC-ccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 108 MRLLDFSYNDFSSQVP-PRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 108 L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
+++|++++|.+++..+ ..|.++++|++|++++|.+....+..|.++++|++|++++|.++++.+..|..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4455555555544322 234555555555555555544444455555555556666665555555556666666666666
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 240 (555)
+|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 666665555566666666666666666665555566666666666666666553
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.6e-17 Score=152.13 Aligned_cols=134 Identities=20% Similarity=0.225 Sum_probs=85.9
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
+|++|++++|.+++..+..|..+++|++|++++|.+....|..|.++++|++|++++|.++.+.+..|.++++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 45556666665555444455666666666666666555555566666666666666666666555556666777777777
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 240 (555)
+|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 777666666666667777777777777765555556666777777777776653
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.3e-17 Score=159.84 Aligned_cols=184 Identities=20% Similarity=0.262 Sum_probs=114.8
Q ss_pred cCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEE
Q 040254 33 PAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLD 112 (555)
Q Consensus 33 ~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ 112 (555)
.+..+.+.+.. .+..+++|++|++++|.+. .++. +..+++|++|++++|++++..+ +. .+++|++|+
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~------~l~~L~~L~ 96 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LA------NLKNLGWLF 96 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GT------TCTTCCEEE
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cc------cCCCCCEEE
Confidence 34444444433 2445777778888877776 5553 6667777888887777775432 21 455777777
Q ss_pred ccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCcccc
Q 040254 113 FSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIG 192 (555)
Q Consensus 113 ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~ 192 (555)
+++|.+++ ++ .+..+++|++|++++|.+... ..+..+++|++|++++|.++++ ..+..+++|++|++++|.+.+
T Consensus 97 l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 97 LDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp CCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 77777764 32 367777777777777665543 3566667777777777776654 456666666666666666654
Q ss_pred CCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc
Q 040254 193 SIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA 239 (555)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 239 (555)
..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 433 5566666666666666653 22 3555666666666666554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.8e-17 Score=155.76 Aligned_cols=186 Identities=21% Similarity=0.267 Sum_probs=111.0
Q ss_pred EEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEE
Q 040254 56 LNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSF 135 (555)
Q Consensus 56 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 135 (555)
+.+..+.+.+..+ +..+++|++|++++|.+... +.+. .+++|++|++++|.+++. +. +.++++|++|
T Consensus 29 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~-----~~~~---~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L 95 (291)
T 1h6t_A 29 DNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV-----QGIQ---YLPNVTKLFLNGNKLTDI-KP-LANLKNLGWL 95 (291)
T ss_dssp HHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC-----TTGG---GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred HHhcCCCcccccc---hhhcCcccEEEccCCCcccC-----hhHh---cCCCCCEEEccCCccCCC-cc-cccCCCCCEE
Confidence 3455555542222 34567777777777776643 1111 445777777777777753 32 6777777777
Q ss_pred EccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCc
Q 040254 136 QAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLS 215 (555)
Q Consensus 136 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 215 (555)
++++|.+.. + ..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+... ..+..+++|++|++++|.+.
T Consensus 96 ~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 96 FLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 777766544 2 2366667777777777776654 3466666677777766666543 34566666666666666665
Q ss_pred ccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccc
Q 040254 216 GSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTG 265 (555)
Q Consensus 216 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 265 (555)
+..+ +..+++|++|++++|.+. .++ .+..+++|+.|++++|.+..
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~-~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCC-CCh--hhccCCCCCEEECcCCcccC
Confidence 3322 556666666666666655 232 25555566666665555543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=4.6e-17 Score=168.89 Aligned_cols=188 Identities=23% Similarity=0.248 Sum_probs=102.4
Q ss_pred CCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCC
Q 040254 77 LLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASL 156 (555)
Q Consensus 77 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 156 (555)
+|++|++++|++++ .|..++ ++|++|++++|.++. +| ..+++|++|++++|.+.+ +|. +.+ +|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--------~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--------PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--------TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TC
T ss_pred CccEEEeCCCCCCc-cCHhHc--------CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CC
Confidence 55555555555553 222111 245555555555552 34 234555555555555444 443 332 55
Q ss_pred CeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCc
Q 040254 157 EEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGN 236 (555)
Q Consensus 157 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 236 (555)
++|++++|.++++.. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|++++|
T Consensus 123 ~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred CEEECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 566666665555322 45566666666666553 333 34566666666666653 444 33 56666666666
Q ss_pred cCccccCcccccCCCCC-------cEEEcccccccccccccccCCCCCcEEEcccceecccCChhhhhcc
Q 040254 237 LFAGNLSAYNFSVLSQL-------ETIDLYINMFTGSFLLTLTSCRLLTALRLACNQLEGQIPPEIIKLK 299 (555)
Q Consensus 237 ~l~~~~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 299 (555)
.+. .++. +.. +| +.|++++|.++. .+..+..+++|+.|++++|++.+.+|..+..+.
T Consensus 191 ~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 191 LLE-SLPA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCS-SCCC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCC-chhh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 665 4443 222 44 777777777764 344455577777777777777776666666543
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=4.8e-17 Score=168.77 Aligned_cols=186 Identities=25% Similarity=0.261 Sum_probs=138.7
Q ss_pred CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR 131 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 131 (555)
+|++|++++|.++ .+|..+ +++|++|+|++|+|+. .| . .+++|++|++++|.+++ +|. +.+ +
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~-ip-~--------~l~~L~~L~Ls~N~l~~-ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALIS-LP-E--------LPASLEYLDACDNRLST-LPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSC-CC-C--------CCTTCCEEECCSSCCSC-CCC-CCT--T
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcc-cc-c--------ccCCCCEEEccCCCCCC-cch-hhc--C
Confidence 8888888888887 477654 3678888888888873 22 1 23488888888888886 665 554 8
Q ss_pred CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254 132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR 211 (555)
Q Consensus 132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 211 (555)
|++|++++|.+.+ +|. .+++|++|++++|.++++.. .+++|++|++++|.+.+ +|. |. ++|++|++++
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 8888888887766 555 57888888888888887433 56788889998888875 555 55 8888999998
Q ss_pred CcCcccCCccccCCCCC-------CEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccC
Q 040254 212 NNLSGSLPSSMMNCTNL-------KTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTS 273 (555)
Q Consensus 212 n~l~~~~~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 273 (555)
|.++ .+|. +.. +| ++|++++|.+. .+|.. +..+++|+.|++++|.+++..+..+..
T Consensus 190 N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 190 NLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 8888 5555 443 66 88999998887 57643 444888999999999888766665554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=4.3e-17 Score=150.31 Aligned_cols=152 Identities=22% Similarity=0.212 Sum_probs=115.9
Q ss_pred CcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcE
Q 040254 309 LNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFY 388 (555)
Q Consensus 309 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 388 (555)
.+.++.+++.++..+.. ..++|++|++++|.+++..+..+..+++|++|++++|++....+..|..+++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~--------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG--------IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTSCCSSCCSC--------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEeEccCCCcCccCCC--------CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 34566666666555532 2367888888888888777778888888888888888887666666788888888
Q ss_pred EEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCC
Q 040254 389 FALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLK 468 (555)
Q Consensus 389 L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~ 468 (555)
|+|++|++++..+..+..+..|. .|++++|+++ .+|..+..++
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~------------------------------------~L~Ls~N~l~-~lp~~~~~l~ 135 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLK------------------------------------ELFMCCNKLT-ELPRGIERLT 135 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCC------------------------------------EEECCSSCCC-SCCTTGGGCT
T ss_pred EECCCCcCCccChhHhCcchhhC------------------------------------eEeccCCccc-ccCcccccCC
Confidence 88888888865555566666665 4888888888 6777788888
Q ss_pred CCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 469 FLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 469 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
+|++|+|++|+|++..+..+..+++|+.|++++|+++
T Consensus 136 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8888888888888666677888888888888888876
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1e-17 Score=175.79 Aligned_cols=190 Identities=19% Similarity=0.246 Sum_probs=152.7
Q ss_pred eeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCC
Q 040254 28 NILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCS 107 (555)
Q Consensus 28 ~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~ 107 (555)
..+.+.+..+.+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|+|++|++++..+ +. .+++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~------~l~~ 88 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LT------NLKN 88 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GG------GCTT
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hc------cCCC
Confidence 34455566666666553 567889999999999988 6763 7789999999999999886543 22 5669
Q ss_pred ccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEccc
Q 040254 108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYS 187 (555)
Q Consensus 108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 187 (555)
|++|+|++|.+.+ ++ .+..+++|++|+|++|.+... ..+..+++|+.|++++|.++++ ..+..+++|+.|+|++
T Consensus 89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 9999999999985 33 688899999999998887653 4688899999999999999876 6788899999999999
Q ss_pred CccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254 188 KELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240 (555)
Q Consensus 188 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 240 (555)
|.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 99876655 88889999999999998843 358888999999999998763
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.9e-17 Score=145.30 Aligned_cols=154 Identities=13% Similarity=0.205 Sum_probs=96.0
Q ss_pred ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL 126 (555)
Q Consensus 47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 126 (555)
...+++|++|++++|.+. .++ .+..+++|++|++++|.++.. +.+. .+++|++|++++|.+++..+..+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~-----~~l~---~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNY-----NPIS---GLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSCC-----GGGT---TCTTCCEEEEECTTCBGGGSCCC
T ss_pred hhhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCcc-----hhhh---cCCCCCEEEeECCccCcccChhh
Confidence 355677777777777776 666 266677777777777765522 1111 45577777777777776556667
Q ss_pred cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeeccc-CcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254 127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNK-LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK 205 (555)
Q Consensus 127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 205 (555)
..+++|++|++++|.+....+..+..+++|++|++++|. ++.+ + .+..+++|++|++++|.+.+. + .+..+++|+
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~ 184 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLN 184 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCC
Confidence 777777777777776666566666667777777777765 5443 2 456666666666666665432 2 455555666
Q ss_pred eeeCccCcCc
Q 040254 206 YLLLYRNNLS 215 (555)
Q Consensus 206 ~L~L~~n~l~ 215 (555)
+|++++|.+.
T Consensus 185 ~L~l~~N~i~ 194 (197)
T 4ezg_A 185 QLYAFSQTIG 194 (197)
T ss_dssp EEEECBC---
T ss_pred EEEeeCcccC
Confidence 6666655543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.1e-16 Score=167.87 Aligned_cols=192 Identities=20% Similarity=0.231 Sum_probs=140.4
Q ss_pred CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC
Q 040254 52 HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSR 131 (555)
Q Consensus 52 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 131 (555)
.+..+.+..+.+.+ +.. +..+++|+.|++++|.+.... .+. .+++|++|+|++|.+.+..+ +..+++
T Consensus 22 ~l~~l~l~~~~i~~-~~~--~~~L~~L~~L~l~~n~i~~l~-----~l~---~l~~L~~L~Ls~N~l~~~~~--l~~l~~ 88 (605)
T 1m9s_A 22 ETIKDNLKKKSVTD-AVT--QNELNSIDQIIANNSDIKSVQ-----GIQ---YLPNVTKLFLNGNKLTDIKP--LTNLKN 88 (605)
T ss_dssp HHHHHHTTCSCTTS-EEC--HHHHTTCCCCBCTTCCCCCCT-----TGG---GCTTCCEEECTTSCCCCCGG--GGGCTT
T ss_pred HHHHHhccCCCccc-ccc--hhcCCCCCEEECcCCCCCCCh-----HHc---cCCCCCEEEeeCCCCCCChh--hccCCC
Confidence 34455666666663 332 456788888889888877432 222 46688888888888886333 788888
Q ss_pred CcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254 132 LKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR 211 (555)
Q Consensus 132 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 211 (555)
|++|+|++|.+.. ++ .+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+... ..+..+++|+.|+|++
T Consensus 89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 8888888887654 33 677888888888888888764 4577888888888888888654 4677788888888888
Q ss_pred CcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccc
Q 040254 212 NNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSF 267 (555)
Q Consensus 212 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 267 (555)
|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.+..
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEECCC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcCCc
Confidence 88875444 7778888888888888773 43 4777788888888888776543
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.3e-16 Score=143.49 Aligned_cols=151 Identities=18% Similarity=0.184 Sum_probs=117.8
Q ss_pred CCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCC
Q 040254 306 CKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPS 385 (555)
Q Consensus 306 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 385 (555)
+++|+.+++++|.+...+. . ..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++
T Consensus 43 l~~L~~L~l~~n~i~~l~~--l-----~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTG--I-----EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHTCCEEEEESSCCSCCTT--G-----GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred cCCccEEeccCCCccChHH--H-----hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 3466777777777665431 1 56778888898888765 3347788899999999999998777888888999
Q ss_pred CcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcc-ccccCChhc
Q 040254 386 LFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNS-LSGRIPAET 464 (555)
Q Consensus 386 L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~-l~~~~~~~~ 464 (555)
|++|++++|++++..+..+..++.|. .|++++|+ ++ .++ .+
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~------------------------------------~L~L~~n~~i~-~~~-~l 155 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVN------------------------------------SIDLSYNGAIT-DIM-PL 155 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCC------------------------------------EEECCSCTBCC-CCG-GG
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCC------------------------------------EEEccCCCCcc-ccH-hh
Confidence 99999999999877777777777776 58889888 55 455 68
Q ss_pred cCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 465 GQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 465 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
..+++|++|++++|++++ ++ .+..+++|++|++++|+|.
T Consensus 156 ~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 156 KTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 889999999999999985 43 7888999999999999985
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=3.5e-16 Score=139.88 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=32.1
Q ss_pred EEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
|++++|++++..+..|.++++|++|+|++|+|++..|..+..+++|++|++++|+++
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 445555555444444555555666666666665555555555556666666666554
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2.4e-16 Score=154.02 Aligned_cols=105 Identities=13% Similarity=-0.048 Sum_probs=75.7
Q ss_pred CCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCccccc
Q 040254 358 KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSH 437 (555)
Q Consensus 358 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~ 437 (555)
.+++|+++++++|+++.+...+|.++++|+.|++.+| +.......|.++..|.-
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~------------------------- 277 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG------------------------- 277 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE-------------------------
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE-------------------------
Confidence 3677777777777777666667777777777777776 55455555666655530
Q ss_pred ccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeC
Q 040254 438 QYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDL 499 (555)
Q Consensus 438 ~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 499 (555)
.+++.+ +++...+.+|.++++|+++++++|.++...+..|..+++|+.++.
T Consensus 278 ----------~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 278 ----------TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ----------EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ----------EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 256655 566566677888888888888888888777778888888888764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=3.4e-16 Score=147.41 Aligned_cols=122 Identities=23% Similarity=0.350 Sum_probs=56.9
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
+|++|++++|.+++ ++. +.++++|++|++++|.+.. ++. +.. ++|++|++++|.+++. ..+..+++|++|+++
T Consensus 64 ~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 64 NLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIR 136 (263)
T ss_dssp TCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECT
T ss_pred CCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECC
Confidence 44444444444443 221 4444444444444444332 111 111 4455555555555442 234455555555555
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA 239 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 239 (555)
+|.+.+. + .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 137 ~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 137 NNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 5555432 1 344555555555555555533 34555555555655555544
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=6.5e-16 Score=150.88 Aligned_cols=288 Identities=13% Similarity=0.090 Sum_probs=129.7
Q ss_pred CCCCCEEEccCCcCcCcCchhHHhc-CCCCCEEEccCCcCc--cccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254 50 LTHISHLNLSHNHVHGPLPINSFHF-LTLLEIIDLSYNSLS--GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL 126 (555)
Q Consensus 50 l~~L~~L~L~~n~~~~~i~~~~~~~-l~~L~~L~Ls~n~i~--~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 126 (555)
+++++.|.++++--. .....+.. +++|++|||++|++. ......++ .++.+.+..+.+ ...+|
T Consensus 24 ~~~l~~L~l~g~i~~--~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---------~~~~~~~~~~~I---~~~aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA--EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---------NGKFYIYMANFV---PAYAF 89 (329)
T ss_dssp HHHCSEEEEEEEECH--HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---------GGCCEEECTTEE---CTTTT
T ss_pred hCceeEEEEeccccH--HHHHHHHHhhccCeEEecCcceeEEecCcccccc---------cccccccccccc---CHHHh
Confidence 567888888764211 11123333 677888888888777 22222222 234444444422 23344
Q ss_pred cC--------CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCc
Q 040254 127 GN--------CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDI 198 (555)
Q Consensus 127 ~~--------l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l 198 (555)
.+ +++|+.+++.+ .+...-+.+|.++++|+++++..|.+..+.+.+|.++.++..+.........
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~------ 162 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR------ 162 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH------
T ss_pred cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh------
Confidence 45 66666666654 4444334445555555555555555555555555554444444433211100
Q ss_pred cCCCCCCeeeCccCcCcccCCccccCCCCCC-EEECcCccCccccCccccc---CCCCCcEEEcccccccccccccccCC
Q 040254 199 GKLTNLKYLLLYRNNLSGSLPSSMMNCTNLK-TLNLMGNLFAGNLSAYNFS---VLSQLETIDLYINMFTGSFLLTLTSC 274 (555)
Q Consensus 199 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~l~~~ 274 (555)
.........|..+..|+ .+.+.... .++...+. ...+++.+.+.++-...........+
T Consensus 163 --------------~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~ 225 (329)
T 3sb4_A 163 --------------FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYM 225 (329)
T ss_dssp --------------TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHC
T ss_pred --------------ccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhc
Confidence 00001111222233333 22221110 01100010 12233333333221110000001124
Q ss_pred CCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCcc-EEEccCcccccccc
Q 040254 275 RLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLR-AVSLAGCQLTGQVP 353 (555)
Q Consensus 275 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~ 353 (555)
++|+.++++.|.+. .+..-.|.+|.+|+.+++..| +......++ ..+++|+ .+.+.+ .++...+
T Consensus 226 ~~L~~l~L~~n~i~--------~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF-----~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 226 PNLVSLDISKTNAT--------TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF-----SNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp TTCCEEECTTBCCC--------EECTTTTTTCTTCCEEECCTT-CCEECTTTT-----TTCTTCCEEEEECT-TCCEECT
T ss_pred CCCeEEECCCCCcc--------eecHhhhhCCCCCCEEECCcc-cceehHHHh-----hCChhccEEEEEcc-cceEEch
Confidence 45555555554443 112223444444555555444 333333333 4555566 666655 4544455
Q ss_pred hhhhCCCCCcEEEccCCccccccCccccCCCCCcEEE
Q 040254 354 LWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFA 390 (555)
Q Consensus 354 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 390 (555)
.+|..|++|+.+++++|++..+.+.+|.++++|+.++
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666777777777766666656666677777776665
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2e-18 Score=180.17 Aligned_cols=122 Identities=22% Similarity=0.213 Sum_probs=71.8
Q ss_pred CccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhcc
Q 040254 337 NLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNK 416 (555)
Q Consensus 337 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~ 416 (555)
.|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..+..+++|++|+|++|.+++ +| .+..++.|.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~----- 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ----- 511 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC-----
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc-----
Confidence 35666666666653 443 666666666666666666 555666666666666666666664 44 455555544
Q ss_pred CCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccC-ChhccCCCCCCeeeCCCccceeecch---hhhCCc
Q 040254 417 FNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI-PAETGQLKFLNVLDLGNNNFAGSIPN---QISQLT 492 (555)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~ 492 (555)
.|++++|++++.. |..+..+++|++|+|++|.+++.+|. .+..++
T Consensus 512 -------------------------------~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 512 -------------------------------ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp -------------------------------EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred -------------------------------EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 3666666666554 66666666666666666666644332 123356
Q ss_pred cCCeeeC
Q 040254 493 ILERLDL 499 (555)
Q Consensus 493 ~L~~L~L 499 (555)
+|+.||+
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 6666653
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=8.5e-16 Score=144.67 Aligned_cols=149 Identities=25% Similarity=0.289 Sum_probs=70.1
Q ss_pred ccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCC
Q 040254 126 LGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLK 205 (555)
Q Consensus 126 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 205 (555)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.++++.+ +..+++|++|++++|.+.+. +. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-Cccc
Confidence 3344444444444443322 22 34444444444444444444322 44444555555555444322 21 112 4555
Q ss_pred eeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccc
Q 040254 206 YLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACN 285 (555)
Q Consensus 206 ~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 285 (555)
+|++++|.+++ + ..+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|
T Consensus 110 ~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 110 RLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred EEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 55555555542 2 234555555555555555542 22 344555555555555555543 34555556666666666
Q ss_pred eec
Q 040254 286 QLE 288 (555)
Q Consensus 286 ~~~ 288 (555)
++.
T Consensus 183 ~~~ 185 (263)
T 1xeu_A 183 KCV 185 (263)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=2.3e-14 Score=143.61 Aligned_cols=333 Identities=12% Similarity=0.060 Sum_probs=231.0
Q ss_pred CccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCc
Q 040254 38 LVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYND 117 (555)
Q Consensus 38 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 117 (555)
.++.....+|..|.+|+.+.|..+ +. .|+..+|.+|++|+.+++..+ ++......|. .+.+|+.+.+..+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~------~c~~L~~i~~p~~- 127 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFS------GCYALKSILLPLM- 127 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTT------TCTTCCCCCCCTT-
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhc------ccccchhhcccCc-
Confidence 466677788999999999999754 66 788899999999999999764 4444444443 3447777777654
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcC
Q 040254 118 FSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRD 197 (555)
Q Consensus 118 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 197 (555)
+......+|.++..+...... .....-..+|.++++|+.+.+..+ +..+....|.++.+|+.+.+..+ +.......
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~ 203 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYC 203 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTT
T ss_pred eeeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchh
Confidence 444555667777554444333 222333456888889999988755 44566778888999999988665 44455567
Q ss_pred ccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCC
Q 040254 198 IGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLL 277 (555)
Q Consensus 198 l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 277 (555)
|..+..|+.+.+..+... +.........|+.+.+.... . .+....|..+..++.+.+..+... ....++..+..+
T Consensus 204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l 278 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL 278 (394)
T ss_dssp TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC
T ss_pred hccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eecccccccccc
Confidence 888888888887765443 23344455788888886542 2 445567788888999888776433 556677888888
Q ss_pred cEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhh
Q 040254 278 TALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLS 357 (555)
Q Consensus 278 ~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 357 (555)
+.+......+. ...+..|.+|+.+.+..+ +......++ ..+.+|+.+++..+ ++.....+|.
T Consensus 279 ~~~~~~~~~i~-----------~~~F~~~~~L~~i~l~~~-i~~I~~~aF-----~~c~~L~~i~lp~~-v~~I~~~aF~ 340 (394)
T 4fs7_A 279 KKVIYGSVIVP-----------EKTFYGCSSLTEVKLLDS-VKFIGEEAF-----ESCTSLVSIDLPYL-VEEIGKRSFR 340 (394)
T ss_dssp CEEEECSSEEC-----------TTTTTTCTTCCEEEECTT-CCEECTTTT-----TTCTTCCEECCCTT-CCEECTTTTT
T ss_pred ceeccCceeec-----------cccccccccccccccccc-cceechhhh-----cCCCCCCEEEeCCc-ccEEhHHhcc
Confidence 88877655432 224677888998888754 444444443 67788999999654 6556678899
Q ss_pred CCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccc
Q 040254 358 KLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPL 410 (555)
Q Consensus 358 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 410 (555)
+|.+|+.+++..+ +..+...+|.+|++|+.+++..+ +. .+...|.+++.|
T Consensus 341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 9999999999877 66677788999999999998754 22 223345444444
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.2e-15 Score=131.67 Aligned_cols=135 Identities=23% Similarity=0.235 Sum_probs=114.0
Q ss_pred CCCCCccEEEccCcccc-cccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254 333 DGFQNLRAVSLAGCQLT-GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV 411 (555)
Q Consensus 333 ~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 411 (555)
..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++.|.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34577899999999987 56777788899999999999999855 6788899999999999999877777777777776
Q ss_pred hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccC-ChhccCCCCCCeeeCCCccceeecc---hh
Q 040254 412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRI-PAETGQLKFLNVLDLGNNNFAGSIP---NQ 487 (555)
Q Consensus 412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~ 487 (555)
.|++++|.+++.. +..+..+++|++|++++|.+++..+ ..
T Consensus 99 ------------------------------------~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 142 (168)
T 2ell_A 99 ------------------------------------HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV 142 (168)
T ss_dssp ------------------------------------EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH
T ss_pred ------------------------------------EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH
Confidence 5999999998542 2678999999999999999996655 58
Q ss_pred hhCCccCCeeeCCCCCCC
Q 040254 488 ISQLTILERLDLSKNHLS 505 (555)
Q Consensus 488 l~~l~~L~~L~Ls~N~l~ 505 (555)
+..+++|++|++++|.+.
T Consensus 143 ~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 143 FKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HTTCSSCCEETTEETTSC
T ss_pred HHhCccCcEecCCCCChh
Confidence 899999999999999986
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=4e-14 Score=141.16 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=193.8
Q ss_pred CCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccC
Q 040254 49 NLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGN 128 (555)
Q Consensus 49 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 128 (555)
.+..++.+.+.++ +. .|+..+|.++ +|+.+.+..+ ++.+....|.. ++|+.+.+.. .++.+...+|.+
T Consensus 111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-------~~L~~i~lp~-~l~~I~~~aF~~ 178 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-------STVQEIVFPS-TLEQLKEDIFYY 178 (401)
T ss_dssp ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-------CCCCEEECCT-TCCEECSSTTTT
T ss_pred ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-------CCceEEEeCC-CccEehHHHhhC
Confidence 3467788887664 44 6777888875 7888888765 55444444432 3688888876 566566678888
Q ss_pred CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeee
Q 040254 129 CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLL 208 (555)
Q Consensus 129 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 208 (555)
|++|+.+++..|.+...-...|. ...|+.+.+..+ ++.+...+|.++++|+.+++..+ +......+|.. .+|+.+.
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 88888888887666554444454 678888888744 77777788888888998888764 44455566776 7888888
Q ss_pred CccCcCcccCCccccCCCCCCEEECcCccCc----cccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEccc
Q 040254 209 LYRNNLSGSLPSSMMNCTNLKTLNLMGNLFA----GNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLAC 284 (555)
Q Consensus 209 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 284 (555)
+. +.+.......|..+++|+++.+.++.+. ..++...|.++++|+.+.+.+ .++.....+|..|.+|+.+.+..
T Consensus 255 lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred eC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 84 4565566678888889999988876543 135667888999999999984 46667788888999999998865
Q ss_pred ceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCC-CCccEEEccCcccc
Q 040254 285 NQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGF-QNLRAVSLAGCQLT 349 (555)
Q Consensus 285 n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~i~ 349 (555)
+ +. .+..-.|.+| +|+.+.+.+|.........+ .++ .+++.|.+..+.+.
T Consensus 333 ~-l~--------~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F-----~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 333 N-VT--------QINFSAFNNT-GIKEVKVEGTTPPQVFEKVW-----YGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-CC--------EECTTSSSSS-CCCEEEECCSSCCBCCCSSC-----CCSCTTCCEEEECGGGHH
T ss_pred c-cc--------EEcHHhCCCC-CCCEEEEcCCCCcccccccc-----cCCCCCccEEEeCHHHHH
Confidence 4 22 3444468888 89999999987776655444 444 46889998877654
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=4e-15 Score=133.00 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=74.9
Q ss_pred CCCccccCCccccCCCCCCEEEccCCcCcCcCch-hHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEcc
Q 040254 36 NKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPI-NSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFS 114 (555)
Q Consensus 36 ~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls 114 (555)
++++ +.+|..+.. ++++|++++|.+. .++. .+|..+++|++|+|++|+|++..+..|.. +++|++|+++
T Consensus 17 ~~~l-~~ip~~~~~--~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls 86 (192)
T 1w8a_A 17 GRGL-KEIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG------ASHIQELQLG 86 (192)
T ss_dssp TSCC-SSCCSCCCT--TCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT------CTTCCEEECC
T ss_pred CCCc-CcCccCCCC--CCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCC------cccCCEEECC
Confidence 3444 345554433 6777777777776 4443 35666777777777777777665555543 3367777777
Q ss_pred CCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc
Q 040254 115 YNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS 167 (555)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~ 167 (555)
+|++++..+..|.++++|++|++++|++.+..|..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 77766655555666666666666666665555555555566666666665554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.2e-15 Score=128.82 Aligned_cols=131 Identities=21% Similarity=0.185 Sum_probs=111.3
Q ss_pred CCCCCccEEEccCcccc-cccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccch
Q 040254 333 DGFQNLRAVSLAGCQLT-GQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLV 411 (555)
Q Consensus 333 ~~~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 411 (555)
..+++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..++.|.
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34577999999999987 67788888999999999999999865 6788899999999999999977777777777776
Q ss_pred hhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCcccccc-CChhccCCCCCCeeeCCCccceeecc---hh
Q 040254 412 IEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR-IPAETGQLKFLNVLDLGNNNFAGSIP---NQ 487 (555)
Q Consensus 412 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~ 487 (555)
.|++++|.+++. .+..+..+++|++|++++|.+++..+ ..
T Consensus 92 ------------------------------------~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 135 (149)
T 2je0_A 92 ------------------------------------HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135 (149)
T ss_dssp ------------------------------------EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHH
T ss_pred ------------------------------------EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHH
Confidence 599999999863 34778999999999999999996665 57
Q ss_pred hhCCccCCeeeCCC
Q 040254 488 ISQLTILERLDLSK 501 (555)
Q Consensus 488 l~~l~~L~~L~Ls~ 501 (555)
+..+++|++||+++
T Consensus 136 ~~~l~~L~~L~l~d 149 (149)
T 2je0_A 136 FKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHCTTCCEETTBC
T ss_pred HHHCCCcccccCCC
Confidence 89999999999874
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=7.5e-14 Score=139.19 Aligned_cols=268 Identities=11% Similarity=0.110 Sum_probs=145.5
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
.++.+.+.++ ++.+...+|.++ +|+.+.+..+ +...-..+|.+ .+|+.+.+.. .++.+...+|.++++|+.+++.
T Consensus 114 ~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 4555555432 333444455554 5666666532 33333334444 3466666654 4555555666666666666666
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 266 (555)
.|.+.......|. ..+|+.+.+..+ +.......|..+++|+.+.+..+ +. .+....|.+ .+|+.+.+. +.++..
T Consensus 189 ~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 189 KTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEE
Confidence 6666544444554 356666666533 44344555666666666666654 22 344455555 566666663 334444
Q ss_pred ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254 267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346 (555)
Q Consensus 267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 346 (555)
...+|..|++|+.+.+.++.+... ....+..-.|.+|++|+.+.+.. .+......++ ..+.+|+.+.+..+
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~---~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF-----~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDD---PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL-----GGNRKVTQLTIPAN 333 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCC---TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT-----TTCCSCCEEEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCC---cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh-----cCCCCccEEEECcc
Confidence 556666666666666665543310 11123333456666666666653 3444443333 55566666666443
Q ss_pred ccccccchhhhCCCCCcEEEccCCccccccCccccCCC-CCcEEEccCccC
Q 040254 347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLP-SLFYFALSQNNI 396 (555)
Q Consensus 347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 396 (555)
++.....+|..+ +|+.+++.+|.+.......|..++ +++.|.+..+.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 444445666666 677777776666655555566553 566666665554
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1e-14 Score=127.50 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=86.0
Q ss_pred CCCCEEEccCCcCc-cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254 76 TLLEIIDLSYNSLS-GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA 154 (555)
Q Consensus 76 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 154 (555)
++|++|++++|+++ +..|..+. .+++|++|++++|.+++. ..+..+++|++|++++|.+...+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA------EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG------GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHH------hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 55666666666665 33333333 233677777777776643 5566777777777777776665666666677
Q ss_pred CCCeeEeecccCccccc-ccccCCCCCcEEEcccCccccCCC---cCccCCCCCCeeeCccCcCc
Q 040254 155 SLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKELIGSIP---RDIGKLTNLKYLLLYRNNLS 215 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~~n~l~ 215 (555)
+|++|++++|.++++.. ..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777777777766432 566777777777777777764443 35666777777777777665
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=4.2e-16 Score=167.78 Aligned_cols=158 Identities=23% Similarity=0.287 Sum_probs=58.3
Q ss_pred CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC
Q 040254 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCS 130 (555)
Q Consensus 51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 130 (555)
+.++.|+|.++.+. .++. ..|+.++|+.+.|.+ ++++.|.+. ..+..+..++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~------~~l~~l~Ls~~~i~~--------------------~~~~~n~~~-~~~~~~~~l~ 224 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQ------ALLQHKKLSQYSIDE--------------------DDDIENRMV-MPKDSKYDDQ 224 (727)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CccceEEeeCCCCC-cchh------hHhhcCccCcccccC--------------------cccccccee-cChhhhccCC
Confidence 56777888777776 3333 234455555554432 222333333 2344455555
Q ss_pred CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCc
Q 040254 131 RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLY 210 (555)
Q Consensus 131 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 210 (555)
.|++|+|++|.+. .+|..+.++++|++|+|++|.++. .|..|..+++|++|+|++|.+. .+|..|..+++|++|+|+
T Consensus 225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 5555555554443 344444455555555555555552 3444555555555555555554 445555555555555555
Q ss_pred cCcCcccCCccccCCCCCCEEECcCccCcc
Q 040254 211 RNNLSGSLPSSMMNCTNLKTLNLMGNLFAG 240 (555)
Q Consensus 211 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 240 (555)
+|.+. .+|..+..+++|++|++++|.+.+
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 55554 444445555555555555555553
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=127.51 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=83.8
Q ss_pred CCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC
Q 040254 7 AGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN 86 (555)
Q Consensus 7 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 86 (555)
+++..|.|.+..+. +++++++ .+|..+. ++|++|++++|.+. .+| ..|..+++|++|+|++|
T Consensus 3 ~CP~~C~C~~~~l~-------------~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N 64 (193)
T 2wfh_A 3 RCPTECTCLDTVVR-------------CSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNN 64 (193)
T ss_dssp -CCTTCEEETTEEE-------------CTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSS
T ss_pred CCCCCCEeCCCEEE-------------cCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCC
Confidence 45566677543333 3334444 3444443 57888888888887 677 45777788888888888
Q ss_pred cCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccC
Q 040254 87 SLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKL 166 (555)
Q Consensus 87 ~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i 166 (555)
+|++..+..|.. +++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 65 ~i~~i~~~~f~~------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 65 RISTLSNQSFSN------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCCCCTTTTTT------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCEeCHhHccC------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 777665555543 33677777777777665555666666666666666655544444455555555555555554
Q ss_pred c
Q 040254 167 S 167 (555)
Q Consensus 167 ~ 167 (555)
.
T Consensus 139 ~ 139 (193)
T 2wfh_A 139 Y 139 (193)
T ss_dssp E
T ss_pred e
Confidence 3
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=2.3e-13 Score=136.31 Aligned_cols=323 Identities=13% Similarity=0.075 Sum_probs=231.0
Q ss_pred eeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCC
Q 040254 27 FNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFC 106 (555)
Q Consensus 27 ~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~ 106 (555)
..+..+.+. ++++.....+|.+|++|+.+++.++ +. .++..+|.++++|+.+.+..+ +.......|.. +
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~------~- 139 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG------C- 139 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT------C-
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeec------c-
Confidence 344444443 4577777789999999999999866 55 788899999999999887754 33333334432 1
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcc
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELY 186 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 186 (555)
.+....+... +......+|.++.+|+.+.+.. .....-...|.++.+|+.+.+..+ ++.+....|.++..|+.+.+.
T Consensus 140 ~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~-~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEG-VTVIGDEAFATCESLEYVSLPD-SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccCcc-ccccchhhhcccCCCcEEecCC-ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 2333333222 2334556799999999999974 344444567888999999999876 666777889999999999886
Q ss_pred cCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEccccccccc
Q 040254 187 SKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGS 266 (555)
Q Consensus 187 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 266 (555)
.+... +.+.+....+|+.+.+... +.......+..+..++.+.+..+.. .+....|..+..++.+......+
T Consensus 217 ~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i--- 288 (394)
T 4fs7_A 217 NSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV--- 288 (394)
T ss_dssp TTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---
T ss_pred CCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee---
Confidence 65432 2233344578888888654 3334556788889999999987643 35556788889999888776543
Q ss_pred ccccccCCCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCc
Q 040254 267 FLLTLTSCRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGC 346 (555)
Q Consensus 267 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 346 (555)
...++..+.+|+.+.+..+ + ..+..-.|.+|.+|+.+++..+ ++.....++ .++.+|+.+.+..+
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i--------~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF-----~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-V--------KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF-----RGCTSLSNINFPLS 353 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-C--------CEECTTTTTTCTTCCEECCCTT-CCEECTTTT-----TTCTTCCEECCCTT
T ss_pred ccccccccccccccccccc-c--------ceechhhhcCCCCCCEEEeCCc-ccEEhHHhc-----cCCCCCCEEEECcc
Confidence 3456788899999988654 2 2344456888999999998754 555544444 77889999999776
Q ss_pred ccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEE
Q 040254 347 QLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYF 389 (555)
Q Consensus 347 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 389 (555)
++.....+|.+|.+|+.+++..+ +. .+..+|.++++|+.+
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred -ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66566789999999999999865 33 345678899998876
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=6.2e-16 Score=161.31 Aligned_cols=198 Identities=17% Similarity=0.185 Sum_probs=144.4
Q ss_pred ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc-------------CccccCCCCccccccCCCCCccEEE-
Q 040254 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS-------------LSGELTGLIPSLAWNHSFCSMRLLD- 112 (555)
Q Consensus 47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~~~~~~~~~~L~~L~- 112 (555)
+..+++|+.|+|++|.+. .+|.. +..+++|++|++++|. +.+..|..+.. +++|+.|+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~------l~~L~~L~~ 416 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY------FSTLKAVDP 416 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH------HHHHHHHCG
T ss_pred cccCccceeccCChhhHH-hhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH------HHhcccCcc
Confidence 467899999999999998 78865 5669999999997764 33333333322 33666666
Q ss_pred ccCCcCCccCCc------cccC--CCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEE
Q 040254 113 FSYNDFSSQVPP------RLGN--CSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLE 184 (555)
Q Consensus 113 ls~n~l~~~~~~------~~~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 184 (555)
++.|.+.. ++. .+.. ...|++|++++|.+.+ +|. +..+++|++|++++|.++. .|..+..+++|+.|+
T Consensus 417 l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~ 492 (567)
T 1dce_A 417 MRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQ 492 (567)
T ss_dssp GGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEE
T ss_pred hhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEE
Confidence 44443321 110 0000 1258899999887765 565 8889999999999999985 567889999999999
Q ss_pred cccCccccCCCcCccCCCCCCeeeCccCcCcccC-CccccCCCCCCEEECcCccCccccCc--ccccCCCCCcEEEc
Q 040254 185 LYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSL-PSSMMNCTNLKTLNLMGNLFAGNLSA--YNFSVLSQLETIDL 258 (555)
Q Consensus 185 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l 258 (555)
+++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|++|++++|.+.+..+. ..+..+++|+.|++
T Consensus 493 Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 493 ASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999876 55 7888999999999999998665 88899999999999999988754331 12344788888864
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.6e-14 Score=126.00 Aligned_cols=92 Identities=24% Similarity=0.255 Sum_probs=44.3
Q ss_pred HhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCccCcCcccCCccccCCCC
Q 040254 148 DDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYRNNLSGSLPSSMMNCTN 227 (555)
Q Consensus 148 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~ 227 (555)
..|.++++|++|++++|.++.+.+..|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++
T Consensus 48 ~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (193)
T 2wfh_A 48 KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127 (193)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc
Confidence 33444444444444444444444444444444444444444444444444555555555555555555333334455555
Q ss_pred CCEEECcCccCc
Q 040254 228 LKTLNLMGNLFA 239 (555)
Q Consensus 228 L~~L~l~~n~l~ 239 (555)
|++|++++|++.
T Consensus 128 L~~L~L~~N~~~ 139 (193)
T 2wfh_A 128 LSHLAIGANPLY 139 (193)
T ss_dssp CCEEECCSSCEE
T ss_pred ccEEEeCCCCee
Confidence 555555555544
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2.7e-15 Score=161.51 Aligned_cols=150 Identities=24% Similarity=0.316 Sum_probs=85.3
Q ss_pred CCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCC
Q 040254 307 KNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSL 386 (555)
Q Consensus 307 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 386 (555)
++|+.|++++|.++.++ ..+ ..+++|+.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|
T Consensus 247 ~~L~~L~Ls~N~l~~lp-~~~-----~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L 318 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELP-AEI-----KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318 (727)
T ss_dssp CSCSCCBCTTSCCSCCC-GGG-----GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC
T ss_pred CCCCEEEeeCCcCcccC-hhh-----hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc
Confidence 34555555555555222 212 45678899999999998 67888999999999999999998 677789999999
Q ss_pred cEEEccCccCccccchhhhccccchhhhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccC
Q 040254 387 FYFALSQNNISGEFPKELSRLQPLVIEQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQ 466 (555)
Q Consensus 387 ~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~ 466 (555)
++|+|++|++++.+|..+..+....+ .+++++|.+++.+|..
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~-----------------------------------~l~l~~N~l~~~~p~~--- 360 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGL-----------------------------------IFYLRDNRPEIPLPHE--- 360 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHH-----------------------------------HHHHHHCCCCCCCCCC---
T ss_pred cEEeCCCCccCCCChHHHhhcchhhh-----------------------------------HHhhccCcccCcCccc---
Confidence 99999999999888877765432221 1556667776666543
Q ss_pred CCCCCeeeCCCc--------cceeecchhhhCCccCCeeeCCCCCCC
Q 040254 467 LKFLNVLDLGNN--------NFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 467 l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
|+.|++++| .+++..+..+..+..+....+++|-+.
T Consensus 361 ---l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 ---RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------------CCC
T ss_pred ---cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 555666666 333334444445555566666666653
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=4.6e-14 Score=124.41 Aligned_cols=128 Identities=24% Similarity=0.268 Sum_probs=78.3
Q ss_pred cEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhccCC
Q 040254 339 RAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNKFN 418 (555)
Q Consensus 339 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~~~ 418 (555)
+.+++++++++ .+|..+ .++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..++.|.
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~------- 79 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT------- 79 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC-------
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC-------
Confidence 45555555554 233222 24566666666666654445556666666666666666644444444544444
Q ss_pred CCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeee
Q 040254 419 RNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLD 498 (555)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 498 (555)
.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 80 -----------------------------~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 80 -----------------------------ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp -----------------------------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred -----------------------------EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 366666666655555566777778888888877755555567777788888
Q ss_pred CCCCCCC
Q 040254 499 LSKNHLS 505 (555)
Q Consensus 499 Ls~N~l~ 505 (555)
+++|+++
T Consensus 131 l~~N~~~ 137 (177)
T 2o6r_A 131 LHTNPWD 137 (177)
T ss_dssp CCSSCBC
T ss_pred ecCCCee
Confidence 8887775
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=2.1e-14 Score=122.66 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=70.3
Q ss_pred CCCCEEEccCCcCc-cccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCC
Q 040254 76 TLLEIIDLSYNSLS-GELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAA 154 (555)
Q Consensus 76 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 154 (555)
++|++|++++|.++ +..|..+. .+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTD------EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCT------TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHh------hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 44555555555554 23332222 233566666666655542 4455666666666666665555555555566
Q ss_pred CCCeeEeecccCcccc-cccccCCCCCcEEEcccCccccCCC---cCccCCCCCCeeeCc
Q 040254 155 SLEEPSLHFNKLSGFI-SNDIINLTSLLVLELYSKELIGSIP---RDIGKLTNLKYLLLY 210 (555)
Q Consensus 155 ~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~ 210 (555)
+|++|++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666666665532 2455666666666666666654433 245555666666554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=7.1e-14 Score=123.18 Aligned_cols=110 Identities=22% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC
Q 040254 51 THISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCS 130 (555)
Q Consensus 51 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 130 (555)
++|++|++++|.+. .++...|..+++|++|++++|++++..+..+. .+++|++|++++|.+++..+..+..++
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD------KLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT------TCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHcc------CCCccCEEECCCCCccccCHHHhhCCc
Confidence 46666777666666 55555566666666666666666644433333 233566666666655544444445555
Q ss_pred CCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCc
Q 040254 131 RLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLS 167 (555)
Q Consensus 131 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~ 167 (555)
+|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus 101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555555555444333323344444444444444443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.1e-13 Score=121.72 Aligned_cols=131 Identities=22% Similarity=0.205 Sum_probs=90.1
Q ss_pred CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE 413 (555)
Q Consensus 334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~ 413 (555)
.+++|+.|++++|+++ .++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+..|.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-- 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT-- 91 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC--
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC--
Confidence 3556777777777766 3343333334777777777777744 4567777777777777777754434445565555
Q ss_pred hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCCh--hccCCCCCCeeeCCCccceeecch----h
Q 040254 414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPA--ETGQLKFLNVLDLGNNNFAGSIPN----Q 487 (555)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~ 487 (555)
.|++++|+++ .+|. .+..+++|++|++++|.++ .+|. .
T Consensus 92 ----------------------------------~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~ 135 (176)
T 1a9n_A 92 ----------------------------------ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYV 135 (176)
T ss_dssp ----------------------------------EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHH
T ss_pred ----------------------------------EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHH
Confidence 4777777775 3444 6778888899999999888 4555 3
Q ss_pred hhCCccCCeeeCCCCCCC
Q 040254 488 ISQLTILERLDLSKNHLS 505 (555)
Q Consensus 488 l~~l~~L~~L~Ls~N~l~ 505 (555)
+..+++|+.||+++|.+.
T Consensus 136 ~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 136 IYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCTTCSEETTEECCHH
T ss_pred HHHCCccceeCCCcCCHH
Confidence 788889999999888875
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.2e-13 Score=121.52 Aligned_cols=133 Identities=16% Similarity=0.089 Sum_probs=70.4
Q ss_pred cccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040254 46 SIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPR 125 (555)
Q Consensus 46 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 125 (555)
.+.++++|++|++++|.+. .++. .....++|++|++++|++++. ..+. .+++|++|++++|.+++..+..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~------~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFP------LLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCC------CCSSCCEEECCSSCCCEECSCH
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccc------cCCCCCEEECCCCcccccCcch
Confidence 4556677777777777776 4543 333334677777777766643 2222 3446666666666666433333
Q ss_pred ccCCCCCcEEEccCCCCCCCCcH--hhhcCCCCCeeEeecccCcccccc---cccCCCCCcEEEcccCc
Q 040254 126 LGNCSRLKSFQAGYSNLLRSLPD--DIYAAASLEEPSLHFNKLSGFISN---DIINLTSLLVLELYSKE 189 (555)
Q Consensus 126 ~~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~L~~n~ 189 (555)
+..+++|++|++++|.+. .+|. .+..+++|++|++++|.++..... .+..+++|+.|++++|.
T Consensus 84 ~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 455666666666655542 2333 444555555555555555432211 24444444444444443
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=2.2e-11 Score=121.79 Aligned_cols=162 Identities=10% Similarity=0.048 Sum_probs=105.3
Q ss_pred ccccCCccccCCC-CCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc---CccccCCCCccccccCCCCCccEEEcc
Q 040254 39 VQRYHLPSIGNLT-HISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS---LSGELTGLIPSLAWNHSFCSMRLLDFS 114 (555)
Q Consensus 39 i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~~~~~~~~~L~~L~ls 114 (555)
++.....+|.++. .|+.+.+..+ ++ .|...+|.+|++|+.+.++.+. ++......|. .+.+|+.+.+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~------~c~~L~~i~~~ 122 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFM------FCSELTDIPIL 122 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTT------TCTTCCBCGGG
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhch------hcccceeeccC
Confidence 4556667888884 5999999765 55 7888999999999999998763 4433333333 33467776665
Q ss_pred CCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCC
Q 040254 115 YNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSI 194 (555)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 194 (555)
.+ ++.+...+|.++.+|+.+.+.. .....-...|..+..|+.+.+..+ ++.+...+|.+ ..|+.+.+..+.. ...
T Consensus 123 ~~-~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~ 197 (394)
T 4gt6_A 123 DS-VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIG 197 (394)
T ss_dssp TT-CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EEC
T ss_pred Cc-cceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccc
Confidence 54 4445556778888888888863 334444456777778888777654 45555555654 5677777754432 344
Q ss_pred CcCccCCCCCCeeeCccCc
Q 040254 195 PRDIGKLTNLKYLLLYRNN 213 (555)
Q Consensus 195 ~~~l~~l~~L~~L~L~~n~ 213 (555)
..+|..+.+++........
T Consensus 198 ~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSES 216 (394)
T ss_dssp TTTTTTCTTCCEEEECCSS
T ss_pred cchhhhccccceecccccc
Confidence 4556667777666655443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.6e-12 Score=113.46 Aligned_cols=57 Identities=23% Similarity=0.203 Sum_probs=38.7
Q ss_pred EEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+++
T Consensus 59 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555555555444445666777777777777777666666777777777777777775
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=8.5e-11 Score=117.54 Aligned_cols=128 Identities=15% Similarity=0.130 Sum_probs=59.6
Q ss_pred CCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchhh
Q 040254 334 GFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIE 413 (555)
Q Consensus 334 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~ 413 (555)
.+..|+.+.+..+... ....+|..++.|+.+.+. +.+..+...+|.+|.+|+.++|..+ ++.....+|.++..|.
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~-- 337 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE-- 337 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC--
T ss_pred ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC--
Confidence 3444555555433222 334455555666666654 2333344455666666666666543 3323333444444443
Q ss_pred hccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCcc
Q 040254 414 QNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTI 493 (555)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 493 (555)
++.+..+ ++.....+|.++++|+.+++.++... + ..+....+
T Consensus 338 ----------------------------------~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~ 379 (394)
T 4gt6_A 338 ----------------------------------RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W-NAISTDSG 379 (394)
T ss_dssp ----------------------------------EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCC
T ss_pred ----------------------------------EEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h-hhhhccCC
Confidence 2444322 44344556777777777777776543 1 34556667
Q ss_pred CCeeeCCCCCC
Q 040254 494 LERLDLSKNHL 504 (555)
Q Consensus 494 L~~L~Ls~N~l 504 (555)
|+.+.+..|.+
T Consensus 380 L~~i~i~~~~~ 390 (394)
T 4gt6_A 380 LQNLPVAPGSI 390 (394)
T ss_dssp C----------
T ss_pred CCEEEeCCCCE
Confidence 77777666554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=9.1e-15 Score=131.48 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=61.1
Q ss_pred HHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCCCCcHhh
Q 040254 71 SFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDI 150 (555)
Q Consensus 71 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 150 (555)
.|..+++|++|++++|++++. + .+. .+++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~------~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI-S-SLS------GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC-C-CHH------HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred HHhcCCCCCEEECCCCCCccc-c-ccc------cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence 355566666666666666541 1 222 2336666666666665 345555555566666666555443 23 45
Q ss_pred hcCCCCCeeEeecccCccccc-ccccCCCCCcEEEcccCccccC
Q 040254 151 YAAASLEEPSLHFNKLSGFIS-NDIINLTSLLVLELYSKELIGS 193 (555)
Q Consensus 151 ~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~ 193 (555)
..+++|++|++++|.++.... ..+..+++|++|++++|.+.+.
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555666666666666654332 3455556666666666655443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=2.9e-12 Score=112.11 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=38.7
Q ss_pred EEccCccccccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 449 IFLANNSLSGRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 449 l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++.
T Consensus 62 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555555555444444566777777777777777555555777777777777777775
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.6e-14 Score=129.90 Aligned_cols=130 Identities=20% Similarity=0.265 Sum_probs=89.6
Q ss_pred CCCCCccEEEccCcccccccchhhhCCCCCcEEEccCCccccccCccccCCCCCcEEEccCccCccccchhhhccccchh
Q 040254 333 DGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLLLSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVI 412 (555)
Q Consensus 333 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 412 (555)
..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..++.|.
T Consensus 45 ~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~- 118 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR- 118 (198)
T ss_dssp HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS-
T ss_pred hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC-
Confidence 445677777777777764 45 6677777888888877777 556666666778888888887774 33 455555554
Q ss_pred hhccCCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCC-hhccCCCCCCeeeCCCccceeecch-----
Q 040254 413 EQNKFNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIP-AETGQLKFLNVLDLGNNNFAGSIPN----- 486 (555)
Q Consensus 413 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----- 486 (555)
.|++++|++++..+ ..+..+++|++|++++|.+++.+|.
T Consensus 119 -----------------------------------~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 119 -----------------------------------VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp -----------------------------------EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred -----------------------------------EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence 47777777774322 4677788888888888888766554
Q ss_pred -----hhhCCccCCeeeCCCCCCC
Q 040254 487 -----QISQLTILERLDLSKNHLS 505 (555)
Q Consensus 487 -----~l~~l~~L~~L~Ls~N~l~ 505 (555)
.+..+++|+.|| +|.++
T Consensus 164 ~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHHhCCCcEEEC--CcccC
Confidence 267788888876 66654
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.1e-11 Score=108.36 Aligned_cols=116 Identities=20% Similarity=0.175 Sum_probs=78.8
Q ss_pred CCCCceEecccCcceeeccCceeeeeccCCCCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccC
Q 040254 6 AAGGQIISCHTEKSILRNHGGFNILMQPAMNKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSY 85 (555)
Q Consensus 6 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 85 (555)
.++..+|.|... .++++++.+ +.+|..+. ++|++|+|++|.+. .+++..|..+++|++|+|++
T Consensus 4 ~~CP~~C~C~~~-------------~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~ 66 (174)
T 2r9u_A 4 AGCPSQCSCDQT-------------LVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNS 66 (174)
T ss_dssp CSSCTTSEECSS-------------EEECCSSCC-SSCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCCEECCc-------------EEEeCCCCC-CccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCC
Confidence 355666666432 234444555 45565554 68888888888887 56666777788888888888
Q ss_pred CcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCcEEEccCCCCCC
Q 040254 86 NSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLLR 144 (555)
Q Consensus 86 n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 144 (555)
|+|++..+..|.. +++|++|++++|++++..+..|..+++|++|++++|.+..
T Consensus 67 N~l~~i~~~~~~~------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 67 NKLTAIPTGVFDK------LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCCccChhHhCC------cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8888665544443 4478888888888876555557777888888887776543
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.1e-11 Score=108.02 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=11.9
Q ss_pred ccEEEccCCcCCccCCccccCCCCCcEEEccC
Q 040254 108 MRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGY 139 (555)
Q Consensus 108 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (555)
|++|++++|.+++..+..|.++++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 63 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN 63 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCC
Confidence 33344444333333333333333333333333
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=8.1e-13 Score=130.43 Aligned_cols=117 Identities=17% Similarity=0.093 Sum_probs=57.9
Q ss_pred CCCCcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccc
Q 040254 274 CRLLTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVP 353 (555)
Q Consensus 274 ~~~L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 353 (555)
.+.|+.|++++|.++......+... ....+++|+.|++++|.++......+ ...+++|+.|++++|.++....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~---L~~~~~~L~~L~Ls~n~l~~~~~~~l----~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAV---LGSGRHALDEVNLASCQLDPAGLRTL----LPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHH---HSSCSSCEEEEECTTCCCCHHHHHHT----HHHHHTEEEEECCSSCCCHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHH---HhhCCCCceEEEecCCCCCHHHHHHH----HHHHHhccHhhcCCCCCCHHHH
Confidence 3567788888887764333333321 11223466666666665543221111 1223455666666665543322
Q ss_pred hhh-----hCCCCCcEEEccCCccccc----cCccccCCCCCcEEEccCccCc
Q 040254 354 LWL-----SKLTKLEVLLLSGNQITGS----IPGWFGNLPSLFYFALSQNNIS 397 (555)
Q Consensus 354 ~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 397 (555)
..+ ...+.|++|+|++|.+++. ++..+..+++|++|+|++|.++
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 222 1245566666666655432 2223345555666666666554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=7.9e-13 Score=130.51 Aligned_cols=164 Identities=14% Similarity=0.093 Sum_probs=91.5
Q ss_pred CCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc-cCCCCCcEEEccCCCCCCCCcHhh---
Q 040254 75 LTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL-GNCSRLKSFQAGYSNLLRSLPDDI--- 150 (555)
Q Consensus 75 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~--- 150 (555)
++.|++|+|++|.++......+..... ...++|++|+|++|.+++.....+ ..+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLG-SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHS-SCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHh-hCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 455666666666665433333322211 012366666666666654222222 234566677777666543322222
Q ss_pred --hcCCCCCeeEeecccCcccc----cccccCCCCCcEEEcccCccccCC----CcCccCCCCCCeeeCccCcCccc---
Q 040254 151 --YAAASLEEPSLHFNKLSGFI----SNDIINLTSLLVLELYSKELIGSI----PRDIGKLTNLKYLLLYRNNLSGS--- 217 (555)
Q Consensus 151 --~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~--- 217 (555)
...+.|++|++++|.++... +..+..+++|++|++++|.+.... ...+...++|+.|+|++|.++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 13466777777777665422 223456677777777777765322 33455566777778777777632
Q ss_pred -CCccccCCCCCCEEECcCccCc
Q 040254 218 -LPSSMMNCTNLKTLNLMGNLFA 239 (555)
Q Consensus 218 -~~~~l~~~~~L~~L~l~~n~l~ 239 (555)
++..+...++|++|++++|.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 2333445677888888888776
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=4e-09 Score=104.81 Aligned_cols=314 Identities=12% Similarity=0.069 Sum_probs=165.2
Q ss_pred ccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCccCCccc
Q 040254 47 IGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQVPPRL 126 (555)
Q Consensus 47 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 126 (555)
+....+|+.+.+... ++ .|+..+|.+|.+|+.+++..+ ++.+....|. -++|+.+.+..+ ++.+...+|
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~-------~c~l~~i~~~~~-l~~I~~~aF 110 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFA-------DTKLQSYTGMER-VKKFGDYVF 110 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTT-------TCCCCEEEECTT-CCEECTTTT
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhc-------CCCCceEECCce-eeEecccee
Confidence 445567888888654 54 677888888888888888653 4444434442 135777776644 444444556
Q ss_pred cCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCe
Q 040254 127 GNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKY 206 (555)
Q Consensus 127 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~ 206 (555)
..+ +|+.+.+..+ ....-...|.+ ..++.+.+..+ ++.+....|..+.+++...+............+.
T Consensus 111 ~~~-~L~~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~------- 179 (379)
T 4h09_A 111 QGT-DLDDFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL------- 179 (379)
T ss_dssp TTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-------
T ss_pred ccC-CcccccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeeccccee-------
Confidence 554 7888888743 33222233433 45666665543 4555566777888888877755433211110000
Q ss_pred eeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCCCcEEEcccce
Q 040254 207 LLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRLLTALRLACNQ 286 (555)
Q Consensus 207 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 286 (555)
.+... .....+.....+..+.+..... ......+.....++.+.+..+ +......++..+..|+.+.+..+
T Consensus 180 ----~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~- 250 (379)
T 4h09_A 180 ----YNKNK-TILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN- 250 (379)
T ss_dssp ----EETTS-SEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-
T ss_pred ----ccccc-ceecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-
Confidence 00000 1111222333344444332211 122233444455555555433 22233444555555555554332
Q ss_pred ecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhhhCCCCCcEEE
Q 040254 287 LEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWLSKLTKLEVLL 366 (555)
Q Consensus 287 ~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 366 (555)
+..+....+.+|..|+.+.+..+ +.......+ ..+.+|+.+.+.++.++.....+|.+|.+|+.+.
T Consensus 251 --------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF-----~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 251 --------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC-----SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp --------CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT-----TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred --------ccEeCccccceeehhcccccccc-ceecccccc-----ccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 11222334555556666655432 222222222 5566777777776666655566777777788877
Q ss_pred ccCCccccccCccccCCCCCcEEEccCccCccccchhhhcc
Q 040254 367 LSGNQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRL 407 (555)
Q Consensus 367 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 407 (555)
+..+ ++.+...+|.+|.+|+.+.+..+ ++..-..+|.+.
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 7654 55455667777778877777644 443334455444
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=8.4e-09 Score=102.47 Aligned_cols=304 Identities=13% Similarity=0.086 Sum_probs=204.2
Q ss_pred CCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC
Q 040254 37 KLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN 116 (555)
Q Consensus 37 ~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n 116 (555)
.+++.....+|.+|.+|+.++|..+ +. .|...+|.++ +|+.+.+..+ ++......| ..++|+.+.+..+
T Consensus 55 ~~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF-------~~~~L~~i~lp~~ 123 (379)
T 4h09_A 55 SGITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVF-------QGTDLDDFEFPGA 123 (379)
T ss_dssp TTEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTT-------TTCCCSEEECCTT
T ss_pred CCccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEecccee-------ccCCcccccCCCc
Confidence 5677777889999999999999765 65 7888999987 6888777643 443333333 2347999999875
Q ss_pred cCCccCCccccCCCCCcEEEccCCCCCCCCcHhhhcCCCCCeeEeecccCcccccccccCCCCCcEEEcccCccccCCCc
Q 040254 117 DFSSQVPPRLGNCSRLKSFQAGYSNLLRSLPDDIYAAASLEEPSLHFNKLSGFISNDIINLTSLLVLELYSKELIGSIPR 196 (555)
Q Consensus 117 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 196 (555)
++.....+|.++ .++.+.+.. .+...-...|.....++...+............+.. . .. .....
T Consensus 124 -~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-~--------~~---~~~~~ 188 (379)
T 4h09_A 124 -TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY-N--------KN---KTILE 188 (379)
T ss_dssp -CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE-E--------TT---SSEEE
T ss_pred -cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceec-c--------cc---cceec
Confidence 333444556655 577777653 344444556777888888887765433221111110 0 00 11112
Q ss_pred CccCCCCCCeeeCccCcCcccCCccccCCCCCCEEECcCccCccccCcccccCCCCCcEEEcccccccccccccccCCCC
Q 040254 197 DIGKLTNLKYLLLYRNNLSGSLPSSMMNCTNLKTLNLMGNLFAGNLSAYNFSVLSQLETIDLYINMFTGSFLLTLTSCRL 276 (555)
Q Consensus 197 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 276 (555)
.+.....+..+.+....-. .....+..+..|+.+.+..+ +. .+....|.++..|+.+.+..+ ++.....++..+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred cccccccccccccccceeE-Eeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 3344455666655443322 44556777788999988765 22 455567888999999999765 55566778888999
Q ss_pred CcEEEcccceecccCChhhhhcccccccCCCCCcEEEeccccCCCCCCccccccccCCCCCccEEEccCcccccccchhh
Q 040254 277 LTALRLACNQLEGQIPPEIIKLKSLILMGCKNLNVLFLTMNFMNEATPNYDQNKISDGFQNLRAVSLAGCQLTGQVPLWL 356 (555)
Q Consensus 277 L~~L~l~~n~~~~~~~~~l~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 356 (555)
|+.+.+..+ + ..+....|.+|.+|+.+.+..+.++.....++ ..+.+|+.+.+..+ ++.....+|
T Consensus 265 l~~i~l~~~-i--------~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF-----~~c~~L~~i~lp~~-l~~I~~~aF 329 (379)
T 4h09_A 265 LKTLNFYAK-V--------KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVF-----MDCVKLSSVTLPTA-LKTIQVYAF 329 (379)
T ss_dssp CCEEEECCC-C--------SEECTTTTTTCTTCCEEEECCTTCCEECTTTT-----TTCTTCCEEECCTT-CCEECTTTT
T ss_pred hcccccccc-c--------eeccccccccccccccccccccccceehhhhh-----cCCCCCCEEEcCcc-ccEEHHHHh
Confidence 999887543 2 23444568889999999998887777766655 77889999999754 555667889
Q ss_pred hCCCCCcEEEccCCccccccCccccCCCCC
Q 040254 357 SKLTKLEVLLLSGNQITGSIPGWFGNLPSL 386 (555)
Q Consensus 357 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 386 (555)
.+|.+|+.+.+..+ ++.+...+|.++..+
T Consensus 330 ~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 330 KNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred hCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 99999999999765 665666778776443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2.2e-10 Score=112.53 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=66.7
Q ss_pred cEEEccCc-ccccccchhhhCCCCCcEEEccC-CccccccCccccCCCCCcEEEccCccCccccchhhhccccchhhhcc
Q 040254 339 RAVSLAGC-QLTGQVPLWLSKLTKLEVLLLSG-NQITGSIPGWFGNLPSLFYFALSQNNISGEFPKELSRLQPLVIEQNK 416 (555)
Q Consensus 339 ~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~~~~~ 416 (555)
..++.+++ +++ .+|. +..+++|++|+|++ |++.+..+..|..+++|++|+|++|++++..|..|.+++.|.
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~----- 83 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS----- 83 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC-----
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC-----
Confidence 34566666 666 4555 66777777777775 777766666677777777777777777766666666666555
Q ss_pred CCCCCCCCCccccCCCcccccccccccCCCCEEEccCccccccCChhccCCCCCCeeeCCCccce
Q 040254 417 FNRNKPDLPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGRIPAETGQLKFLNVLDLGNNNFA 481 (555)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 481 (555)
.|+|++|+|++..+..|..++ |++|+|++|.+.
T Consensus 84 -------------------------------~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 -------------------------------RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -------------------------------EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -------------------------------EEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 366666666654444444444 666666666665
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=2.4e-10 Score=112.24 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=80.2
Q ss_pred CccccCCccccCCCCCCEEEccC-CcCcCcCchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCC
Q 040254 38 LVQRYHLPSIGNLTHISHLNLSH-NHVHGPLPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYN 116 (555)
Q Consensus 38 ~i~~~~~~~~~~l~~L~~L~L~~-n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n 116 (555)
++++ +|. |..+++|++|+|++ |.+. .++...|..+++|++|+|++|+|++..+..|.. +++|++|+|++|
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~l~~N 90 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF------TPRLSRLNLSFN 90 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGS------CSCCCEEECCSS
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcC------CcCCCEEeCCCC
Confidence 5654 777 99999999999996 9998 788888999999999999999999887777654 458999999999
Q ss_pred cCCccCCccccCCCCCcEEEccCCCCCC
Q 040254 117 DFSSQVPPRLGNCSRLKSFQAGYSNLLR 144 (555)
Q Consensus 117 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 144 (555)
++++..+..+..+. |++|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99975555666555 9999999887654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=7.7e-09 Score=101.03 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=49.2
Q ss_pred CCCCccEEEccCcccccccchhhh---CCCCCcEEEccCCccccc----cCccccCCCCCcEEEccCccCccccchhhh
Q 040254 334 GFQNLRAVSLAGCQLTGQVPLWLS---KLTKLEVLLLSGNQITGS----IPGWFGNLPSLFYFALSQNNISGEFPKELS 405 (555)
Q Consensus 334 ~~~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 405 (555)
.+|+|+.|++.+|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 467888888888877643333332 467889999998888764 233345578899999999888754444444
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=4.6e-08 Score=95.51 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=32.5
Q ss_pred CCCCCEEECcCccCccccCcccc--cCCCCCcEEEcccccccccccc----cccCCCCCcEEEcccceecc
Q 040254 225 CTNLKTLNLMGNLFAGNLSAYNF--SVLSQLETIDLYINMFTGSFLL----TLTSCRLLTALRLACNQLEG 289 (555)
Q Consensus 225 ~~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~~~~ 289 (555)
+++|++|++.+|.+.+......+ ..+++|++|+++.|.+.+.... .+..+++|+.|+++.|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 45666666666555422111111 2345666666666665543222 22334666666666665543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=3.7e-08 Score=86.76 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=67.5
Q ss_pred chhhhCCCCCcEEEccCC-ccccc----cCccccCCCCCcEEEccCccCccccc----hhhhccccchhhhccCCCCCCC
Q 040254 353 PLWLSKLTKLEVLLLSGN-QITGS----IPGWFGNLPSLFYFALSQNNISGEFP----KELSRLQPLVIEQNKFNRNKPD 423 (555)
Q Consensus 353 ~~~l~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~~~~~~~~~~~~ 423 (555)
...+...+.|++|+|++| .+.+. +...+...++|++|+|++|.+..... ..+...+.|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~------------ 96 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK------------ 96 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC------------
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC------------
Confidence 344555566666666666 55532 23334455666666666666653211 2222222222
Q ss_pred CCccccCCCcccccccccccCCCCEEEccCcccccc----CChhccCCCCCCeeeC--CCccceee----cchhhhCCcc
Q 040254 424 LPFFLFPNQNSTSHQYNRIFGLRPTIFLANNSLSGR----IPAETGQLKFLNVLDL--GNNNFAGS----IPNQISQLTI 493 (555)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~~~~~~l~L~~n~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~~~~l~~l~~ 493 (555)
+|+|++|.+... +...+...++|++|+| ++|.|++. +.+.+...++
T Consensus 97 ------------------------~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~ 152 (185)
T 1io0_A 97 ------------------------SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 152 (185)
T ss_dssp ------------------------EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS
T ss_pred ------------------------EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCC
Confidence 466666666542 2344566677888888 77888744 3345556678
Q ss_pred CCeeeCCCCCCC
Q 040254 494 LERLDLSKNHLS 505 (555)
Q Consensus 494 L~~L~Ls~N~l~ 505 (555)
|++|+|++|.|.
T Consensus 153 L~~L~L~~n~i~ 164 (185)
T 1io0_A 153 LLKFGYHFTQQG 164 (185)
T ss_dssp CCEEECCCSSHH
T ss_pred cCEEeccCCCCC
Confidence 888888888774
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=3.8e-08 Score=86.65 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=41.4
Q ss_pred CccccCCCCCCEEEccCC-cCcCcC---chhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCC
Q 040254 44 LPSIGNLTHISHLNLSHN-HVHGPL---PINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFS 119 (555)
Q Consensus 44 ~~~~~~l~~L~~L~L~~n-~~~~~i---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~ 119 (555)
...+...+.|++|+|++| .+.+.- -...+...+.|++|+|++|.|.+.....+..... ..+.|++|+|++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hCCCcCEEECcCCcCC
Confidence 334555666666666666 554210 1122334455666666666555332222221110 2234555555555554
Q ss_pred cc----CCccccCCCCCcEEEc
Q 040254 120 SQ----VPPRLGNCSRLKSFQA 137 (555)
Q Consensus 120 ~~----~~~~~~~l~~L~~L~L 137 (555)
+. +..++...+.|++|++
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEEe
Confidence 31 2233344444455544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=8.1e-07 Score=82.16 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=25.6
Q ss_pred hCCCCCcEEEccCCcccc--ccCccccCCCCCcEEEccCccCc
Q 040254 357 SKLTKLEVLLLSGNQITG--SIPGWFGNLPSLFYFALSQNNIS 397 (555)
Q Consensus 357 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~ 397 (555)
..++.|+.|+|++|++++ .++..+..+++|+.|+|++|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 446667777777776664 23344556666666666666665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=4.9e-06 Score=76.89 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=69.5
Q ss_pred ccCCCCCCE--EEccCCcCcCcCc---hhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCcc
Q 040254 47 IGNLTHISH--LNLSHNHVHGPLP---INSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSSQ 121 (555)
Q Consensus 47 ~~~l~~L~~--L~L~~n~~~~~i~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 121 (555)
|...+.|+. ++++.|... .++ ..+..++++|++|+|++|+|++.. .++... ..+++|++|+|++|.+++.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~--~l~~~~--~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLD--DMSSIV--QKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCG--GGTTHH--HHSTTCCEEECTTSCCCSG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCc--cchhHH--hhCCCCCEEECCCCccCCc
Confidence 455555555 677777433 222 223456889999999999888632 122111 1456899999999988863
Q ss_pred -CCccccCCCCCcEEEccCCCCCCCCc-------HhhhcCCCCCeeEe
Q 040254 122 -VPPRLGNCSRLKSFQAGYSNLLRSLP-------DDIYAAASLEEPSL 161 (555)
Q Consensus 122 -~~~~~~~l~~L~~L~L~~~~~~~~~~-------~~~~~l~~L~~L~l 161 (555)
....+..+ +|++|+|++|.+.+.+| ..+..+++|+.||-
T Consensus 212 ~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 212 RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 11223334 89999999888776544 24667888887763
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=5.1e-06 Score=71.10 Aligned_cols=83 Identities=8% Similarity=-0.024 Sum_probs=52.3
Q ss_pred CccEEEccCCcCCccCCccccCCCCCcEEEccCCCCC-CCCcHhhhcC----CCCCeeEeeccc-CcccccccccCCCCC
Q 040254 107 SMRLLDFSYNDFSSQVPPRLGNCSRLKSFQAGYSNLL-RSLPDDIYAA----ASLEEPSLHFNK-LSGFISNDIINLTSL 180 (555)
Q Consensus 107 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~l~~L 180 (555)
+|++||++++.++...-..+.++++|++|+|++|... ..--..+..+ ++|++|++++|. ++......+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 5777777777766544455677777888888777533 2222234433 357777777764 665444556667777
Q ss_pred cEEEcccCc
Q 040254 181 LVLELYSKE 189 (555)
Q Consensus 181 ~~L~L~~n~ 189 (555)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777765
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=2.8e-06 Score=72.69 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=59.0
Q ss_pred cCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCc-CccccCCCCccccccCCCCCccEEEccCCc-CC
Q 040254 42 YHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNS-LSGELTGLIPSLAWNHSFCSMRLLDFSYND-FS 119 (555)
Q Consensus 42 ~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~ 119 (555)
.+|.....-.+|++||++++.++ +.....+..+++|++|+|++|. |++.....+.... ...++|++|++++|. ++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~It-d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~--~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE--NLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCC-GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH--HHHHHCCEEEEESCTTCC
T ss_pred cCCcccCCCceEeEEeCcCCCcc-HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc--cccCCCCEEEcCCCCcCC
Confidence 33443333347888888888776 3433445678888888888874 6643222222110 001257788887774 66
Q ss_pred ccCCccccCCCCCcEEEccCCCCCC
Q 040254 120 SQVPPRLGNCSRLKSFQAGYSNLLR 144 (555)
Q Consensus 120 ~~~~~~~~~l~~L~~L~L~~~~~~~ 144 (555)
+..-..+..+++|++|++++|...+
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCC
Confidence 5434456667777777777765443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=7.3e-05 Score=65.21 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=72.4
Q ss_pred ccccCCCCCCEEEccCC-cCcCc---CchhHHhcCCCCCEEEccCCcCccccCCCCccccccCCCCCccEEEccCCcCCc
Q 040254 45 PSIGNLTHISHLNLSHN-HVHGP---LPINSFHFLTLLEIIDLSYNSLSGELTGLIPSLAWNHSFCSMRLLDFSYNDFSS 120 (555)
Q Consensus 45 ~~~~~l~~L~~L~L~~n-~~~~~---i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 120 (555)
..+.+-+.|++|+|+++ .+.+. .-..++...+.|++|+|++|+|.+.....+..... .-..|++|+|++|.|..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~--~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--TSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--HCSSCCEEECCSSBCCH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh--cCCccCeEecCCCcCCH
Confidence 34556678888888875 66521 11233455677888888888888665555554332 33468888888888775
Q ss_pred ----cCCccccCCCCCcEEEccCCCC---CC----CCcHhhhcCCCCCeeEeecccC
Q 040254 121 ----QVPPRLGNCSRLKSFQAGYSNL---LR----SLPDDIYAAASLEEPSLHFNKL 166 (555)
Q Consensus 121 ----~~~~~~~~l~~L~~L~L~~~~~---~~----~~~~~~~~l~~L~~L~l~~n~i 166 (555)
.+.+++..-..|++|+|+++.. .. .+...+...+.|+.|+++.+.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2334455556677887764321 11 1233455556677777665543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=0.00021 Score=62.37 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=21.7
Q ss_pred ccCCCCCCeeeCCCc---cceee----cchhhhCCccCCeeeCCCCCC
Q 040254 464 TGQLKFLNVLDLGNN---NFAGS----IPNQISQLTILERLDLSKNHL 504 (555)
Q Consensus 464 ~~~l~~L~~L~Ls~N---~l~~~----~~~~l~~l~~L~~L~Ls~N~l 504 (555)
+..-+.|++|+|++| .+... +.+.+..-++|+.|+++.|.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334455666666654 33321 334455556677777766543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.19 E-value=0.00056 Score=55.66 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=42.1
Q ss_pred cCCCCCcc-ccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCCcCc
Q 040254 33 PAMNKLVQ-RYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYNSLS 89 (555)
Q Consensus 33 ~~~~~~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~i~ 89 (555)
+.++++++ ..+|..+. ++|++|+|++|.++ .++..+|..+++|++|+|++|.+.
T Consensus 14 ~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 14 DCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp ECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 34444554 35665543 37899999999998 899999999999999999999776
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.00084 Score=54.58 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=44.8
Q ss_pred EEEccCcccc-ccCChhccCCCCCCeeeCCCccceeecchhhhCCccCCeeeCCCCCCC
Q 040254 448 TIFLANNSLS-GRIPAETGQLKFLNVLDLGNNNFAGSIPNQISQLTILERLDLSKNHLS 505 (555)
Q Consensus 448 ~l~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 505 (555)
.++.++++++ ..+|..+. ++|++|+|++|+|+...++.|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5888888886 35665432 46899999999999777778888999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.66 E-value=2.7 Score=31.68 Aligned_cols=49 Identities=20% Similarity=0.084 Sum_probs=39.9
Q ss_pred CCCccccCCccccCCCCCCEEEccCCcCcCcCchhHHhcCCCCCEEEccCC
Q 040254 36 NKLVQRYHLPSIGNLTHISHLNLSHNHVHGPLPINSFHFLTLLEIIDLSYN 86 (555)
Q Consensus 36 ~~~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 86 (555)
...++..-..+|..|..|+.+.+..+ +. .|...+|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 34567777788999999999999876 44 688888999999999998874
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.41 E-value=15 Score=27.47 Aligned_cols=45 Identities=13% Similarity=0.020 Sum_probs=21.3
Q ss_pred CcccccccccCCCCCcEEEcccCccccCCCcCccCCCCCCeeeCcc
Q 040254 166 LSGFISNDIINLTSLLVLELYSKELIGSIPRDIGKLTNLKYLLLYR 211 (555)
Q Consensus 166 i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 211 (555)
++.+...+|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555332 2223334455555555555443
Done!