BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040255
(869 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 86/160 (53%), Gaps = 25/160 (15%)
Query: 2 YDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDD-QLIRGDNISQSLLGTIEASCIAII 60
YDVFLSFRG DTR NF S L+ L +SI+TF DD +L G S L IE S A++
Sbjct: 9 YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVV 68
Query: 61 IFSERYASSRW---------------------FFYRVDPSHVRKQSHSFGRHFSRLRKRF 99
+ SE YA+S W FY V+P+HVR Q+ F + R
Sbjct: 69 VVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE 128
Query: 100 -PEKMKRWKNALTEAADLSGFDSNVIRPESKLIEEIANDV 138
PEK+ +W+ ALT A LSG S +SKL+++IAN++
Sbjct: 129 DPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEI 166
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 24/161 (14%)
Query: 2 YDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTF-IDDQLIRGDNISQSLLGTIEASCIAII 60
Y+VFLSFRG DTR+ FT L+ L I TF DD+L++G I +LL I+ S I +
Sbjct: 36 YEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVP 95
Query: 61 IFSERYASSRW----------------------FFYRVDPSHVRKQSHSFGRHFSRLRKR 98
I S YA S+W FY VDPS VR Q+ + + F + +
Sbjct: 96 IISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK 155
Query: 99 FP-EKMKRWKNALTEAADLSGFDSNVIRPESKLIEEIANDV 138
F + ++ WK+AL + DL G+ + + ++++ D+
Sbjct: 156 FDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 546 WDDVQRLPSSLCTFKTPITFEIIDCKMLERLPD--ELENLEYLTVKG-TTIRELPESLGR 602
W ++ LP+S+ + + +I + + P L LE L ++G T +R P G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 603 LSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLP----ELPCN 650
+ +KRLIL + SNL +P I L++L L + C L LP +LP N
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 22/123 (17%)
Query: 568 IDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIP------ 621
+D L++LPD +LE++ + ELPE L L ++ + NNS L+++P
Sbjct: 160 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNS-LKKLPDLPLSL 217
Query: 622 ----------ESIRHLSKLTFLFISHCER--LQTLPELPCNLGLLSARN--CTSLEKLPA 667
E + L L FL + + L+TLP+LP +L L+ R+ T L +LP
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQ 277
Query: 668 GLS 670
L+
Sbjct: 278 SLT 280
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 573 LERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTF 632
L LP LE L+ + +T+ ELP SL L +N+ L +PE L L
Sbjct: 95 LPELPASLEYLDACDNRLSTLPELPASLKHLD-------VDNNQLTXLPE----LPALLE 143
Query: 633 LFISHCERLQTLPELPCNLGLLSARN--CTSLEKLPAGLSSM 672
+ +L LPELP +L +LS RN T L +LP L ++
Sbjct: 144 YINADNNQLTXLPELPTSLEVLSVRNNQLTFLPELPESLEAL 185
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 18/177 (10%)
Query: 473 EIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKL 532
E+ +N S +P D ++ LE A + E P L+ L+ C +L
Sbjct: 63 ELQLNRLNLSSLP---------DNLPPQITVLEITQNALISLPELP-ASLEYLDACDNRL 112
Query: 533 VSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDELENLEYLTVKG-- 590
+L ++ L D +L + L + + D L LP+ +LE L+V+
Sbjct: 113 STLPELPASLKHLDVDNNQL-TXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRNNQ 171
Query: 591 -TTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPE 646
T + ELPESL L L+ S L +P H + F R+ +PE
Sbjct: 172 LTFLPELPESLEALDVSTNLLES----LPAVPVRNHHSEETEIFFRCRENRITHIPE 224
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 118/293 (40%), Gaps = 70/293 (23%)
Query: 499 CMVSHLEGVPFAEVRHLEWPQCP--LKTLNICAEKLVSLKMPCTKVEQL------WDDVQ 550
C+ +H+ + + P P L+TL + +L SL + + +L +
Sbjct: 58 CLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP 117
Query: 551 RLPSSLC---TFKTPIT-----------FEIIDCKM--LERLPDELENLEYLTVKGTTIR 594
LPS LC F +T + D ++ L LP EL L + T++
Sbjct: 118 ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP 177
Query: 595 ELPESLGRLSWVKRLILSNN--SNLERIPESIRHL----SKLTFL---------FISHCE 639
LP L LS +S+N ++L +P + L ++LT L I
Sbjct: 178 MLPSGLQELS------VSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN 231
Query: 640 RLQTLPELPCNLG--LLSARNCTSLEKLPAGLSSMS-----------SVLYVNLCNFLKL 686
RL +LP LP L ++S TSL LP+GL S+S S+++++ + L
Sbjct: 232 RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291
Query: 687 DPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQSMGSSATLKTR 739
+ N LSE +L R I + + G I R G+SA +TR
Sbjct: 292 EGNPLSE--------RTLQALREITSAPGYSGPII----RFDMAGASAPRETR 332
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 552 LPSSLCTFKTPITFEIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLIL 611
LP L T + + L LP EL LE + T++ LP L LS I
Sbjct: 55 LPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELS-----IF 109
Query: 612 SNN-SNLERIPESI-------RHLSKLTFLFISHCE------RLQTLPELPCNLGLLSAR 657
SN ++L +P + L+ L L E +L +LP LP L L A
Sbjct: 110 SNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAY 169
Query: 658 N--CTSLEKLPAGLSSMS 673
N TSL LP+GL +S
Sbjct: 170 NNQLTSLPMLPSGLQELS 187
>pdb|2A5H|A Chain A, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|B Chain B, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|C Chain C, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|D Chain D, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate)
Length = 416
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 289 LVYADAHKLFCQWA----FGGDHLDASHIELTDKAIKYAQGVPLALKVL--GCYLCGRSK 342
L+ D +C+ F G D+ E DKAI Y + P VL G S
Sbjct: 119 LLITDXCSXYCRHCTRRRFAGQSDDSXPXERIDKAIDYIRNTPQVRDVLLSGGDALLVSD 178
Query: 343 EVWESAMRKLEIIPHVEI 360
E E + KL IPHVEI
Sbjct: 179 ETLEYIIAKLREIPHVEI 196
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 2 YDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDDQLIR-GDNISQSLLGTIEASCIAII 60
+D+F+S ED D F L H L + + DD +R GD++ +S+ + +S I+
Sbjct: 21 HDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIV 79
Query: 61 IFSERYASSRW 71
+ S + W
Sbjct: 80 VLSTHFFKKEW 90
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 593 IRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPELPC-NL 651
I+E+ S + + L LS+N+NLE +P + H + + R+ +LP NL
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225
Query: 652 GLLSARNCTSLEKLPA 667
L AR+ +L+KLP
Sbjct: 226 KKLRARSTYNLKKLPT 241
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 595 ELPESLGRLSWVKRLILSNNSNL-ERIPESIRHLSKLTFLFISHCERLQTLPELPCNLGL 653
+P SL L ++ L + +NL IP +I L++L +L+I+H +P+ +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 654 LS----ARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHS-LYEER 708
L + N S LP +SS+ +++ + D N +S + D + S L+
Sbjct: 127 LVTLDFSYNALS-GTLPPSISSLPNLVGI------TFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 709 GIKKSMYFPGNEIPKWFRHQSMG 731
I ++ +IP F + ++
Sbjct: 180 TISRNRL--TGKIPPTFANLNLA 200
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 38 LIRGDNISQSLLGTIEASCIAIIIFSERYASSRWFFYRVDPSHVR 82
I G I +++ +IE S + + SE + S W Y +D SH R
Sbjct: 44 FIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFR 88
>pdb|3UK8|A Chain A, The Crystal Structure Of The Cd-Bound Domain 3 Of The
Cadmium Carbonic Anhydrase From Marine Diatom
Thalassiosira Weissflogii
pdb|3UK8|B Chain B, The Crystal Structure Of The Cd-Bound Domain 3 Of The
Cadmium Carbonic Anhydrase From Marine Diatom
Thalassiosira Weissflogii
Length = 231
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 645 PELPCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSE-IVKDGW 699
PE + G L+ R + ++ G S V+Y+NL + + L+PNE + + DGW
Sbjct: 143 PEFDADQGALAVRAAGGVIEMHHG-SHEEKVVYINLVSGMTLEPNEHDQRFIVDGW 197
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 38 LIRGDNISQSLLGTIEASCIAIIIFSERYASSRWFFYRVDPSHVR 82
I G I +++ +IE S + + SE + S W Y +D SH R
Sbjct: 44 FIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFR 88
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 571 KMLERLPDELENLEYLTVKGTTIRELPESL-GRLSWVKRLILSNNSNLERIPESI 624
+M L D+LENLE + +R++P + G++ +K+L L++N L+ +P+ I
Sbjct: 160 EMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ-LKSVPDGI 213
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 604 SWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPELPC-NLGLLSARNCTSL 662
+ + L LS+N+NLE +P + H + + R+ +LP NL L AR+ +L
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
Query: 663 EKLPA 667
+KLP
Sbjct: 237 KKLPT 241
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
Length = 146
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 38 LIRGDNISQSLLGTIEASCIAIIIFSERYASSRWFFYRVDPSHVR 82
I G I +++ +IE S + + SE + S W Y +D SH R
Sbjct: 41 FIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWSKYELDFSHFR 85
>pdb|3GZT|B Chain B, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|O Chain O, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|P Chain P, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|Q Chain Q, Vp7 Recoated Rotavirus Dlp
Length = 255
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 684 LKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQSMGSSATLKTRP 740
L+LD +EL++++ + W+ + + I Y +E KW SMGSS T+K P
Sbjct: 91 LQLDMSELADLILNEWLCNPM----DITLYYYQQTDEANKWI---SMGSSCTIKVCP 140
>pdb|3FMG|A Chain A, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
pdb|3IYU|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|P Chain P, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Q Chain Q, Atomic Model Of An Infectious Rotavirus Particle
Length = 276
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 684 LKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQSMGSSATLKTRP 740
L+LD +EL++++ + W+ + + I Y +E KW SMGSS T+K P
Sbjct: 98 LQLDMSELADLILNEWLCNPM----DITLYYYQQTDEANKWI---SMGSSCTIKVCP 147
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 547 DDVQRLPSSLCTFKTPITFEIIDCKMLERLPD----ELENLEYLTVKGTTIRELPESL-G 601
+ +Q LP+ + T + ++ L+ LPD +L NL YL + ++ LP+ +
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154
Query: 602 RLSWVKRLILSNNSNLERIPESIRHLSKLTFL 633
+L+ + L LS N L+ +PE + KLT L
Sbjct: 155 KLTNLTELDLSYN-QLQSLPEGV--FDKLTQL 183
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 580 LENLEYLTVKGTTIRELPESL-GRLSWVKRLILSNNSNLER-IPESIRHLSKLTFLFISH 637
L NL YL + T R + LS ++ L ++ NS E +P+ L LTFL +S
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 638 CERLQTLPELPCNLGLLSARNCTS--LEKLPAGL 669
C+ Q P +L L N S L+ +P G+
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 475 HMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLE---WPQCPLKTLNICAEK 531
H+ SY+F P+L+ L D ++C + +E + + HL P+++L + A
Sbjct: 42 HLGSYSFFSFPELQVL----DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Query: 532 LVSLKMPCTKVEQLWDDVQRLP-SSLCTFK-TPITFEIIDCKMLERLPDELENLEYLTVK 589
+S VE ++ P L T K + +I L L NLE+L +
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 590 GTTIREL 596
I+ +
Sbjct: 158 SNKIQSI 164
>pdb|1T70|A Chain A, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|B Chain B, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|C Chain C, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|D Chain D, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|E Chain E, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|F Chain F, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|G Chain G, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|H Chain H, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
Length = 255
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 439 NRLWHHKDIYQVLKKNT 455
N WHHKDIY +L ++T
Sbjct: 65 NHAWHHKDIYPMLSEDT 81
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 548 DVQRLP---SSLCTFKTPITFEIIDCK--MLERLPDELE-NLEYLTVKGTTIREL-PESL 600
D+ LP S++C F ++ C L+ +P E+ + L ++ I EL +
Sbjct: 15 DLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF 74
Query: 601 GRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPELPCNLGLLSARNCT 660
L + L+L NN + ++ L KL L+IS ++ P LP +L L +
Sbjct: 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHD-N 133
Query: 661 SLEKLPAGLSS 671
+ K+P G+ S
Sbjct: 134 RIRKVPKGVFS 144
>pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With
Partially Disordered Adomet
pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex
With Adomet And A Peptide Substrate
Length = 245
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKN 497
E + + LD+ ++N EIH N S L F ++ +KN
Sbjct: 121 EVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKN 160
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 576 LPDELENLEYLTVKGTTIREL----PESLGRLSWVKRLILSNNSNLERIPESIRHLSKLT 631
+P E+ ++ YL + ++ P+ +G L + L LS+N RIP+++ L+ LT
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 632 FLFISHCERLQTLPEL 647
+ +S+ +PE+
Sbjct: 705 EIDLSNNNLSGPIPEM 720
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,135,148
Number of Sequences: 62578
Number of extensions: 1096295
Number of successful extensions: 2778
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2723
Number of HSP's gapped (non-prelim): 79
length of query: 869
length of database: 14,973,337
effective HSP length: 107
effective length of query: 762
effective length of database: 8,277,491
effective search space: 6307448142
effective search space used: 6307448142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)