Query 040255
Match_columns 869
No_of_seqs 783 out of 6026
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-124 5E-129 1177.5 73.2 844 1-864 12-1101(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-53 5E-58 507.6 27.2 420 154-637 161-651 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.6E-36 3.5E-41 328.0 17.3 241 156-400 1-278 (287)
4 PLN03194 putative disease resi 100.0 3.9E-36 8.4E-41 286.2 11.4 134 1-144 26-179 (187)
5 PLN00113 leucine-rich repeat r 99.8 1.7E-19 3.7E-24 227.7 11.9 238 434-682 43-293 (968)
6 PLN00113 leucine-rich repeat r 99.7 1.1E-17 2.4E-22 211.2 12.2 198 475-682 108-317 (968)
7 KOG4194 Membrane glycoprotein 99.7 1.2E-18 2.6E-23 188.8 -1.6 219 474-708 186-444 (873)
8 KOG0444 Cytoskeletal regulator 99.6 4.6E-18 1E-22 185.0 -6.1 214 462-686 128-375 (1255)
9 KOG0444 Cytoskeletal regulator 99.6 3.1E-17 6.7E-22 178.6 -0.6 212 458-682 78-325 (1255)
10 KOG0472 Leucine-rich repeat pr 99.6 5.4E-17 1.2E-21 169.2 0.3 203 474-690 173-545 (565)
11 KOG4194 Membrane glycoprotein 99.6 1.1E-16 2.4E-21 173.7 0.4 237 465-713 154-426 (873)
12 PRK15387 E3 ubiquitin-protein 99.5 6.7E-14 1.4E-18 165.5 11.0 182 485-684 262-456 (788)
13 PF01582 TIR: TIR domain; Int 99.5 5.7E-15 1.2E-19 141.3 1.6 108 4-111 1-140 (141)
14 KOG0617 Ras suppressor protein 99.5 1.9E-15 4E-20 140.6 -3.4 158 481-649 29-193 (264)
15 PRK15387 E3 ubiquitin-protein 99.5 2.4E-13 5.1E-18 160.9 12.9 172 484-683 241-412 (788)
16 KOG0472 Leucine-rich repeat pr 99.5 2.2E-15 4.8E-20 157.3 -4.6 195 476-685 105-309 (565)
17 KOG0617 Ras suppressor protein 99.5 4E-15 8.7E-20 138.4 -2.6 152 511-673 34-196 (264)
18 smart00255 TIR Toll - interleu 99.4 2.1E-13 4.6E-18 130.5 7.7 113 1-114 1-138 (140)
19 PLN03210 Resistant to P. syrin 99.4 2.2E-12 4.8E-17 163.9 14.0 111 552-666 794-910 (1153)
20 PRK15370 E3 ubiquitin-protein 99.4 8.7E-13 1.9E-17 157.1 8.9 176 485-683 199-377 (754)
21 PRK15370 E3 ubiquitin-protein 99.3 2.1E-12 4.5E-17 153.9 10.4 176 485-683 220-398 (754)
22 KOG0618 Serine/threonine phosp 99.3 2.1E-13 4.5E-18 156.4 -1.5 184 485-682 241-461 (1081)
23 PRK04841 transcriptional regul 99.3 5.6E-10 1.2E-14 140.5 25.3 266 146-430 9-335 (903)
24 KOG0618 Serine/threonine phosp 99.2 7E-13 1.5E-17 152.2 -1.9 177 478-661 280-488 (1081)
25 PRK00411 cdc6 cell division co 99.1 5.9E-09 1.3E-13 118.1 21.7 225 149-384 28-307 (394)
26 KOG0532 Leucine-rich repeat (L 99.0 3E-11 6.5E-16 132.1 -3.3 167 512-689 77-250 (722)
27 PF05729 NACHT: NACHT domain 99.0 6.1E-09 1.3E-13 102.4 13.0 126 175-302 1-163 (166)
28 TIGR02928 orc1/cdc6 family rep 99.0 5.5E-08 1.2E-12 109.0 22.3 225 148-383 12-298 (365)
29 PF01637 Arch_ATPase: Archaeal 99.0 3.2E-09 7E-14 110.7 11.3 176 153-332 1-233 (234)
30 PF13676 TIR_2: TIR domain; PD 98.9 3.3E-10 7.2E-15 101.8 2.4 66 4-71 1-66 (102)
31 TIGR00635 ruvB Holliday juncti 98.9 7E-08 1.5E-12 105.3 17.4 231 151-398 4-265 (305)
32 cd00116 LRR_RI Leucine-rich re 98.8 8E-10 1.7E-14 121.3 1.9 200 480-684 46-289 (319)
33 TIGR03015 pepcterm_ATPase puta 98.8 2.2E-07 4.7E-12 99.4 20.4 158 174-337 43-242 (269)
34 KOG4237 Extracellular matrix p 98.8 2.4E-10 5.1E-15 120.2 -2.7 80 459-543 68-153 (498)
35 PRK00080 ruvB Holliday junctio 98.8 5.1E-08 1.1E-12 107.2 15.2 236 147-398 21-286 (328)
36 KOG0532 Leucine-rich repeat (L 98.8 1.6E-10 3.4E-15 126.6 -4.6 169 478-659 91-270 (722)
37 PRK06893 DNA replication initi 98.8 7.5E-08 1.6E-12 100.0 15.3 135 174-334 39-204 (229)
38 COG2256 MGS1 ATPase related to 98.8 3.9E-08 8.4E-13 104.8 13.0 153 151-328 30-207 (436)
39 KOG4237 Extracellular matrix p 98.8 7.3E-10 1.6E-14 116.5 -2.2 219 487-721 69-364 (498)
40 COG4886 Leucine-rich repeat (L 98.7 1.9E-08 4.1E-13 114.0 6.4 162 511-684 117-288 (394)
41 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.7E-13 99.9 4.0 94 512-614 21-123 (175)
42 COG2909 MalT ATP-dependent tra 98.7 1.9E-06 4.1E-11 100.1 21.7 268 146-431 14-342 (894)
43 COG3899 Predicted ATPase [Gene 98.6 1E-06 2.2E-11 107.7 18.8 275 152-429 1-388 (849)
44 KOG1259 Nischarin, modulator o 98.6 8.1E-09 1.8E-13 104.8 0.2 118 511-639 285-410 (490)
45 PF14580 LRR_9: Leucine-rich r 98.6 2E-08 4.3E-13 98.4 2.7 101 529-639 18-124 (175)
46 PRK15386 type III secretion pr 98.6 1.1E-07 2.3E-12 104.1 8.6 127 511-659 53-187 (426)
47 KOG1259 Nischarin, modulator o 98.6 8.3E-09 1.8E-13 104.8 -0.1 98 580-682 283-383 (490)
48 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.3E-13 109.4 0.5 173 457-639 120-312 (505)
49 cd00116 LRR_RI Leucine-rich re 98.6 7.4E-09 1.6E-13 113.6 -0.8 196 479-683 17-260 (319)
50 COG4886 Leucine-rich repeat (L 98.6 6.3E-08 1.4E-12 109.7 6.2 178 478-666 109-294 (394)
51 PRK13342 recombination factor 98.6 7.5E-07 1.6E-11 101.0 14.7 166 148-335 9-198 (413)
52 PTZ00112 origin recognition co 98.5 2.7E-06 5.8E-11 99.5 18.3 224 148-383 752-1030(1164)
53 KOG3207 Beta-tubulin folding c 98.5 2.9E-08 6.2E-13 106.2 1.9 168 482-659 118-311 (505)
54 PLN03150 hypothetical protein; 98.5 1.2E-07 2.6E-12 112.9 6.4 102 562-663 420-529 (623)
55 PF05496 RuvB_N: Holliday junc 98.5 1.7E-06 3.7E-11 86.7 12.5 181 147-337 20-225 (233)
56 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.2E-06 6.9E-11 87.9 14.8 158 151-336 15-204 (226)
57 PLN03150 hypothetical protein; 98.4 2.8E-07 6.1E-12 109.8 7.0 101 583-683 420-525 (623)
58 PRK08727 hypothetical protein; 98.4 6E-06 1.3E-10 86.0 15.7 152 151-330 19-201 (233)
59 PF00308 Bac_DnaA: Bacterial d 98.4 1.2E-05 2.7E-10 82.7 16.5 142 173-331 33-206 (219)
60 KOG2028 ATPase related to the 98.4 1.6E-06 3.4E-11 90.8 9.4 136 148-301 135-293 (554)
61 COG3903 Predicted ATPase [Gene 98.4 3.7E-07 8E-12 98.2 4.9 213 172-391 12-257 (414)
62 PRK04195 replication factor C 98.3 3.5E-05 7.6E-10 89.3 20.8 166 147-332 10-201 (482)
63 PRK08084 DNA replication initi 98.3 2.4E-05 5.1E-10 81.6 16.5 135 173-333 44-209 (235)
64 PRK07003 DNA polymerase III su 98.3 3.6E-05 7.8E-10 90.0 19.1 167 148-333 13-221 (830)
65 TIGR01242 26Sp45 26S proteasom 98.3 3E-06 6.6E-11 94.6 10.2 157 150-327 121-328 (364)
66 PRK05642 DNA replication initi 98.3 2E-05 4.3E-10 82.1 15.2 135 174-334 45-209 (234)
67 PRK14087 dnaA chromosomal repl 98.2 2E-05 4.4E-10 89.8 15.9 150 174-336 141-322 (450)
68 PRK12402 replication factor C 98.2 3.6E-05 7.7E-10 85.3 17.2 179 148-332 12-225 (337)
69 PF13191 AAA_16: AAA ATPase do 98.2 1.4E-06 3E-11 87.3 5.4 50 152-201 1-51 (185)
70 PTZ00202 tuzin; Provisional 98.2 2.8E-05 6.2E-10 84.8 15.4 176 115-300 218-432 (550)
71 PF13855 LRR_8: Leucine rich r 98.2 7.9E-07 1.7E-11 71.4 2.6 58 581-639 1-60 (61)
72 PRK09087 hypothetical protein; 98.2 2.8E-05 6.1E-10 80.3 14.8 125 174-333 44-195 (226)
73 PRK07471 DNA polymerase III su 98.2 1.3E-05 2.7E-10 88.7 12.7 177 147-334 15-239 (365)
74 PRK14961 DNA polymerase III su 98.2 7.3E-05 1.6E-09 83.3 18.8 165 148-331 13-218 (363)
75 PLN03025 replication factor C 98.2 1.1E-05 2.3E-10 88.4 11.8 167 147-329 9-196 (319)
76 PRK08903 DnaA regulatory inact 98.2 3.2E-05 7E-10 80.4 14.7 156 151-337 18-203 (227)
77 PRK14963 DNA polymerase III su 98.2 7.2E-05 1.6E-09 86.2 18.9 163 148-330 11-214 (504)
78 PRK14960 DNA polymerase III su 98.2 0.00015 3.2E-09 84.1 20.9 165 148-331 12-217 (702)
79 PRK13341 recombination factor 98.2 1.9E-05 4.1E-10 94.4 14.0 159 148-329 25-213 (725)
80 PRK15386 type III secretion pr 98.2 4.3E-06 9.3E-11 91.8 7.9 153 482-661 49-212 (426)
81 PRK00440 rfc replication facto 98.1 0.00014 3E-09 79.9 19.1 167 148-330 14-200 (319)
82 PRK00149 dnaA chromosomal repl 98.1 6E-05 1.3E-09 86.7 16.0 141 174-331 148-320 (450)
83 TIGR00362 DnaA chromosomal rep 98.1 0.0002 4.3E-09 81.4 19.9 141 174-331 136-308 (405)
84 PRK09376 rho transcription ter 98.1 9.4E-06 2E-10 88.2 8.5 84 175-260 170-266 (416)
85 PRK03992 proteasome-activating 98.1 2.6E-05 5.6E-10 87.6 12.2 153 151-327 131-337 (389)
86 cd00009 AAA The AAA+ (ATPases 98.1 2.4E-05 5.3E-10 74.5 10.3 54 154-209 1-54 (151)
87 PRK14088 dnaA chromosomal repl 98.1 9E-05 1.9E-09 84.5 16.4 142 174-331 130-303 (440)
88 PRK14949 DNA polymerase III su 98.0 5.6E-05 1.2E-09 90.1 14.9 169 148-332 13-219 (944)
89 PF13173 AAA_14: AAA domain 98.0 3.5E-05 7.5E-10 72.3 10.6 103 175-294 3-127 (128)
90 PRK05564 DNA polymerase III su 98.0 5.3E-05 1.1E-09 82.8 13.3 161 151-333 4-190 (313)
91 PF13401 AAA_22: AAA domain; P 98.0 1.7E-05 3.7E-10 74.6 8.1 83 174-260 4-97 (131)
92 PF13855 LRR_8: Leucine rich r 98.0 3.6E-06 7.8E-11 67.6 2.9 54 560-614 1-59 (61)
93 PRK08691 DNA polymerase III su 98.0 0.00014 3.1E-09 85.0 17.0 166 147-331 12-218 (709)
94 KOG1859 Leucine-rich repeat pr 98.0 3.7E-07 8E-12 103.0 -4.4 76 559-637 186-263 (1096)
95 PRK12323 DNA polymerase III su 98.0 6.5E-05 1.4E-09 86.7 13.3 166 148-332 13-224 (700)
96 COG1474 CDC6 Cdc6-related prot 98.0 0.00025 5.4E-09 78.4 17.5 226 148-385 14-291 (366)
97 PRK14957 DNA polymerase III su 97.9 0.00017 3.7E-09 83.4 16.0 168 148-334 13-222 (546)
98 PRK14962 DNA polymerase III su 97.9 0.00019 4.2E-09 82.1 16.2 171 147-336 10-222 (472)
99 cd01128 rho_factor Transcripti 97.9 2.2E-05 4.7E-10 82.0 7.5 85 174-260 16-113 (249)
100 PRK14956 DNA polymerase III su 97.9 0.00018 4E-09 81.0 14.9 172 147-329 14-218 (484)
101 PRK12422 chromosomal replicati 97.9 0.00023 5E-09 80.9 16.0 136 174-326 141-306 (445)
102 KOG4658 Apoptotic ATPase [Sign 97.9 6.2E-06 1.3E-10 100.7 3.4 99 559-658 544-651 (889)
103 KOG1909 Ran GTPase-activating 97.9 1.2E-06 2.5E-11 91.8 -2.6 244 436-683 8-308 (382)
104 PRK06645 DNA polymerase III su 97.9 0.00027 5.9E-09 81.2 16.3 169 147-330 17-226 (507)
105 PTZ00361 26 proteosome regulat 97.9 5.2E-05 1.1E-09 85.4 10.2 135 151-304 183-369 (438)
106 PRK07994 DNA polymerase III su 97.9 0.00019 4.1E-09 84.3 15.0 167 147-332 12-219 (647)
107 PRK06620 hypothetical protein; 97.9 0.00016 3.4E-09 74.1 12.7 118 175-329 45-185 (214)
108 PRK14086 dnaA chromosomal repl 97.9 0.00046 9.9E-09 80.0 17.4 140 175-331 315-486 (617)
109 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00023 5E-09 87.4 15.9 163 148-326 184-389 (852)
110 PRK07940 DNA polymerase III su 97.8 0.00032 6.9E-09 78.4 15.6 161 151-333 5-213 (394)
111 KOG0531 Protein phosphatase 1, 97.8 3E-06 6.4E-11 96.5 -0.6 95 511-614 96-196 (414)
112 PRK14958 DNA polymerase III su 97.8 0.00053 1.2E-08 79.3 17.6 166 147-331 12-218 (509)
113 TIGR02397 dnaX_nterm DNA polym 97.8 0.00051 1.1E-08 76.7 16.9 168 148-334 11-219 (355)
114 PRK09112 DNA polymerase III su 97.8 0.00056 1.2E-08 75.4 16.1 177 146-334 18-241 (351)
115 PRK14964 DNA polymerase III su 97.8 0.00055 1.2E-08 78.1 16.4 164 147-329 9-213 (491)
116 PRK14969 DNA polymerase III su 97.8 0.00045 9.8E-09 80.4 15.9 167 148-333 13-221 (527)
117 PF14516 AAA_35: AAA-like doma 97.8 0.0081 1.8E-07 66.0 24.7 183 146-339 6-245 (331)
118 PRK05896 DNA polymerase III su 97.8 0.00032 7E-09 81.2 14.0 169 147-334 12-222 (605)
119 PTZ00454 26S protease regulato 97.7 0.00032 6.9E-09 78.6 13.6 154 151-327 145-351 (398)
120 PRK14951 DNA polymerase III su 97.7 0.00046 1E-08 80.9 15.4 172 148-331 13-223 (618)
121 TIGR03689 pup_AAA proteasome A 97.7 0.00027 5.9E-09 80.8 13.1 140 150-302 181-378 (512)
122 PRK09111 DNA polymerase III su 97.7 0.001 2.2E-08 78.2 18.2 170 148-332 21-232 (598)
123 TIGR00767 rho transcription te 97.7 7.7E-05 1.7E-09 81.7 8.2 84 175-260 169-265 (415)
124 TIGR02639 ClpA ATP-dependent C 97.7 0.00032 6.9E-09 85.5 14.3 136 149-302 180-358 (731)
125 KOG2227 Pre-initiation complex 97.7 0.00055 1.2E-08 74.9 14.3 185 149-337 148-376 (529)
126 PF12799 LRR_4: Leucine Rich r 97.7 1.1E-05 2.3E-10 59.7 1.0 39 582-621 2-40 (44)
127 TIGR02903 spore_lon_C ATP-depe 97.7 0.00041 8.9E-09 82.3 14.7 185 147-336 150-398 (615)
128 CHL00095 clpC Clp protease ATP 97.7 0.00025 5.3E-09 87.5 13.2 135 150-301 178-353 (821)
129 PRK14952 DNA polymerase III su 97.7 0.0016 3.4E-08 76.2 18.6 169 148-335 10-222 (584)
130 PHA02544 44 clamp loader, smal 97.7 0.00039 8.5E-09 76.2 13.1 134 147-300 17-171 (316)
131 TIGR00678 holB DNA polymerase 97.7 0.0011 2.4E-08 66.6 15.3 132 175-329 15-187 (188)
132 PRK14959 DNA polymerase III su 97.7 0.00087 1.9E-08 78.1 15.7 171 148-337 13-225 (624)
133 PRK07764 DNA polymerase III su 97.6 0.0015 3.2E-08 79.5 18.0 163 148-329 12-217 (824)
134 PRK14955 DNA polymerase III su 97.6 0.0012 2.6E-08 74.6 16.3 168 148-330 13-225 (397)
135 PRK10865 protein disaggregatio 97.6 0.00065 1.4E-08 83.8 15.2 138 149-302 176-354 (857)
136 KOG4579 Leucine-rich repeat (L 97.6 4.9E-06 1.1E-10 75.8 -2.5 87 556-645 49-139 (177)
137 KOG0531 Protein phosphatase 1, 97.6 2.8E-05 6E-10 88.6 3.0 105 481-596 91-201 (414)
138 PRK14970 DNA polymerase III su 97.6 0.00088 1.9E-08 75.0 14.8 165 147-329 13-205 (367)
139 PRK08116 hypothetical protein; 97.6 0.00036 7.9E-09 74.1 10.4 74 175-260 115-188 (268)
140 PRK14954 DNA polymerase III su 97.6 0.0025 5.5E-08 75.0 18.2 174 148-328 13-223 (620)
141 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0012 2.5E-08 81.9 15.6 136 149-302 171-349 (852)
142 COG2255 RuvB Holliday junction 97.5 0.00073 1.6E-08 69.5 11.2 180 147-337 22-227 (332)
143 PRK14953 DNA polymerase III su 97.5 0.002 4.4E-08 74.1 15.9 167 148-333 13-220 (486)
144 PRK07133 DNA polymerase III su 97.5 0.0011 2.4E-08 78.5 13.5 170 147-333 14-220 (725)
145 PRK06305 DNA polymerase III su 97.5 0.0035 7.6E-08 71.7 17.1 169 148-333 14-223 (451)
146 COG0593 DnaA ATPase involved i 97.4 0.00081 1.8E-08 74.3 11.3 118 173-304 112-259 (408)
147 PRK08451 DNA polymerase III su 97.4 0.0042 9.2E-08 71.6 17.5 167 148-333 11-218 (535)
148 CHL00176 ftsH cell division pr 97.4 0.0013 2.7E-08 78.0 13.6 156 150-325 182-386 (638)
149 PF05621 TniB: Bacterial TniB 97.4 0.0032 6.9E-08 66.5 14.9 177 151-331 34-259 (302)
150 PRK14950 DNA polymerase III su 97.4 0.0035 7.6E-08 74.3 17.2 175 148-333 13-221 (585)
151 PRK08181 transposase; Validate 97.4 0.0005 1.1E-08 72.7 8.4 71 175-260 107-177 (269)
152 PRK11034 clpA ATP-dependent Cl 97.4 0.0013 2.8E-08 79.4 12.9 48 150-199 185-232 (758)
153 PF05673 DUF815: Protein of un 97.4 0.0047 1E-07 63.2 14.7 54 148-201 24-79 (249)
154 TIGR01241 FtsH_fam ATP-depende 97.4 0.0016 3.5E-08 75.9 13.2 158 150-327 54-260 (495)
155 TIGR02881 spore_V_K stage V sp 97.4 0.0016 3.6E-08 69.1 12.2 26 173-198 41-66 (261)
156 PRK14948 DNA polymerase III su 97.4 0.0041 8.9E-08 73.7 16.4 175 148-333 13-222 (620)
157 PF01695 IstB_IS21: IstB-like 97.3 0.0007 1.5E-08 67.2 8.4 71 175-260 48-118 (178)
158 PF12799 LRR_4: Leucine Rich r 97.3 0.00018 3.8E-09 53.3 2.8 41 604-646 1-41 (44)
159 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0066 1.4E-07 69.7 16.9 135 151-304 228-407 (489)
160 KOG2543 Origin recognition com 97.3 0.0036 7.8E-08 67.1 13.5 145 150-301 5-192 (438)
161 PRK07952 DNA replication prote 97.3 0.0015 3.3E-08 68.0 10.7 74 174-260 99-172 (244)
162 KOG1859 Leucine-rich repeat pr 97.3 2.3E-05 4.9E-10 89.1 -3.1 99 582-685 165-266 (1096)
163 PRK09183 transposase/IS protei 97.3 0.00073 1.6E-08 71.4 8.3 25 175-199 103-127 (259)
164 COG1222 RPT1 ATP-dependent 26S 97.3 0.0019 4E-08 68.7 11.0 178 152-353 152-393 (406)
165 PRK14971 DNA polymerase III su 97.3 0.021 4.7E-07 67.7 21.2 163 148-330 14-219 (614)
166 PF00004 AAA: ATPase family as 97.3 0.0014 3E-08 61.4 9.3 24 177-200 1-24 (132)
167 KOG2120 SCF ubiquitin ligase, 97.2 2.5E-05 5.4E-10 80.1 -3.1 149 527-683 207-373 (419)
168 KOG1644 U2-associated snRNP A' 97.2 0.00043 9.2E-09 67.7 5.2 99 529-637 41-149 (233)
169 PRK12377 putative replication 97.2 0.0017 3.6E-08 67.9 10.0 73 174-260 101-173 (248)
170 PRK06647 DNA polymerase III su 97.2 0.021 4.5E-07 67.1 20.1 168 147-331 12-218 (563)
171 PRK11331 5-methylcytosine-spec 97.2 0.00056 1.2E-08 76.3 6.4 100 151-260 175-282 (459)
172 PRK05707 DNA polymerase III su 97.2 0.0078 1.7E-07 65.8 14.9 141 174-333 22-203 (328)
173 TIGR02880 cbbX_cfxQ probable R 97.1 0.0037 8E-08 67.1 11.7 24 176-199 60-83 (284)
174 PRK06526 transposase; Provisio 97.1 0.00086 1.9E-08 70.5 6.7 27 174-200 98-124 (254)
175 KOG2982 Uncharacterized conser 97.1 0.00025 5.3E-09 73.0 2.5 162 479-645 91-266 (418)
176 PRK07399 DNA polymerase III su 97.1 0.028 6.2E-07 61.1 18.6 173 151-333 4-221 (314)
177 PRK05563 DNA polymerase III su 97.1 0.012 2.6E-07 69.2 16.6 171 147-329 12-216 (559)
178 PRK06921 hypothetical protein; 97.1 0.0011 2.4E-08 70.2 7.1 36 174-209 117-153 (266)
179 COG0466 Lon ATP-dependent Lon 97.1 0.0038 8.3E-08 72.1 11.5 141 151-303 323-509 (782)
180 cd01133 F1-ATPase_beta F1 ATP 97.1 0.002 4.4E-08 67.6 8.7 83 175-259 70-172 (274)
181 PRK14965 DNA polymerase III su 97.1 0.0063 1.4E-07 71.8 13.8 169 148-333 13-221 (576)
182 CHL00181 cbbX CbbX; Provisiona 97.1 0.0094 2E-07 64.0 14.0 23 176-198 61-83 (287)
183 KOG1909 Ran GTPase-activating 97.0 5.7E-05 1.2E-09 79.4 -2.9 127 510-639 157-309 (382)
184 KOG4579 Leucine-rich repeat (L 97.0 4.9E-05 1.1E-09 69.4 -3.0 84 531-623 54-141 (177)
185 PRK08118 topology modulation p 97.0 0.00047 1E-08 67.7 3.4 33 176-208 3-38 (167)
186 PRK06835 DNA replication prote 97.0 0.0021 4.5E-08 70.1 8.6 35 175-209 184-218 (329)
187 KOG0991 Replication factor C, 97.0 0.0071 1.5E-07 60.4 11.0 97 148-260 24-123 (333)
188 TIGR01243 CDC48 AAA family ATP 97.0 0.0067 1.5E-07 74.2 13.4 154 151-327 453-657 (733)
189 TIGR01243 CDC48 AAA family ATP 96.9 0.011 2.5E-07 72.3 15.1 51 151-201 178-239 (733)
190 KOG0735 AAA+-type ATPase [Post 96.9 0.012 2.5E-07 67.8 13.5 145 174-334 431-617 (952)
191 KOG3678 SARM protein (with ste 96.9 0.00099 2.1E-08 72.0 4.9 63 2-66 613-676 (832)
192 smart00382 AAA ATPases associa 96.9 0.0025 5.4E-08 59.9 7.3 35 175-209 3-37 (148)
193 PRK10787 DNA-binding ATP-depen 96.9 0.0059 1.3E-07 74.4 11.5 52 151-202 322-377 (784)
194 PLN00020 ribulose bisphosphate 96.8 0.014 3E-07 63.2 12.8 31 172-202 146-176 (413)
195 TIGR02639 ClpA ATP-dependent C 96.8 0.013 2.8E-07 71.6 14.2 49 151-199 454-509 (731)
196 PRK07261 topology modulation p 96.8 0.004 8.6E-08 61.5 7.9 23 176-198 2-24 (171)
197 KOG2982 Uncharacterized conser 96.8 0.00065 1.4E-08 70.0 2.1 77 510-593 71-158 (418)
198 KOG3665 ZYG-1-like serine/thre 96.8 0.00053 1.2E-08 81.9 1.6 77 559-637 147-229 (699)
199 TIGR00602 rad24 checkpoint pro 96.8 0.0067 1.5E-07 71.5 10.6 53 147-199 80-135 (637)
200 PF00158 Sigma54_activat: Sigm 96.7 0.0029 6.2E-08 62.2 6.2 45 153-197 1-45 (168)
201 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0047 1E-07 69.7 8.3 52 151-202 190-251 (802)
202 PF04665 Pox_A32: Poxvirus A32 96.7 0.005 1.1E-07 63.5 7.9 34 176-209 15-48 (241)
203 KOG0741 AAA+-type ATPase [Post 96.7 0.013 2.9E-07 65.0 11.3 113 172-301 536-685 (744)
204 PRK12608 transcription termina 96.7 0.0079 1.7E-07 65.8 9.5 97 161-260 121-230 (380)
205 PF13207 AAA_17: AAA domain; P 96.6 0.0016 3.4E-08 60.2 3.5 23 176-198 1-23 (121)
206 TIGR00763 lon ATP-dependent pr 96.6 0.026 5.7E-07 69.4 15.0 52 151-202 320-375 (775)
207 COG3267 ExeA Type II secretory 96.6 0.046 1E-06 56.0 14.0 158 172-335 49-247 (269)
208 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0013 2.9E-08 71.4 3.3 50 150-199 50-103 (361)
209 KOG1644 U2-associated snRNP A' 96.6 0.0019 4.1E-08 63.3 3.9 98 510-614 42-150 (233)
210 KOG2228 Origin recognition com 96.6 0.012 2.6E-07 62.1 9.9 152 149-301 22-218 (408)
211 COG2607 Predicted ATPase (AAA+ 96.6 0.014 3.1E-07 58.8 10.0 56 149-204 58-115 (287)
212 TIGR02640 gas_vesic_GvpN gas v 96.6 0.02 4.4E-07 60.7 11.9 26 176-201 23-48 (262)
213 COG1223 Predicted ATPase (AAA+ 96.6 0.012 2.7E-07 59.7 9.3 157 150-326 120-318 (368)
214 PRK08939 primosomal protein Dn 96.6 0.0096 2.1E-07 64.4 9.4 72 174-260 156-227 (306)
215 KOG0744 AAA+-type ATPase [Post 96.5 0.011 2.5E-07 61.8 9.2 36 174-209 177-216 (423)
216 PF08937 DUF1863: MTH538 TIR-l 96.5 0.00082 1.8E-08 63.1 0.8 75 2-77 1-93 (130)
217 PRK13531 regulatory ATPase Rav 96.5 0.019 4E-07 65.0 11.5 46 151-200 20-65 (498)
218 PHA00729 NTP-binding motif con 96.5 0.01 2.3E-07 60.4 8.7 27 173-199 16-42 (226)
219 PRK10865 protein disaggregatio 96.5 0.021 4.6E-07 70.6 13.1 50 151-200 568-624 (857)
220 PRK10536 hypothetical protein; 96.5 0.03 6.4E-07 58.2 11.7 52 151-206 55-108 (262)
221 KOG2739 Leucine-rich acidic nu 96.4 0.0016 3.4E-08 66.5 2.3 78 559-639 42-127 (260)
222 KOG0989 Replication factor C, 96.4 0.016 3.4E-07 60.6 9.4 173 147-332 32-230 (346)
223 COG1373 Predicted ATPase (AAA+ 96.4 0.052 1.1E-06 61.1 14.4 146 159-332 25-191 (398)
224 PRK06696 uridine kinase; Valid 96.4 0.0036 7.9E-08 64.7 4.6 46 156-201 3-49 (223)
225 KOG2004 Mitochondrial ATP-depe 96.3 0.01 2.2E-07 68.3 8.1 52 151-202 411-466 (906)
226 PRK07667 uridine kinase; Provi 96.3 0.0069 1.5E-07 61.1 6.3 42 160-201 3-44 (193)
227 COG1618 Predicted nucleotide k 96.3 0.0038 8.1E-08 59.0 3.8 36 174-209 5-41 (179)
228 KOG0730 AAA+-type ATPase [Post 96.3 0.018 3.8E-07 66.1 9.8 52 152-203 435-497 (693)
229 PRK08769 DNA polymerase III su 96.3 0.11 2.4E-06 56.4 15.4 78 249-334 112-209 (319)
230 KOG0731 AAA+-type ATPase conta 96.3 0.082 1.8E-06 62.7 15.1 159 150-330 310-521 (774)
231 KOG2120 SCF ubiquitin ligase, 96.2 0.00017 3.7E-09 74.1 -6.1 128 582-714 211-349 (419)
232 PRK09361 radB DNA repair and r 96.2 0.021 4.6E-07 59.1 9.2 49 161-209 10-58 (225)
233 COG1484 DnaC DNA replication p 96.2 0.014 3E-07 61.4 7.7 74 173-260 104-177 (254)
234 COG0470 HolB ATPase involved i 96.1 0.032 7E-07 61.2 10.7 49 152-200 2-50 (325)
235 PF07693 KAP_NTPase: KAP famil 96.1 0.2 4.4E-06 55.0 16.9 44 158-201 3-47 (325)
236 PF08357 SEFIR: SEFIR domain; 96.1 0.0056 1.2E-07 59.0 4.0 64 3-66 2-70 (150)
237 COG0542 clpA ATP-binding subun 96.0 0.023 5E-07 67.6 9.4 101 151-260 491-603 (786)
238 KOG2739 Leucine-rich acidic nu 96.0 0.0042 9E-08 63.5 2.8 99 579-679 41-149 (260)
239 KOG3665 ZYG-1-like serine/thre 96.0 0.0031 6.7E-08 75.5 2.1 108 480-594 143-263 (699)
240 PRK06090 DNA polymerase III su 96.0 0.24 5.2E-06 53.8 16.5 75 249-333 107-201 (319)
241 KOG0728 26S proteasome regulat 96.0 0.22 4.7E-06 50.5 14.5 46 152-197 147-204 (404)
242 TIGR01817 nifA Nif-specific re 96.0 0.084 1.8E-06 62.3 14.1 50 149-198 194-243 (534)
243 cd01131 PilT Pilus retraction 96.0 0.021 4.6E-07 57.8 7.8 97 175-275 2-112 (198)
244 PRK08058 DNA polymerase III su 96.0 0.11 2.4E-06 57.1 14.0 133 153-301 7-181 (329)
245 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.034 7.3E-07 58.0 9.3 47 163-209 8-60 (235)
246 PF13177 DNA_pol3_delta2: DNA 95.9 0.12 2.5E-06 50.6 12.4 43 155-198 1-43 (162)
247 PRK00771 signal recognition pa 95.9 0.14 2.9E-06 58.2 14.4 29 173-201 94-122 (437)
248 cd01393 recA_like RecA is a b 95.8 0.049 1.1E-06 56.4 10.0 49 161-209 6-60 (226)
249 KOG2123 Uncharacterized conser 95.8 0.00075 1.6E-08 68.9 -3.4 94 559-655 18-123 (388)
250 TIGR03346 chaperone_ClpB ATP-d 95.8 0.025 5.4E-07 70.3 9.1 50 151-200 565-621 (852)
251 TIGR02237 recomb_radB DNA repa 95.8 0.032 7E-07 57.0 8.4 38 172-209 10-47 (209)
252 KOG0733 Nuclear AAA ATPase (VC 95.8 0.042 9.2E-07 62.4 9.6 112 175-303 546-693 (802)
253 PRK15455 PrkA family serine pr 95.8 0.0076 1.7E-07 68.9 3.9 50 151-200 76-129 (644)
254 TIGR00064 ftsY signal recognit 95.8 0.036 7.9E-07 59.0 8.8 37 172-208 70-106 (272)
255 PF13238 AAA_18: AAA domain; P 95.8 0.0078 1.7E-07 56.0 3.3 22 177-198 1-22 (129)
256 PF00485 PRK: Phosphoribulokin 95.7 0.0086 1.9E-07 60.5 3.8 26 176-201 1-26 (194)
257 TIGR02902 spore_lonB ATP-depen 95.7 0.079 1.7E-06 62.1 12.2 47 149-197 63-109 (531)
258 PRK05541 adenylylsulfate kinas 95.7 0.011 2.4E-07 58.6 4.4 36 174-209 7-42 (176)
259 KOG1969 DNA replication checkp 95.7 0.024 5.1E-07 65.7 7.3 72 172-260 324-397 (877)
260 PRK11034 clpA ATP-dependent Cl 95.7 0.039 8.4E-07 66.9 9.6 49 151-199 458-513 (758)
261 PRK06871 DNA polymerase III su 95.7 0.31 6.7E-06 53.1 15.6 75 249-330 106-200 (325)
262 PRK12724 flagellar biosynthesi 95.6 0.093 2E-06 58.5 11.5 25 174-198 223-247 (432)
263 PRK06964 DNA polymerase III su 95.6 0.78 1.7E-05 50.4 18.5 76 249-334 131-226 (342)
264 COG0542 clpA ATP-binding subun 95.6 0.23 5E-06 59.4 15.3 49 150-200 169-217 (786)
265 cd01394 radB RadB. The archaea 95.6 0.039 8.4E-07 56.9 8.1 49 161-209 6-54 (218)
266 TIGR00959 ffh signal recogniti 95.6 0.17 3.6E-06 57.3 13.6 27 173-199 98-124 (428)
267 KOG1514 Origin recognition com 95.6 0.21 4.6E-06 58.0 14.3 179 149-333 394-621 (767)
268 KOG0727 26S proteasome regulat 95.6 0.12 2.6E-06 52.4 10.8 51 152-202 156-217 (408)
269 CHL00095 clpC Clp protease ATP 95.6 0.039 8.5E-07 68.3 9.2 102 151-260 509-621 (821)
270 TIGR02974 phageshock_pspF psp 95.5 0.13 2.9E-06 56.3 12.3 45 153-197 1-45 (329)
271 PF00448 SRP54: SRP54-type pro 95.5 0.047 1E-06 55.0 8.0 55 175-232 2-56 (196)
272 PRK10733 hflB ATP-dependent me 95.5 0.11 2.5E-06 62.3 12.5 51 152-202 153-213 (644)
273 PF07726 AAA_3: ATPase family 95.5 0.009 2E-07 54.9 2.4 28 177-204 2-29 (131)
274 TIGR03345 VI_ClpV1 type VI sec 95.5 0.037 8.1E-07 68.3 8.5 50 151-200 566-622 (852)
275 COG0464 SpoVK ATPases of the A 95.4 0.04 8.6E-07 64.4 8.3 135 151-304 242-425 (494)
276 TIGR01650 PD_CobS cobaltochela 95.4 0.18 3.8E-06 54.6 12.3 52 147-202 41-92 (327)
277 TIGR01425 SRP54_euk signal rec 95.4 0.072 1.6E-06 59.9 9.6 29 173-201 99-127 (429)
278 PRK10867 signal recognition pa 95.4 0.25 5.5E-06 55.9 14.0 29 173-201 99-127 (433)
279 KOG0651 26S proteasome regulat 95.4 0.039 8.5E-07 57.7 6.8 30 173-202 165-194 (388)
280 PRK03839 putative kinase; Prov 95.3 0.013 2.8E-07 58.4 3.3 24 176-199 2-25 (180)
281 PRK14974 cell division protein 95.3 0.23 4.9E-06 54.4 13.0 28 173-200 139-166 (336)
282 PF01583 APS_kinase: Adenylyls 95.3 0.02 4.4E-07 55.0 4.3 35 175-209 3-37 (156)
283 PF10236 DAP3: Mitochondrial r 95.3 0.3 6.5E-06 53.1 13.9 48 283-330 258-306 (309)
284 PTZ00301 uridine kinase; Provi 95.3 0.014 3.1E-07 59.5 3.4 29 174-202 3-31 (210)
285 PF02562 PhoH: PhoH-like prote 95.3 0.069 1.5E-06 53.9 8.2 39 173-211 18-58 (205)
286 PRK11608 pspF phage shock prot 95.3 0.045 9.7E-07 60.1 7.5 47 151-197 6-52 (326)
287 PRK08233 hypothetical protein; 95.2 0.015 3.2E-07 58.0 3.3 26 174-199 3-28 (182)
288 cd00561 CobA_CobO_BtuR ATP:cor 95.2 0.21 4.5E-06 48.3 10.9 97 175-273 3-139 (159)
289 PRK05480 uridine/cytidine kina 95.2 0.017 3.6E-07 59.2 3.7 27 172-198 4-30 (209)
290 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.11 2.4E-06 49.7 9.1 33 175-208 27-59 (144)
291 cd01121 Sms Sms (bacterial rad 95.2 0.084 1.8E-06 58.7 9.4 50 160-209 68-117 (372)
292 COG4608 AppF ABC-type oligopep 95.2 0.11 2.3E-06 54.2 9.4 103 174-278 39-176 (268)
293 PRK04296 thymidine kinase; Pro 95.2 0.026 5.7E-07 56.7 5.0 34 175-208 3-36 (190)
294 PRK15429 formate hydrogenlyase 95.2 0.061 1.3E-06 65.4 9.0 49 150-198 375-423 (686)
295 PRK00625 shikimate kinase; Pro 95.2 0.015 3.3E-07 57.3 3.2 24 176-199 2-25 (173)
296 PRK07993 DNA polymerase III su 95.1 0.28 6E-06 53.9 13.1 76 249-331 107-202 (334)
297 COG0572 Udk Uridine kinase [Nu 95.1 0.024 5.1E-07 57.2 4.4 30 172-201 6-35 (218)
298 cd02019 NK Nucleoside/nucleoti 95.1 0.017 3.6E-07 47.5 2.7 23 176-198 1-23 (69)
299 PRK06762 hypothetical protein; 95.1 0.018 3.9E-07 56.5 3.4 24 175-198 3-26 (166)
300 PF08423 Rad51: Rad51; InterP 95.0 0.096 2.1E-06 55.3 8.9 60 161-224 25-90 (256)
301 PRK04040 adenylate kinase; Pro 95.0 0.023 5E-07 56.9 4.0 25 175-199 3-27 (188)
302 cd03214 ABC_Iron-Siderophores_ 95.0 0.28 6.1E-06 48.8 11.7 108 175-286 26-171 (180)
303 KOG2035 Replication factor C, 95.0 0.97 2.1E-05 46.9 15.3 209 151-371 13-282 (351)
304 PRK09270 nucleoside triphospha 95.0 0.028 6.1E-07 58.4 4.7 31 171-201 30-60 (229)
305 PF00560 LRR_1: Leucine Rich R 95.0 0.007 1.5E-07 37.4 0.1 18 606-624 2-19 (22)
306 PF13671 AAA_33: AAA domain; P 95.0 0.021 4.6E-07 54.2 3.5 24 176-199 1-24 (143)
307 TIGR00235 udk uridine kinase. 94.9 0.025 5.4E-07 57.8 4.1 28 172-199 4-31 (207)
308 PRK04132 replication factor C 94.9 0.29 6.4E-06 59.7 13.6 135 182-332 574-730 (846)
309 PRK00131 aroK shikimate kinase 94.9 0.021 4.6E-07 56.3 3.4 26 174-199 4-29 (175)
310 cd03238 ABC_UvrA The excision 94.9 0.26 5.7E-06 48.7 11.0 22 175-196 22-43 (176)
311 PRK11889 flhF flagellar biosyn 94.8 0.097 2.1E-06 57.7 8.4 29 173-201 240-268 (436)
312 KOG3928 Mitochondrial ribosome 94.8 0.24 5.3E-06 54.0 11.2 31 172-202 177-208 (461)
313 PF10443 RNA12: RNA12 protein; 94.8 1.2 2.6E-05 49.6 16.9 89 250-338 148-283 (431)
314 PF00910 RNA_helicase: RNA hel 94.8 0.016 3.4E-07 52.4 1.9 26 177-202 1-26 (107)
315 PRK13947 shikimate kinase; Pro 94.8 0.022 4.8E-07 56.1 3.1 26 176-201 3-28 (171)
316 cd03222 ABC_RNaseL_inhibitor T 94.7 0.22 4.8E-06 49.3 10.1 98 175-287 26-146 (177)
317 TIGR01360 aden_kin_iso1 adenyl 94.7 0.025 5.4E-07 56.6 3.4 26 173-198 2-27 (188)
318 PRK08699 DNA polymerase III su 94.7 0.6 1.3E-05 51.1 14.3 59 261-329 142-202 (325)
319 COG0563 Adk Adenylate kinase a 94.7 0.051 1.1E-06 53.8 5.5 78 176-259 2-86 (178)
320 PRK05022 anaerobic nitric oxid 94.7 0.082 1.8E-06 61.9 8.1 50 149-198 185-234 (509)
321 PRK06547 hypothetical protein; 94.7 0.03 6.6E-07 55.2 3.8 27 172-198 13-39 (172)
322 PF07728 AAA_5: AAA domain (dy 94.7 0.027 5.8E-07 53.4 3.3 22 177-198 2-23 (139)
323 KOG0743 AAA+-type ATPase [Post 94.7 0.34 7.4E-06 53.8 12.0 149 175-337 236-413 (457)
324 PF08433 KTI12: Chromatin asso 94.6 0.082 1.8E-06 56.1 7.0 26 175-200 2-27 (270)
325 KOG0652 26S proteasome regulat 94.5 0.43 9.3E-06 48.7 11.3 52 151-202 171-233 (424)
326 KOG0734 AAA+-type ATPase conta 94.5 0.29 6.2E-06 55.0 10.9 48 151-198 304-361 (752)
327 COG1136 SalX ABC-type antimicr 94.5 0.32 6.9E-06 49.7 10.6 46 240-287 150-216 (226)
328 KOG0729 26S proteasome regulat 94.4 0.096 2.1E-06 53.4 6.5 53 154-211 180-243 (435)
329 cd03115 SRP The signal recogni 94.4 0.15 3.3E-06 50.3 8.1 26 176-201 2-27 (173)
330 cd03237 ABC_RNaseL_inhibitor_d 94.4 0.36 7.9E-06 50.6 11.3 24 175-198 26-49 (246)
331 PRK10416 signal recognition pa 94.4 0.14 3E-06 55.8 8.3 29 173-201 113-141 (318)
332 cd03216 ABC_Carb_Monos_I This 94.4 0.19 4.1E-06 49.1 8.6 105 175-286 27-155 (163)
333 cd02028 UMPK_like Uridine mono 94.3 0.043 9.2E-07 54.6 4.0 25 176-200 1-25 (179)
334 KOG0739 AAA+-type ATPase [Post 94.3 0.28 6.1E-06 51.1 9.8 50 151-200 133-192 (439)
335 COG2812 DnaX DNA polymerase II 94.3 0.18 3.9E-06 57.8 9.4 169 148-327 13-214 (515)
336 cd00983 recA RecA is a bacter 94.3 0.19 4.2E-06 54.4 9.2 49 161-209 41-90 (325)
337 TIGR00150 HI0065_YjeE ATPase, 94.3 0.047 1E-06 51.0 3.9 25 174-198 22-46 (133)
338 TIGR01359 UMP_CMP_kin_fam UMP- 94.3 0.029 6.3E-07 56.0 2.6 23 176-198 1-23 (183)
339 KOG0726 26S proteasome regulat 94.2 0.17 3.6E-06 52.5 8.0 53 151-203 185-248 (440)
340 cd00227 CPT Chloramphenicol (C 94.2 0.037 8.1E-07 54.8 3.3 25 175-199 3-27 (175)
341 PF13604 AAA_30: AAA domain; P 94.2 0.2 4.3E-06 50.6 8.7 38 161-201 8-45 (196)
342 cd03247 ABCC_cytochrome_bd The 94.2 0.39 8.4E-06 47.7 10.7 103 175-287 29-170 (178)
343 COG4618 ArpD ABC-type protease 94.2 0.33 7.2E-06 54.5 10.7 22 175-196 363-384 (580)
344 COG1428 Deoxynucleoside kinase 94.2 0.037 8E-07 55.2 3.1 26 174-199 4-29 (216)
345 TIGR03574 selen_PSTK L-seryl-t 94.2 0.12 2.6E-06 54.5 7.3 24 177-200 2-25 (249)
346 PF00560 LRR_1: Leucine Rich R 94.1 0.019 4.2E-07 35.4 0.7 21 582-602 1-21 (22)
347 cd03230 ABC_DR_subfamily_A Thi 94.1 0.36 7.8E-06 47.6 10.2 104 174-286 26-168 (173)
348 PRK13949 shikimate kinase; Pro 94.1 0.037 8E-07 54.5 3.1 24 176-199 3-26 (169)
349 PF03205 MobB: Molybdopterin g 94.1 0.068 1.5E-06 50.7 4.7 35 175-209 1-36 (140)
350 PRK10923 glnG nitrogen regulat 94.1 0.51 1.1E-05 54.8 13.0 47 151-197 138-184 (469)
351 cd03246 ABCC_Protease_Secretio 94.1 0.31 6.6E-06 48.2 9.6 107 175-287 29-169 (173)
352 COG4088 Predicted nucleotide k 94.1 0.068 1.5E-06 52.7 4.6 27 175-201 2-28 (261)
353 PRK14722 flhF flagellar biosyn 94.1 0.16 3.6E-06 56.1 8.2 36 174-209 137-174 (374)
354 cd02024 NRK1 Nicotinamide ribo 94.1 0.033 7.3E-07 55.5 2.6 23 176-198 1-23 (187)
355 cd00464 SK Shikimate kinase (S 94.0 0.041 8.9E-07 53.0 3.2 23 177-199 2-24 (154)
356 PRK06217 hypothetical protein; 94.0 0.043 9.3E-07 54.8 3.4 24 176-199 3-26 (183)
357 cd02023 UMPK Uridine monophosp 94.0 0.033 7.2E-07 56.4 2.5 23 176-198 1-23 (198)
358 PRK13543 cytochrome c biogenes 94.0 0.56 1.2E-05 48.0 11.7 23 175-197 38-60 (214)
359 cd00267 ABC_ATPase ABC (ATP-bi 94.0 0.16 3.5E-06 49.2 7.2 105 175-287 26-154 (157)
360 cd02025 PanK Pantothenate kina 94.0 0.035 7.6E-07 57.2 2.6 24 176-199 1-24 (220)
361 cd02020 CMPK Cytidine monophos 94.0 0.04 8.6E-07 52.6 2.8 24 176-199 1-24 (147)
362 cd03223 ABCD_peroxisomal_ALDP 93.9 0.39 8.4E-06 47.1 9.9 106 175-286 28-160 (166)
363 PRK09280 F0F1 ATP synthase sub 93.9 0.22 4.7E-06 56.5 8.9 84 175-260 145-248 (463)
364 TIGR02238 recomb_DMC1 meiotic 93.9 0.27 5.8E-06 53.5 9.4 61 161-225 83-149 (313)
365 PRK09354 recA recombinase A; P 93.9 0.22 4.7E-06 54.5 8.7 49 161-209 46-95 (349)
366 TIGR00390 hslU ATP-dependent p 93.9 0.12 2.6E-06 57.5 6.7 51 152-202 13-75 (441)
367 PRK13948 shikimate kinase; Pro 93.9 0.048 1E-06 54.2 3.3 28 173-200 9-36 (182)
368 PRK05439 pantothenate kinase; 93.9 0.15 3.2E-06 55.0 7.2 30 171-200 83-112 (311)
369 PRK00889 adenylylsulfate kinas 93.9 0.071 1.5E-06 52.8 4.5 27 174-200 4-30 (175)
370 TIGR01420 pilT_fam pilus retra 93.8 0.19 4.2E-06 55.5 8.4 82 174-260 122-205 (343)
371 PRK05703 flhF flagellar biosyn 93.8 0.2 4.4E-06 56.9 8.6 36 174-209 221-258 (424)
372 PRK13946 shikimate kinase; Pro 93.8 0.045 9.7E-07 54.7 3.1 26 175-200 11-36 (184)
373 PRK13765 ATP-dependent proteas 93.8 0.035 7.5E-07 65.8 2.6 60 147-210 27-87 (637)
374 PRK12678 transcription termina 93.8 0.14 3.1E-06 58.7 7.1 84 175-260 417-513 (672)
375 PF00006 ATP-synt_ab: ATP synt 93.8 0.18 3.8E-06 51.6 7.2 80 175-259 16-114 (215)
376 COG1066 Sms Predicted ATP-depe 93.8 0.34 7.3E-06 53.1 9.6 93 160-260 79-178 (456)
377 COG0703 AroK Shikimate kinase 93.7 0.052 1.1E-06 52.7 3.1 28 175-202 3-30 (172)
378 COG0003 ArsA Predicted ATPase 93.7 0.095 2E-06 56.8 5.4 36 174-209 2-37 (322)
379 PRK03846 adenylylsulfate kinas 93.7 0.083 1.8E-06 53.5 4.8 37 172-208 22-58 (198)
380 TIGR01069 mutS2 MutS2 family p 93.7 0.25 5.4E-06 60.4 9.5 165 173-353 321-521 (771)
381 KOG2123 Uncharacterized conser 93.7 0.0099 2.1E-07 61.0 -2.0 76 558-634 39-123 (388)
382 COG5635 Predicted NTPase (NACH 93.7 0.53 1.2E-05 58.5 12.6 178 176-353 224-448 (824)
383 TIGR02322 phosphon_PhnN phosph 93.6 0.051 1.1E-06 54.0 3.0 25 175-199 2-26 (179)
384 PF03308 ArgK: ArgK protein; 93.6 0.17 3.7E-06 52.4 6.8 42 160-201 15-56 (266)
385 PF07725 LRR_3: Leucine Rich R 93.6 0.041 8.8E-07 32.8 1.3 20 531-550 1-20 (20)
386 PRK10751 molybdopterin-guanine 93.6 0.072 1.6E-06 52.2 3.9 28 173-200 5-32 (173)
387 PLN03187 meiotic recombination 93.6 0.35 7.7E-06 53.0 9.7 61 161-225 113-179 (344)
388 PRK11823 DNA repair protein Ra 93.5 0.3 6.6E-06 55.9 9.5 50 160-209 66-115 (446)
389 cd00071 GMPK Guanosine monopho 93.5 0.049 1.1E-06 51.6 2.6 25 177-201 2-26 (137)
390 cd01132 F1_ATPase_alpha F1 ATP 93.5 0.26 5.7E-06 51.9 8.1 81 175-259 70-170 (274)
391 PRK05057 aroK shikimate kinase 93.5 0.06 1.3E-06 53.2 3.2 25 175-199 5-29 (172)
392 cd02021 GntK Gluconate kinase 93.5 0.049 1.1E-06 52.3 2.6 23 176-198 1-23 (150)
393 COG0465 HflB ATP-dependent Zn 93.5 0.35 7.6E-06 56.3 9.8 52 149-200 148-209 (596)
394 PRK12597 F0F1 ATP synthase sub 93.5 0.27 5.9E-06 55.9 8.8 83 175-260 144-247 (461)
395 PRK15115 response regulator Gl 93.4 0.96 2.1E-05 52.1 13.6 48 151-198 134-181 (444)
396 cd03283 ABC_MutS-like MutS-lik 93.4 0.37 8E-06 48.8 8.9 23 175-197 26-48 (199)
397 PF14532 Sigma54_activ_2: Sigm 93.4 0.031 6.6E-07 53.0 1.0 45 154-198 1-45 (138)
398 PF03266 NTPase_1: NTPase; In 93.4 0.076 1.6E-06 52.1 3.8 32 177-208 2-34 (168)
399 TIGR03499 FlhF flagellar biosy 93.4 0.28 6.2E-06 52.6 8.4 28 173-200 193-220 (282)
400 PRK13975 thymidylate kinase; P 93.4 0.069 1.5E-06 53.9 3.5 26 175-200 3-28 (196)
401 COG1936 Predicted nucleotide k 93.4 0.051 1.1E-06 52.3 2.3 20 176-195 2-21 (180)
402 PRK14530 adenylate kinase; Pro 93.4 0.061 1.3E-06 55.3 3.2 23 176-198 5-27 (215)
403 PRK12727 flagellar biosynthesi 93.4 0.26 5.7E-06 56.5 8.4 29 173-201 349-377 (559)
404 TIGR01039 atpD ATP synthase, F 93.3 0.3 6.6E-06 55.1 8.8 84 175-260 144-247 (461)
405 PRK05201 hslU ATP-dependent pr 93.3 0.083 1.8E-06 58.7 4.3 51 152-202 16-78 (443)
406 COG0468 RecA RecA/RadA recombi 93.3 0.5 1.1E-05 50.1 9.9 47 163-209 49-95 (279)
407 TIGR00416 sms DNA repair prote 93.3 0.29 6.2E-06 56.2 8.7 51 159-209 79-129 (454)
408 PHA02244 ATPase-like protein 93.3 0.14 3.1E-06 56.0 5.9 48 150-201 95-146 (383)
409 cd01120 RecA-like_NTPases RecA 93.3 0.084 1.8E-06 51.0 3.8 34 176-209 1-34 (165)
410 PRK11388 DNA-binding transcrip 93.2 0.85 1.9E-05 55.1 13.2 49 150-198 324-372 (638)
411 PLN02318 phosphoribulokinase/u 93.2 0.093 2E-06 60.6 4.5 34 165-198 56-89 (656)
412 PRK03731 aroL shikimate kinase 93.2 0.069 1.5E-06 52.6 3.1 25 175-199 3-27 (171)
413 PRK12339 2-phosphoglycerate ki 93.2 0.075 1.6E-06 53.6 3.4 25 174-198 3-27 (197)
414 PRK04182 cytidylate kinase; Pr 93.1 0.074 1.6E-06 52.7 3.2 24 176-199 2-25 (180)
415 TIGR00708 cobA cob(I)alamin ad 92.9 0.61 1.3E-05 45.7 9.2 28 174-201 5-32 (173)
416 cd01129 PulE-GspE PulE/GspE Th 92.9 0.32 7E-06 51.5 8.0 94 155-260 63-159 (264)
417 COG5238 RNA1 Ran GTPase-activa 92.9 0.024 5.2E-07 58.0 -0.5 56 558-614 155-224 (388)
418 cd03228 ABCC_MRP_Like The MRP 92.9 0.42 9.1E-06 47.1 8.3 106 175-286 29-167 (171)
419 PF00625 Guanylate_kin: Guanyl 92.9 0.098 2.1E-06 52.2 3.8 35 174-208 2-36 (183)
420 TIGR01313 therm_gnt_kin carboh 92.9 0.062 1.3E-06 52.5 2.4 23 177-199 1-23 (163)
421 TIGR02858 spore_III_AA stage I 92.9 0.86 1.9E-05 48.4 11.0 101 172-275 109-232 (270)
422 KOG1051 Chaperone HSP104 and r 92.9 0.82 1.8E-05 55.7 11.9 98 151-260 562-670 (898)
423 PRK08972 fliI flagellum-specif 92.9 0.22 4.7E-06 56.0 6.7 81 175-260 163-262 (444)
424 PRK00409 recombination and DNA 92.8 0.44 9.6E-06 58.4 9.9 163 172-353 325-526 (782)
425 TIGR03263 guanyl_kin guanylate 92.8 0.07 1.5E-06 53.0 2.6 24 175-198 2-25 (180)
426 COG1121 ZnuC ABC-type Mn/Zn tr 92.8 0.83 1.8E-05 47.5 10.4 103 175-277 31-204 (254)
427 cd01135 V_A-ATPase_B V/A-type 92.8 0.4 8.7E-06 50.5 8.2 82 175-259 70-175 (276)
428 COG1102 Cmk Cytidylate kinase 92.8 0.085 1.8E-06 50.2 2.9 25 176-200 2-26 (179)
429 COG1224 TIP49 DNA helicase TIP 92.8 0.14 3.1E-06 54.7 4.8 54 148-201 36-92 (450)
430 TIGR00176 mobB molybdopterin-g 92.7 0.076 1.6E-06 51.4 2.6 26 176-201 1-26 (155)
431 COG0467 RAD55 RecA-superfamily 92.7 0.17 3.6E-06 53.7 5.5 44 166-209 15-58 (260)
432 PRK15453 phosphoribulokinase; 92.7 0.15 3.2E-06 53.8 4.8 28 172-199 3-30 (290)
433 PRK10820 DNA-binding transcrip 92.7 0.32 6.9E-06 57.1 8.1 50 148-197 201-250 (520)
434 PF03215 Rad17: Rad17 cell cyc 92.6 0.12 2.6E-06 59.9 4.4 58 150-209 18-78 (519)
435 KOG1532 GTPase XAB1, interacts 92.5 0.13 2.9E-06 52.8 4.1 39 172-211 17-55 (366)
436 COG2401 ABC-type ATPase fused 92.5 0.29 6.3E-06 53.4 6.8 44 240-283 515-579 (593)
437 PRK10078 ribose 1,5-bisphospho 92.5 0.084 1.8E-06 52.9 2.7 25 175-199 3-27 (186)
438 cd02027 APSK Adenosine 5'-phos 92.5 0.089 1.9E-06 50.6 2.8 24 176-199 1-24 (149)
439 PRK00300 gmk guanylate kinase; 92.5 0.088 1.9E-06 53.6 2.9 26 174-199 5-30 (205)
440 PRK12726 flagellar biosynthesi 92.5 0.43 9.3E-06 52.5 8.2 38 172-209 204-241 (407)
441 PRK05342 clpX ATP-dependent pr 92.5 0.13 2.9E-06 58.0 4.4 51 152-202 72-136 (412)
442 PLN02348 phosphoribulokinase 92.5 0.16 3.4E-06 56.1 4.9 30 171-200 46-75 (395)
443 PRK14493 putative bifunctional 92.5 0.13 2.9E-06 54.6 4.2 34 175-209 2-35 (274)
444 COG0714 MoxR-like ATPases [Gen 92.5 0.13 2.7E-06 56.7 4.2 49 151-203 24-72 (329)
445 PRK09435 membrane ATPase/prote 92.4 0.23 5E-06 54.2 6.1 40 162-201 44-83 (332)
446 KOG3347 Predicted nucleotide k 92.4 0.099 2.1E-06 48.9 2.7 23 175-197 8-30 (176)
447 PRK14738 gmk guanylate kinase; 92.4 0.11 2.4E-06 52.9 3.5 31 167-197 6-36 (206)
448 TIGR03878 thermo_KaiC_2 KaiC d 92.4 0.2 4.2E-06 53.1 5.4 38 172-209 34-71 (259)
449 PF12775 AAA_7: P-loop contain 92.4 0.12 2.5E-06 55.2 3.7 25 175-199 34-58 (272)
450 TIGR02239 recomb_RAD51 DNA rep 92.4 0.5 1.1E-05 51.5 8.7 37 160-196 82-118 (316)
451 PF08298 AAA_PrkA: PrkA AAA do 92.4 0.11 2.4E-06 56.2 3.5 52 150-201 60-115 (358)
452 COG5238 RNA1 Ran GTPase-activa 92.4 0.071 1.5E-06 54.7 1.9 102 555-660 87-225 (388)
453 PRK10463 hydrogenase nickel in 92.4 0.19 4.2E-06 53.4 5.2 34 172-205 102-135 (290)
454 PLN02200 adenylate kinase fami 92.4 0.11 2.4E-06 54.0 3.5 26 173-198 42-67 (234)
455 COG1124 DppF ABC-type dipeptid 92.3 0.12 2.7E-06 52.6 3.6 23 175-197 34-56 (252)
456 PF13521 AAA_28: AAA domain; P 92.3 0.14 3E-06 50.0 3.9 21 177-197 2-22 (163)
457 KOG1970 Checkpoint RAD17-RFC c 92.3 0.26 5.5E-06 55.7 6.3 44 156-199 87-135 (634)
458 PRK06002 fliI flagellum-specif 92.3 0.23 5E-06 56.0 6.1 24 175-198 166-189 (450)
459 TIGR02173 cyt_kin_arch cytidyl 92.3 0.11 2.4E-06 51.0 3.2 23 176-198 2-24 (171)
460 TIGR00554 panK_bact pantothena 92.3 0.12 2.6E-06 55.3 3.6 28 172-199 60-87 (290)
461 PRK14527 adenylate kinase; Pro 92.3 0.11 2.4E-06 52.2 3.3 26 173-198 5-30 (191)
462 TIGR03305 alt_F1F0_F1_bet alte 92.2 0.44 9.6E-06 53.9 8.2 83 175-260 139-242 (449)
463 TIGR00764 lon_rel lon-related 92.2 0.19 4E-06 59.9 5.5 57 151-211 18-75 (608)
464 COG0488 Uup ATPase components 92.2 4.6 9.9E-05 47.2 16.6 234 46-288 190-511 (530)
465 cd01983 Fer4_NifH The Fer4_Nif 92.2 0.099 2.2E-06 45.5 2.4 25 176-200 1-25 (99)
466 TIGR03877 thermo_KaiC_1 KaiC d 92.2 0.25 5.4E-06 51.6 5.8 49 161-209 8-56 (237)
467 PRK05537 bifunctional sulfate 92.1 0.17 3.7E-06 59.6 4.9 49 152-200 370-418 (568)
468 COG1703 ArgK Putative periplas 92.1 0.16 3.4E-06 53.3 4.1 41 161-201 38-78 (323)
469 PRK06761 hypothetical protein; 92.1 0.12 2.6E-06 54.9 3.3 27 175-201 4-30 (282)
470 TIGR00073 hypB hydrogenase acc 92.0 0.19 4.1E-06 51.3 4.6 30 171-200 19-48 (207)
471 PRK13695 putative NTPase; Prov 92.0 0.15 3.2E-06 50.5 3.7 33 176-208 2-35 (174)
472 COG3640 CooC CO dehydrogenase 91.9 0.21 4.5E-06 50.6 4.5 26 176-201 2-27 (255)
473 PF06068 TIP49: TIP49 C-termin 91.9 0.23 5.1E-06 53.9 5.3 58 149-206 22-82 (398)
474 cd01428 ADK Adenylate kinase ( 91.9 0.12 2.5E-06 52.1 2.9 22 177-198 2-23 (194)
475 TIGR03881 KaiC_arch_4 KaiC dom 91.9 0.28 6.1E-06 50.9 5.9 48 162-209 8-55 (229)
476 PF08477 Miro: Miro-like prote 91.9 0.13 2.7E-06 47.1 2.9 21 177-197 2-22 (119)
477 PF03029 ATP_bind_1: Conserved 91.9 0.17 3.6E-06 52.8 4.1 33 179-212 1-33 (238)
478 cd01136 ATPase_flagellum-secre 91.9 0.45 9.8E-06 51.7 7.5 25 175-199 70-94 (326)
479 PRK05986 cob(I)alamin adenolsy 91.9 1.8 3.9E-05 43.1 11.1 37 173-209 21-57 (191)
480 COG2274 SunT ABC-type bacterio 91.9 1.2 2.6E-05 53.9 11.7 22 175-196 500-521 (709)
481 cd01124 KaiC KaiC is a circadi 91.8 0.17 3.7E-06 50.5 4.0 33 177-209 2-34 (187)
482 COG0237 CoaE Dephospho-CoA kin 91.8 0.13 2.9E-06 51.9 3.1 23 174-196 2-24 (201)
483 PRK13768 GTPase; Provisional 91.8 0.2 4.3E-06 52.8 4.6 26 175-200 3-28 (253)
484 PRK14532 adenylate kinase; Pro 91.8 0.12 2.6E-06 51.7 2.9 22 177-198 3-24 (188)
485 smart00534 MUTSac ATPase domai 91.8 0.13 2.8E-06 51.5 3.1 21 176-196 1-21 (185)
486 PTZ00088 adenylate kinase 1; P 91.8 0.13 2.7E-06 53.3 3.0 22 177-198 9-30 (229)
487 COG1763 MobB Molybdopterin-gua 91.7 0.14 3.1E-06 49.4 3.1 35 174-208 2-36 (161)
488 COG0529 CysC Adenylylsulfate k 91.7 0.16 3.5E-06 49.0 3.4 32 173-204 22-53 (197)
489 cd01672 TMPK Thymidine monopho 91.6 0.33 7.1E-06 48.8 5.9 25 176-200 2-26 (200)
490 PRK04301 radA DNA repair and r 91.6 0.46 9.9E-06 52.0 7.4 61 161-225 89-155 (317)
491 cd01122 GP4d_helicase GP4d_hel 91.6 1.4 3E-05 47.0 10.9 52 174-231 30-82 (271)
492 cd00820 PEPCK_HprK Phosphoenol 91.5 0.15 3.3E-06 45.6 2.9 22 174-195 15-36 (107)
493 COG1875 NYN ribonuclease and A 91.5 1 2.2E-05 48.7 9.3 25 171-195 242-266 (436)
494 KOG0740 AAA+-type ATPase [Post 91.5 1.8 3.8E-05 48.5 11.6 30 172-201 184-213 (428)
495 cd00544 CobU Adenosylcobinamid 91.5 0.9 2E-05 44.6 8.5 76 177-260 2-83 (169)
496 PRK14531 adenylate kinase; Pro 91.5 0.16 3.5E-06 50.6 3.4 23 176-198 4-26 (183)
497 cd03116 MobB Molybdenum is an 91.5 0.24 5.1E-06 48.1 4.4 27 175-201 2-28 (159)
498 PRK08149 ATP synthase SpaL; Va 91.4 0.34 7.3E-06 54.6 6.1 82 174-260 151-251 (428)
499 PRK09825 idnK D-gluconate kina 91.4 0.15 3.3E-06 50.5 3.1 25 175-199 4-28 (176)
500 PRK12723 flagellar biosynthesi 91.4 1 2.2E-05 50.4 9.9 27 173-199 173-199 (388)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.2e-124 Score=1177.47 Aligned_cols=844 Identities=34% Similarity=0.534 Sum_probs=655.7
Q ss_pred CCcEEEccccccccCchhHHHHHHHccCCceEEecCCccCCCcchHHHHHHhhhhceeeeeeccccccccc---------
Q 040255 1 MYDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDDQLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW--------- 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~l~~~L~~~gi~~f~d~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w--------- 71 (869)
+|||||||||+|||++|++|||+||.++||+||+|+++++|+.|+++|++||++|+++|||||++||+|+|
T Consensus 12 ~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~ 91 (1153)
T PLN03210 12 VYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIV 91 (1153)
T ss_pred CCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------eEeeeccccccccccchhHHhHHHHhcch-hhHHhHHHHHHHHHhhcCCCcccccchhhhHhHHHHHH
Q 040255 72 ------------FFYRVDPSHVRKQSHSFGRHFSRLRKRFP-EKMKRWKNALTEAADLSGFDSNVIRPESKLIEEIANDV 138 (869)
Q Consensus 72 ------------vfy~vdp~~vr~q~g~~~~~~~~~~~~~~-~~i~~wr~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v 138 (869)
|||+|||+|||+|+|.|+++|.+++.+.. +++++||+||++||+++||++.++++|+++|++||++|
T Consensus 92 ~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v 171 (1153)
T PLN03210 92 RCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDV 171 (1153)
T ss_pred HhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999987655 89999999999999999999998999999999999999
Q ss_pred HhhccccccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEee--hhhh-
Q 040255 139 LKRLDATFQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNV--REAE- 215 (869)
Q Consensus 139 ~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~s- 215 (869)
.+++..+++.+.+++|||++++++|.++|..+.+++++|+||||||+||||||+++|+++..+|++.+|+... +...
T Consensus 172 ~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~ 251 (1153)
T PLN03210 172 LGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSME 251 (1153)
T ss_pred HHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchh
Confidence 9999998888889999999999999999988888999999999999999999999999999999999998642 1110
Q ss_pred --c-----cC-CHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHccCceEEEecCCC----------------CCcEEEEEe
Q 040255 216 --E-----TG-GIKDLQKKLLSELSKD-GNMR-NIESQLNRLARKKVRIVFDDVT----------------SGSRVIITT 269 (869)
Q Consensus 216 --~-----~~-~~~~l~~~il~~l~~~-~~~~-~~~~l~~~L~~kr~LlVLDDv~----------------~gsrIivTT 269 (869)
. .+ ....++++++.++... .... ....++++|+++|+|||||||| +||||||||
T Consensus 252 ~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 252 IYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred hcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEe
Confidence 0 01 1245667777776533 2222 3577899999999999999998 599999999
Q ss_pred CchhhhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHH
Q 040255 270 RDKQVLKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAM 349 (869)
Q Consensus 270 R~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l 349 (869)
|+++++..++++++|+|+.|+.++|++||+++||++..+++++++++++|+++|+|+||||+++|++|++++.++|+.++
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999988888899999999999999999999999887888899999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhHHHhhhccCcH-HHHHHHhhcccccCCCCHHHHHHHHhh-------------cCcceEeccCCeEEe
Q 040255 350 RKLEIIPHVEIEEVLKISYDSLDD-SQKNVFLDIACFLEGEHRDEVISIFDA-------------SKSLINLDLFYRIRM 415 (869)
Q Consensus 350 ~~l~~~~~~~i~~~L~~Sy~~L~~-~~k~~fl~~a~F~~~~~~~~l~~~~~~-------------~~sLi~~~~~~~~~m 415 (869)
++++..++.+|..+|++||++|++ .+|.||++|||||.+++.+.+..++.. ++|||++. .+++.|
T Consensus 412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~M 490 (1153)
T PLN03210 412 PRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEM 490 (1153)
T ss_pred HHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEh
Confidence 999998888999999999999986 589999999999999999998888764 89999987 688999
Q ss_pred cHHHHHHhHhhhhccccCCCCCcceecchhhHHHHHhhcCCcceeeccccccccccceeeecccccccCCcceEEEEcCC
Q 040255 416 HDLLRDMGREIVRKESINHPGKRNRLWHHKDIYQVLKKNTGTEAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGD 495 (869)
Q Consensus 416 Hdll~~~~~~i~~~e~~~~~~~~~~l~~~~~~~~vl~~~~~~~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~ 495 (869)
|||+|+||++++++++ .+|++|+|+|+++|+++++..++|++++++|.+|++... +..+.+.+|.+|++|++|.++.+
T Consensus 491 HdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~-~~~i~~~aF~~m~~L~~L~~~~~ 568 (1153)
T PLN03210 491 HSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID-ELHIHENAFKGMRNLLFLKFYTK 568 (1153)
T ss_pred hhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc-eeeecHHHHhcCccccEEEEecc
Confidence 9999999999999997 789999999999999999999999999999999999987 78899999999999999999763
Q ss_pred C-------CccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCC------------
Q 040255 496 K-------NKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPS------------ 554 (869)
Q Consensus 496 ~-------~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~------------ 554 (869)
. ..++|.++..++ .+||+|+|.+|+++.+ .+.+.+|+.|+|++|+++.+|.+++.++.
T Consensus 569 ~~~~~~~~~~~lp~~~~~lp-~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l 647 (1153)
T PLN03210 569 KWDQKKEVRWHLPEGFDYLP-PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL 647 (1153)
T ss_pred cccccccceeecCcchhhcC-cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCc
Confidence 2 346788888888 8999999999999999 77889999999999999998875433322
Q ss_pred ----ccCCCCCccEEEecCCCCCcccCcc---cccc--------------------------------------------
Q 040255 555 ----SLCTFKTPITFEIIDCKMLERLPDE---LENL-------------------------------------------- 583 (869)
Q Consensus 555 ----~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L-------------------------------------------- 583 (869)
.++.+++|+.|+|++|..+..+|.. +++|
T Consensus 648 ~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL 727 (1153)
T PLN03210 648 KEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNI 727 (1153)
T ss_pred CcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCc
Confidence 2333444444444444433333332 2222
Q ss_pred chhcccccccccCCCCcC------------------------------CccccceecccccccccccCccccCCCCCCEE
Q 040255 584 EYLTVKGTTIRELPESLG------------------------------RLSWVKRLILSNNSNLERIPESIRHLSKLTFL 633 (869)
Q Consensus 584 ~~L~L~~n~i~~lP~~i~------------------------------~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 633 (869)
++|+|++|.++++|..+. .+++|+.|+|++|..+..+|.++++|++|+.|
T Consensus 728 ~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 728 SWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred CeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence 223333333333332210 01244555555554555566666667777777
Q ss_pred ecCCCCCCcccCCC--CcccceeecccCCCCcc--------------------ccCCCCCCccceEEeccC---------
Q 040255 634 FISHCERLQTLPEL--PCNLGLLSARNCTSLEK--------------------LPAGLSSMSSVLYVNLCN--------- 682 (869)
Q Consensus 634 ~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~--------------------lp~~~~~l~~L~~l~l~~--------- 682 (869)
+|++|+.++.+|.. +++|+.|++++|..+.. +|.++.++++|++|++++
T Consensus 808 ~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 808 EIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred ECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 77766666666643 34455555555443332 233333344445554443
Q ss_pred ---------------CCCCCchhhhh------------------hhhcccccccccc------ccCCceeeecCCCCCCc
Q 040255 683 ---------------FLKLDPNELSE------------------IVKDGWMKHSLYE------ERGIKKSMYFPGNEIPK 723 (869)
Q Consensus 683 ---------------~~~~~~~~l~~------------------~~~~~~~~~~~l~------~~~~~~~~~~pg~~iP~ 723 (869)
|..+..-.+.. .....+..+..+. ........++||.++|+
T Consensus 888 ~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~ 967 (1153)
T PLN03210 888 NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPS 967 (1153)
T ss_pred ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEECCCccCch
Confidence 33221000000 0000111111111 01112456789999999
Q ss_pred ccccCCCCCeEE-EecCCCCCCCCCCceeEEEEEEEeccCccc-----eeeeeeeecCCCCCeeeEEeecccCCCccccc
Q 040255 724 WFRHQSMGSSAT-LKTRPPRPAGYNKLISFAFCAVVVFPAFLK-----YFRHKSGEDDWDGNVYAVCCDWKRKSEGHLYS 797 (869)
Q Consensus 724 w~~~~~~g~~i~-i~lp~~~~~~~~~~~gf~~c~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (869)
||.||+.|++++ |.+|+.|+ +..|.||++|+|+++..... .+.|.|.|++.+|++.+..... + .
T Consensus 968 ~f~hr~~g~sl~~i~l~~~~~--~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~------~--~ 1037 (1153)
T PLN03210 968 YFTHRTTGASLTNIPLLHISP--CQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQP------H--V 1037 (1153)
T ss_pred hccCCcccceeeeeccCCccc--CCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccccCCCc------e--e
Confidence 999999999998 99999998 78899999999998876432 6789999998888664321100 0 0
Q ss_pred cccCCccccCCCeEEEEeecCC-CCCCCCCCCCCCccceEEEEEeccCC--CeeEEEeceEEEEecCCcc
Q 040255 798 WFLGKISYVESDHVFLGCNSFG-GEYFGPNYDEFSFRIHCSFHFPPYLE--RGEVKKCGIHFVYAQDSAD 864 (869)
Q Consensus 798 ~~~~~~~~~~sdh~~l~y~~~~-~~~~~~~~~~~~~~~~~~f~f~~~~~--~~~vk~CGv~~~y~~~~~~ 864 (869)
| ......+|++++...+. +.+.... . -..|++++++|..+.. .++||+|||+++|+.+..+
T Consensus 1038 ~----~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210 1038 F----SVTKKGSHLVIFDCCFPLNEDNAPL-A-ELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred E----eeeccccceEEecccccccccccch-h-ccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCcc
Confidence 0 11234567665432111 1111111 0 1247777777755443 3699999999999776554
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-53 Score=507.57 Aligned_cols=420 Identities=25% Similarity=0.362 Sum_probs=328.3
Q ss_pred eeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHH--h-hcCccCceEEEEeehhhhccCCHHHHHHHHHHH
Q 040255 154 VGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFN--K-ISRHFEGSYFALNVREAEETGGIKDLQKKLLSE 230 (869)
Q Consensus 154 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~-~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~ 230 (869)
||.+..++++.+.|..+.. .+|||+||||+||||||+.++| . +..+|+.++|+. +|+.++...++++|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999986543 9999999999999999999999 3 789999999999 88899999999999998
Q ss_pred hhcCCCCC-----C--HHHHHHHHccCceEEEecCCC----------------CCcEEEEEeCchhhhhh-cCCCeEEEe
Q 040255 231 LSKDGNMR-----N--IESQLNRLARKKVRIVFDDVT----------------SGSRVIITTRDKQVLKN-CWANKKYRM 286 (869)
Q Consensus 231 l~~~~~~~-----~--~~~l~~~L~~kr~LlVLDDv~----------------~gsrIivTTR~~~v~~~-~~~~~~~~l 286 (869)
++..+... + ...+.+.|.+||++||||||| .||+|++|||++.|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 87432222 1 667788899999999999999 67999999999999998 788889999
Q ss_pred CCCCHHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCC-CHHHHHHHHHHHhcC-----C--C
Q 040255 287 KELVYADAHKLFCQWAFGGD-HLDASHIELTDKAIKYAQGVPLALKVLGCYLCGR-SKEVWESAMRKLEII-----P--H 357 (869)
Q Consensus 287 ~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~-----~--~ 357 (869)
+.|+.+|||+||++.||... ...+..+++|++++++|+|+|||++++|+.|+.| +..+|+.+.+.+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999999763 3334589999999999999999999999999976 677999999988654 1 3
Q ss_pred chhhhHHHhhhccCcHHHHHHHhhcccccCCCC--HHHHHHHHhh-------------------------cCcceEecc-
Q 040255 358 VEIEEVLKISYDSLDDSQKNVFLDIACFLEGEH--RDEVISIFDA-------------------------SKSLINLDL- 409 (869)
Q Consensus 358 ~~i~~~L~~Sy~~L~~~~k~~fl~~a~F~~~~~--~~~l~~~~~~-------------------------~~sLi~~~~- 409 (869)
+.|..+|++|||.||++.|.||+|||.||+++. ++.++..|.+ .++|+....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 568999999999999999999999999999985 6889999988 344444432
Q ss_pred ---CCeEEecHHHHHHhHhhhhccccCCCCCcceecchhhHHHHHhhcCCcceeeccccccccccceeeecccccccCCc
Q 040255 410 ---FYRIRMHDLLRDMGREIVRKESINHPGKRNRLWHHKDIYQVLKKNTGTEAIEGISLDMNKVNREIHMNSYAFSKMPK 486 (869)
Q Consensus 410 ---~~~~~mHdll~~~~~~i~~~e~~~~~~~~~~l~~~~~~~~vl~~~~~~~~v~~i~l~~~~~~~~~~~~~~~f~~l~~ 486 (869)
...+.|||++||||..++.+.+..... .+... ..+. . + .....+...
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~iv~~---------~~~~----------~------~--~~~~~~~~~ 524 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEEN---QIVSD---------GVGL----------S------E--IPQVKSWNS 524 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccc---eEEEC---------CcCc----------c------c--cccccchhh
Confidence 268999999999999999865422111 01000 0000 0 0 000112234
Q ss_pred ceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecCCCcccccccccccCCC-ccCCCCCccEE
Q 040255 487 LRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMPCTKVEQLWDDVQRLPS-SLCTFKTPITF 565 (869)
Q Consensus 487 Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~lp~-~~~~l~~L~~L 565 (869)
.|...+.++....++..... ..|++|-+..|.. .+..++. .|..++.|++|
T Consensus 525 ~rr~s~~~~~~~~~~~~~~~-----------------------~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVL 576 (889)
T KOG4658|consen 525 VRRMSLMNNKIEHIAGSSEN-----------------------PKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVL 576 (889)
T ss_pred eeEEEEeccchhhccCCCCC-----------------------CccceEEEeecch-----hhhhcCHHHHhhCcceEEE
Confidence 44444444333333322221 1344444444431 0122332 26678899999
Q ss_pred EecCCCCCcccCcc---ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCC
Q 040255 566 EIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISH 637 (869)
Q Consensus 566 ~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~ 637 (869)
||++|..++.+|.. +-+|++|+|+++.++.+|.++++|..|.+||+..+..+..+|..+..|++|++|.+..
T Consensus 577 DLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 577 DLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 99999999999988 8899999999999999999999999999999999977777776677799999998865
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.6e-36 Score=328.05 Aligned_cols=241 Identities=29% Similarity=0.452 Sum_probs=200.1
Q ss_pred ccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh--hcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhc
Q 040255 156 VECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK--ISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSK 233 (869)
Q Consensus 156 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~ 233 (869)
||+++++|.+.|....++.++|+|+||||+||||||++++++ +..+|+.++|+.. +.......+.++++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----ccccccccccccccccccc
Confidence 788999999999876688999999999999999999999997 8999999999983 4445558888899999885
Q ss_pred CCCC----CC----HHHHHHHHccCceEEEecCCC----------------CCcEEEEEeCchhhhhhcCC-CeEEEeCC
Q 040255 234 DGNM----RN----IESQLNRLARKKVRIVFDDVT----------------SGSRVIITTRDKQVLKNCWA-NKKYRMKE 288 (869)
Q Consensus 234 ~~~~----~~----~~~l~~~L~~kr~LlVLDDv~----------------~gsrIivTTR~~~v~~~~~~-~~~~~l~~ 288 (869)
.... .+ ...+.+.|.++++|||||||| .|++||||||+..++..++. ...|+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5322 12 678888999999999999998 69999999999999876654 67999999
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCC-CHHHHHHHHHHHhcCC------Cchh
Q 040255 289 LVYADAHKLFCQWAFGGD-HLDASHIELTDKAIKYAQGVPLALKVLGCYLCGR-SKEVWESAMRKLEIIP------HVEI 360 (869)
Q Consensus 289 L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~~i 360 (869)
|+.+||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999998755 3345567789999999999999999999999543 6788999998876433 4669
Q ss_pred hhHHHhhhccCcHHHHHHHhhcccccCCCC--HHHHHHHHhh
Q 040255 361 EEVLKISYDSLDDSQKNVFLDIACFLEGEH--RDEVISIFDA 400 (869)
Q Consensus 361 ~~~L~~Sy~~L~~~~k~~fl~~a~F~~~~~--~~~l~~~~~~ 400 (869)
..++..||+.|+++.|+||++||+||.++. ++.++++|.+
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 999999999999999999999999999875 8999999987
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3.9e-36 Score=286.23 Aligned_cols=134 Identities=27% Similarity=0.429 Sum_probs=124.3
Q ss_pred CCcEEEccccccccCchhHHHHHHHccCCceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccccccc--------
Q 040255 1 MYDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW-------- 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w-------- 71 (869)
+|||||||||+|||++|++|||++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++||+|+|
T Consensus 26 ~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I 105 (187)
T PLN03194 26 PCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALI 105 (187)
T ss_pred CCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHH
Confidence 599999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred ---------eEeeecccccccc-ccchhHHhHHHHhcchhhHHhHHHHHHHHHhhcCCCccc-ccchhhhHhHHHHHHHh
Q 040255 72 ---------FFYRVDPSHVRKQ-SHSFGRHFSRLRKRFPEKMKRWKNALTEAADLSGFDSNV-IRPESKLIEEIANDVLK 140 (869)
Q Consensus 72 ---------vfy~vdp~~vr~q-~g~~~~~~~~~~~~~~~~i~~wr~al~~~~~~~g~~~~~-~~~e~~~i~~i~~~v~~ 140 (869)
|||+|||+|||+| .|.. ..+++++||+||++||+++|+++.. .++|+++|++|++.|.+
T Consensus 106 ~e~~~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k 175 (187)
T PLN03194 106 MESKKRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIK 175 (187)
T ss_pred HHcCCEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999997 4432 2379999999999999999987753 58899999999999998
Q ss_pred hccc
Q 040255 141 RLDA 144 (869)
Q Consensus 141 ~l~~ 144 (869)
++..
T Consensus 176 ~l~~ 179 (187)
T PLN03194 176 NLIE 179 (187)
T ss_pred HHHH
Confidence 8754
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=1.7e-19 Score=227.68 Aligned_cols=238 Identities=17% Similarity=0.260 Sum_probs=148.2
Q ss_pred CCCCcceecchhhHHHHHhhcC--CcceeeccccccccccceeeecccccccCCcceEEEEcCCCCc-cccCcCC-CCCC
Q 040255 434 HPGKRNRLWHHKDIYQVLKKNT--GTEAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNK-CMVSHLE-GVPF 509 (869)
Q Consensus 434 ~~~~~~~l~~~~~~~~vl~~~~--~~~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~-~~~~~l~-~l~~ 509 (869)
+|.++.+.|...+.+......+ ....|..+.+..+... ...+..|.++++|+.|++++|... .+|..+. .+
T Consensus 43 ~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~---~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l-- 117 (968)
T PLN00113 43 DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNIS---GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS-- 117 (968)
T ss_pred CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCcc---ccCChHHhCCCCCCEEECCCCccCCcCChHHhccC--
Confidence 4555566675432222222111 1335665555544433 233667899999999999987643 6776655 44
Q ss_pred CCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccccc
Q 040255 510 AEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLE 584 (869)
Q Consensus 510 ~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~ 584 (869)
.+|++|++++|.+... ...+.+|++|+|++|.+. +.+|..++++++|++|+|++|...+.+|.. +++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLS------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCccc------ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 4899999999887654 446778888888888876 345556666677777777776655556654 66666
Q ss_pred hhcccccccc-cCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCC
Q 040255 585 YLTVKGTTIR-ELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCT 660 (869)
Q Consensus 585 ~L~L~~n~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 660 (869)
+|+|++|.+. .+|..++++++|++|+|++|...+.+|..++++++|++|++++|+..+.+|.. +++|+.|++.+|.
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 6667666665 55666666666666666666444456666666666666666666555555543 3455556665554
Q ss_pred CCccccCCCCCCccceEEeccC
Q 040255 661 SLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 661 ~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
..+.+|..+.++++|+.|++++
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred eeccCchhHhhccCcCEEECcC
Confidence 4445555555555555555554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=1.1e-17 Score=211.22 Aligned_cols=198 Identities=17% Similarity=0.277 Sum_probs=123.3
Q ss_pred eecccccccCCcceEEEEcCCCCc-cccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCccccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNK-CMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~-~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~ 549 (869)
.++...|.++++|++|++++|... .+|. ..+ ++|++|++++|.+... ...+.+|++|+|++|.+.
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l--~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~------ 177 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI--PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV------ 177 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCc--ccc--CCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc------
Confidence 345555667888888888775433 2332 223 3777777777776533 445677777777777665
Q ss_pred ccCCCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccc-cCCCCcCCccccceecccccccccccCcccc
Q 040255 550 QRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIR-ELPESLGRLSWVKRLILSNNSNLERIPESIR 625 (869)
Q Consensus 550 ~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~ 625 (869)
+.+|.+++++++|++|+|++|...+.+|.. +++|++|+|++|.+. .+|..++++++|++|+|++|...+.+|..++
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 345666666777777777776655556654 566666666666666 5666666666666666666644445666666
Q ss_pred CCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccC
Q 040255 626 HLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 626 ~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
++++|+.|+|++|+..+.+|.. +.+|+.|++++|...+.+|..+.++++|+.|++++
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 6666666666666555555543 34556666666555555555555666666666554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=1.2e-18 Score=188.79 Aligned_cols=219 Identities=16% Similarity=0.239 Sum_probs=147.2
Q ss_pred eeecccccccCCcceEEEEcCCCCccccCcC-CCCC----------------------CCCeeEEecCCCCCCcc----c
Q 040255 474 IHMNSYAFSKMPKLRFLRFYGDKNKCMVSHL-EGVP----------------------FAEVRHLEWPQCPLKTL----N 526 (869)
Q Consensus 474 ~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l-~~l~----------------------~~~L~~L~l~~~~l~~l----~ 526 (869)
..+....|.++.+|-.|.|+.|....+|... ..++ +++|+.|.+..|.+..+ +
T Consensus 186 t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 186 TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 3444555555555555555555555554422 2233 12444444444444444 4
Q ss_pred cccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccC-CCCcC
Q 040255 527 ICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLG 601 (869)
Q Consensus 527 ~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~ 601 (869)
+.+.++.+|+|..|++..+..| ++.+|++|+.|+||.|. +..+... -+.|+.|+|++|+|+++ |.++.
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g------~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEG------WLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred eeecccceeecccchhhhhhcc------cccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHH
Confidence 4455555555555555433322 67788889999999887 5555443 67889999999999888 45677
Q ss_pred CccccceecccccccccccCcc-ccCCCCCCEEecCCCCCCcccCCC------CcccceeecccCCCCccccC-CCCCCc
Q 040255 602 RLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHCERLQTLPEL------PCNLGLLSARNCTSLEKLPA-GLSSMS 673 (869)
Q Consensus 602 ~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~~lp~~------~~~L~~L~l~~c~~l~~lp~-~~~~l~ 673 (869)
.|+.|++|+|++| .+..|-+. +..+++|+.|+|++|.....+.+. +++|+.|.+.+ ++++.+|. .|..+.
T Consensus 339 ~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~ 416 (873)
T KOG4194|consen 339 VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLE 416 (873)
T ss_pred HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCc
Confidence 7888999999998 78887765 788899999999998776666543 78899999998 68999998 889999
Q ss_pred cceEEeccCCCCCCchhhhhhhhcccccccccccc
Q 040255 674 SVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEER 708 (869)
Q Consensus 674 ~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 708 (869)
.|..|||.+| .+..+.+.++.++ .+..+
T Consensus 417 ~LE~LdL~~N------aiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 417 ALEHLDLGDN------AIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred ccceecCCCC------cceeecccccccc-hhhhh
Confidence 9999999884 3444455555555 44433
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=4.6e-18 Score=184.96 Aligned_cols=214 Identities=23% Similarity=0.347 Sum_probs=146.3
Q ss_pred ccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeec
Q 040255 462 GISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKM 537 (869)
Q Consensus 462 ~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L 537 (869)
.|.|++|.+. ...++...|.++..|-+|+|++|....+|+.+..+. .|+.|.+++||+... .-.+.+|..|+|
T Consensus 128 ~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~--~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 128 SIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS--MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh--hhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 3566777665 667888889999999999999998889999888887 899999999998765 445666777777
Q ss_pred CCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCCccccceeccccc
Q 040255 538 PCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNN 614 (869)
Q Consensus 538 ~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n 614 (869)
++.+-+ ...+|.++..|.+|..+|||.|+ +..+|+. +.+|+.|+||+|.|+++...++...+|++|+||.|
T Consensus 205 s~TqRT-----l~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 205 SNTQRT-----LDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred ccccch-----hhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 766543 24566666667777777776665 6666665 56666666666666666666666666666666666
Q ss_pred ccccccCccccCCCCCCEEecCCC------------------------CCCcccCCCC---cccceeecccCCCCccccC
Q 040255 615 SNLERIPESIRHLSKLTFLFISHC------------------------ERLQTLPELP---CNLGLLSARNCTSLEKLPA 667 (869)
Q Consensus 615 ~~l~~lP~~i~~L~~L~~L~L~~c------------------------~~l~~lp~~~---~~L~~L~l~~c~~l~~lp~ 667 (869)
.+..+|..+.+|++|+.|.+.+| +++.-+|+.+ +.|+.|.+. |+.|-++|.
T Consensus 279 -QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~-~NrLiTLPe 356 (1255)
T KOG0444|consen 279 -QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD-HNRLITLPE 356 (1255)
T ss_pred -hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc-ccceeechh
Confidence 56666665666666655555543 3344444443 234445543 456667777
Q ss_pred CCCCCccceEEeccCCCCC
Q 040255 668 GLSSMSSVLYVNLCNFLKL 686 (869)
Q Consensus 668 ~~~~l~~L~~l~l~~~~~~ 686 (869)
.+.-|+.|..|++..|+.+
T Consensus 357 aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhcCCcceeeccCCcCc
Confidence 7777777778887777665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=3.1e-17 Score=178.60 Aligned_cols=212 Identities=20% Similarity=0.307 Sum_probs=134.8
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
..++.+.+.-++.+ ..-++++ +-+|..|..|+|+.|.....|.++.+.. ++-+|++++|.+.++ +.++..|-
T Consensus 78 p~LRsv~~R~N~LK-nsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AK--n~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLK-NSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAK--NSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hhhHHHhhhccccc-cCCCCch-hcccccceeeecchhhhhhcchhhhhhc--CcEEEEcccCccccCCchHHHhhHhHh
Confidence 34444444334333 2334444 4478888888888888888888888876 788888888888777 56777888
Q ss_pred eeecCCCcccccccccccCCCccCCCCCccEEEecCCCC-------------------------CcccCcc---ccccch
Q 040255 534 SLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKM-------------------------LERLPDE---LENLEY 585 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~-------------------------l~~lp~~---l~~L~~ 585 (869)
.|+|++|+++. ||+.+..|..|++|.|++|.. +..+|.. |.||..
T Consensus 154 fLDLS~NrLe~-------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 154 FLDLSNNRLEM-------LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred hhccccchhhh-------cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 88888888874 444455555566666665541 2234443 556666
Q ss_pred hcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCCC---cccceeecccCCC-
Q 040255 586 LTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPELP---CNLGLLSARNCTS- 661 (869)
Q Consensus 586 L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~~---~~L~~L~l~~c~~- 661 (869)
+|||.|++..+|..+.++.+|+.|+||+| .++.+...++...+|++|+|+. +.+..+|..+ +.|+.|.+.++..
T Consensus 227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 227 VDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCccc
Confidence 66666666666666666666666666666 6666665566666666666666 4566677653 4445555555432
Q ss_pred CccccCCCCCCccceEEeccC
Q 040255 662 LEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 662 l~~lp~~~~~l~~L~~l~l~~ 682 (869)
.+-||+.++.|..|..+...+
T Consensus 305 FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhc
Confidence 556777777777776666444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=5.4e-17 Score=169.22 Aligned_cols=203 Identities=27% Similarity=0.371 Sum_probs=160.9
Q ss_pred eeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCccccccccccc
Q 040255 474 IHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQR 551 (869)
Q Consensus 474 ~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~ 551 (869)
..+++.... |+.|+.|+...|....+|+.++.+. +|..|++..|.+..+ +..+..|++|++..|.++.
T Consensus 173 ~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~--~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~------- 242 (565)
T KOG0472|consen 173 KALPENHIA-MKRLKHLDCNSNLLETLPPELGGLE--SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEM------- 242 (565)
T ss_pred hhCCHHHHH-HHHHHhcccchhhhhcCChhhcchh--hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHh-------
Confidence 344454444 8999999988888888898888886 888888999988888 6667788888888888763
Q ss_pred CCCccC-CCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCC-------------------------
Q 040255 552 LPSSLC-TFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGR------------------------- 602 (869)
Q Consensus 552 lp~~~~-~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~------------------------- 602 (869)
+|...+ ++.+|.+|||.+|+ ++++|+. +.+|.+||+|+|.|+.+|.++|+
T Consensus 243 lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred hHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccH
Confidence 454444 77888888888887 8888887 77888888888888888888876
Q ss_pred --------------------------------------------------------------------------------
Q 040255 603 -------------------------------------------------------------------------------- 602 (869)
Q Consensus 603 -------------------------------------------------------------------------------- 602 (869)
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence
Q ss_pred --------------------------------ccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC---
Q 040255 603 --------------------------------LSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL--- 647 (869)
Q Consensus 603 --------------------------------l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~--- 647 (869)
+++|..|+|++| .+..+|..++.+..|+.|+++.| ....+|+.
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~ 479 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYE 479 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhh
Confidence 778899999999 89999999999999999999875 45555532
Q ss_pred ------------------------CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchh
Q 040255 648 ------------------------PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNE 690 (869)
Q Consensus 648 ------------------------~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~ 690 (869)
+.+|+.|++.+ +.+.++|..++++++|+.|.+.+|+-..|..
T Consensus 480 lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~ 545 (565)
T KOG0472|consen 480 LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQPRH 545 (565)
T ss_pred HHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccCCCHH
Confidence 34567777766 5788888888888888888888877665554
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=1.1e-16 Score=173.74 Aligned_cols=237 Identities=21% Similarity=0.265 Sum_probs=179.3
Q ss_pred cccccccceeeecccccccCCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc---ccc-cccceeeecCC
Q 040255 465 LDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL---NIC-AEKLVSLKMPC 539 (869)
Q Consensus 465 l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l---~~~-~~~L~~L~L~~ 539 (869)
+|++.+. ...+....|..-.+++.|+|++|....+-. .+..+. +|..|.++.|.++.+ .|. +++|+.|+|..
T Consensus 154 lDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln--sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 154 LDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN--SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccc--hheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 4555544 456777788888999999999988777655 344454 999999999999988 444 89999999999
Q ss_pred Cccccc-ccccccCCC-----------------ccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccC-
Q 040255 540 TKVEQL-WDDVQRLPS-----------------SLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL- 596 (869)
Q Consensus 540 n~l~~l-~~~~~~lp~-----------------~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l- 596 (869)
|+|+.. |-..+.||+ .|..+.++++|+|..|+ +..+-.. +..|+.|+||+|.|..+
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheee
Confidence 998866 433333443 45677888888888887 6666554 78889999999999976
Q ss_pred CCCcCCccccceecccccccccccCcc-ccCCCCCCEEecCCCCCCcccCCC----CcccceeecccCCCCccc---cCC
Q 040255 597 PESLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHCERLQTLPEL----PCNLGLLSARNCTSLEKL---PAG 668 (869)
Q Consensus 597 P~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~l---p~~ 668 (869)
++++...++|+.|+|+.| .+.++|++ +..|+.|+.|+|++ +.+..|-+. +++|+.|++.++.....+ ...
T Consensus 310 ~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred cchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 778888899999999999 88888865 88889999999998 566777664 789999999887653333 336
Q ss_pred CCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCcee
Q 040255 669 LSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKS 713 (869)
Q Consensus 669 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 713 (869)
+..|++|+.|.|.+ |++..+...++..+..++.+++..|
T Consensus 388 f~gl~~LrkL~l~g------Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTG------NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hccchhhhheeecC------ceeeecchhhhccCcccceecCCCC
Confidence 77889999999877 4444455556666666776665533
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=6.7e-14 Score=165.46 Aligned_cols=182 Identities=27% Similarity=0.295 Sum_probs=114.9
Q ss_pred CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecCCCcccccccc-------------ccc
Q 040255 485 PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMPCTKVEQLWDD-------------VQR 551 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~-------------~~~ 551 (869)
++|+.|++++|....+|. ++ .+|+.|++++|.++.+...+++|+.|++++|+++.++.. +..
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~----lp-~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPA----LP-SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS 336 (788)
T ss_pred cccceeeccCCchhhhhh----ch-hhcCEEECcCCccccccccccccceeECCCCccccCCCCcccccccccccCcccc
Confidence 455566665554444433 22 356667777777766644456788888888777754321 111
Q ss_pred CCCccCCCCCccEEEecCCCCCcccCccccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCC
Q 040255 552 LPSSLCTFKTPITFEIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLT 631 (869)
Q Consensus 552 lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~ 631 (869)
+|. ...+|+.|+|++|. +..+|....+|+.|++++|.|+.+|.. +++|+.|+|++| .+..+|.. .++|+
T Consensus 337 LP~---lp~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~l---~s~L~ 405 (788)
T PRK15387 337 LPT---LPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLPVL---PSELK 405 (788)
T ss_pred ccc---cccccceEecCCCc-cCCCCCCCcccceehhhccccccCccc---ccccceEEecCC-cccCCCCc---ccCCC
Confidence 111 01256677777665 566666566666677777777666643 246777777777 67777753 35677
Q ss_pred EEecCCCCCCcccCCCCcccceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 632 FLFISHCERLQTLPELPCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 632 ~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
.|++++| .+..+|..+.+|+.|++++ +.+.++|..+.++++|..+++++|+
T Consensus 406 ~LdLS~N-~LssIP~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 406 ELMVSGN-RLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred EEEccCC-cCCCCCcchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 7788774 4566777777777777776 4567788777778888888877743
No 13
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.49 E-value=5.7e-15 Score=141.29 Aligned_cols=108 Identities=34% Similarity=0.562 Sum_probs=94.2
Q ss_pred EEEccccccccCchhHHHHHHHccC--CceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccccccc---------
Q 040255 4 VFLSFRGEDTRDNFTSHLHHVLSLK--SIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW--------- 71 (869)
Q Consensus 4 vF~sf~g~d~r~~f~~~l~~~L~~~--gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w--------- 71 (869)
|||||+|.+++..|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++||++|+|||++|++|.|
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999666789999999999999 99999999 89999999999999999999999999999999999
Q ss_pred --------------eEeeecccccc-ccccchhHHhHHHHhcch-----hhHHhHHHHHH
Q 040255 72 --------------FFYRVDPSHVR-KQSHSFGRHFSRLRKRFP-----EKMKRWKNALT 111 (869)
Q Consensus 72 --------------vfy~vdp~~vr-~q~g~~~~~~~~~~~~~~-----~~i~~wr~al~ 111 (869)
+||+|.+++++ .+.+.|...+..+..... .+...|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 89999999999 799999988876654333 46788988764
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.9e-15 Score=140.56 Aligned_cols=158 Identities=21% Similarity=0.333 Sum_probs=105.0
Q ss_pred cccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCCccC
Q 040255 481 FSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLC 557 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~ 557 (869)
+-+|++...|.++.|....+|+++..+. +|+.|++.+|+++.+ ...+..|+.|++.-|++. .+|..|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~--nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-------~lprgfg 99 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELK--NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-------ILPRGFG 99 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhh--hhhhhhcccchhhhcChhhhhchhhhheecchhhhh-------cCccccC
Confidence 3466777777788777777777777775 677777777666666 445566666666666654 3455566
Q ss_pred CCCCccEEEecCCCCC-cccCcc---ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEE
Q 040255 558 TFKTPITFEIIDCKML-ERLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFL 633 (869)
Q Consensus 558 ~l~~L~~L~L~~~~~l-~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 633 (869)
.++.|++|||.+|..- ..+|.. |..|+.|+|+.|.++-+|+.+++|++|+.|.+..| .+-++|..++.|++|+.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLREL 178 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHH
Confidence 6667777777766522 245555 66677777777777777777777777777777777 666777777777777777
Q ss_pred ecCCCCCCcccCCCCc
Q 040255 634 FISHCERLQTLPELPC 649 (869)
Q Consensus 634 ~L~~c~~l~~lp~~~~ 649 (869)
.+.+ +.++.+|+.+.
T Consensus 179 hiqg-nrl~vlppel~ 193 (264)
T KOG0617|consen 179 HIQG-NRLTVLPPELA 193 (264)
T ss_pred hccc-ceeeecChhhh
Confidence 7776 45555655433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=2.4e-13 Score=160.86 Aligned_cols=172 Identities=25% Similarity=0.288 Sum_probs=102.4
Q ss_pred CCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecCCCcccccccccccCCCccCCCCCcc
Q 040255 484 MPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPI 563 (869)
Q Consensus 484 l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~ 563 (869)
+++|++|++++|....+|. ++ ++|+.|++.+|.++.+...+.+|..|++++|+++.+ |. .+++|+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~----lp-~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~L-------P~---~p~~L~ 305 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV----LP-PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL-------PV---LPPGLQ 305 (788)
T ss_pred CCCCcEEEecCCccCcccC----cc-cccceeeccCCchhhhhhchhhcCEEECcCCccccc-------cc---cccccc
Confidence 3555556655554444432 12 355555555555555533344555666666655532 22 134677
Q ss_pred EEEecCCCCCcccCccccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcc
Q 040255 564 TFEIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQT 643 (869)
Q Consensus 564 ~L~L~~~~~l~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~ 643 (869)
.|+|++|. +..+|....+|+.|++++|.++.+|.. ..+|+.|+|++| .+..+|.. ..+|+.|++++ +.+..
T Consensus 306 ~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~-N~L~~ 376 (788)
T PRK15387 306 ELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYN-NRLTS 376 (788)
T ss_pred eeECCCCc-cccCCCCcccccccccccCcccccccc---ccccceEecCCC-ccCCCCCC---Ccccceehhhc-ccccc
Confidence 77777775 666666556677777777777776642 246777777777 67777753 24566667776 44556
Q ss_pred cCCCCcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 644 LPELPCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 644 lp~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
+|..+++|+.|++++| .+..+|... ++|+.|++++|
T Consensus 377 LP~l~~~L~~LdLs~N-~Lt~LP~l~---s~L~~LdLS~N 412 (788)
T PRK15387 377 LPALPSGLKELIVSGN-RLTSLPVLP---SELKELMVSGN 412 (788)
T ss_pred CcccccccceEEecCC-cccCCCCcc---cCCCEEEccCC
Confidence 7777777777777764 455666533 45666776664
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=2.2e-15 Score=157.29 Aligned_cols=195 Identities=23% Similarity=0.313 Sum_probs=161.2
Q ss_pred ecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccC
Q 040255 476 MNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRL 552 (869)
Q Consensus 476 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l 552 (869)
.-|.....+.+|+.|+++.|....+|++++.+. .|..|+..+|.+.++ .+.+.+|..|++.+|+++ .+
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~--~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-------~l 175 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNELKELPDSIGRLL--DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-------AL 175 (565)
T ss_pred hccHHHhhhhhhhhhhccccceeecCchHHHHh--hhhhhhccccccccCchHHHHHHHHHHhhccccchh-------hC
Confidence 345666777888888888888888888877776 777788888887777 666777888888888876 34
Q ss_pred CCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCCccccceecccccccccccCcccc-CCC
Q 040255 553 PSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIR-HLS 628 (869)
Q Consensus 553 p~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~-~L~ 628 (869)
|...-+++.|+.||...|- ++.+|+. |.+|.-|+|..|.|..+| +|+.++.|..|.++.| .++.+|..++ +|.
T Consensus 176 ~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~ 252 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLN 252 (565)
T ss_pred CHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccc
Confidence 5555568899999988876 8999988 788888899999999999 7889999999999999 9999998865 899
Q ss_pred CCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCC
Q 040255 629 KLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLK 685 (869)
Q Consensus 629 ~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~ 685 (869)
+|..|||.+ ++++++|.. +.+|..|+++| +.+..+|.+++++ +|++|-+-+|+-
T Consensus 253 ~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 253 SLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCch
Confidence 999999998 678999987 56788889988 5789999999999 899999888653
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=4e-15 Score=138.36 Aligned_cols=152 Identities=22% Similarity=0.362 Sum_probs=134.5
Q ss_pred CeeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccccc
Q 040255 511 EVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLE 584 (869)
Q Consensus 511 ~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~ 584 (869)
.+..|.+++|.+..+ ...+.+|+.|++.+|+++ .+|.+++.+++|+.|+++-|. +..+|.. ++.|+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-------~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-------ELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-------hcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 788889999998888 678899999999999987 567788899999999999987 8888887 88999
Q ss_pred hhcccccccc--cCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccC
Q 040255 585 YLTVKGTTIR--ELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNC 659 (869)
Q Consensus 585 ~L~L~~n~i~--~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c 659 (869)
.|||++|++. .+|..+..++.|+.|.|++| .++.+|..+++|++|+.|.+.+ +.+-++|.. +..|+.|++.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg- 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG- 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-
Confidence 9999999998 68999999999999999999 9999999999999999999999 456678876 45677888888
Q ss_pred CCCccccCCCCCCc
Q 040255 660 TSLEKLPAGLSSMS 673 (869)
Q Consensus 660 ~~l~~lp~~~~~l~ 673 (869)
+.+..+|..++++.
T Consensus 183 nrl~vlppel~~l~ 196 (264)
T KOG0617|consen 183 NRLTVLPPELANLD 196 (264)
T ss_pred ceeeecChhhhhhh
Confidence 57889998877653
No 18
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.43 E-value=2.1e-13 Score=130.45 Aligned_cols=113 Identities=41% Similarity=0.665 Sum_probs=96.2
Q ss_pred CCcEEEcccc-ccccCchhHHHHHHHccCCceEEecCCccCCCcchHHHHHHhhhhceeeeeeccccccccc--------
Q 040255 1 MYDVFLSFRG-EDTRDNFTSHLHHVLSLKSIKTFIDDQLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW-------- 71 (869)
Q Consensus 1 ~~dvF~sf~g-~d~r~~f~~~l~~~L~~~gi~~f~d~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w-------- 71 (869)
.|||||||++ +++++.|+.+|..+|...|+.+|.|+....|.... ++.++|++|++.|+|+|++|..|.|
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 67889999999999999999999998554444444 9999999999999999999999999
Q ss_pred --------------eEeeeccccccccccchhHHhHHHHhcchhhH--HhHHHHHHHHH
Q 040255 72 --------------FFYRVDPSHVRKQSHSFGRHFSRLRKRFPEKM--KRWKNALTEAA 114 (869)
Q Consensus 72 --------------vfy~vdp~~vr~q~g~~~~~~~~~~~~~~~~i--~~wr~al~~~~ 114 (869)
|+|+..|+++..+.+.+..++..+..+..+.. +.|+.++..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 88888888899999999999887744454333 58988887664
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=2.2e-12 Score=163.93 Aligned_cols=111 Identities=32% Similarity=0.502 Sum_probs=79.1
Q ss_pred CCCccCCCCCccEEEecCCCCCcccCcc--ccccchhcccccc-cccCCCCcCCccccceecccccccccccCccccCCC
Q 040255 552 LPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTT-IRELPESLGRLSWVKRLILSNNSNLERIPESIRHLS 628 (869)
Q Consensus 552 lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~-i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~ 628 (869)
+|.+++++++|+.|+|++|..++.+|.. +++|+.|+|++|. +..+|.. .++|+.|+|++| .+..+|.++..++
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~si~~l~ 869 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPWWIEKFS 869 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChHHHhcCC
Confidence 5556666777777777777667777665 6667777777653 3344432 356777777777 7778888888888
Q ss_pred CCCEEecCCCCCCcccCCC---CcccceeecccCCCCcccc
Q 040255 629 KLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLP 666 (869)
Q Consensus 629 ~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp 666 (869)
+|+.|+|++|+.+..+|.. +++|+.|++.+|.+|..++
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 8888888888888888875 4556677888888877654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=8.7e-13 Score=157.10 Aligned_cols=176 Identities=22% Similarity=0.382 Sum_probs=104.7
Q ss_pred CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeeecCCCcccccccccccCCCccCCCCCcc
Q 040255 485 PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPI 563 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~ 563 (869)
++|+.|++++|....+|..+. .+|+.|++++|.++.+ ..-+.+|+.|+|++|+++.+ |..+. ++|+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~L-------P~~l~--s~L~ 265 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITEL-------PERLP--SALQ 265 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccccCChhhhccccEEECcCCccCcC-------ChhHh--CCCC
Confidence 456777777766666665432 3677777777776666 22234677777777766533 32222 3566
Q ss_pred EEEecCCCCCcccCcc-ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCc
Q 040255 564 TFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQ 642 (869)
Q Consensus 564 ~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~ 642 (869)
.|+|++|. +..+|.. ..+|+.|+|++|+++.+|..+. ++|+.|+|++| .+..+|..+. ++|+.|++++|. +.
T Consensus 266 ~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~-Lt 338 (754)
T PRK15370 266 SLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENA-LT 338 (754)
T ss_pred EEECcCCc-cCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCc-cc
Confidence 77776665 5566665 4567777777777766665442 45666777766 6666665442 466666666643 44
Q ss_pred ccCCC-CcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 643 TLPEL-PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 643 ~lp~~-~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
.+|.. +++|+.|++++| .+..+|..+ .++|+.|++++|
T Consensus 339 ~LP~~l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 339 SLPASLPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRN 377 (754)
T ss_pred cCChhhcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCC
Confidence 46543 456666776664 355555533 245666666653
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=2.1e-12 Score=153.90 Aligned_cols=176 Identities=22% Similarity=0.346 Sum_probs=133.7
Q ss_pred CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeeecCCCcccccccccccCCCccCCCCCcc
Q 040255 485 PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPI 563 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~ 563 (869)
++|+.|++++|....+|..+ + ++|+.|++++|.+..+ ..-+.+|+.|++++|+++.+ |..+. ++|+
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l---~-~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~L-------P~~l~--~sL~ 286 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATL---P-DTIQEMELSINRITELPERLPSALQSLDLFHNKISCL-------PENLP--EELR 286 (754)
T ss_pred cCCCEEECCCCccccCChhh---h-ccccEEECcCCccCcCChhHhCCCCEEECcCCccCcc-------ccccC--CCCc
Confidence 58899999888777676543 3 4789999999988877 33346789999999888743 43332 4789
Q ss_pred EEEecCCCCCcccCcc-ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCc
Q 040255 564 TFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQ 642 (869)
Q Consensus 564 ~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~ 642 (869)
.|+|++|. +..+|.. ..+|+.|++++|.++.+|..+. ++|+.|++++| .+..+|..+. ++|+.|+|++|+ +.
T Consensus 287 ~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~-L~ 359 (754)
T PRK15370 287 YLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGEN-ALTSLPASLP--PELQVLDVSKNQ-IT 359 (754)
T ss_pred EEECCCCc-cccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCC-ccccCChhhc--CcccEEECCCCC-CC
Confidence 99999986 7788876 5578999999999988887653 68999999998 7888887764 689999999864 56
Q ss_pred ccCCC-CcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 643 TLPEL-PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 643 ~lp~~-~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
.+|.. +++|+.|++.+| .+..+|..+. ..|+.|++++|
T Consensus 360 ~LP~~lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 360 VLPETLPPTITTLDVSRN-ALTNLPENLP--AALQIMQASRN 398 (754)
T ss_pred cCChhhcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccC
Confidence 77764 678999999886 5677877543 35777777664
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.30 E-value=2.1e-13 Score=156.39 Aligned_cols=184 Identities=24% Similarity=0.312 Sum_probs=103.1
Q ss_pred CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCCccCCCCC
Q 040255 485 PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKT 561 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~ 561 (869)
.+|++++++.+....+|..+..+. +|..|....|.+..+ .+...+|+.|...+|.++ .+|.....+++
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~--nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-------yip~~le~~~s 311 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACA--NLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-------YIPPFLEGLKS 311 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcc--cceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-------hCCCcccccce
Confidence 345555555555555554444444 555555555555444 444555555555555544 44545556667
Q ss_pred ccEEEecCCCCCcccCcc-----------------------------ccccchhcccccccc-cCCCCcCCccccceecc
Q 040255 562 PITFEIIDCKMLERLPDE-----------------------------LENLEYLTVKGTTIR-ELPESLGRLSWVKRLIL 611 (869)
Q Consensus 562 L~~L~L~~~~~l~~lp~~-----------------------------l~~L~~L~L~~n~i~-~lP~~i~~l~~L~~L~L 611 (869)
|++|+|..|. +..+|+. ++.|+.|++.+|.++ ..-+-+.+..+|+.|+|
T Consensus 312 L~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 312 LRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 7777776665 5555543 223445555555554 22223455666777777
Q ss_pred cccccccccCcc-ccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccC
Q 040255 612 SNNSNLERIPES-IRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 612 s~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
++| .+.++|++ +.+|..|+.|+|++ ++|+.||.. .+.|++|.+++ +.+..+| .+.+++.|+++|++.
T Consensus 391 syN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 391 SYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC 461 (1081)
T ss_pred ccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc
Confidence 766 66666655 56666666777776 456666654 34445555544 3455566 556666666666654
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.25 E-value=5.6e-10 Score=140.51 Aligned_cols=266 Identities=13% Similarity=0.125 Sum_probs=164.1
Q ss_pred ccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHH
Q 040255 146 FQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 146 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
+|.....+|-|..-++.+.. ....+++.|.|++|.||||++....++. +.++|+..-. ...+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~---~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDE---SDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCc---ccCCHHHHHH
Confidence 45566778888765555432 2467899999999999999999987642 3688996321 1233344444
Q ss_pred HHHHHhh----cC--CC-------C-CC----HHHHHHHHc--cCceEEEecCCC-------------------CCcEEE
Q 040255 226 KLLSELS----KD--GN-------M-RN----IESQLNRLA--RKKVRIVFDDVT-------------------SGSRVI 266 (869)
Q Consensus 226 ~il~~l~----~~--~~-------~-~~----~~~l~~~L~--~kr~LlVLDDv~-------------------~gsrIi 266 (869)
.++..+. .. .. . .+ ...+...+. ..+++|||||+. ++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 4444442 10 00 0 11 122222332 679999999997 556888
Q ss_pred EEeCchhhhhh--c-CCCeEEEeC----CCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcC
Q 040255 267 ITTRDKQVLKN--C-WANKKYRMK----ELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCG 339 (869)
Q Consensus 267 vTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 339 (869)
||||...-... . ......++. +|+.+|+.++|...... . -..+.+.++.+.++|.|+++..++..+.+
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~---~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--P---IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--C---CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99998432211 1 112345566 99999999999765421 1 12355789999999999999998877754
Q ss_pred CCHHHHHHHHHHHhcCCCchhhhHHHh-hhccCcHHHHHHHhhcccccCCCCHHHHHHH---------Hhh--cCcc-eE
Q 040255 340 RSKEVWESAMRKLEIIPHVEIEEVLKI-SYDSLDDSQKNVFLDIACFLEGEHRDEVISI---------FDA--SKSL-IN 406 (869)
Q Consensus 340 ~~~~~w~~~l~~l~~~~~~~i~~~L~~-Sy~~L~~~~k~~fl~~a~F~~~~~~~~l~~~---------~~~--~~sL-i~ 406 (869)
.... -......+...+...+.+.+.- .++.||++.++.++..|+++ .++.+.+..+ +.. ...| +.
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~ 309 (903)
T PRK04841 232 NNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELERQGLFIQ 309 (903)
T ss_pred CCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHHCCCeeE
Confidence 3210 0111222222223456665444 48999999999999999987 4443322222 222 4445 33
Q ss_pred e-cc-CCeEEecHHHHHHhHhhhhcc
Q 040255 407 L-DL-FYRIRMHDLLRDMGREIVRKE 430 (869)
Q Consensus 407 ~-~~-~~~~~mHdll~~~~~~i~~~e 430 (869)
. ++ ...|++|++++++.+.....+
T Consensus 310 ~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 310 RMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eecCCCCEEehhHHHHHHHHHHHHhc
Confidence 3 22 347999999999998876443
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=7e-13 Score=152.17 Aligned_cols=177 Identities=27% Similarity=0.380 Sum_probs=128.7
Q ss_pred ccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---ccc--cccceeeecCCCcccccccc----
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NIC--AEKLVSLKMPCTKVEQLWDD---- 548 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~--~~~L~~L~L~~n~l~~l~~~---- 548 (869)
+..+..+.+|++|.+..|...++|+.++.+. .|+.|++..|.+.++ .+. ...|..|+.+.|++..+...
T Consensus 280 p~ri~~~~~L~~l~~~~nel~yip~~le~~~--sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 280 PLRISRITSLVSLSAAYNELEYIPPFLEGLK--SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred HHHHhhhhhHHHHHhhhhhhhhCCCcccccc--eeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 3445566666666666666666776666665 778888877777666 111 11233333344433322110
Q ss_pred ---------------cccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCCcCCcccccee
Q 040255 549 ---------------VQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPESLGRLSWVKRL 609 (869)
Q Consensus 549 ---------------~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L 609 (869)
-..+| .+.++.+|++|+|++|. +..+|+. +..|++|+||||.++.+|..+.++..|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchh-hhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 01122 56788999999999998 9999998 788999999999999999999999999999
Q ss_pred cccccccccccCccccCCCCCCEEecCCCCCCc--ccCCC-C-cccceeecccCCC
Q 040255 610 ILSNNSNLERIPESIRHLSKLTFLFISHCERLQ--TLPEL-P-CNLGLLSARNCTS 661 (869)
Q Consensus 610 ~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~--~lp~~-~-~~L~~L~l~~c~~ 661 (869)
...+| .+..+| .+.+++.|+.+|++.|+ ++ .+|+. | ++|++|++++++.
T Consensus 436 ~ahsN-~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 436 RAHSN-QLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCC-ceeech-hhhhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCcc
Confidence 99999 899999 89999999999999654 43 34544 5 7999999999875
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.10 E-value=5.9e-09 Score=118.10 Aligned_cols=225 Identities=16% Similarity=0.094 Sum_probs=140.6
Q ss_pred cCCcceeccccHHHHHHhhccC--CCCeEEEEEEecCCchHHHHHHHHHHhhcCccC--ceEEEEeehhhhccCCHHHHH
Q 040255 149 KNKGLVGVECSIEEIESLLCIG--SEGVCKLRIWGIGGISKITIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~ 224 (869)
.++.++||+.++++|...+... ....+.+.|+|++|+|||++++.+++++..... ..+++.+ ....+...+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~----~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC----QIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC----CcCCCHHHHH
Confidence 4577999999999999988432 233456789999999999999999998765542 2334431 2223456777
Q ss_pred HHHHHHhhcC-CCCC--C----HHHHHHHHc--cCceEEEecCCC---------------------CCcE--EEEEeCch
Q 040255 225 KKLLSELSKD-GNMR--N----IESQLNRLA--RKKVRIVFDDVT---------------------SGSR--VIITTRDK 272 (869)
Q Consensus 225 ~~il~~l~~~-~~~~--~----~~~l~~~L~--~kr~LlVLDDv~---------------------~gsr--IivTTR~~ 272 (869)
..++.++... .... + .+.+.+.+. +++++||||+++ ++++ +|.++.+.
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 7888887652 2211 2 344445554 456899999997 3444 56666655
Q ss_pred hhhhhcC-------CCeEEEeCCCCHHHHHHHHHHhhcC---CCCCC-ccHHHHHHHHHHHcCCCchhHHHHHhhh----
Q 040255 273 QVLKNCW-------ANKKYRMKELVYADAHKLFCQWAFG---GDHLD-ASHIELTDKAIKYAQGVPLALKVLGCYL---- 337 (869)
Q Consensus 273 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~-~~~~~~~~~i~~~~~GlPLal~~~g~~L---- 337 (869)
.+..... ....+.+++++.++..+++..++-. ..... +..+.+++......|..+.|+.++-...
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4332211 1246789999999999999877632 22222 2223333333333566777877764322
Q ss_pred -cCC---CHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhccc
Q 040255 338 -CGR---SKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIAC 384 (869)
Q Consensus 338 -~~~---~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a~ 384 (869)
.+. +.+..+.++++.. .....-.+..||.++|..+..++.
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~ 307 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVR 307 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 121 4566666666552 223455688999999888766553
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=3e-11 Score=132.14 Aligned_cols=167 Identities=23% Similarity=0.373 Sum_probs=126.9
Q ss_pred eeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccchh
Q 040255 512 VRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYL 586 (869)
Q Consensus 512 L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L 586 (869)
-...+++.|.+..+ ......|..|.|..|.+. .+|..++++..|++|+|+.|. +..+|.. .--|+.|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvl 148 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-------TIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLPLKVL 148 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce-------ecchhhhhhhHHHHhhhccch-hhcCChhhhcCcceeE
Confidence 34455666666555 223445666677777664 567788888888889988887 7788877 4457888
Q ss_pred cccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCCCccc--ceeecccCCCCcc
Q 040255 587 TVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPELPCNL--GLLSARNCTSLEK 664 (869)
Q Consensus 587 ~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~~~~L--~~L~l~~c~~l~~ 664 (869)
-+++|+++.+|..|+.+..|..||.+.| .+.++|+.++.|.+|+.|.+.. +.+..+|+.+..| ..|+++ |+++..
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfS-cNkis~ 225 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFS-CNKISY 225 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecc-cCceee
Confidence 8899999999998988888889999888 8888888888899998888887 4566677665544 456664 578888
Q ss_pred ccCCCCCCccceEEeccCCCCCCch
Q 040255 665 LPAGLSSMSSVLYVNLCNFLKLDPN 689 (869)
Q Consensus 665 lp~~~~~l~~L~~l~l~~~~~~~~~ 689 (869)
||..|.+|++|++|-|.+|+-..|.
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCCh
Confidence 9999999999999988887755543
No 27
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=6.1e-09 Score=102.38 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=82.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCcc------CceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHH-HH
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHF------EGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLN-RL 247 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~-~L 247 (869)
|++.|+|.+|+||||+++.+++++.... ...+|+ ..+..........+...+........... ...+.. ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~ 78 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDSNNSRSLADLLFDQLPESIAPI-EELLQELLE 78 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhccccchHHHHHHHhhccchhhh-HHHHHHHHH
Confidence 5789999999999999999998765543 334444 34433332222234444433333221111 111222 23
Q ss_pred ccCceEEEecCCC---------------------------CCcEEEEEeCchhh---hhhcCCCeEEEeCCCCHHHHHHH
Q 040255 248 ARKKVRIVFDDVT---------------------------SGSRVIITTRDKQV---LKNCWANKKYRMKELVYADAHKL 297 (869)
Q Consensus 248 ~~kr~LlVLDDv~---------------------------~gsrIivTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L 297 (869)
..++++||||+++ ++.++|||+|.... .........+++.+|+.++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 5789999999998 68999999998766 33333446899999999999998
Q ss_pred HHHhh
Q 040255 298 FCQWA 302 (869)
Q Consensus 298 f~~~a 302 (869)
+.++.
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 86653
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.97 E-value=5.5e-08 Score=109.00 Aligned_cols=225 Identities=18% Similarity=0.172 Sum_probs=135.0
Q ss_pred CcCCcceeccccHHHHHHhhcc--CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccC------ceEEEEeehhhhccCC
Q 040255 148 SKNKGLVGVECSIEEIESLLCI--GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFE------GSYFALNVREAEETGG 219 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~s~~~~ 219 (869)
..++.++||++++++|...|.. .......+.|+|++|+|||++++++++.+....+ ..+|+.+ ....+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~----~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC----QILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC----CCCCC
Confidence 3456799999999999998863 1233457899999999999999999997653322 2344442 22234
Q ss_pred HHHHHHHHHHHhh--cCC-CCC--C----HHHHHHHH--ccCceEEEecCCC----------------------CCc--E
Q 040255 220 IKDLQKKLLSELS--KDG-NMR--N----IESQLNRL--ARKKVRIVFDDVT----------------------SGS--R 264 (869)
Q Consensus 220 ~~~l~~~il~~l~--~~~-~~~--~----~~~l~~~L--~~kr~LlVLDDv~----------------------~gs--r 264 (869)
...+...++.++. +.. +.. . ...+.+.+ .+++++||||+++ +++ .
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 5567777777773 111 111 1 23344444 3567899999998 113 3
Q ss_pred EEEEeCchhhhhhcC-------CCeEEEeCCCCHHHHHHHHHHhhc---CCCCCCccHHHHHHHHHHHcCCCch-hHHHH
Q 040255 265 VIITTRDKQVLKNCW-------ANKKYRMKELVYADAHKLFCQWAF---GGDHLDASHIELTDKAIKYAQGVPL-ALKVL 333 (869)
Q Consensus 265 IivTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 333 (869)
+|.+|.......... ....+.+++++.++..+++..++- ......++..+.+..++....|.|- |+.++
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345554443221111 124688999999999999988763 2222233334455566777778874 33332
Q ss_pred Hhhh-----cC---CCHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhcc
Q 040255 334 GCYL-----CG---RSKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIA 383 (869)
Q Consensus 334 g~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a 383 (869)
-... .+ -+.+..+.+.+.+. .....-+...||.++|.++..++
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211 11 24455555555442 12344566789988887766554
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.96 E-value=3.2e-09 Score=110.70 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=98.2
Q ss_pred ceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHH------H--
Q 040255 153 LVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL------Q-- 224 (869)
Q Consensus 153 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l------~-- 224 (869)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+......... ..... .
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 799999999999998753 356788999999999999999999874433344444322211100 01111 1
Q ss_pred --HHHHHHhhcCCC--------CC---CHHHHHHHHc--cCceEEEecCCC--------------------------CCc
Q 040255 225 --KKLLSELSKDGN--------MR---NIESQLNRLA--RKKVRIVFDDVT--------------------------SGS 263 (869)
Q Consensus 225 --~~il~~l~~~~~--------~~---~~~~l~~~L~--~kr~LlVLDDv~--------------------------~gs 263 (869)
+.+...+..... .. ....+.+.+. +++++||+||++ ..-
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 112222211111 01 1444444443 356999999997 233
Q ss_pred EEEEEeCchhhhhh--------cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 264 RVIITTRDKQVLKN--------CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 264 rIivTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
.+|+++-...+... .+....+.+++|+.+++++++...+-.. ..-+...+..++|...+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555555544433 2233459999999999999998865333 11012345669999999999988764
No 30
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.94 E-value=3.3e-10 Score=101.84 Aligned_cols=66 Identities=30% Similarity=0.581 Sum_probs=59.4
Q ss_pred EEEccccccccCchhHHHHHHHccCCceEEecCCccCCCcchHHHHHHhhhhceeeeeeccccccccc
Q 040255 4 VFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDDQLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW 71 (869)
Q Consensus 4 vF~sf~g~d~r~~f~~~l~~~L~~~gi~~f~d~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w 71 (869)
|||||+++| +.|+.+|+..|+++|+++|.|.++..|+.+...+.++|++|+..|+++|++|..|.|
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~ 66 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPW 66 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHH
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChH
Confidence 899999999 679999999999999999999999999999999999999999999999999999999
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.85 E-value=7e-08 Score=105.28 Aligned_cols=231 Identities=17% Similarity=0.146 Sum_probs=134.9
Q ss_pred CcceeccccHHHHHHhhccC---CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHH
Q 040255 151 KGLVGVECSIEEIESLLCIG---SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKL 227 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~i 227 (869)
.+|||++..+++|..++... ......+.++|++|+|||+||+++++++...+. ... .... .....+. ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~---~~~~~l~-~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPAL---EKPGDLA-AI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchh---cCchhHH-HH
Confidence 46999999999998888631 233556889999999999999999998764431 111 1001 1111222 22
Q ss_pred HHHhhcCC-------CCCC---HHHHHHHHccCceEEEecCCC----------CCcEEEEEeCchhhhhhc--CCCeEEE
Q 040255 228 LSELSKDG-------NMRN---IESQLNRLARKKVRIVFDDVT----------SGSRVIITTRDKQVLKNC--WANKKYR 285 (869)
Q Consensus 228 l~~l~~~~-------~~~~---~~~l~~~L~~kr~LlVLDDv~----------~gsrIivTTR~~~v~~~~--~~~~~~~ 285 (869)
+..+.... .... .+.+...+.+.+..+|+++.. +..-|..|||...+.... .....++
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEE
Confidence 22222211 0011 445566677778888888764 344555677765443221 1235789
Q ss_pred eCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHHHH-HhcCCC---chhh
Q 040255 286 MKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAMRK-LEIIPH---VEIE 361 (869)
Q Consensus 286 l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~-l~~~~~---~~i~ 361 (869)
+++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+ |..+... -..... ....
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHHHHHHHH
Confidence 9999999999999988743222 2234677899999999997765555433 1111000 000000 1122
Q ss_pred hHHHhhhccCcHHHHHHHh-hcccccCC-CCHHHHHHHH
Q 040255 362 EVLKISYDSLDDSQKNVFL-DIACFLEG-EHRDEVISIF 398 (869)
Q Consensus 362 ~~L~~Sy~~L~~~~k~~fl-~~a~F~~~-~~~~~l~~~~ 398 (869)
..+...|..|++.++..+. .++.+..+ ...+.+...+
T Consensus 227 ~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~l 265 (305)
T TIGR00635 227 EMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAAL 265 (305)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHh
Confidence 2356678889988887666 44555433 3344444444
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.85 E-value=8e-10 Score=121.29 Aligned_cols=200 Identities=19% Similarity=0.158 Sum_probs=127.3
Q ss_pred ccccCCcceEEEEcCCCCcc-------ccCcCCCCCCCCeeEEecCCCCCCcc----cccc---ccceeeecCCCccccc
Q 040255 480 AFSKMPKLRFLRFYGDKNKC-------MVSHLEGVPFAEVRHLEWPQCPLKTL----NICA---EKLVSLKMPCTKVEQL 545 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~-------~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~---~~L~~L~L~~n~l~~l 545 (869)
.+...++|+.|+++++.... ++..+..+ ++|+.|++++|++... ...+ ++|++|++++|++..
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~- 122 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG--CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD- 122 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhc--CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-
Confidence 45566778888887654331 12234443 3888888888887632 2222 348888888887763
Q ss_pred ccccccCCCccCCC-CCccEEEecCCCCCc----ccCcc---ccccchhcccccccc-----cCCCCcCCccccceeccc
Q 040255 546 WDDVQRLPSSLCTF-KTPITFEIIDCKMLE----RLPDE---LENLEYLTVKGTTIR-----ELPESLGRLSWVKRLILS 612 (869)
Q Consensus 546 ~~~~~~lp~~~~~l-~~L~~L~L~~~~~l~----~lp~~---l~~L~~L~L~~n~i~-----~lP~~i~~l~~L~~L~Ls 612 (869)
.+...+..++..+ ++|+.|+|++|.... .++.. +.+|++|++++|.++ .++..+..+++|+.|+|+
T Consensus 123 -~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 201 (319)
T cd00116 123 -RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201 (319)
T ss_pred -HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEecc
Confidence 2222333345556 788999999887332 12222 457888999888877 234445556789999999
Q ss_pred cccccc-----ccCccccCCCCCCEEecCCCCCCc----c----cCCCCcccceeecccCCCC----ccccCCCCCCccc
Q 040255 613 NNSNLE-----RIPESIRHLSKLTFLFISHCERLQ----T----LPELPCNLGLLSARNCTSL----EKLPAGLSSMSSV 675 (869)
Q Consensus 613 ~n~~l~-----~lP~~i~~L~~L~~L~L~~c~~l~----~----lp~~~~~L~~L~l~~c~~l----~~lp~~~~~l~~L 675 (869)
+| .+. .++..+..+++|++|++++|+... . ++.....|+.|++.+|... ..++..+..+++|
T Consensus 202 ~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L 280 (319)
T cd00116 202 NN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL 280 (319)
T ss_pred CC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCc
Confidence 88 553 344556778889999999876432 1 1111368888998887432 2344445556788
Q ss_pred eEEeccCCC
Q 040255 676 LYVNLCNFL 684 (869)
Q Consensus 676 ~~l~l~~~~ 684 (869)
++++++.|.
T Consensus 281 ~~l~l~~N~ 289 (319)
T cd00116 281 LELDLRGNK 289 (319)
T ss_pred cEEECCCCC
Confidence 888887743
No 33
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.84 E-value=2.2e-07 Score=99.44 Aligned_cols=158 Identities=11% Similarity=0.134 Sum_probs=101.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCC----HHHHHHH---
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRN----IESQLNR--- 246 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~----~~~l~~~--- 246 (869)
..++.|+|++|+||||||+.+++.+...=-..+|+. ....+..++...+...++......+ ...+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999997653211122332 1223556677777777653322222 2223222
Q ss_pred --HccCceEEEecCCC-------------------CCc--EEEEEeCchhhhhhc----------CCCeEEEeCCCCHHH
Q 040255 247 --LARKKVRIVFDDVT-------------------SGS--RVIITTRDKQVLKNC----------WANKKYRMKELVYAD 293 (869)
Q Consensus 247 --L~~kr~LlVLDDv~-------------------~gs--rIivTTR~~~v~~~~----------~~~~~~~l~~L~~~e 293 (869)
..+++.+||+||++ .+. .|++|.... ..... .....+++++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 25788999999998 122 345555432 21111 123467899999999
Q ss_pred HHHHHHHhhcCCC--CCCccHHHHHHHHHHHcCCCchhHHHHHhhh
Q 040255 294 AHKLFCQWAFGGD--HLDASHIELTDKAIKYAQGVPLALKVLGCYL 337 (869)
Q Consensus 294 a~~Lf~~~af~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 337 (869)
..+++...+-... ....-..+..+.|++.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887653221 1122235788999999999999999988776
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.84 E-value=2.4e-10 Score=120.17 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=54.3
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCcccc-CcCCCCCCCCeeEEec-CCCCCCcc----ccccccc
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMV-SHLEGVPFAEVRHLEW-PQCPLKTL----NICAEKL 532 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~-~~l~~l~~~~L~~L~l-~~~~l~~l----~~~~~~L 532 (869)
....|.||.+++. .+++.+|+.+++||.|+|++|....+- ..+.++. +|..|-+ ++|.++.+ +..+..|
T Consensus 68 ~tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~--~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA--SLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcc---cCChhhccchhhhceecccccchhhcChHhhhhhH--hhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 3455677777654 788999999999999999987766553 4566666 4444444 44777777 4456666
Q ss_pred eeeecCCCccc
Q 040255 533 VSLKMPCTKVE 543 (869)
Q Consensus 533 ~~L~L~~n~l~ 543 (869)
+-|.+.-|++.
T Consensus 143 qrLllNan~i~ 153 (498)
T KOG4237|consen 143 QRLLLNANHIN 153 (498)
T ss_pred HHHhcChhhhc
Confidence 66666655554
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.83 E-value=5.1e-08 Score=107.22 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=140.0
Q ss_pred cCcCCcceeccccHHHHHHhhcc---CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCI---GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 223 (869)
|....+|+|++..++.+..++.. .....+.+.|+|++|+||||||+.+++.+...+. +.. ..... . ..-
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~---~-~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALE---K-PGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccccc---C-hHH
Confidence 34557899999999999887753 2334567889999999999999999998765432 111 11011 1 111
Q ss_pred HHHHHHHhhcCC-------CCCC---HHHHHHHHccCceEEEecCCC----------CCcEEEEEeCchhhhhhc--CCC
Q 040255 224 QKKLLSELSKDG-------NMRN---IESQLNRLARKKVRIVFDDVT----------SGSRVIITTRDKQVLKNC--WAN 281 (869)
Q Consensus 224 ~~~il~~l~~~~-------~~~~---~~~l~~~L~~kr~LlVLDDv~----------~gsrIivTTR~~~v~~~~--~~~ 281 (869)
...++..+.... ...+ .+.+...+.+.+..+|+|+.. +.+-|..|||...+.... ...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcC
Confidence 223333332211 0011 344556667778888888754 234456677754433221 123
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHHHHHhcCCC---c
Q 040255 282 KKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAMRKLEIIPH---V 358 (869)
Q Consensus 282 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~---~ 358 (869)
..+++++++.++..+++.+.+-.... .-..+....|++.|+|.|-.+..+...+. .|..... -..... .
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~-~~~I~~~~v~ 244 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG-DGVITKEIAD 244 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC-CCCCCHHHHH
Confidence 56899999999999999988754322 22346788999999999975555544321 1111100 000001 1
Q ss_pred hhhhHHHhhhccCcHHHHHHHh-hcccccCC-CCHHHHHHHH
Q 040255 359 EIEEVLKISYDSLDDSQKNVFL-DIACFLEG-EHRDEVISIF 398 (869)
Q Consensus 359 ~i~~~L~~Sy~~L~~~~k~~fl-~~a~F~~~-~~~~~l~~~~ 398 (869)
.....+...+..|++..+..+. .+..|..+ ...+.+...+
T Consensus 245 ~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~l 286 (328)
T PRK00080 245 KALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAAL 286 (328)
T ss_pred HHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHH
Confidence 2334456678889988888775 56666544 3455555554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=1.6e-10 Score=126.61 Aligned_cols=169 Identities=23% Similarity=0.384 Sum_probs=121.9
Q ss_pred ccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCc
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSS 555 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~ 555 (869)
|..+..+..|..|.++.|+.-.+|..+..+. .|.+|+++.|++..+ -.+.--|+.|.+++|+++ .+|..
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~--~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~-------~lp~~ 161 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLE--ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLT-------SLPEE 161 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhh--HHHHhhhccchhhcCChhhhcCcceeEEEecCccc-------cCCcc
Confidence 4445555666667777777777777776665 777777777777666 333345777888888876 45555
Q ss_pred cCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCE
Q 040255 556 LCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTF 632 (869)
Q Consensus 556 ~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~ 632 (869)
++.+..|..|+.+.|. +.++|.. +.+|+.|.+..|++..+|+.++.| .|..||+|+| ++..||-+|.+|+.|++
T Consensus 162 ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVDFRKMRHLQV 238 (722)
T ss_pred cccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchhhhhhhhhee
Confidence 6666788888888887 7777776 777888888888888888888855 4888888888 88888888888888888
Q ss_pred EecCCCCCCcccCCCCc------ccceeecccC
Q 040255 633 LFISHCERLQTLPELPC------NLGLLSARNC 659 (869)
Q Consensus 633 L~L~~c~~l~~lp~~~~------~L~~L~l~~c 659 (869)
|.|.+ |-|++-|..++ =.++|+..-|
T Consensus 239 l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 239 LQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 88886 55676665432 2455666666
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82 E-value=7.5e-08 Score=100.01 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=90.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVR 253 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~L 253 (869)
.+.+.|||++|+|||+||+++++.+..+...+.|+... .. .....+++ +.++ +.-+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~----~~---~~~~~~~~----------------~~~~-~~dl 94 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS----KS---QYFSPAVL----------------ENLE-QQDL 94 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH----Hh---hhhhHHHH----------------hhcc-cCCE
Confidence 46789999999999999999999876555566777621 00 00111111 1111 2348
Q ss_pred EEecCCC---------------------CCcEEEEEeCc----------hhhhhhcCCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 254 IVFDDVT---------------------SGSRVIITTRD----------KQVLKNCWANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 254 lVLDDv~---------------------~gsrIivTTR~----------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
|||||++ .|+.+||+|.+ +.+...+.....+++++++.++.++++.+.+
T Consensus 95 LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 95 VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 9999997 46666555444 3555555556789999999999999999998
Q ss_pred cCCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 303 FGGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 303 f~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
+...-. --++....+++.+.|-.-++..+-
T Consensus 175 ~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 175 YQRGIE--LSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 754321 224677788888887766555443
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.81 E-value=3.9e-08 Score=104.82 Aligned_cols=153 Identities=21% Similarity=0.316 Sum_probs=99.0
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHH
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSE 230 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~ 230 (869)
.+++|-+..+.++.+ ++.+...-.||++|+||||||+.+.......|...-=+ ..++.++.+.+ ..
T Consensus 30 ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i~-e~ 95 (436)
T COG2256 30 EHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREII-EE 95 (436)
T ss_pred HhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHHH-HH
Confidence 455665555555543 45677778999999999999999999877776532111 23444444432 11
Q ss_pred hhcCCCCCCHHHHHHHHccCceEEEecCCC---------------CCcEEEE--EeCchhhh---hhcCCCeEEEeCCCC
Q 040255 231 LSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------SGSRVII--TTRDKQVL---KNCWANKKYRMKELV 290 (869)
Q Consensus 231 l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------~gsrIiv--TTR~~~v~---~~~~~~~~~~l~~L~ 290 (869)
.-+.+..+++.+|.+|.|. .|.-|+| ||-++... .......++++++|+
T Consensus 96 -----------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~ 164 (436)
T COG2256 96 -----------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLS 164 (436)
T ss_pred -----------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCC
Confidence 1233445899999999997 6777776 66665321 112345799999999
Q ss_pred HHHHHHHHHHhhcCCCCC-----CccHHHHHHHHHHHcCCCch
Q 040255 291 YADAHKLFCQWAFGGDHL-----DASHIELTDKAIKYAQGVPL 328 (869)
Q Consensus 291 ~~ea~~Lf~~~af~~~~~-----~~~~~~~~~~i~~~~~GlPL 328 (869)
.++-.+++.+.+...... ..-.++..+.+++.+.|---
T Consensus 165 ~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 165 SEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 999999998844322211 11234566777888877543
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.75 E-value=7.3e-10 Score=116.55 Aligned_cols=219 Identities=13% Similarity=0.170 Sum_probs=139.0
Q ss_pred ceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCC-CcccccccccccCCCccCCCCC
Q 040255 487 LRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPC-TKVEQLWDDVQRLPSSLCTFKT 561 (869)
Q Consensus 487 Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~-n~l~~l~~~~~~lp~~~~~l~~ 561 (869)
-..++|..|....+|++...-- .+||.|++++|.++.+ +..+.+|..|-+-+ |+|+.+..+ .|.+|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l-~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~------~F~gL~s 141 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTL-HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG------AFGGLSS 141 (498)
T ss_pred ceEEEeccCCcccCChhhccch-hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh------HhhhHHH
Confidence 4467777788888887544333 4899999999998887 55677777666554 888755432 3666667
Q ss_pred ccEEEecCCCCCcccCcc----ccccchhcccccccccCCC-CcCCccccceeccccccc--------------------
Q 040255 562 PITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPE-SLGRLSWVKRLILSNNSN-------------------- 616 (869)
Q Consensus 562 L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~-~i~~l~~L~~L~Ls~n~~-------------------- 616 (869)
|+.|.+.-|. +..++.. |++|..|.+..|.+..++. ++..+.+++++.+..|..
T Consensus 142 lqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 142 LQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 7777666665 4444444 6666666777777766665 555666666666555531
Q ss_pred -----------------------------------------ccccC-ccccCCCCCCEEecCCCCCCcccCCC----Ccc
Q 040255 617 -----------------------------------------LERIP-ESIRHLSKLTFLFISHCERLQTLPEL----PCN 650 (869)
Q Consensus 617 -----------------------------------------l~~lP-~~i~~L~~L~~L~L~~c~~l~~lp~~----~~~ 650 (869)
....| ..|+.|++|+.|+|++ +.+..+.+. ...
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFEGAAE 299 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhhhcchhh
Confidence 11112 1367888888888887 445555432 567
Q ss_pred cceeecccCCCCccccC-CCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCceeeecCCCCC
Q 040255 651 LGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEI 721 (869)
Q Consensus 651 L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~i 721 (869)
++.|.+.. ++++.+.. .|.++..|+.|+|.+ |+++...+-++.+...+..+.+..|-+.....+
T Consensus 300 l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~------N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 300 LQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD------NQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred hhhhhcCc-chHHHHHHHhhhccccceeeeecC------CeeEEEecccccccceeeeeehccCcccCccch
Confidence 77777776 46776665 567788888888877 555555555666666666655544444333443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.9e-08 Score=114.01 Aligned_cols=162 Identities=27% Similarity=0.368 Sum_probs=117.4
Q ss_pred CeeEEecCCCCCCcc---ccccc-cceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---cccc
Q 040255 511 EVRHLEWPQCPLKTL---NICAE-KLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENL 583 (869)
Q Consensus 511 ~L~~L~l~~~~l~~l---~~~~~-~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L 583 (869)
.+..|.+.++++..+ ...+. +|..|++++|.+.. +|..+..+++|+.|++++|. +..+|.. +++|
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-------l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-------LPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhh-------hhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 677788888877777 33342 78888888887764 33456777788888888887 7777774 7788
Q ss_pred chhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCC---CCcccceeecccCC
Q 040255 584 EYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPE---LPCNLGLLSARNCT 660 (869)
Q Consensus 584 ~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~---~~~~L~~L~l~~c~ 660 (869)
+.|++++|.++.+|..++.+..|++|.+++| ....+|..+.+++++..|.+.+|. +..+|. .+++++.|++.+ +
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~-n 265 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSN-N 265 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCC-cceecchhhhhcccccccccCCce-eeeccchhccccccceecccc-c
Confidence 8888888888888887777777888888888 566777778888888888877643 333333 356677777776 3
Q ss_pred CCccccCCCCCCccceEEeccCCC
Q 040255 661 SLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 661 ~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
.+..++. ++.+.+|+.++++.+.
T Consensus 266 ~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 266 QISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccccc-ccccCccCEEeccCcc
Confidence 5666666 7777788888877643
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.2e-08 Score=99.86 Aligned_cols=94 Identities=22% Similarity=0.341 Sum_probs=19.6
Q ss_pred eeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccc
Q 040255 512 VRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLE 584 (869)
Q Consensus 512 L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~ 584 (869)
++.|++.+|.++.+ ...+.+|+.|+|++|.|+.+. .+..++.|++|++++|. +..+++. +++|+
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--------~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE--------GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--T--------T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCcccc--------CccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence 44444444444433 112344555555555544321 12234455555555554 4444321 44455
Q ss_pred hhcccccccccCC--CCcCCccccceeccccc
Q 040255 585 YLTVKGTTIRELP--ESLGRLSWVKRLILSNN 614 (869)
Q Consensus 585 ~L~L~~n~i~~lP--~~i~~l~~L~~L~Ls~n 614 (869)
.|+|++|.|..+- ..+..+++|+.|+|.+|
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 5555555444331 12333444444444444
No 42
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.67 E-value=1.9e-06 Score=100.08 Aligned_cols=268 Identities=14% Similarity=0.127 Sum_probs=167.2
Q ss_pred ccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHH
Q 040255 146 FQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 146 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
+|......|-|..-++.+.. ..+.|.+.|..++|.|||||+-+...+ ...=..+.|++.-. .+.+..++..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wlslde---~dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLSLDE---SDNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEeecCC---ccCCHHHHHH
Confidence 34445667777655554443 346899999999999999999999873 33445688987432 2345566666
Q ss_pred HHHHHhhcCCCCC--------------CH----HHHHHHHc--cCceEEEecCCC-------------------CCcEEE
Q 040255 226 KLLSELSKDGNMR--------------NI----ESQLNRLA--RKKVRIVFDDVT-------------------SGSRVI 266 (869)
Q Consensus 226 ~il~~l~~~~~~~--------------~~----~~l~~~L~--~kr~LlVLDDv~-------------------~gsrIi 266 (869)
.++..+....+.. +. +.+..-+. .++.++||||.. ++-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 6666665221111 12 22222222 468999999997 677899
Q ss_pred EEeCchhhhhhcC---CCeEEEeC----CCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcC
Q 040255 267 ITTRDKQVLKNCW---ANKKYRMK----ELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCG 339 (869)
Q Consensus 267 vTTR~~~v~~~~~---~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~ 339 (869)
||||...-..... .+...++. .++.+|+-++|..... . +-...-++.+.+..+|-+-|+..++=.+++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l--~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L--PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C--CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9999874332111 12233443 6899999999977641 1 122345788999999999999998877773
Q ss_pred C-CHHHHHHHHHHHhcCCCchhhh-HHHhhhccCcHHHHHHHhhcccccCCC-----------C-HHHHHHHHhhcCcce
Q 040255 340 R-SKEVWESAMRKLEIIPHVEIEE-VLKISYDSLDDSQKNVFLDIACFLEGE-----------H-RDEVISIFDASKSLI 405 (869)
Q Consensus 340 ~-~~~~w~~~l~~l~~~~~~~i~~-~L~~Sy~~L~~~~k~~fl~~a~F~~~~-----------~-~~~l~~~~~~~~sLi 405 (869)
. +.+.- +..+... .+-|.+ ...--+|.||++.|.-++-+|+++.-- + ...+.++....-.++
T Consensus 240 ~~~~~q~---~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~ 315 (894)
T COG2909 240 NTSAEQS---LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQ 315 (894)
T ss_pred CCcHHHH---hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCcee
Confidence 2 33221 1111111 111222 233457899999999999999985421 1 112222222244555
Q ss_pred Eecc-CCeEEecHHHHHHhHhhhhccc
Q 040255 406 NLDL-FYRIRMHDLLRDMGREIVRKES 431 (869)
Q Consensus 406 ~~~~-~~~~~mHdll~~~~~~i~~~e~ 431 (869)
..++ .+-|+.|.|..|+-+.-...+.
T Consensus 316 ~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 316 RLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred eecCCCceeehhHHHHHHHHhhhcccc
Confidence 5554 6789999999999888776643
No 43
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.61 E-value=1e-06 Score=107.67 Aligned_cols=275 Identities=17% Similarity=0.196 Sum_probs=166.9
Q ss_pred cceeccccHHHHHHhhccC-CCCeEEEEEEecCCchHHHHHHHHHHhhcCcc--------C-------ceEEEEeehhhh
Q 040255 152 GLVGVECSIEEIESLLCIG-SEGVCKLRIWGIGGISKITIAGAVFNKISRHF--------E-------GSYFALNVREAE 215 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--------~-------~~~~~~~~~~~s 215 (869)
.++||+.+++.|...+..- .+.-.++.+.|..|||||+|+++|...+.+++ + ...|+..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3799999999998888653 34567999999999999999999999765551 1 111111122111
Q ss_pred c------cCCHHHHHHHHHHHhhcCCCC-----------------C-C--------------HHHHHHHH-ccCceEEEe
Q 040255 216 E------TGGIKDLQKKLLSELSKDGNM-----------------R-N--------------IESQLNRL-ARKKVRIVF 256 (869)
Q Consensus 216 ~------~~~~~~l~~~il~~l~~~~~~-----------------~-~--------------~~~l~~~L-~~kr~LlVL 256 (869)
. .........+++..++..... . . ...+.... +.|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 1 011112222333333211100 0 0 11122222 456999999
Q ss_pred cCCC--------------CCc--------EEE--EEeCch--hhhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCc
Q 040255 257 DDVT--------------SGS--------RVI--ITTRDK--QVLKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDA 310 (869)
Q Consensus 257 DDv~--------------~gs--------rIi--vTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~ 310 (869)
||+. ... .+. .|.+.. .+.........+.+.+|+..+...|......... .
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---~ 237 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---L 237 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---c
Confidence 9996 111 222 222221 1111222346899999999999999877653322 2
Q ss_pred cHHHHHHHHHHHcCCCchhHHHHHhhhcCC-------CHHHHHHHHHHHhcCCC-chhhhHHHhhhccCcHHHHHHHhhc
Q 040255 311 SHIELTDKAIKYAQGVPLALKVLGCYLCGR-------SKEVWESAMRKLEIIPH-VEIEEVLKISYDSLDDSQKNVFLDI 382 (869)
Q Consensus 311 ~~~~~~~~i~~~~~GlPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~L~~Sy~~L~~~~k~~fl~~ 382 (869)
...+....|+++..|+|+.+..+-..+... +...|..-..++...+. +.+...+..-.+.||...|+++...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 234678899999999999999988888642 34556655555443321 2245568889999999999999999
Q ss_pred ccccCCCCHHHHHHHHh------------h-cCcceEecc--------CCe---EEecHHHHHHhHhhhhc
Q 040255 383 ACFLEGEHRDEVISIFD------------A-SKSLINLDL--------FYR---IRMHDLLRDMGREIVRK 429 (869)
Q Consensus 383 a~F~~~~~~~~l~~~~~------------~-~~sLi~~~~--------~~~---~~mHdll~~~~~~i~~~ 429 (869)
||+.+.++.+.+..++. + ..++|.... ... --.||++|+.|-...-+
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 99998887665555443 3 333443310 111 14688888887665433
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=8.1e-09 Score=104.81 Aligned_cols=118 Identities=21% Similarity=0.249 Sum_probs=68.8
Q ss_pred CeeEEecCCCCCCccc---cccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccccc
Q 040255 511 EVRHLEWPQCPLKTLN---ICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLE 584 (869)
Q Consensus 511 ~L~~L~l~~~~l~~l~---~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~ 584 (869)
.|..|++++|.++.++ --.+.++.|++++|.+..+. ++..|++|+.||||+|. +.++-.. +.|++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--------nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--------NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIK 355 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--------hhhhcccceEeecccch-hHhhhhhHhhhcCEe
Confidence 3444444444444441 11234555555555554221 24455566666766665 5554444 66777
Q ss_pred hhcccccccccCCCCcCCccccceecccccccccccCc--cccCCCCCCEEecCCCC
Q 040255 585 YLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPE--SIRHLSKLTFLFISHCE 639 (869)
Q Consensus 585 ~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~--~i~~L~~L~~L~L~~c~ 639 (869)
.|.|++|.|..+ ++++.|-+|..||+++| ++..+.+ +|++|+.|++|.|.+|+
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 777777776665 35667777777777777 6666643 47777777777777644
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=2e-08 Score=98.44 Aligned_cols=101 Identities=23% Similarity=0.340 Sum_probs=26.8
Q ss_pred cccceeeecCCCcccccccccccCCCccC-CCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCc-CCcc
Q 040255 529 AEKLVSLKMPCTKVEQLWDDVQRLPSSLC-TFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESL-GRLS 604 (869)
Q Consensus 529 ~~~L~~L~L~~n~l~~l~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i-~~l~ 604 (869)
+..+++|+|.+|.|+.+- .++ .+.+|+.|+|++|. +..++.. +++|+.|++++|.|+.+++.+ ..++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie--------~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE--------NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-T
T ss_pred cccccccccccccccccc--------chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCC
Confidence 345666666666665321 122 34566666666665 5555544 556666666666666554433 2455
Q ss_pred ccceecccccccccccCc--cccCCCCCCEEecCCCC
Q 040255 605 WVKRLILSNNSNLERIPE--SIRHLSKLTFLFISHCE 639 (869)
Q Consensus 605 ~L~~L~Ls~n~~l~~lP~--~i~~L~~L~~L~L~~c~ 639 (869)
+|+.|+|++| .+..+-. .+..+++|+.|+|.+|+
T Consensus 89 ~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 89 NLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 6666666665 5544432 24455555555555543
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.59 E-value=1.1e-07 Score=104.14 Aligned_cols=127 Identities=21% Similarity=0.421 Sum_probs=73.1
Q ss_pred CeeEEecCCCCCCccccccccceeeecCC-CcccccccccccCCCccCCCCCccEEEecCCCCCcccCccccccchhccc
Q 040255 511 EVRHLEWPQCPLKTLNICAEKLVSLKMPC-TKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDELENLEYLTVK 589 (869)
Q Consensus 511 ~L~~L~l~~~~l~~l~~~~~~L~~L~L~~-n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~L~ 589 (869)
+++.|++++|.++++..-+.+|++|.+.+ ++++ .+|..+ ..+|+.|++++|..+..+|.. |+.|+++
T Consensus 53 ~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLt-------sLP~~L--P~nLe~L~Ls~Cs~L~sLP~s---Le~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIESLPVLPNELTEITIENCNNLT-------TLPGSI--PEGLEKLTVCHCPEISGLPES---VRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcc-------cCCchh--hhhhhheEccCcccccccccc---cceEEeC
Confidence 67777888777777644455677777764 3333 233222 246777777777666666653 4555555
Q ss_pred ccc---cccCCCCcCCccccceecccccccc--cccCccccCC-CCCCEEecCCCCCCcccCC-CCcccceeecccC
Q 040255 590 GTT---IRELPESLGRLSWVKRLILSNNSNL--ERIPESIRHL-SKLTFLFISHCERLQTLPE-LPCNLGLLSARNC 659 (869)
Q Consensus 590 ~n~---i~~lP~~i~~l~~L~~L~Ls~n~~l--~~lP~~i~~L-~~L~~L~L~~c~~l~~lp~-~~~~L~~L~l~~c 659 (869)
++. +..+|+ +|+.|.+.+++.. ..+|. .| ++|++|++++|..+. +|+ +|.+|+.|.++.+
T Consensus 121 ~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence 544 334454 3445555433111 11111 12 578888888887654 443 5778888887664
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=8.3e-09 Score=104.75 Aligned_cols=98 Identities=26% Similarity=0.382 Sum_probs=45.7
Q ss_pred ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC---Ccccceeec
Q 040255 580 LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSA 656 (869)
Q Consensus 580 l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l 656 (869)
.+.|+.||||+|.|+++-+++.-++.++.|++|+| .+..+. ++..|++|+.|+|++ +.+.++-.+ +++++.|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeeh-hhhhcccceEeeccc-chhHhhhhhHhhhcCEeeeeh
Confidence 34455555555555555555555555555555555 444443 244555555555554 223333222 445555555
Q ss_pred ccCCCCccccCCCCCCccceEEeccC
Q 040255 657 RNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 657 ~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
.+ +.+++++ .+..|-+|..||++.
T Consensus 360 a~-N~iE~LS-GL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 360 AQ-NKIETLS-GLRKLYSLVNLDLSS 383 (490)
T ss_pred hh-hhHhhhh-hhHhhhhheeccccc
Confidence 44 2333332 233444445555444
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-08 Score=109.45 Aligned_cols=173 Identities=21% Similarity=0.326 Sum_probs=102.4
Q ss_pred cceeeccccccccccceeeecccccccCCcceEEEEcCCCCccc---cCcCCCCCCCCeeEEecCCCCCCcc-----ccc
Q 040255 457 TEAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCM---VSHLEGVPFAEVRHLEWPQCPLKTL-----NIC 528 (869)
Q Consensus 457 ~~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~---~~~l~~l~~~~L~~L~l~~~~l~~l-----~~~ 528 (869)
-++++.|.||-.... .... ......+++++.|+|+.|-...+ ..-...+| +|+.|+++.|.+... ...
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp--~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP--SLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HHhhhheeecCcccc-ccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcc--cchhcccccccccCCccccchhh
Confidence 345566666655432 1111 13456678888888877543322 12233444 777777777766554 335
Q ss_pred cccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCc--ccCcc-ccccchhcccccccccCC--CCcCCc
Q 040255 529 AEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLE--RLPDE-LENLEYLTVKGTTIRELP--ESLGRL 603 (869)
Q Consensus 529 ~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~--~lp~~-l~~L~~L~L~~n~i~~lP--~~i~~l 603 (869)
+.+|..|.|+.|.++ |..+..+ ...+++|+.|+|.+|..+. ..+.. +..|+.|+|++|++-..| .-++.|
T Consensus 196 l~~lK~L~l~~CGls--~k~V~~~---~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLS--WKDVQWI---LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhhheEEeccCCCC--HHHHHHH---HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 667777777777776 4443322 3346677777777774222 22222 677777777777776665 566777
Q ss_pred cccceeccccccccccc--Ccc-----ccCCCCCCEEecCCCC
Q 040255 604 SWVKRLILSNNSNLERI--PES-----IRHLSKLTFLFISHCE 639 (869)
Q Consensus 604 ~~L~~L~Ls~n~~l~~l--P~~-----i~~L~~L~~L~L~~c~ 639 (869)
+.|..|+++.| .+.++ |+. ...+++|++|+++.|+
T Consensus 271 ~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 271 PGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 77777777777 55553 322 3456777777777744
No 49
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.58 E-value=7.4e-09 Score=113.65 Aligned_cols=196 Identities=19% Similarity=0.171 Sum_probs=116.1
Q ss_pred cccccCCcceEEEEcCCCC-----ccccCcCCCCCCCCeeEEecCCCCCCc--c--------ccccccceeeecCCCccc
Q 040255 479 YAFSKMPKLRFLRFYGDKN-----KCMVSHLEGVPFAEVRHLEWPQCPLKT--L--------NICAEKLVSLKMPCTKVE 543 (869)
Q Consensus 479 ~~f~~l~~Lr~L~l~~~~~-----~~~~~~l~~l~~~~L~~L~l~~~~l~~--l--------~~~~~~L~~L~L~~n~l~ 543 (869)
..|..+.+|+.|.+.++.. ..++..+...+ +|+.|.+.++.+.. - ...+.+|+.|++++|.+.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~--~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP--SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC--CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 4567788899999988654 22444444444 78888888887652 0 234668888888887775
Q ss_pred ccccccccCCCccCCC---CCccEEEecCCCCCc----ccCcc---c-cccchhcccccccc-----cCCCCcCCccccc
Q 040255 544 QLWDDVQRLPSSLCTF---KTPITFEIIDCKMLE----RLPDE---L-ENLEYLTVKGTTIR-----ELPESLGRLSWVK 607 (869)
Q Consensus 544 ~l~~~~~~lp~~~~~l---~~L~~L~L~~~~~l~----~lp~~---l-~~L~~L~L~~n~i~-----~lP~~i~~l~~L~ 607 (869)
.. .+..+..+ ++|+.|++++|.... .+... + ++|+.|++++|.++ .++..+..+++|+
T Consensus 95 ~~------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~ 168 (319)
T cd00116 95 PD------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168 (319)
T ss_pred hh------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence 21 11122222 458888888886321 11111 3 67788888888776 2344555667788
Q ss_pred eeccccccccc-----ccCccccCCCCCCEEecCCCCCCc----ccC---CCCcccceeecccCCCCc----cccCCC-C
Q 040255 608 RLILSNNSNLE-----RIPESIRHLSKLTFLFISHCERLQ----TLP---ELPCNLGLLSARNCTSLE----KLPAGL-S 670 (869)
Q Consensus 608 ~L~Ls~n~~l~-----~lP~~i~~L~~L~~L~L~~c~~l~----~lp---~~~~~L~~L~l~~c~~l~----~lp~~~-~ 670 (869)
+|+|++| .++ .++..+..+++|+.|++++|.... .++ ...++|+.|++++|..-. .+...+ .
T Consensus 169 ~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~ 247 (319)
T cd00116 169 ELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS 247 (319)
T ss_pred EEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence 8888887 554 344455666788888888765321 111 123567777777764221 111111 1
Q ss_pred CCccceEEeccCC
Q 040255 671 SMSSVLYVNLCNF 683 (869)
Q Consensus 671 ~l~~L~~l~l~~~ 683 (869)
..+.|+.+++++|
T Consensus 248 ~~~~L~~L~l~~n 260 (319)
T cd00116 248 PNISLLTLSLSCN 260 (319)
T ss_pred cCCCceEEEccCC
Confidence 2356777777664
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=6.3e-08 Score=109.72 Aligned_cols=178 Identities=25% Similarity=0.341 Sum_probs=143.4
Q ss_pred ccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCC
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPS 554 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~ 554 (869)
......++.+..|.+.++....+++....+. .+|+.|++++|.+..+ ...+++|+.|+++.|++.. +|.
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~-~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~-------l~~ 180 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLK-SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-------LPK 180 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccch-hhcccccccccchhhhhhhhhccccccccccCCchhhh-------hhh
Confidence 3344566789999998888888887766652 2899999999999887 6789999999999999874 444
Q ss_pred ccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCC
Q 040255 555 SLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLT 631 (869)
Q Consensus 555 ~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~ 631 (869)
..+.++.|+.|++++|. +..+|.. +.+|++|.+++|.+.++|..+.+++++..|.+.+| .+..+|..++.+++|+
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~ 258 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLE 258 (394)
T ss_pred hhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccchhccccccc
Confidence 45578899999999998 8899985 55599999999988888889999999999999988 8888888899999999
Q ss_pred EEecCCCCCCcccCCC--CcccceeecccCCCCcccc
Q 040255 632 FLFISHCERLQTLPEL--PCNLGLLSARNCTSLEKLP 666 (869)
Q Consensus 632 ~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp 666 (869)
.|++++ +.+..++.. +.+++.|++.+......+|
T Consensus 259 ~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 259 TLDLSN-NQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eecccc-ccccccccccccCccCEEeccCccccccch
Confidence 999997 556667653 4677888887754444333
No 51
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=7.5e-07 Score=101.03 Aligned_cols=166 Identities=20% Similarity=0.249 Sum_probs=101.7
Q ss_pred CcCCcceeccccHHH---HHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHH
Q 040255 148 SKNKGLVGVECSIEE---IESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
...+++||.+..+.. +.+++.. .....+.|+|++|+||||||+.+++.....|.. +... ..+...+.
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~ir 78 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKDLR 78 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHHHH
Confidence 344668898877665 7777753 345678889999999999999999976554421 1110 11222221
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------CCcEEEEE--eCchh--hh-hhcCCCeEE
Q 040255 225 KKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------SGSRVIIT--TRDKQ--VL-KNCWANKKY 284 (869)
Q Consensus 225 ~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------~gsrIivT--TR~~~--v~-~~~~~~~~~ 284 (869)
+++.... .....+++.+|++|+++ .|..++|. |.+.. +. ........+
T Consensus 79 -~ii~~~~-----------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 79 -EVIEEAR-----------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred -HHHHHHH-----------HhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceee
Confidence 2222110 01124578899999998 45555553 34332 11 111233689
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCCCC-ccHHHHHHHHHHHcCCCchhHHHHHh
Q 040255 285 RMKELVYADAHKLFCQWAFGGDHLD-ASHIELTDKAIKYAQGVPLALKVLGC 335 (869)
Q Consensus 285 ~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal~~~g~ 335 (869)
++++++.++..+++.+.+-...... .-..+....+++.++|.|..+..+..
T Consensus 147 ~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999987653211111 22356678899999999877654433
No 52
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.54 E-value=2.7e-06 Score=99.46 Aligned_cols=224 Identities=13% Similarity=0.040 Sum_probs=127.7
Q ss_pred CcCCcceeccccHHHHHHhhcc---CCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-----cC--ceEEEEeehhhhcc
Q 040255 148 SKNKGLVGVECSIEEIESLLCI---GSEGVCKLRIWGIGGISKITIAGAVFNKISRH-----FE--GSYFALNVREAEET 217 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~s~~ 217 (869)
..++.++|||.++++|...|.. ++....++-|+|++|.|||+.++.|.+++... .+ ..+++.+.. -
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~----L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN----V 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----c
Confidence 3457899999999999988853 23334677899999999999999999866321 22 134444221 1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCC------HHHHHHHHc---cCceEEEecCCC-------------------CCcEEEE--
Q 040255 218 GGIKDLQKKLLSELSKDGNMRN------IESQLNRLA---RKKVRIVFDDVT-------------------SGSRVII-- 267 (869)
Q Consensus 218 ~~~~~l~~~il~~l~~~~~~~~------~~~l~~~L~---~kr~LlVLDDv~-------------------~gsrIiv-- 267 (869)
.....+...|..++.+..+... .+.+...+. ....+||||+|+ .+++|+|
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 3445566666666643333221 223333331 124589999998 4666654
Q ss_pred EeCch--------hhhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCC--CCCccHHHHHHHHHHHcCCCchhHHHHHhhh
Q 040255 268 TTRDK--------QVLKNCWANKKYRMKELVYADAHKLFCQWAFGGD--HLDASHIELTDKAIKYAQGVPLALKVLGCYL 337 (869)
Q Consensus 268 TTR~~--------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 337 (869)
.|.+- .+...++ ...+..++++.++-.+++..++-... ..++..+-+|+.++...|..-.||.++-...
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 33221 1222222 22466799999999999998875321 1222333444444445566667777665444
Q ss_pred cC--C---CHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhcc
Q 040255 338 CG--R---SKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIA 383 (869)
Q Consensus 338 ~~--~---~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a 383 (869)
.. . ..+.-..+..++... .+.-....||.+.|-.++.++
T Consensus 987 EikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence 21 1 223333333333221 223334678888776655443
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.9e-08 Score=106.19 Aligned_cols=168 Identities=20% Similarity=0.189 Sum_probs=122.1
Q ss_pred ccCCcceEEEEcCCCCccccC--cCCCCCCCCeeEEecCCCCCCcc------ccccccceeeecCCCcccccccccccCC
Q 040255 482 SKMPKLRFLRFYGDKNKCMVS--HLEGVPFAEVRHLEWPQCPLKTL------NICAEKLVSLKMPCTKVEQLWDDVQRLP 553 (869)
Q Consensus 482 ~~l~~Lr~L~l~~~~~~~~~~--~l~~l~~~~L~~L~l~~~~l~~l------~~~~~~L~~L~L~~n~l~~l~~~~~~lp 553 (869)
+++++||...|.+......+. -...++ +++.|+++.|-+... ...+++|+.|+++.|++...|+.....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~--~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILP--NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL- 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCC--cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-
Confidence 567889999887644333332 344454 999999999977655 557899999999999998766654332
Q ss_pred CccCCCCCccEEEecCCCCCccc-----Cccccccchhcccccc-cccCCCCcCCccccceecccccccccccC--cccc
Q 040255 554 SSLCTFKTPITFEIIDCKMLERL-----PDELENLEYLTVKGTT-IRELPESLGRLSWVKRLILSNNSNLERIP--ESIR 625 (869)
Q Consensus 554 ~~~~~l~~L~~L~L~~~~~l~~l-----p~~l~~L~~L~L~~n~-i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP--~~i~ 625 (869)
.++.|+.|.|++|. +..- -..+++|+.|+|..|. +..--.+...+..|+.|||++| ++-.+| .-++
T Consensus 195 ----~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~ 268 (505)
T KOG3207|consen 195 ----LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVG 268 (505)
T ss_pred ----hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC-cccccccccccc
Confidence 57799999999998 4321 1118899999999994 3322334455889999999999 777877 3488
Q ss_pred CCCCCCEEecCCCCCCccc--CC--------CCcccceeecccC
Q 040255 626 HLSKLTFLFISHCERLQTL--PE--------LPCNLGLLSARNC 659 (869)
Q Consensus 626 ~L~~L~~L~L~~c~~l~~l--p~--------~~~~L~~L~l~~c 659 (869)
.|+.|..|+++.|. +.++ |+ .+++|++|++..+
T Consensus 269 ~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred cccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccC
Confidence 99999999999854 3332 22 1578888888774
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.50 E-value=1.2e-07 Score=112.93 Aligned_cols=102 Identities=24% Similarity=0.314 Sum_probs=60.4
Q ss_pred ccEEEecCCCCCcccCcc---ccccchhcccccccc-cCCCCcCCccccceecccccccccccCccccCCCCCCEEecCC
Q 040255 562 PITFEIIDCKMLERLPDE---LENLEYLTVKGTTIR-ELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISH 637 (869)
Q Consensus 562 L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~ 637 (869)
++.|+|++|...+.+|.. +++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..+++|++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555666666544455554 556666666666665 5666666666666666666644446666666666666666666
Q ss_pred CCCCcccCCCCc----ccceeecccCCCCc
Q 040255 638 CERLQTLPELPC----NLGLLSARNCTSLE 663 (869)
Q Consensus 638 c~~l~~lp~~~~----~L~~L~l~~c~~l~ 663 (869)
|+..+.+|..+. ++..+++.++..+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 666666665432 23345555544443
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.47 E-value=1.7e-06 Score=86.68 Aligned_cols=181 Identities=16% Similarity=0.160 Sum_probs=97.0
Q ss_pred cCcCCcceeccccHHHHHHhhcc---CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCI---GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 223 (869)
|...+++||-+.-++.+.-++.. ..+...-+..||++|+||||||+.++++....|. +.+. .......++..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~k~~dl~~- 94 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIEKAGDLAA- 94 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC--SCHHHHH-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhhhHHHHHH-
Confidence 45568899999888887665542 2355778899999999999999999999887763 2221 00111112222
Q ss_pred HHHHHHHhhcCC------CC-CC---HHHHHHHHccCceEEEecCCC----------CCcEEEEEeCchhhhhhcC--CC
Q 040255 224 QKKLLSELSKDG------NM-RN---IESQLNRLARKKVRIVFDDVT----------SGSRVIITTRDKQVLKNCW--AN 281 (869)
Q Consensus 224 ~~~il~~l~~~~------~~-~~---~~~l~~~L~~kr~LlVLDDv~----------~gsrIivTTR~~~v~~~~~--~~ 281 (869)
++..+...+ .. .+ ++.+-..+.+-++-||+.-=. +=+-|=.|||...+..... ..
T Consensus 95 ---il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFg 171 (233)
T PF05496_consen 95 ---ILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFG 171 (233)
T ss_dssp ---HHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSS
T ss_pred ---HHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcc
Confidence 222222111 00 01 344444445444444444221 2233446888765543332 22
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhh
Q 040255 282 KKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYL 337 (869)
Q Consensus 282 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 337 (869)
-+.+++..+.+|-.++..+.|-.-. -+-..+.+.+|++++.|-|--..-+-...
T Consensus 172 i~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 172 IVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3568999999999999988774322 23346789999999999997554444333
No 56
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.45 E-value=3.2e-06 Score=87.87 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=97.3
Q ss_pred Cccee--ccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHH
Q 040255 151 KGLVG--VECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 228 (869)
Q Consensus 151 ~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il 228 (869)
++|++ .+..++++.+++.. ...+.|.|+|++|+|||+||++++++........+++.. ...... ...++
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~-~~~~~~------~~~~~ 85 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-AELAQA------DPEVL 85 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH-HHHHHh------HHHHH
Confidence 44552 34456777776542 345678899999999999999999976544444455542 111100 01111
Q ss_pred HHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCchh---------hhhhc
Q 040255 229 SELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDKQ---------VLKNC 278 (869)
Q Consensus 229 ~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~~---------v~~~~ 278 (869)
..+.. .-+|||||++ .+.++|+||+... +...+
T Consensus 86 ----------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 86 ----------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ----------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 11122 2378899996 3467899887532 12222
Q ss_pred CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhh
Q 040255 279 WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCY 336 (869)
Q Consensus 279 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 336 (869)
.....+++++++.++...++...+-.... .--.+....+++.+.|.|..+..+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 22467899999999999998775532221 122456677788888998877665433
No 57
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=2.8e-07 Score=109.77 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=55.7
Q ss_pred cchhcccccccc-cCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC---Ccccceeeccc
Q 040255 583 LEYLTVKGTTIR-ELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARN 658 (869)
Q Consensus 583 L~~L~L~~n~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~ 658 (869)
++.|+|++|.++ .+|..++.|++|+.|+|++|...+.+|..++.+++|+.|+|++|+..+.+|+. +++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455566666655 55666666666666666666333456655666666666666665555555553 34555566665
Q ss_pred CCCCccccCCCCCC-ccceEEeccCC
Q 040255 659 CTSLEKLPAGLSSM-SSVLYVNLCNF 683 (869)
Q Consensus 659 c~~l~~lp~~~~~l-~~L~~l~l~~~ 683 (869)
|...+.+|..+..+ .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 55555555544432 23334444443
No 58
>PRK08727 hypothetical protein; Validated
Probab=98.41 E-value=6e-06 Score=86.00 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=93.1
Q ss_pred Ccceecc-ccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHH
Q 040255 151 KGLVGVE-CSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLS 229 (869)
Q Consensus 151 ~~~vGr~-~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~ 229 (869)
++|++.. ..+..+..+.. + .....+.|+|..|+|||+||+++++....+.....|+.. .+ ....+..
T Consensus 19 ~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~---------~~~~~~~ 86 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA---------AAGRLRD 86 (233)
T ss_pred hhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH---------hhhhHHH
Confidence 4455444 33444443332 2 223569999999999999999999976655445566651 11 1111110
Q ss_pred HhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCch---------hhhhhcC
Q 040255 230 ELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDK---------QVLKNCW 279 (869)
Q Consensus 230 ~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~---------~v~~~~~ 279 (869)
..+.+ .+.-+|||||++ .|..||+|++.. .+.....
T Consensus 87 -------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 87 -------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA 152 (233)
T ss_pred -------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh
Confidence 11111 123489999997 567799999853 2222333
Q ss_pred CCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 040255 280 ANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 280 ~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 330 (869)
....+++++++.++-.+++.++|....- .-..+....+++.+.|-.-++
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 3468999999999999999987754321 122456677777777655443
No 59
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.37 E-value=1.2e-05 Score=82.70 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=87.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCc--eEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEG--SYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARK 250 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~k 250 (869)
....+-|+|..|.|||.|.+++++++....+. ++++. ...+...+...+... ..+.+++.++.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~~----~~~~~~~~~~~- 97 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRDG----EIEEFKDRLRS- 97 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHTT----SHHHHHHHHCT-
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHcc----cchhhhhhhhc-
Confidence 34567899999999999999999987654432 34443 233444444444331 14556666663
Q ss_pred ceEEEecCCC---------------------CCcEEEEEeCchh---------hhhhcCCCeEEEeCCCCHHHHHHHHHH
Q 040255 251 KVRIVFDDVT---------------------SGSRVIITTRDKQ---------VLKNCWANKKYRMKELVYADAHKLFCQ 300 (869)
Q Consensus 251 r~LlVLDDv~---------------------~gsrIivTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 300 (869)
-=+|++||++ .|.+||+|++... +.......-++++++++.++-.+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 3478899998 7889999996531 222333456899999999999999998
Q ss_pred hhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 301 WAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 301 ~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
.|-..... --+++++.+++.+.+..-.|.
T Consensus 178 ~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 178 KAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 88533322 224566666666655444433
No 60
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.35 E-value=1.6e-06 Score=90.76 Aligned_cols=136 Identities=16% Similarity=0.277 Sum_probs=86.9
Q ss_pred CcCCcceeccccHHH---HHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHH
Q 040255 148 SKNKGLVGVECSIEE---IESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
...+++||-+..+.+ |.+++ +.+....+.+||++|.||||||+.+...-+.+- ..||......+...++..+.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHH
Confidence 334556666554432 22223 246778888999999999999999998554432 44565322222223333333
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------CCcEEEE--EeCchhh---hhhcCCCeEE
Q 040255 225 KKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------SGSRVII--TTRDKQV---LKNCWANKKY 284 (869)
Q Consensus 225 ~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------~gsrIiv--TTR~~~v---~~~~~~~~~~ 284 (869)
++- .-...+..+|.+|.+|.|. .|.-++| ||.+... ........++
T Consensus 211 e~a--------------q~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 211 EQA--------------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVF 276 (554)
T ss_pred HHH--------------HHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhcccee
Confidence 321 1123456789999999997 6777776 7766543 2223345789
Q ss_pred EeCCCCHHHHHHHHHHh
Q 040255 285 RMKELVYADAHKLFCQW 301 (869)
Q Consensus 285 ~l~~L~~~ea~~Lf~~~ 301 (869)
.+++|+.++...++.+.
T Consensus 277 vLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 277 VLEKLPVNAVVTILMRA 293 (554)
T ss_pred EeccCCHHHHHHHHHHH
Confidence 99999999999999873
No 61
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=3.7e-07 Score=98.23 Aligned_cols=213 Identities=16% Similarity=0.235 Sum_probs=150.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCC--CHHHHHHHHcc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMR--NIESQLNRLAR 249 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~--~~~~l~~~L~~ 249 (869)
...+.|.++|.|||||||+|-.+.. +...|....|+.+.+.+++. ..+--.+...+.-....- ....+..+...
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~---~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP---ALVFPTLAGALGLHVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch---hHhHHHHHhhcccccccchHHHHHHHHHHhh
Confidence 3467899999999999999999999 88889888877766655433 222233333333222221 25567788899
Q ss_pred CceEEEecCCC-----------------CCcEEEEEeCchhhhhhcCCCeEEEeCCCCHH-HHHHHHHHhhcCCC---CC
Q 040255 250 KKVRIVFDDVT-----------------SGSRVIITTRDKQVLKNCWANKKYRMKELVYA-DAHKLFCQWAFGGD---HL 308 (869)
Q Consensus 250 kr~LlVLDDv~-----------------~gsrIivTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~---~~ 308 (869)
+|.++|+||.. +.-+|+.|+|..... ..+..+.++.|+.. ++.++|...+.... ..
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 99999999997 445778888876433 34567888888876 79999987764321 11
Q ss_pred CccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHHHH----HhcC------CCchhhhHHHhhhccCcHHHHHH
Q 040255 309 DASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAMRK----LEII------PHVEIEEVLKISYDSLDDSQKNV 378 (869)
Q Consensus 309 ~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~L~~Sy~~L~~~~k~~ 378 (869)
.........+|.+...|.|++|...++..+.....+-...+.. +... ........+..||.-|..-++-.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 2233467789999999999999999999887655443333321 2222 12346778999999999999999
Q ss_pred HhhcccccCCCCH
Q 040255 379 FLDIACFLEGEHR 391 (869)
Q Consensus 379 fl~~a~F~~~~~~ 391 (869)
|--++.|...++.
T Consensus 245 ~~rLa~~~g~f~~ 257 (414)
T COG3903 245 FGRLAVFVGGFDL 257 (414)
T ss_pred hcchhhhhhhhcc
Confidence 9999998776654
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=98.32 E-value=3.5e-05 Score=89.29 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=103.7
Q ss_pred cCcCCcceeccccHHHHHHhhccCC--CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGS--EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
|...++++|.+..+++|..|+.... ...+.+.|+|++|+||||+|+++++++. |+.. -+ + .+...... ..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~i-el-n---asd~r~~~-~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVI-EL-N---ASDQRTAD-VI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEE-EE-c---ccccccHH-HH
Confidence 3445679999999999999986421 2267899999999999999999999874 2221 11 1 12111222 22
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHc-cCceEEEecCCC--------------------CCcEEEEEeCchhhh---hhcCC
Q 040255 225 KKLLSELSKDGNMRNIESQLNRLA-RKKVRIVFDDVT--------------------SGSRVIITTRDKQVL---KNCWA 280 (869)
Q Consensus 225 ~~il~~l~~~~~~~~~~~l~~~L~-~kr~LlVLDDv~--------------------~gsrIivTTR~~~v~---~~~~~ 280 (869)
..++....... .+. .++-+||+|+++ .+..||+|+.+..-. ..-..
T Consensus 82 ~~~i~~~~~~~----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 82 ERVAGEAATSG----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred HHHHHHhhccC----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhcc
Confidence 22222211100 112 367799999997 345577776543211 11123
Q ss_pred CeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 281 NKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 281 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
...+++++++.++....+...+...... -..+....|++.++|-.-.+..
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 4678999999999998887776433322 1246778899999987665543
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.28 E-value=2.4e-05 Score=81.65 Aligned_cols=135 Identities=12% Similarity=0.097 Sum_probs=85.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCce
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKV 252 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~ 252 (869)
..+.+.|+|+.|+|||+||+++++.....-..+.|+.. .... ....+ +.+.+.. --
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~----~~~~---~~~~~----------------~~~~~~~-~d 99 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL----DKRA---WFVPE----------------VLEGMEQ-LS 99 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH----HHHh---hhhHH----------------HHHHhhh-CC
Confidence 34578899999999999999999976654344556551 1100 00011 1111111 23
Q ss_pred EEEecCCC---------------------CC-cEEEEEeCch---------hhhhhcCCCeEEEeCCCCHHHHHHHHHHh
Q 040255 253 RIVFDDVT---------------------SG-SRVIITTRDK---------QVLKNCWANKKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 253 LlVLDDv~---------------------~g-srIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 301 (869)
+|++||++ .| .++|+||+.. .+...+....+++++++++++-.+++.++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~ 179 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR 179 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence 78899996 34 3799999754 33334445578999999999999999876
Q ss_pred hcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 302 AFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 302 af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
|.... -.--+++...+++.+.|-.-++..+
T Consensus 180 a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 180 ARLRG--FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHcC--CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 64322 1223567778888887766555443
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=3.6e-05 Score=89.96 Aligned_cols=167 Identities=17% Similarity=0.126 Sum_probs=101.8
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc---------------------cCceE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH---------------------FEGSY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~ 206 (869)
...+++||.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.+... |...+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 445679999999999999887442 24456799999999999999999865321 11111
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEE
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
.+. .+...++..+. +++..... .-..++.-++|||+++ ...++|+|
T Consensus 92 EID----Aas~rgVDdIR-eLIe~a~~-----------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 92 EMD----AASNRGVDEMA-ALLERAVY-----------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred Eec----ccccccHHHHH-HHHHHHHh-----------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 111 01111222111 11111100 0012445588999998 46787887
Q ss_pred eCchhhhh-h-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHHH
Q 040255 269 TRDKQVLK-N-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVP-LALKVL 333 (869)
Q Consensus 269 TR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 333 (869)
|.+..-.. . ......+.++.++.++..+.+.+.+-.... .-..+..+.|++.++|.. -|+..+
T Consensus 156 Ttd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 156 TTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred ECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77654321 1 233468999999999999998876633221 123466778889998855 455543
No 65
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.27 E-value=3e-06 Score=94.59 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=93.1
Q ss_pred CCcceeccccHHHHHHhhccC-----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC
Q 040255 150 NKGLVGVECSIEEIESLLCIG-----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG 218 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 218 (869)
.+++.|++..+++|.+.+... -...+-|.|+|++|+|||++|++++++....|-... .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-----~------ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-----G------ 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-----h------
Confidence 356899999999998876421 122455889999999999999999998766542111 0
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCcE
Q 040255 219 GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGSR 264 (869)
Q Consensus 219 ~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gsr 264 (869)
..+......... ..-...+...-...+.+|+|||++ .+.+
T Consensus 190 --~~l~~~~~g~~~----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 190 --SELVRKYIGEGA----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred --HHHHHHhhhHHH----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 011111000000 000001111112345678888775 2446
Q ss_pred EEEEeCchhh-----hhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCC-ccHHHHHHHHHHHcCCCc
Q 040255 265 VIITTRDKQV-----LKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLD-ASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 265 IivTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlP 327 (869)
||.||..... ......+..++++.++.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 7888875432 22112356899999999999999998875543322 23 345666777654
No 66
>PRK05642 DNA replication initiation factor; Validated
Probab=98.26 E-value=2e-05 Score=82.14 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=86.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVR 253 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~L 253 (869)
...+.|+|..|+|||.||+++++.+..+-..++|+.. . ++... ...+.+.+++-. +
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~---------~~~~~-------------~~~~~~~~~~~d-~ 100 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A---------ELLDR-------------GPELLDNLEQYE-L 100 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H---------HHHhh-------------hHHHHHhhhhCC-E
Confidence 3678899999999999999999876544345666652 1 11111 012223333222 6
Q ss_pred EEecCCC---------------------CCcEEEEEeCchhh---------hhhcCCCeEEEeCCCCHHHHHHHHHHhhc
Q 040255 254 IVFDDVT---------------------SGSRVIITTRDKQV---------LKNCWANKKYRMKELVYADAHKLFCQWAF 303 (869)
Q Consensus 254 lVLDDv~---------------------~gsrIivTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 303 (869)
||+||+. .|.+||+|++...- ...+....++++++++.++-.+++..++.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 7889996 67889998875321 12222346789999999999999987764
Q ss_pred CCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 304 GGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
..... --+++...+++.+.|-.-++..+-
T Consensus 181 ~~~~~--l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 181 RRGLH--LTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HcCCC--CCHHHHHHHHHhcCCCHHHHHHHH
Confidence 43211 124677777777777665554433
No 67
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=2e-05 Score=89.81 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=96.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccC--ceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKK 251 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr 251 (869)
...+.|+|..|.|||+|++++++.+..... .++++. ...+...+...+.... ...+.+++.++ +.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~--~~~~~~~~~~~-~~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH--KEIEQFKNEIC-QN 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh--hHHHHHHHHhc-cC
Confidence 356889999999999999999997654332 233443 1334444444433210 11233444444 34
Q ss_pred eEEEecCCC---------------------CCcEEEEEeCch---------hhhhhcCCCeEEEeCCCCHHHHHHHHHHh
Q 040255 252 VRIVFDDVT---------------------SGSRVIITTRDK---------QVLKNCWANKKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 252 ~LlVLDDv~---------------------~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 301 (869)
-+|||||+. .|..||+|+... .+...+...-++++++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 588999996 666788886643 22223334457889999999999999988
Q ss_pred hcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhh
Q 040255 302 AFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCY 336 (869)
Q Consensus 302 af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~ 336 (869)
+-.......-.++....|++.+.|.|-.+..+...
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 74322111233578889999999999887665543
No 68
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.22 E-value=3.6e-05 Score=85.27 Aligned_cols=179 Identities=15% Similarity=0.088 Sum_probs=101.4
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-cCc-eEEEEeehhhhccCCHHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-FEG-SYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~s~~~~~~~l~~ 225 (869)
...++++|++..++.+..++..+ ..+.+.++|++|+||||+|+++.+.+..+ +.. ..++. ..+.... ....+..
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~~ 87 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLVE 87 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhhc
Confidence 33467899999999999988643 34467899999999999999999976543 222 22332 1111000 0000000
Q ss_pred --HHHHHhhcC-CCCC-CHHHHHHHH---------ccCceEEEecCCC------------------CCcEEEEEeCch-h
Q 040255 226 --KLLSELSKD-GNMR-NIESQLNRL---------ARKKVRIVFDDVT------------------SGSRVIITTRDK-Q 273 (869)
Q Consensus 226 --~il~~l~~~-~~~~-~~~~l~~~L---------~~kr~LlVLDDv~------------------~gsrIivTTR~~-~ 273 (869)
.+....... .... ..+.+++.+ ...+-+||+||++ ...++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000 0000 012222211 1334589999997 456788777543 2
Q ss_pred hhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 274 VLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 274 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
+... ......+++.+++.++..+.+...+-..... -..+....+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2221 1233578899999999998888866432221 2246677888888887655443
No 69
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=1.4e-06 Score=87.32 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=35.5
Q ss_pred cceeccccHHHHHHhhc-cCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 152 GLVGVECSIEEIESLLC-IGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.||||+++++++...|. ......+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999994 233557899999999999999999999987766
No 70
>PTZ00202 tuzin; Provisional
Probab=98.21 E-value=2.8e-05 Score=84.81 Aligned_cols=176 Identities=11% Similarity=0.085 Sum_probs=109.2
Q ss_pred hhcCCCcccccchhhh--HhHHHHHHHhhccc------cccCcCCcceeccccHHHHHHhhccCC-CCeEEEEEEecCCc
Q 040255 115 DLSGFDSNVIRPESKL--IEEIANDVLKRLDA------TFQSKNKGLVGVECSIEEIESLLCIGS-EGVCKLRIWGIGGI 185 (869)
Q Consensus 115 ~~~g~~~~~~~~e~~~--i~~i~~~v~~~l~~------~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGi 185 (869)
..-||.++++..+-.- ..-.++...+..++ ..|.+...|+||+.++.+|...|...+ +..+++.|.|++|+
T Consensus 218 ~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~ 297 (550)
T PTZ00202 218 SVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGC 297 (550)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCC
Confidence 3345666655443221 22334444444333 246667899999999999999997433 34568899999999
Q ss_pred hHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCC--C-HHHHHHH-----Hc-cCceEEEe
Q 040255 186 SKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMR--N-IESQLNR-----LA-RKKVRIVF 256 (869)
Q Consensus 186 GKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~--~-~~~l~~~-----L~-~kr~LlVL 256 (869)
|||||++.+..... ...++.+.+ +..+++..++.+++.+.... + ...+.+. -. +++.+||+
T Consensus 298 GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 298 GKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred CHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999997654 224554332 56889999999998533222 1 2233222 23 67777776
Q ss_pred cCCC------------------CCcEEEEEeCchhhhhhc---CCCeEEEeCCCCHHHHHHHHHH
Q 040255 257 DDVT------------------SGSRVIITTRDKQVLKNC---WANKKYRMKELVYADAHKLFCQ 300 (869)
Q Consensus 257 DDv~------------------~gsrIivTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~ 300 (869)
-==+ .-|+|++----+.+.... ..-..|.++.++.++|.+.-.+
T Consensus 368 ~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 368 KLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred EecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 4222 446666654433322111 1225789999999999876543
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=7.9e-07 Score=71.44 Aligned_cols=58 Identities=36% Similarity=0.547 Sum_probs=45.9
Q ss_pred cccchhcccccccccCCC-CcCCccccceecccccccccccCc-cccCCCCCCEEecCCCC
Q 040255 581 ENLEYLTVKGTTIRELPE-SLGRLSWVKRLILSNNSNLERIPE-SIRHLSKLTFLFISHCE 639 (869)
Q Consensus 581 ~~L~~L~L~~n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L~L~~c~ 639 (869)
++|++|++++|+++.+|. .+..+++|++|+|++| .+..+|+ .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467788888888887764 6678888888888888 7777775 47888888888888865
No 72
>PRK09087 hypothetical protein; Validated
Probab=98.20 E-value=2.8e-05 Score=80.33 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=83.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVR 253 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~L 253 (869)
.+.+.|||..|+|||+|+++.++... ..++.. ..+...+...+ .. -+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~~----------------~~--~~ 90 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANAA----------------AE--GP 90 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHhh----------------hc--Ce
Confidence 46689999999999999999887642 224431 01111121111 11 27
Q ss_pred EEecCCC------------------CCcEEEEEeCc---------hhhhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCC
Q 040255 254 IVFDDVT------------------SGSRVIITTRD---------KQVLKNCWANKKYRMKELVYADAHKLFCQWAFGGD 306 (869)
Q Consensus 254 lVLDDv~------------------~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~ 306 (869)
|++||++ .|..||+|++. +++...+....++++++++.++-.+++.+++-...
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~ 170 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ 170 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 8889996 68889999873 33444445567899999999999999998874322
Q ss_pred CCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 307 HLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 307 ~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
- .--+++...|++.+.|..-++..+
T Consensus 171 ~--~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 171 L--YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred C--CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 1 123567778888888777666543
No 73
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=1.3e-05 Score=88.71 Aligned_cols=177 Identities=13% Similarity=0.095 Sum_probs=102.5
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC-c-cCceEE-E--EeehhhhccCCHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR-H-FEGSYF-A--LNVREAEETGGIK 221 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~-F~~~~~-~--~~~~~~s~~~~~~ 221 (869)
|....+++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|.++++.+-. . ...... . .... ......
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~-- 90 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHP-- 90 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCCh--
Confidence 455678999999999998888753 22346889999999999999999986522 1 010000 0 0000 000000
Q ss_pred HHHHHHHHHh-----------hcCC----CCCCHHHHHH---HH-----ccCceEEEecCCC------------------
Q 040255 222 DLQKKLLSEL-----------SKDG----NMRNIESQLN---RL-----ARKKVRIVFDDVT------------------ 260 (869)
Q Consensus 222 ~l~~~il~~l-----------~~~~----~~~~~~~l~~---~L-----~~kr~LlVLDDv~------------------ 260 (869)
..+.+.... .... ..+.++.+++ .+ .+.+.++|+||++
T Consensus 91 -~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 -VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred -HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 000010000 0000 1112333333 22 2466789999998
Q ss_pred CCcEEEEEeCchh-hhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 261 SGSRVIITTRDKQ-VLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 261 ~gsrIivTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
.+..+|++|.+.. +... ......+.+.+++.++..+++...... .. .+....++..++|.|+....+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 3556777776653 3222 234568999999999999999876411 11 1222678999999998665543
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=7.3e-05 Score=83.34 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=99.0
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc--C-------------------ceE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF--E-------------------GSY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-------------------~~~ 206 (869)
...++++|-+.-++.+...+..+ .-...+.++|+.|+||||+|+.+++.+.... . ...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 34567999999999998888643 2345678999999999999999998764211 0 001
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEE
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
++. .+....+.. .++++..+... -..+++-++|+|+++ +..++|++
T Consensus 92 ~~~----~~~~~~v~~-ir~i~~~~~~~-----------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 92 EID----AASRTKVEE-MREILDNIYYS-----------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILA 155 (363)
T ss_pred Eec----ccccCCHHH-HHHHHHHHhcC-----------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 110 000011111 11121111100 012355689999998 34456666
Q ss_pred eCch-hhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 269 TRDK-QVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 269 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
|.+. .+... .+....+++++++.++..+.+...+-..+.. -..+.+..|++.++|.|..+.
T Consensus 156 t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 156 TTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred cCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 6543 33322 2234689999999999998887766432211 223567788999999886443
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=98.18 E-value=1.1e-05 Score=88.44 Aligned_cols=167 Identities=14% Similarity=0.146 Sum_probs=99.0
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc-CccCceEEEEeehhhhccCCHHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS-RHFEGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
|....+++|.+..++.|.+++..+ ..+-+.++|++|+||||+|+++++.+. ..|...+.--+ .+...+...+..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~vr~ 83 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDVVRN 83 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHHHHH
Confidence 344567899888888888877643 344577999999999999999999763 33332211111 122223332222
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCch-hhhhh-cCCCeEEE
Q 040255 226 KLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDK-QVLKN-CWANKKYR 285 (869)
Q Consensus 226 ~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~-~v~~~-~~~~~~~~ 285 (869)
++.......... -.++.-+++||+++ ..+++|+++... .+... ......++
T Consensus 84 -~i~~~~~~~~~~--------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 84 -KIKMFAQKKVTL--------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred -HHHHHHhccccC--------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 221111100000 01346689999998 446777766442 22111 11235789
Q ss_pred eCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 040255 286 MKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 286 l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
+++++.++..+.+...+-..+.. -..+....+++.++|-.-.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 99999999998888776432221 1245677888888886643
No 76
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.17 E-value=3.2e-05 Score=80.40 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=90.3
Q ss_pred Ccce-eccccH-HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHH
Q 040255 151 KGLV-GVECSI-EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 228 (869)
Q Consensus 151 ~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il 228 (869)
++|+ |..... ..+.++.. +....+.+.|+|..|+|||+||+++++.....=....++... . +...+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~---------~~~~~- 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-S---------PLLAF- 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-H---------hHHHH-
Confidence 4455 554443 34444433 223456788999999999999999999653322233444421 1 00000
Q ss_pred HHhhcCCCCCCHHHHHHHHccCceEEEecCCC-------------------CCcE-EEEEeCchhhhh--------hcCC
Q 040255 229 SELSKDGNMRNIESQLNRLARKKVRIVFDDVT-------------------SGSR-VIITTRDKQVLK--------NCWA 280 (869)
Q Consensus 229 ~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-------------------~gsr-IivTTR~~~v~~--------~~~~ 280 (869)
.. ....-+||+||++ .+.. +|+|++...... .+..
T Consensus 86 ----------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 86 ----------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred ----------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 00 1123478889996 3443 666666432111 2222
Q ss_pred CeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhh
Q 040255 281 NKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYL 337 (869)
Q Consensus 281 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 337 (869)
...+++++|+.++-..++.+.+-... ..-.++..+.+++...|.+..+..+-..|
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 36889999999887777765442211 11224677788888999998877666554
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=7.2e-05 Score=86.21 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=101.1
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc--CccCceEEEEeehh------------
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS--RHFEGSYFALNVRE------------ 213 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~------------ 213 (869)
...++++|-+..++.|...+..+. -...+.++|++|+||||+|+.+++.+. ..+...||.+....
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 344678999988888888886532 234568999999999999999999764 22333444431100
Q ss_pred --hhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHH-----HccCceEEEecCCC------------------CCcEEEEE
Q 040255 214 --AEETGGIKDLQKKLLSELSKDGNMRNIESQLNR-----LARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 214 --~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~-----L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
.+...++.. ...+.+. ..+++-++|+|+++ +...+|++
T Consensus 90 l~~~~~~~vd~-----------------iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 90 IDAASNNSVED-----------------VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred ecccccCCHHH-----------------HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 000111111 1112221 12456689999998 23344555
Q ss_pred eC-chhhhhhc-CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 040255 269 TR-DKQVLKNC-WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 269 TR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 330 (869)
|. ...+.... .....+++.+++.++..+.+.+.+-..... -..+....|++.++|.+--+
T Consensus 153 t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 153 TTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 54 33332222 234689999999999999998877443322 13466788999999988544
No 78
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00015 Score=84.06 Aligned_cols=165 Identities=16% Similarity=0.097 Sum_probs=101.5
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc---------------------CceE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF---------------------EGSY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~ 206 (869)
....++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.... ....
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 345679999999999999887442 246778999999999999999998654211 0111
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEE
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
.+. .+...++..+. +++..+. ..-..+++-++|+|+++ .+.++|++
T Consensus 91 EID----AAs~~~VddIR-eli~~~~-----------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 91 EID----AASRTKVEDTR-ELLDNVP-----------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred Eec----ccccCCHHHHH-HHHHHHh-----------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 111 00111222211 1111110 00123566789999998 44577777
Q ss_pred eCchh-hh-hhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 269 TRDKQ-VL-KNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 269 TR~~~-v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
|.+.. +. ........+++++++.++..+.+.+.+-.... .-..+....|++.++|-+..+.
T Consensus 155 Ttd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 155 TTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred ECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 76642 21 11134468999999999999888776643222 1224567788999999774443
No 79
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.16 E-value=1.9e-05 Score=94.43 Aligned_cols=159 Identities=23% Similarity=0.309 Sum_probs=94.2
Q ss_pred CcCCcceeccccHH---HHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHH
Q 040255 148 SKNKGLVGVECSIE---EIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 148 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
...++++|.+..+. .+.+.+.. +....+.++|++|+||||||+.+++.....|. .+.. . ..++..+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~--~~~i~di- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---V--LAGVKDL- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---h--hhhhHHH-
Confidence 34467899888774 45555543 45567789999999999999999998765552 1111 0 1112111
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHH--ccCceEEEecCCC---------------CCcEEEEE--eCchh--hhh-hcCCCe
Q 040255 225 KKLLSELSKDGNMRNIESQLNRL--ARKKVRIVFDDVT---------------SGSRVIIT--TRDKQ--VLK-NCWANK 282 (869)
Q Consensus 225 ~~il~~l~~~~~~~~~~~l~~~L--~~kr~LlVLDDv~---------------~gsrIivT--TR~~~--v~~-~~~~~~ 282 (869)
++++. ...+.+ .+++.+|||||++ .|+.++|+ |.+.. +.. ......
T Consensus 94 r~~i~------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 94 RAEVD------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred HHHHH------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhcccc
Confidence 11111 111111 2467799999997 45555553 33321 111 112245
Q ss_pred EEEeCCCCHHHHHHHHHHhhcC-----CCCCCccHHHHHHHHHHHcCCCchh
Q 040255 283 KYRMKELVYADAHKLFCQWAFG-----GDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 283 ~~~l~~L~~~ea~~Lf~~~af~-----~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
.+.+++|+.++..+++.+.+-. +.....-..+....+++.+.|.--.
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 7999999999999999876531 0111122345667888888886443
No 80
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=4.3e-06 Score=91.79 Aligned_cols=153 Identities=17% Similarity=0.220 Sum_probs=99.1
Q ss_pred ccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCC-CCcc-ccccccceeeecCCC-cccccccccccCCCccCC
Q 040255 482 SKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCP-LKTL-NICAEKLVSLKMPCT-KVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 482 ~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~-l~~l-~~~~~~L~~L~L~~n-~l~~l~~~~~~lp~~~~~ 558 (869)
..+.+++.|+++++....+| .+| .+|+.|.+.+|. +..+ ..-+.+|+.|++.+| .+. .+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP----~LP-~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-------sLP~---- 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP----VLP-NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-------GLPE---- 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC----CCC-CCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-------cccc----
Confidence 34688999999987666666 466 689999999865 5555 334679999999987 443 4554
Q ss_pred CCCccEEEecCCC--CCcccCccccccchhcccccc-c--ccCCCCcCCccccceecccccccccccCccccCCCCCCEE
Q 040255 559 FKTPITFEIIDCK--MLERLPDELENLEYLTVKGTT-I--RELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFL 633 (869)
Q Consensus 559 l~~L~~L~L~~~~--~l~~lp~~l~~L~~L~L~~n~-i--~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 633 (869)
+|+.|+++++. .++.+|. +|+.|.+.+++ . ..+|.. -.++|++|++++| ....+|..+. .+|+.|
T Consensus 113 --sLe~L~L~~n~~~~L~~LPs---sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c-~~i~LP~~LP--~SLk~L 182 (426)
T PRK15386 113 --SVRSLEIKGSATDSIKNVPN---GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGC-SNIILPEKLP--ESLQSI 182 (426)
T ss_pred --ccceEEeCCCCCcccccCcc---hHhheeccccccccccccccc--cCCcccEEEecCC-CcccCccccc--ccCcEE
Confidence 46777776543 2455554 67777775432 1 122211 1268999999999 4555665554 589999
Q ss_pred ecCCCCCC-cccC--CCCcccceeecccCCC
Q 040255 634 FISHCERL-QTLP--ELPCNLGLLSARNCTS 661 (869)
Q Consensus 634 ~L~~c~~l-~~lp--~~~~~L~~L~l~~c~~ 661 (869)
.++.|... -.++ ..|.++ .|.+.+|-.
T Consensus 183 ~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 183 TLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred EecccccccccCccccccccc-Eechhhhcc
Confidence 99875311 1122 234566 788777633
No 81
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.12 E-value=0.00014 Score=79.85 Aligned_cols=167 Identities=16% Similarity=0.096 Sum_probs=98.4
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKL 227 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~i 227 (869)
...++++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++.+........++... .+...+...+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~--~~~~~~~~~~~~~i 89 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN--ASDERGIDVIRNKI 89 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec--cccccchHHHHHHH
Confidence 34466899999999999988643 344579999999999999999999764322111222210 11111222222211
Q ss_pred HHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCch-hhhhh-cCCCeEEEeC
Q 040255 228 LSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDK-QVLKN-CWANKKYRMK 287 (869)
Q Consensus 228 l~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~-~v~~~-~~~~~~~~l~ 287 (869)
.......+ .-...+-++++|+++ +.+++|+++... .+... ......++++
T Consensus 90 -~~~~~~~~---------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 90 -KEFARTAP---------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159 (319)
T ss_pred -HHHHhcCC---------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeC
Confidence 11110000 001234588888886 446677766432 12111 1123478999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 040255 288 ELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 288 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 330 (869)
+++.++....+...+-..... -..+....+++.++|.+.-+
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 999999988888777433321 22456778889999887653
No 82
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.09 E-value=6e-05 Score=86.69 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=92.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCc--eEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEG--SYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKK 251 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr 251 (869)
...+.|+|..|+|||+||+++++++..++.. +.++. ...+..++...+... ..+.+.+.++ +.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~----~~~~~~~~~~-~~ 212 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN----TMEEFKEKYR-SV 212 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC----cHHHHHHHHh-cC
Confidence 4568899999999999999999988776533 33443 122233333333211 1344555555 34
Q ss_pred eEEEecCCC---------------------CCcEEEEEeCchh---------hhhhcCCCeEEEeCCCCHHHHHHHHHHh
Q 040255 252 VRIVFDDVT---------------------SGSRVIITTRDKQ---------VLKNCWANKKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 252 ~LlVLDDv~---------------------~gsrIivTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 301 (869)
-+|||||++ .|..||+||.... +...+.....+++++++.++-.+++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 488999996 5667888886431 2233334468999999999999999988
Q ss_pred hcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 302 AFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 302 af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+-... ..--+++...|++.+.|..-.+.
T Consensus 293 ~~~~~--~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 293 AEEEG--IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHcC--CCCCHHHHHHHHcCcCCCHHHHH
Confidence 75322 12234678888888888766544
No 83
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.08 E-value=0.0002 Score=81.36 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=90.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccC--ceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKK 251 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr 251 (869)
...+.|+|..|+|||+||+++++.+..+.. .++++. ...+..++...+... ....+.+.++. .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN----KMEEFKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC----CHHHHHHHHHh-C
Confidence 356889999999999999999998766543 234443 122233343333221 23444555543 3
Q ss_pred eEEEecCCC---------------------CCcEEEEEeCch-h--------hhhhcCCCeEEEeCCCCHHHHHHHHHHh
Q 040255 252 VRIVFDDVT---------------------SGSRVIITTRDK-Q--------VLKNCWANKKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 252 ~LlVLDDv~---------------------~gsrIivTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 301 (869)
-+|||||++ .|..||+|+... . +...+.....+++++.+.++-.+++...
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 488899996 566788887642 1 2222223357899999999999999888
Q ss_pred hcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 302 AFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 302 af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+-.... .-.+++...|++.+.|..-.+.
T Consensus 281 ~~~~~~--~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 281 AEEEGL--ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 744322 1235677888888888766544
No 84
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.08 E-value=9.4e-06 Score=88.19 Aligned_cols=84 Identities=21% Similarity=0.189 Sum_probs=58.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC-ccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCC-----------HHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRN-----------IES 242 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~-----------~~~ 242 (869)
...+|+|++|+||||||+++|+.+.. +|+.++|+..+++. ...+.++++++...+-....+.. .+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999997654 79999999966552 13677788877643332221111 111
Q ss_pred HHHH-HccCceEEEecCCC
Q 040255 243 QLNR-LARKKVRIVFDDVT 260 (869)
Q Consensus 243 l~~~-L~~kr~LlVLDDv~ 260 (869)
.+.. -.+++++|++|++.
T Consensus 248 Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHcCCCEEEEEEChH
Confidence 1111 36799999999997
No 85
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.07 E-value=2.6e-05 Score=87.62 Aligned_cols=153 Identities=15% Similarity=0.153 Sum_probs=89.7
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEe-ehhhhccC
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALN-VREAEETG 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~-~~~~s~~~ 218 (869)
+++.|++..+++|.+.+.. +-...+-|.++|++|+|||++|++++++....| +.. ..+....+
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~~~~l~~~~ 205 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVGSELVQKF 205 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEeehHHHhHhh
Confidence 5688999999999886632 113355688999999999999999999865442 221 11110000
Q ss_pred --CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CC
Q 040255 219 --GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SG 262 (869)
Q Consensus 219 --~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~g 262 (869)
......+.++... -...+.+|+|||++ .+
T Consensus 206 ~g~~~~~i~~~f~~a---------------~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 206 IGEGARLVRELFELA---------------REKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred ccchHHHHHHHHHHH---------------HhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 0111222222111 12344566666665 23
Q ss_pred cEEEEEeCchhhhhh-----cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHHcCCCc
Q 040255 263 SRVIITTRDKQVLKN-----CWANKKYRMKELVYADAHKLFCQWAFGGDHL-DASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 263 srIivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlP 327 (869)
.+||.||.....+.. ...+..++++.++.++..++|..++.+.... ..++ ..+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 457777765433221 1234679999999999999999887543322 2233 45555666643
No 86
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.06 E-value=2.4e-05 Score=74.54 Aligned_cols=54 Identities=28% Similarity=0.290 Sum_probs=40.3
Q ss_pred eeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 154 VGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 154 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.+...-....++.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 47788888888887642 3467889999999999999999997753323344443
No 87
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=9e-05 Score=84.46 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=91.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccC--ceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKK 251 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr 251 (869)
...+.|+|.+|+|||+||+++++.+..... .+.|+. ...+..++...+... ....+++..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~----~~~~f~~~~~~~~ 195 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG----KLNEFREKYRKKV 195 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc----cHHHHHHHHHhcC
Confidence 445899999999999999999998766543 244443 123344444443221 1334455555456
Q ss_pred eEEEecCCC---------------------CCcEEEEEeC-chhhh--------hhcCCCeEEEeCCCCHHHHHHHHHHh
Q 040255 252 VRIVFDDVT---------------------SGSRVIITTR-DKQVL--------KNCWANKKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 252 ~LlVLDDv~---------------------~gsrIivTTR-~~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 301 (869)
-+|++||++ .|..||+||. ...-+ ..+...-++++++++.+.-.+++.+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 689999996 4667888885 32221 22233457899999999999999888
Q ss_pred hcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 302 AFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 302 af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+-..... --.++...|++.+.|.--.|.
T Consensus 276 ~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 276 LEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHhcCCC--CCHHHHHHHHhccccCHHHHH
Confidence 7432221 224677888888887655444
No 88
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=5.6e-05 Score=90.15 Aligned_cols=169 Identities=13% Similarity=0.096 Sum_probs=102.2
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-c-Cc-eEEEEe--------------
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-F-EG-SYFALN-------------- 210 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~-------------- 210 (869)
....++||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... . .. -|..+.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 34567999999999998888643 223456899999999999999999976432 1 00 011100
Q ss_pred -ehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCc
Q 040255 211 -VREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRD 271 (869)
Q Consensus 211 -~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~ 271 (869)
+. .....++..+ +++...+. ..-..+++-++|||+++ ...++|++|.+
T Consensus 92 Eid-Aas~~kVDdI-ReLie~v~-----------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 92 EVD-AASRTKVDDT-RELLDNVQ-----------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred Eec-cccccCHHHH-HHHHHHHH-----------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 00 0001122222 22222211 01124677899999998 34566655544
Q ss_pred -hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 272 -KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 272 -~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
..+... ......|++++|+.++..+.+.+.+-... ..-..+....|++.++|.|--+..
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 444322 22347899999999999998877653321 122345678899999998864433
No 89
>PF13173 AAA_14: AAA domain
Probab=98.04 E-value=3.5e-05 Score=72.28 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=65.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRI 254 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~Ll 254 (869)
+++.|.|+.|+|||||+++++++.. .-...+++...... ...... .. ..+.+.+....++.+|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~-----~~~~~~--~~---------~~~~~~~~~~~~~~~i 65 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR-----DRRLAD--PD---------LLEYFLELIKPGKKYI 65 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH-----HHHHhh--hh---------hHHHHHHhhccCCcEE
Confidence 6789999999999999999998765 33345555421110 000000 00 0223333334477899
Q ss_pred EecCCC----------------CCcEEEEEeCchhhhhhc------CCCeEEEeCCCCHHHH
Q 040255 255 VFDDVT----------------SGSRVIITTRDKQVLKNC------WANKKYRMKELVYADA 294 (869)
Q Consensus 255 VLDDv~----------------~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~ea 294 (869)
+||++. +..+|++|+.....+..- |....++|.+|+..|-
T Consensus 66 ~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 66 FIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 999997 358999999987666331 2335689999998874
No 90
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=5.3e-05 Score=82.84 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=99.7
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc------CccCceEEEEeehhhhccCCHHHHH
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS------RHFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
++++|-+..++++...+..+ .-.....++|+.|+||||+|+++++.+. .+.|...|... ......+..+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~i~v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKSIGVDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCCCCHHHHH
Confidence 45789888888898888643 2345678999999999999999999652 23444444321 11122333322
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCchhhh-hh-cCCCeEE
Q 040255 225 KKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDKQVL-KN-CWANKKY 284 (869)
Q Consensus 225 ~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~~v~-~~-~~~~~~~ 284 (869)
. +...+.... ..+++-++|+|+++ +++.+|++|.+.+.+ .. ......+
T Consensus 80 ~-~~~~~~~~p-----------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 80 N-IIEEVNKKP-----------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred H-HHHHHhcCc-----------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 2 222221110 12455577777776 578888888765432 11 1234689
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 285 RMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 285 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
++.+++.++....+.+.. .+ ...+.++.++.+++|.|..+...
T Consensus 148 ~~~~~~~~~~~~~l~~~~-~~-----~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKY-ND-----IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eCCCcCHHHHHHHHHHHh-cC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988776543 11 11344678899999988655433
No 91
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.02 E-value=1.7e-05 Score=74.58 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=56.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCc-----cCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCC-CC----HHHH
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRH-----FEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNM-RN----IESQ 243 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~-~~----~~~l 243 (869)
-+.+.|+|.+|+|||++++++.+..... -...+|+. .........+...++..+...... .. .+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4678999999999999999999976543 23445665 333447889999999999855444 22 4555
Q ss_pred HHHHccCc-eEEEecCCC
Q 040255 244 LNRLARKK-VRIVFDDVT 260 (869)
Q Consensus 244 ~~~L~~kr-~LlVLDDv~ 260 (869)
.+.+...+ .+||+||++
T Consensus 80 ~~~l~~~~~~~lviDe~~ 97 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEAD 97 (131)
T ss_dssp HHHHHHCTEEEEEEETTH
T ss_pred HHHHHhcCCeEEEEeChH
Confidence 56665554 599999985
No 92
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=3.6e-06 Score=67.60 Aligned_cols=54 Identities=28% Similarity=0.494 Sum_probs=42.4
Q ss_pred CCccEEEecCCCCCcccCcc----ccccchhcccccccccCC-CCcCCccccceeccccc
Q 040255 560 KTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELP-ESLGRLSWVKRLILSNN 614 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP-~~i~~l~~L~~L~Ls~n 614 (869)
++|++|++++|. +..+|.. +++|++|++++|.++.+| ..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 367777888775 7777764 778888888888888774 57788999999999988
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00014 Score=84.96 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=99.5
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc---------------------Cce
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF---------------------EGS 205 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 205 (869)
|....++||.+..++.|..++..+ .-...+.++|+.|+||||+|+.+.+.+...- ...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 344567999999999999988743 2235688999999999999999988653211 000
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEE
Q 040255 206 YFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVII 267 (869)
Q Consensus 206 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIiv 267 (869)
..+. .+...++..+ ++++.... ..-..+++-++|+|+++ ...++|+
T Consensus 91 lEid----aAs~~gVd~I-Relle~a~-----------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 91 LEID----AASNTGIDNI-REVLENAQ-----------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred EEEe----ccccCCHHHH-HHHHHHHH-----------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 1111 0111122111 11111110 00012466789999998 3456777
Q ss_pred EeCchh-hhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 268 TTRDKQ-VLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 268 TTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+|.+.. +... .+....++++.++.++..+.+.+.+-..+.. -..+....|++.++|.+.-+.
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHH
Confidence 765542 2211 1233568889999999988887766432221 224567889999998875443
No 94
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=3.7e-07 Score=103.05 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=37.1
Q ss_pred CCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecC
Q 040255 559 FKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFIS 636 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~ 636 (869)
++.|+.|+|+.|+ +.+.-.. ++.|++|||++|.+..+|.--..-..|+.|+|++| .+++|- +|.+|.+|+.|||+
T Consensus 186 l~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~-gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLR-GIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhh-hHHhhhhhhccchh
Confidence 3455555555554 3322222 45555555555555555431111112555555555 555553 45555555555555
Q ss_pred C
Q 040255 637 H 637 (869)
Q Consensus 637 ~ 637 (869)
+
T Consensus 263 y 263 (1096)
T KOG1859|consen 263 Y 263 (1096)
T ss_pred H
Confidence 5
No 95
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=6.5e-05 Score=86.74 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=99.0
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-----c--------------------
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-----F-------------------- 202 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-------------------- 202 (869)
...+++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.+... -
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 345679999999999998886442 23567899999999999999999865421 0
Q ss_pred -CceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCc
Q 040255 203 -EGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGS 263 (869)
Q Consensus 203 -~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gs 263 (869)
...+.+. .....++..+.+ ++..+. ..-..++.-++|+|+++ .+.
T Consensus 92 hpDviEId----Aas~~gVDdIRe-Lie~~~-----------~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v 155 (700)
T PRK12323 92 FVDYIEMD----AASNRGVDEMAQ-LLDKAV-----------YAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHV 155 (700)
T ss_pred CCcceEec----ccccCCHHHHHH-HHHHHH-----------hchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCc
Confidence 0001111 000111211111 111110 00113556689999998 345
Q ss_pred EEEE-EeCchhhhhhc-CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 264 RVII-TTRDKQVLKNC-WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 264 rIiv-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
++|+ ||....+.... ..+..+.++.++.++..+.+.+.+-..... ...+..+.|++.++|.|.-...
T Consensus 156 ~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 156 KFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred eEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 5555 44444443221 234689999999999999887765322211 1234567889999998864443
No 96
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00025 Score=78.41 Aligned_cols=226 Identities=18% Similarity=0.220 Sum_probs=132.9
Q ss_pred CcCCcceeccccHHHHHHhhcc--CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCc--eEEEEeehhhhccCCHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCI--GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEG--SYFALNVREAEETGGIKDL 223 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l 223 (869)
..++.+.+|+.+++++...|.. ......-+.|+|.+|.|||+.++.+.+++...... .+++.+. .......+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~----~~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL----ELRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee----eCCCHHHH
Confidence 3445599999999999987753 11222338899999999999999999987665433 4666532 23456677
Q ss_pred HHHHHHHhhcCCCC-CC----HHHHHHHHc--cCceEEEecCCC-------------------CCcEEE--EEeCchhhh
Q 040255 224 QKKLLSELSKDGNM-RN----IESQLNRLA--RKKVRIVFDDVT-------------------SGSRVI--ITTRDKQVL 275 (869)
Q Consensus 224 ~~~il~~l~~~~~~-~~----~~~l~~~L~--~kr~LlVLDDv~-------------------~gsrIi--vTTR~~~v~ 275 (869)
..+++..+...... .. .+.+.+.+. ++.+++|||+++ ..++|+ ..+-+-...
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence 78888877522111 11 455555554 578999999998 234443 233333222
Q ss_pred h--------hcCCCeEEEeCCCCHHHHHHHHHHhh---cCCCCCCccHHHHHHHHHHHcC-CCchhHHHHHhh--hcC--
Q 040255 276 K--------NCWANKKYRMKELVYADAHKLFCQWA---FGGDHLDASHIELTDKAIKYAQ-GVPLALKVLGCY--LCG-- 339 (869)
Q Consensus 276 ~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~~~-GlPLal~~~g~~--L~~-- 339 (869)
. ..+. ..+..++-+.+|-.+.+..++ |......++..+++..++..-+ .--.|+..+-.. ++.
T Consensus 170 ~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 170 DYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE 248 (366)
T ss_pred HHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence 2 2222 236788888899888888775 4444444555555555555555 444555544332 221
Q ss_pred -C---CHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhcccc
Q 040255 340 -R---SKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIACF 385 (869)
Q Consensus 340 -~---~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a~F 385 (869)
. +.+.=..+....+ ...+.-....|+.++|-.++.++.-
T Consensus 249 ~~~~v~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 249 GSRKVSEDHVREAQEEIE-------RDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred CCCCcCHHHHHHHHHHhh-------HHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 1 1121111111111 1233334778888887776655544
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00017 Score=83.36 Aligned_cols=168 Identities=15% Similarity=0.099 Sum_probs=100.1
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc---------------------cCceE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH---------------------FEGSY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~ 206 (869)
...++++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... |....
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34567999999999999888643 223557899999999999999999865421 11111
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEE-E
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVI-I 267 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIi-v 267 (869)
.+. .....++..+ ++++..+.. .-..+++-++|+|+++ ...++| +
T Consensus 92 eid----aas~~gvd~i-r~ii~~~~~-----------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 92 EID----AASRTGVEET-KEILDNIQY-----------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred Eee----cccccCHHHH-HHHHHHHHh-----------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 111 1111222222 122221110 0123567799999998 344555 4
Q ss_pred EeCchhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHHHH
Q 040255 268 TTRDKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVP-LALKVLG 334 (869)
Q Consensus 268 TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g 334 (869)
||....+... ......+++++++.++..+.+.+.+-..+. .-..+....|++.++|-+ .|+..+-
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5543434322 233578999999999988887765432221 223455678889999865 4444443
No 98
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00019 Score=82.06 Aligned_cols=171 Identities=18% Similarity=0.104 Sum_probs=99.5
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc----cC-----------------ce
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH----FE-----------------GS 205 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~ 205 (869)
|...+++||.+..++.|...+..+. -...+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3445679999888788877776432 22457899999999999999999865321 10 11
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-----------------CCcEE-EE
Q 040255 206 YFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-----------------SGSRV-II 267 (869)
Q Consensus 206 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-----------------~gsrI-iv 267 (869)
..+. .+...++..+. ++...... .-..+++-++|+|+++ ++..+ |+
T Consensus 89 ~el~----aa~~~gid~iR-~i~~~~~~-----------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 89 IELD----AASNRGIDEIR-KIRDAVGY-----------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEEe----CcccCCHHHHH-HHHHHHhh-----------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1111 11122233222 22221110 0123456799999997 34333 33
Q ss_pred EeCc-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcC-CCchhHHHHHhh
Q 040255 268 TTRD-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQ-GVPLALKVLGCY 336 (869)
Q Consensus 268 TTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~-GlPLal~~~g~~ 336 (869)
+|.+ ..+... ......+++.+++.++....+...+...... -..+....|++.++ +++.|+..+-..
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4433 333222 1234689999999999988888776432221 12456677888775 456776666543
No 99
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.92 E-value=2.2e-05 Score=81.99 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=58.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC-ccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCC-----------HH
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRN-----------IE 241 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~-----------~~ 241 (869)
-..++|.|++|+|||||++.+|+.+.. +|+..+|+..+++- ..++.++++.+...+-....... .+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999997644 79999999854431 25788888888443331111111 11
Q ss_pred HHHHH-HccCceEEEecCCC
Q 040255 242 SQLNR-LARKKVRIVFDDVT 260 (869)
Q Consensus 242 ~l~~~-L~~kr~LlVLDDv~ 260 (869)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22221 35799999999995
No 100
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00018 Score=81.01 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=97.5
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccC---ceEEEEeehhhhccCCHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFE---GSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~~~l 223 (869)
|...+++||-+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+...-. ..|..+.. -..+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s--------C~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS--------CLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH--------HHHH
Confidence 3445679999988898988887432 1245789999999999999999997643210 01111100 0000
Q ss_pred HHHHHHHhhcCC--CCCC---HHHHHHH-----HccCceEEEecCCC-----------------C-CcEEE-EEeCchhh
Q 040255 224 QKKLLSELSKDG--NMRN---IESQLNR-----LARKKVRIVFDDVT-----------------S-GSRVI-ITTRDKQV 274 (869)
Q Consensus 224 ~~~il~~l~~~~--~~~~---~~~l~~~-----L~~kr~LlVLDDv~-----------------~-gsrIi-vTTR~~~v 274 (869)
.......+..-+ .... ...+.+. ..++.-++|+|+++ + ...+| .||....+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 000000000000 0000 1111111 23566799999998 2 33334 44443444
Q ss_pred hhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 040255 275 LKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 275 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
... ......|.+.+++.++..+.+.+.+-..+. .-..+....|++.++|.+.-
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHH
Confidence 322 223467999999999998888776633221 12345678899999998843
No 101
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00023 Score=80.94 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=84.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVR 253 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~L 253 (869)
...+.|+|+.|+|||+||+++++.+...-..+.++. ...+...+...+... ..+.++...+ ..-+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~----~~~~f~~~~~-~~dv 205 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG----EMQRFRQFYR-NVDA 205 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc----hHHHHHHHcc-cCCE
Confidence 356889999999999999999998765433445554 122333333333221 1233444443 3448
Q ss_pred EEecCCC---------------------CCcEEEEEeCch---------hhhhhcCCCeEEEeCCCCHHHHHHHHHHhhc
Q 040255 254 IVFDDVT---------------------SGSRVIITTRDK---------QVLKNCWANKKYRMKELVYADAHKLFCQWAF 303 (869)
Q Consensus 254 lVLDDv~---------------------~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 303 (869)
|++||+. .|..||+||... .+...+.....+++.+++.++-.+++.+++-
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 8889996 567788888542 2222333446889999999999999988774
Q ss_pred CCCCCCccHHHHHHHHHHHcCCC
Q 040255 304 GGDHLDASHIELTDKAIKYAQGV 326 (869)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~~~~Gl 326 (869)
.... .--+++...+++.+.+.
T Consensus 286 ~~~~--~l~~evl~~la~~~~~d 306 (445)
T PRK12422 286 ALSI--RIEETALDFLIEALSSN 306 (445)
T ss_pred HcCC--CCCHHHHHHHHHhcCCC
Confidence 3221 11235555566665543
No 102
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.90 E-value=6.2e-06 Score=100.67 Aligned_cols=99 Identities=25% Similarity=0.403 Sum_probs=85.6
Q ss_pred CCCccEEEecCCCC-CcccCcc----ccccchhccccc-ccccCCCCcCCccccceecccccccccccCccccCCCCCCE
Q 040255 559 FKTPITFEIIDCKM-LERLPDE----LENLEYLTVKGT-TIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTF 632 (869)
Q Consensus 559 l~~L~~L~L~~~~~-l~~lp~~----l~~L~~L~L~~n-~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~ 632 (869)
.+.|++|-+.+|.. +..++.. |+.|+.|||++| .+.++|++|+.|-+|++|+|+++ .+..+|.++++|.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhe
Confidence 34799999999873 6666663 899999999976 56799999999999999999999 99999999999999999
Q ss_pred EecCCCCCCcccCCC---Ccccceeeccc
Q 040255 633 LFISHCERLQTLPEL---PCNLGLLSARN 658 (869)
Q Consensus 633 L~L~~c~~l~~lp~~---~~~L~~L~l~~ 658 (869)
|++..+..+..+|.. +++|++|.+..
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eccccccccccccchhhhcccccEEEeec
Confidence 999998888888765 67888887654
No 103
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=1.2e-06 Score=91.79 Aligned_cols=244 Identities=17% Similarity=0.141 Sum_probs=141.4
Q ss_pred CCcceecchhhHHHHHhhcCCcceeeccccccccccce-eeecccccccCCcceEEEEcCCCCc----cccC-------c
Q 040255 436 GKRNRLWHHKDIYQVLKKNTGTEAIEGISLDMNKVNRE-IHMNSYAFSKMPKLRFLRFYGDKNK----CMVS-------H 503 (869)
Q Consensus 436 ~~~~~l~~~~~~~~vl~~~~~~~~v~~i~l~~~~~~~~-~~~~~~~f~~l~~Lr~L~l~~~~~~----~~~~-------~ 503 (869)
||+-.+-..+|.-.|..-......+..|.|+-+....+ ...-.+.+.+.++|+.-++++-..+ .+|+ .
T Consensus 8 gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~a 87 (382)
T KOG1909|consen 8 GKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKA 87 (382)
T ss_pred CeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHH
Confidence 44444444445555544444445555555544332110 1223345677788888888762222 2232 3
Q ss_pred CCCCCCCCeeEEecCCCCCCcc--------ccccccceeeecCCCccccccccc-cc------CCCccCCCCCccEEEec
Q 040255 504 LEGVPFAEVRHLEWPQCPLKTL--------NICAEKLVSLKMPCTKVEQLWDDV-QR------LPSSLCTFKTPITFEII 568 (869)
Q Consensus 504 l~~l~~~~L~~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~l~~~~-~~------lp~~~~~l~~L~~L~L~ 568 (869)
+...| .|++|++++|.+..- ..+...|++|.|.+|.+...-.+. +. ..+-+.+-+.|+++...
T Consensus 88 L~~~~--~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 88 LLGCP--KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HhcCC--ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 33444 888888888865321 445778888888888775432211 00 11234455678888888
Q ss_pred CCCCCcccCcc--------ccccchhccccccccc-----CCCCcCCccccceecccccccccc-----cCccccCCCCC
Q 040255 569 DCKMLERLPDE--------LENLEYLTVKGTTIRE-----LPESLGRLSWVKRLILSNNSNLER-----IPESIRHLSKL 630 (869)
Q Consensus 569 ~~~~l~~lp~~--------l~~L~~L~L~~n~i~~-----lP~~i~~l~~L~~L~Ls~n~~l~~-----lP~~i~~L~~L 630 (869)
.|+ +..-+.. .+.|+.+.++.|.|.. +-..+..+++|+.|||.+| .++. +-..+..+++|
T Consensus 166 rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 166 RNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred ccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchh
Confidence 887 6666654 5577888888887651 2335567888888888888 5543 23345667788
Q ss_pred CEEecCCCCCCc--------ccCCCCcccceeecccCCC----CccccCCCCCCccceEEeccCC
Q 040255 631 TFLFISHCERLQ--------TLPELPCNLGLLSARNCTS----LEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 631 ~~L~L~~c~~l~--------~lp~~~~~L~~L~l~~c~~----l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
+.|++++|..-. .+-+..++|+.|.+.+|.- ...+..++...+.|..|+++.|
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 888888886421 1223356777777776543 1122234445667777777664
No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00027 Score=81.16 Aligned_cols=169 Identities=16% Similarity=0.165 Sum_probs=99.8
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccC-------ceEEEEe---------
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFE-------GSYFALN--------- 210 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~--------- 210 (869)
|....++||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+...-. ..|..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 344567899999888888766543 22357889999999999999999996532110 0011110
Q ss_pred ---ehh--hhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEE-
Q 040255 211 ---VRE--AEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVI- 266 (869)
Q Consensus 211 ---~~~--~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIi- 266 (869)
+-+ .....++..+.. ++..... .-..+++-++|+|+++ +...+|
T Consensus 96 h~Dv~eidaas~~~vd~Ir~-iie~a~~-----------~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRR-IIESAEY-----------KPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred CCcEEEeeccCCCCHHHHHH-HHHHHHh-----------ccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 000 001112222221 1111100 0123567789999998 334444
Q ss_pred EEeCchhhhhhc-CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 040255 267 ITTRDKQVLKNC-WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 267 vTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 330 (869)
+||+...+.... .....+++.+++.++..+.+...+-..... -..+....|++.++|.+.-+
T Consensus 164 aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 164 ATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 455555554322 234679999999999999998887433321 12355677889999877443
No 105
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.88 E-value=5.2e-05 Score=85.40 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=81.3
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC-
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG- 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~- 218 (869)
.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|++++++....|-. +.. .+....+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~~-seL~~k~~ 258 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VVG-SELIQKYL 258 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Eec-chhhhhhc
Confidence 5678999999999887642 11234567899999999999999999987665421 110 0010000
Q ss_pred -CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCc
Q 040255 219 -GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGS 263 (869)
Q Consensus 219 -~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gs 263 (869)
......+.++... ..+.+.+|+||+++ .+-
T Consensus 259 Ge~~~~vr~lF~~A---------------~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 259 GDGPKLVRELFRVA---------------EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred chHHHHHHHHHHHH---------------HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 0111222222111 12334455555543 244
Q ss_pred EEEEEeCchhhhhhc-----CCCeEEEeCCCCHHHHHHHHHHhhcC
Q 040255 264 RVIITTRDKQVLKNC-----WANKKYRMKELVYADAHKLFCQWAFG 304 (869)
Q Consensus 264 rIivTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~ 304 (869)
+||+||.....+... ..+..++++..+.++..++|..++.+
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 678888755443321 23567899999999999999987643
No 106
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00019 Score=84.32 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=100.4
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc---------------------Cce
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF---------------------EGS 205 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 205 (869)
|....++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+.... ...
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 3445679999999999988886432 234578999999999999999998654321 001
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEE
Q 040255 206 YFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVII 267 (869)
Q Consensus 206 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIiv 267 (869)
..+. .....++..+ ++++..+. ..-..+++-++|+|+++ ...++|.
T Consensus 91 ieid----aas~~~Vddi-R~li~~~~-----------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 91 IEID----AASRTKVEDT-RELLDNVQ-----------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 (647)
T ss_pred eeec----ccccCCHHHH-HHHHHHHH-----------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 1111 0001122221 12222110 01124567799999998 3445555
Q ss_pred EeCc-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 268 TTRD-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 268 TTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
+|.+ ..+... ......|.+++|+.++..+.+.+.+-.... ....+....|++.++|.+--...
T Consensus 155 ~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred ecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 4444 444322 223578999999999999888776532221 12235567889999997764433
No 107
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=0.00016 Score=74.11 Aligned_cols=118 Identities=12% Similarity=0.013 Sum_probs=74.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRI 254 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~Ll 254 (869)
+.+-|||++|+|||+||+++++.... .++... .. .. +.. ...-++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~-----~~-----~~-------------------~~~-~~~d~l 89 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI-----FF-----NE-------------------EIL-EKYNAF 89 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh-----hh-----ch-------------------hHH-hcCCEE
Confidence 56899999999999999998775432 222200 00 00 001 123478
Q ss_pred EecCCC----------------CCcEEEEEeCchh-------hhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCcc
Q 040255 255 VFDDVT----------------SGSRVIITTRDKQ-------VLKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDAS 311 (869)
Q Consensus 255 VLDDv~----------------~gsrIivTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~ 311 (869)
++||++ .|..||+|++... +...+...-++++++++.++-.+++.+.+-... -.-
T Consensus 90 liDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~--l~l 167 (214)
T PRK06620 90 IIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS--VTI 167 (214)
T ss_pred EEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC--CCC
Confidence 889997 6888999987532 223333445899999999998888877764221 112
Q ss_pred HHHHHHHHHHHcCCCchh
Q 040255 312 HIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 312 ~~~~~~~i~~~~~GlPLa 329 (869)
-+++.+.+++.+.|---.
T Consensus 168 ~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 168 SRQIIDFLLVNLPREYSK 185 (214)
T ss_pred CHHHHHHHHHHccCCHHH
Confidence 245666777776655443
No 108
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00046 Score=80.04 Aligned_cols=140 Identities=10% Similarity=0.111 Sum_probs=89.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccC--ceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCce
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFE--GSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKV 252 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~ 252 (869)
..+.|+|..|.|||.|++++++.+...+. .+.|+. ...+..++...+... ..+.++++++. -=
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~----~~~~f~~~y~~-~D 379 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG----KGDSFRRRYRE-MD 379 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc----cHHHHHHHhhc-CC
Confidence 45899999999999999999998765432 234443 123333333333211 12334444443 34
Q ss_pred EEEecCCC---------------------CCcEEEEEeCch---------hhhhhcCCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 253 RIVFDDVT---------------------SGSRVIITTRDK---------QVLKNCWANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 253 LlVLDDv~---------------------~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
+|||||++ .|..|||||+.. .+...+...-+++++..+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 78899997 577899988752 223334455689999999999999999887
Q ss_pred cCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 303 FGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 303 f~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
-.... .--+++.+.|++.+.+..-.|.
T Consensus 460 ~~r~l--~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 460 VQEQL--NAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HhcCC--CCCHHHHHHHHHhccCCHHHHH
Confidence 44322 1224667777777666544433
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.85 E-value=0.00023 Score=87.38 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=95.0
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc------CceEEEEeehhhh----cc
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF------EGSYFALNVREAE----ET 217 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s----~~ 217 (869)
...+.++||+.++.++...|.... ..-+.++|.+|+||||||+.+++++.... ...+|..+..... ..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 345679999999999999887543 23456999999999999999999875431 2334433332211 01
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-----------------------CC-cEEEEEeCchh
Q 040255 218 GGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-----------------------SG-SRVIITTRDKQ 273 (869)
Q Consensus 218 ~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-----------------------~g-srIivTTR~~~ 273 (869)
.....-.++++..+. + .+++++|++|++. .| -++|-||...+
T Consensus 262 ge~e~~lk~ii~e~~------------~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 262 GEFENRLKSVIDEVK------------A--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAE 327 (852)
T ss_pred hHHHHHHHHHHHHHH------------h--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHH
Confidence 111222222222211 0 2467899999987 12 34555555432
Q ss_pred hhhh-------cCCCeEEEeCCCCHHHHHHHHHHhhc--CCCCCCccHHHHHHHHHHHcCCC
Q 040255 274 VLKN-------CWANKKYRMKELVYADAHKLFCQWAF--GGDHLDASHIELTDKAIKYAQGV 326 (869)
Q Consensus 274 v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~af--~~~~~~~~~~~~~~~i~~~~~Gl 326 (869)
.... ......+.+++++.+++.+++....- ...+...-..+....+++.+.+.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 2111 11235899999999999999754431 11121122345556666666653
No 110
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00032 Score=78.36 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=97.4
Q ss_pred CcceeccccHHHHHHhhccCCC--------CeEEEEEEecCCchHHHHHHHHHHhhcCcc--------------------
Q 040255 151 KGLVGVECSIEEIESLLCIGSE--------GVCKLRIWGIGGISKITIAGAVFNKISRHF-------------------- 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-------------------- 202 (869)
++++|-+.-++.|...+..+.. -...+.++|+.|+||||+|+.+++.+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4588988888888888875431 246688999999999999999988653321
Q ss_pred CceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcE
Q 040255 203 EGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSR 264 (869)
Q Consensus 203 ~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsr 264 (869)
+...++.- ......+..+. ++...+... -..+++-++|+|+++ ++..
T Consensus 85 pD~~~i~~---~~~~i~i~~iR-~l~~~~~~~-----------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~ 149 (394)
T PRK07940 85 PDVRVVAP---EGLSIGVDEVR-ELVTIAARR-----------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTV 149 (394)
T ss_pred CCEEEecc---ccccCCHHHHH-HHHHHHHhC-----------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCe
Confidence 11112210 00111222221 222211100 012445578889998 4666
Q ss_pred EEEEeCch-hhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 265 VIITTRDK-QVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 265 IivTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
+|++|.+. .+... ......+.+++++.++..+.+.... + . ..+.+..++..++|.|.....+
T Consensus 150 fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 66666654 33322 2335789999999999998887432 1 1 1355778899999999755443
No 111
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=3e-06 Score=96.50 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=54.0
Q ss_pred CeeEEecCCCCCCcc-c--cccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccch
Q 040255 511 EVRHLEWPQCPLKTL-N--ICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEY 585 (869)
Q Consensus 511 ~L~~L~l~~~~l~~l-~--~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~ 585 (869)
+|..|++.+|.++.+ . .++.+|+.|++++|+|++++ .+..++.|+.|++++|. +..++.. +.+|+.
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--------~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--------GLSTLTLLKELNLSGNL-ISDISGLESLKSLKL 166 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheecccccccccc--------chhhccchhhheeccCc-chhccCCccchhhhc
Confidence 555555555555555 2 34556666666666665442 23344456666666665 5555554 566666
Q ss_pred hcccccccccCCCC-cCCccccceeccccc
Q 040255 586 LTVKGTTIRELPES-LGRLSWVKRLILSNN 614 (869)
Q Consensus 586 L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n 614 (869)
|++++|.+..++.. ...+.+|+.|.+.+|
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 66666666655442 355566666666666
No 112
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00053 Score=79.31 Aligned_cols=166 Identities=13% Similarity=0.077 Sum_probs=98.2
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc---------------------cCce
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH---------------------FEGS 205 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 205 (869)
|...+++||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3445679999999999999886432 23467899999999999999999865321 1111
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEE
Q 040255 206 YFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVII 267 (869)
Q Consensus 206 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIiv 267 (869)
..+. .+...++..+. +++..+... -..++.-++|+|+|+ +..++|+
T Consensus 91 ~eid----aas~~~v~~iR-~l~~~~~~~-----------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 91 FEVD----AASRTKVEDTR-ELLDNIPYA-----------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEEc----ccccCCHHHHH-HHHHHHhhc-----------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 1111 11122333322 222222110 012455688999998 4566666
Q ss_pred EeCch-hhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 268 TTRDK-QVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 268 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+|.+. .+... ......+++++++.++..+.+...+-..+.. -..+....|++.++|-+.-+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 55443 33221 1223578999999998877766555322221 123456778888988775443
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.82 E-value=0.00051 Score=76.68 Aligned_cols=168 Identities=14% Similarity=0.105 Sum_probs=100.7
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc----cC-----------------ceE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH----FE-----------------GSY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~~ 206 (869)
....+++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+...+... +. ...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344678999999999999886432 23567899999999999999999865321 11 011
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEE
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
++.. .....+.. .+++...+... -..+++-++|+|+++ +...+|++
T Consensus 90 ~~~~----~~~~~~~~-~~~l~~~~~~~-----------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 90 EIDA----ASNNGVDD-IREILDNVKYA-----------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred Eeec----cccCCHHH-HHHHHHHHhcC-----------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 1110 00111111 11222221110 012345588899986 34455666
Q ss_pred eCchh-hhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 269 TRDKQ-VLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 269 TR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
|.+.. +... ......+++++++.++..+.+...+-..... -..+.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHH
Confidence 65443 2221 1234678999999999988888766433221 124677888999999887665443
No 114
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00056 Score=75.36 Aligned_cols=177 Identities=16% Similarity=0.125 Sum_probs=103.9
Q ss_pred ccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc----cCceEEEEeehhhhccCCHH
Q 040255 146 FQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH----FEGSYFALNVREAEETGGIK 221 (869)
Q Consensus 146 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~s~~~~~~ 221 (869)
.|.....++|-+...+.+...+..+. -...+.|+|+.|+||||+|+.+.+.+-.+ +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 34556789999999999999887542 34468899999999999999999966432 1111000 000000
Q ss_pred HHHHHHHHH-------h----hcC----CCCCCHHHH---HHHH-----ccCceEEEecCCC------------------
Q 040255 222 DLQKKLLSE-------L----SKD----GNMRNIESQ---LNRL-----ARKKVRIVFDDVT------------------ 260 (869)
Q Consensus 222 ~l~~~il~~-------l----~~~----~~~~~~~~l---~~~L-----~~kr~LlVLDDv~------------------ 260 (869)
...+.+... + ... ...+.++.+ .+.+ .+++-++|+|+++
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 111111110 0 000 011122333 2332 3466789999998
Q ss_pred CCcEE-EEEeCchhhhhhc-CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 261 SGSRV-IITTRDKQVLKNC-WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 261 ~gsrI-ivTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
....+ ++|++-..+.... .....+++.+++.++..+++...+.... -..+....+++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23344 4454443333221 2346899999999999999987432211 123557789999999998665443
No 115
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00055 Score=78.10 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=99.6
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc---------------------cCce
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH---------------------FEGS 205 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 205 (869)
|...+++||-+..++.|...+..+. -...+.++|+.|+||||+|+.++..+... +...
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3445679999988888887776432 23478899999999999999998754211 1112
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEE
Q 040255 206 YFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVII 267 (869)
Q Consensus 206 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIiv 267 (869)
..+. .+...++..+. +++...... -..+++-++|+|+++ +..++|+
T Consensus 88 ~eid----aas~~~vddIR-~Iie~~~~~-----------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 88 IEID----AASNTSVDDIK-VILENSCYL-----------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEEe----cccCCCHHHHH-HHHHHHHhc-----------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 2222 11122333322 222221100 012456689999997 4455655
Q ss_pred Ee-Cchhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 040255 268 TT-RDKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 268 TT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
+| ..+.+... ......+++++++.++..+.+.+.+-..+.. -..+....|++.++|.+..
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 55 43444332 2344689999999999999888877443321 2245567888999887753
No 116
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00045 Score=80.41 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=98.2
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc---------------------CceE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF---------------------EGSY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~ 206 (869)
....++||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.+.... ....
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 345678999999999988886432 234568999999999999999998663211 1111
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEE
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
++. .+...++..+. +++...... -..+++-++|+|+++ ....+|++
T Consensus 92 ei~----~~~~~~vd~ir-~l~~~~~~~-----------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~ 155 (527)
T PRK14969 92 EVD----AASNTQVDAMR-ELLDNAQYA-----------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA 155 (527)
T ss_pred Eee----ccccCCHHHHH-HHHHHHhhC-----------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence 111 01111222221 222221100 013566789999998 34555555
Q ss_pred eCch-hhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHHH
Q 040255 269 TRDK-QVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL-ALKVL 333 (869)
Q Consensus 269 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 333 (869)
|.+. .+... ......++++.++.++..+.+.+.+-..+.. ...+....+++.++|.+- |+..+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5443 33211 1123578999999999988887655322211 223556788899999775 44433
No 117
>PF14516 AAA_35: AAA-like domain
Probab=97.76 E-value=0.0081 Score=66.03 Aligned_cols=183 Identities=9% Similarity=0.126 Sum_probs=111.4
Q ss_pred ccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-cCceEEEEeehhhhc--cCCHHH
Q 040255 146 FQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-FEGSYFALNVREAEE--TGGIKD 222 (869)
Q Consensus 146 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~--~~~~~~ 222 (869)
.+.+.+..|+|...-+++.+.+.. .-..+.|.|+-.+|||+|..++.++.... |. ++++. ...... ..+...
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id-~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYID-LQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEE-eecCCCcccCCHHH
Confidence 344566788998555666655543 12478899999999999999999877543 33 33443 333221 234554
Q ss_pred HHHHHHH----HhhcCC-C--------CC--C-HHHHHHHH---ccCceEEEecCCC-----------------------
Q 040255 223 LQKKLLS----ELSKDG-N--------MR--N-IESQLNRL---ARKKVRIVFDDVT----------------------- 260 (869)
Q Consensus 223 l~~~il~----~l~~~~-~--------~~--~-~~~l~~~L---~~kr~LlVLDDv~----------------------- 260 (869)
+.+.+.. ++.... . .. + ...+.+.+ ..++++|+||+|+
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 4444443 333111 0 00 1 23333332 2589999999998
Q ss_pred -----CCcEEEEEeCchh--hh-h----hcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 040255 261 -----SGSRVIITTRDKQ--VL-K----NCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL 328 (869)
Q Consensus 261 -----~gsrIivTTR~~~--v~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 328 (869)
-.+-.+|...... .. . -.++...+++++++.+|...|..++-.. . -....+++...+||+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~----~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F----SQEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C----CHHHHHHHHHHHCCCHH
Confidence 0111122222111 11 1 1134457899999999999999876422 1 12238899999999999
Q ss_pred hHHHHHhhhcC
Q 040255 329 ALKVLGCYLCG 339 (869)
Q Consensus 329 al~~~g~~L~~ 339 (869)
-+..++..+..
T Consensus 235 Lv~~~~~~l~~ 245 (331)
T PF14516_consen 235 LVQKACYLLVE 245 (331)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 118
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00032 Score=81.21 Aligned_cols=169 Identities=17% Similarity=0.140 Sum_probs=97.2
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc--cC-------------------ce
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH--FE-------------------GS 205 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~-------------------~~ 205 (869)
|....+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+... .. ..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 344567999999999999888643 223678899999999999999999876321 00 00
Q ss_pred EEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-----------------C-CcEEEE
Q 040255 206 YFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-----------------S-GSRVII 267 (869)
Q Consensus 206 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-----------------~-gsrIiv 267 (869)
.++. .+...++..+ +.+...+... -..+++-++|+|+++ + ...+|+
T Consensus 91 ieId----aas~igVd~I-ReIi~~~~~~-----------P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL 154 (605)
T PRK05896 91 VELD----AASNNGVDEI-RNIIDNINYL-----------PTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIF 154 (605)
T ss_pred EEec----cccccCHHHH-HHHHHHHHhc-----------hhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 1110 0001112211 1111111100 012234469999997 2 344444
Q ss_pred -EeCchhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHHHH
Q 040255 268 -TTRDKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL-ALKVLG 334 (869)
Q Consensus 268 -TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g 334 (869)
|+....+... ......+++.+++.++....+...+-..+.. -..+.+..+++.++|-+. |+..+-
T Consensus 155 ~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 155 ATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred ECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4443334322 2234688999999999988887765332211 123557788899998654 444433
No 119
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.75 E-value=0.00032 Score=78.55 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=89.6
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC-
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG- 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~- 218 (869)
.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- .+. ..+....+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s~l~~k~~ 220 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GSEFVQKYL 220 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hHHHHHHhc
Confidence 5688999999888876531 1134567889999999999999999997655431 111 00000000
Q ss_pred -CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCc
Q 040255 219 -GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGS 263 (869)
Q Consensus 219 -~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gs 263 (869)
......+++ +.......+.+|++|+++ .+.
T Consensus 221 ge~~~~lr~l---------------f~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 221 GEGPRMVRDV---------------FRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred chhHHHHHHH---------------HHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 001111111 112223456777788765 234
Q ss_pred EEEEEeCchhhhhh-----cCCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 040255 264 RVIITTRDKQVLKN-----CWANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 264 rIivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 327 (869)
.||+||...+.+.. ...+..++++..+.++..++|..+.-+... +..++ .++++.+.|.-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 57778875543321 124567899999999998888876533221 22233 35556666654
No 120
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00046 Score=80.91 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=97.0
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc----cCceEEEEeehhhhccCCHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH----FEGSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~s~~~~~~~l 223 (869)
...+++||-+.-++.|..++..+ .-...+.++|..|+||||+|+.+.+.+... ..+... ...+.-.-
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccHH
Confidence 34567999888888888888743 234567899999999999999998865321 000000 00000000
Q ss_pred HHHHHH-------HhhcCCCCCCHHHHHHHH--------ccCceEEEecCCC------------------CCcEEEEEeC
Q 040255 224 QKKLLS-------ELSKDGNMRNIESQLNRL--------ARKKVRIVFDDVT------------------SGSRVIITTR 270 (869)
Q Consensus 224 ~~~il~-------~l~~~~~~~~~~~l~~~L--------~~kr~LlVLDDv~------------------~gsrIivTTR 270 (869)
...+.. .+.. ......+.+++.+ .++.-++|||+|+ ...++|++|.
T Consensus 84 C~~i~~g~h~D~~elda-as~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 84 CRDIDSGRFVDYTELDA-ASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHcCCCCceeecCc-ccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 000000 0000 0001122222221 2345588999998 3345665554
Q ss_pred c-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 271 D-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 271 ~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+ ..+... ......++++.++.++..+.+.+.+-..+.. -..+....|++.++|-+.-+.
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 4 333321 2334789999999999998888766432221 123567788889998775443
No 121
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.74 E-value=0.00027 Score=80.82 Aligned_cols=140 Identities=17% Similarity=0.264 Sum_probs=82.4
Q ss_pred CCcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-----CceEEEEeehh
Q 040255 150 NKGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF-----EGSYFALNVRE 213 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~~~ 213 (869)
-.++.|.+..++++...+.. +-...+-|.++|++|.|||++|+++++.+...+ ....|+. +..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc
Confidence 35678899999888876532 112345688999999999999999999876542 2344443 111
Q ss_pred --hhccC--CHHHHHHHHHHHhhcCCCCCCHHHHHHH-HccCceEEEecCCC----------------------------
Q 040255 214 --AEETG--GIKDLQKKLLSELSKDGNMRNIESQLNR-LARKKVRIVFDDVT---------------------------- 260 (869)
Q Consensus 214 --~s~~~--~~~~l~~~il~~l~~~~~~~~~~~l~~~-L~~kr~LlVLDDv~---------------------------- 260 (869)
....+ ......+.++.. .++. ..+++++|+||+++
T Consensus 260 ~eLl~kyvGete~~ir~iF~~------------Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 260 PELLNKYVGETERQIRLIFQR------------AREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred hhhcccccchHHHHHHHHHHH------------HHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 00000 011111222111 1111 12467788888876
Q ss_pred ----CCcEEEEEeCchhhhhh-----cCCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 261 ----SGSRVIITTRDKQVLKN-----CWANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 261 ----~gsrIivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
.+..||.||-....+.. ...+..++++..+.++..++|..+.
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 12234555554433221 1235678999999999999998876
No 122
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.001 Score=78.16 Aligned_cols=170 Identities=12% Similarity=0.125 Sum_probs=100.3
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccC---------ceEEEEeehhh----
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFE---------GSYFALNVREA---- 214 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------~~~~~~~~~~~---- 214 (869)
....+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..... .+.+-...+.+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGR 99 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCC
Confidence 445679999999999999887442 2446889999999999999999996643221 11110000000
Q ss_pred ---------hccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEE
Q 040255 215 ---------EETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVII 267 (869)
Q Consensus 215 ---------s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIiv 267 (869)
....++..+. +++..+.. .-..+++-++|+|+++ +++.+|+
T Consensus 100 h~Dv~e~~a~s~~gvd~IR-eIie~~~~-----------~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl 167 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIR-EIIESVRY-----------RPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIF 167 (598)
T ss_pred CCceEEecccccCCHHHHH-HHHHHHHh-----------chhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 0011111111 11111100 0012345578999997 4455554
Q ss_pred -EeCchhhhhhc-CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 268 -TTRDKQVLKNC-WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 268 -TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
||....+.... .....++++.++.++..+.+.+.+-..... -..+....|++.++|-+.-+..
T Consensus 168 ~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 168 ATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred EeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 44444443222 234689999999999999888776432211 2236678889999998865543
No 123
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.73 E-value=7.7e-05 Score=81.70 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=59.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc-cCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCC-----------HHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRN-----------IES 242 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~-----------~~~ 242 (869)
..++|+|++|.|||||++.+++.+... |+..+|+..+++- ...+.++++.++..+-....... .+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 568999999999999999999977654 9999999865432 25788888888655442221111 111
Q ss_pred HHH-HHccCceEEEecCCC
Q 040255 243 QLN-RLARKKVRIVFDDVT 260 (869)
Q Consensus 243 l~~-~L~~kr~LlVLDDv~ 260 (869)
.+. +-.+++++|++|++.
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 111 235899999999995
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.72 E-value=0.00032 Score=85.46 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=81.9
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-----c-CceEEEEeehhhhc----cC
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-----F-EGSYFALNVREAEE----TG 218 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~~~~~~~~~~~~s~----~~ 218 (869)
..+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++++... + ...+|..+...... ..
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g 257 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRG 257 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccc
Confidence 44579999999999999886542 3345799999999999999999976432 1 33444433221110 00
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHH-ccCceEEEecCCC------------------------CC-cEEEEEeCch
Q 040255 219 GIKDLQKKLLSELSKDGNMRNIESQLNRL-ARKKVRIVFDDVT------------------------SG-SRVIITTRDK 272 (869)
Q Consensus 219 ~~~~l~~~il~~l~~~~~~~~~~~l~~~L-~~kr~LlVLDDv~------------------------~g-srIivTTR~~ 272 (869)
..+.-.++++ +.+ ..++.+|++|+++ .| -++|-+|..+
T Consensus 258 ~~e~~l~~i~----------------~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 258 DFEERLKAVV----------------SEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYE 321 (731)
T ss_pred hHHHHHHHHH----------------HHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHH
Confidence 1111122221 222 2457899999997 11 1344444432
Q ss_pred hhhh-------hcCCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 273 QVLK-------NCWANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 273 ~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
+... .......++++.++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 2111 01123578999999999999998654
No 125
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.00055 Score=74.95 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=115.4
Q ss_pred cCCcceeccccHHHHHHhhcc--CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCc--eEEEEeehhhhccCCHHHHH
Q 040255 149 KNKGLVGVECSIEEIESLLCI--GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEG--SYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~ 224 (869)
.+..++||+.++..+.+++.. +.+..+.+=|.|-+|.|||.+-..++.+....... ++++.+.. -.....+.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHHH
Confidence 346799999999999998864 34566778899999999999999999976554433 35555331 12345566
Q ss_pred HHHHHHhhc----CCCCCC-HHHHHHHHccC--ceEEEecCCC-------------------CCcEEEEEeCchhh----
Q 040255 225 KKLLSELSK----DGNMRN-IESQLNRLARK--KVRIVFDDVT-------------------SGSRVIITTRDKQV---- 274 (869)
Q Consensus 225 ~~il~~l~~----~~~~~~-~~~l~~~L~~k--r~LlVLDDv~-------------------~gsrIivTTR~~~v---- 274 (869)
..|.+.+.. .....+ .+.+.+...+. .+|+|||.++ +++|+|+----..+
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 667666632 221111 44555555443 5899999998 77877654322211
Q ss_pred --hhhc-----CCCeEEEeCCCCHHHHHHHHHHhhcCCCC---CCccHHHHHHHHHHHcCCCchhHHHHHhhh
Q 040255 275 --LKNC-----WANKKYRMKELVYADAHKLFCQWAFGGDH---LDASHIELTDKAIKYAQGVPLALKVLGCYL 337 (869)
Q Consensus 275 --~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~---~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 337 (869)
+... -....+..++.+.++-.+++..+.-.... .+...+-.+++++...|.+--|+.+.-+.+
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111 12356788999999999999888633221 122334445555555555666665554433
No 126
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=1.1e-05 Score=59.73 Aligned_cols=39 Identities=38% Similarity=0.538 Sum_probs=20.0
Q ss_pred ccchhcccccccccCCCCcCCccccceecccccccccccC
Q 040255 582 NLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIP 621 (869)
Q Consensus 582 ~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP 621 (869)
+|++|++++|+|+.+|+.+++|++|++|++++| .+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 455555555555555555555555555555555 444443
No 127
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.72 E-value=0.00041 Score=82.31 Aligned_cols=185 Identities=17% Similarity=0.106 Sum_probs=102.5
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc--Ccc---CceEEEEeehhhhccCCHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS--RHF---EGSYFALNVREAEETGGIK 221 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F---~~~~~~~~~~~~s~~~~~~ 221 (869)
|...+.++|.+..+..+.+.+.. .....+.|+|++|+||||||+.+++... ..+ ....|+..-.. ....+..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~-~l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT-TLRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech-hccCCHH
Confidence 34456799999999988877743 3345799999999999999999988542 122 12334431110 0011111
Q ss_pred HHHHH---------------HHHHhhc------------------CCCC-CC---HHHHHHHHccCceEEEecCCC----
Q 040255 222 DLQKK---------------LLSELSK------------------DGNM-RN---IESQLNRLARKKVRIVFDDVT---- 260 (869)
Q Consensus 222 ~l~~~---------------il~~l~~------------------~~~~-~~---~~~l~~~L~~kr~LlVLDDv~---- 260 (869)
.+... .+...+. ++.. .+ +..+.+.+..+++.++-|+.|
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 11111 1111010 0010 11 677788888899888877554
Q ss_pred --------------CCcEEEE--EeCchhhhhh--cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHH
Q 040255 261 --------------SGSRVII--TTRDKQVLKN--CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKY 322 (869)
Q Consensus 261 --------------~gsrIiv--TTR~~~v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~ 322 (869)
+...|+| ||++...... ......+.+.+++.+|.++++.+.+-..... -..+..+.|.++
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~~y 384 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIARY 384 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHC
Confidence 1223444 6665432111 1123467899999999999998876322111 113445555555
Q ss_pred cCCCchhHHHHHhh
Q 040255 323 AQGVPLALKVLGCY 336 (869)
Q Consensus 323 ~~GlPLal~~~g~~ 336 (869)
+..-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 55445555555433
No 128
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.71 E-value=0.00025 Score=87.48 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=82.4
Q ss_pred CCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-----c-CceEEEEeehhhhc----cCC
Q 040255 150 NKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-----F-EGSYFALNVREAEE----TGG 219 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F-~~~~~~~~~~~~s~----~~~ 219 (869)
.+.++||+++++++.+.|.... ..-+.++|++|+|||++|+.++.++... . ...+|.-+...... ...
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 3568999999999999997543 2345699999999999999999976432 1 23455443322110 011
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-----------------------CC-cEEEEEeCchhhh
Q 040255 220 IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-----------------------SG-SRVIITTRDKQVL 275 (869)
Q Consensus 220 ~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-----------------------~g-srIivTTR~~~v~ 275 (869)
.+.-.+.++.. .-..++++|++|+++ .| -++|.+|......
T Consensus 256 ~e~rl~~i~~~---------------~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~ 320 (821)
T CHL00095 256 FEERLKRIFDE---------------IQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR 320 (821)
T ss_pred HHHHHHHHHHH---------------HHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHH
Confidence 11112222211 123467899999996 11 3556555554432
Q ss_pred hh-------cCCCeEEEeCCCCHHHHHHHHHHh
Q 040255 276 KN-------CWANKKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 276 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 301 (869)
.. ......++++..+.++..+++...
T Consensus 321 ~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 321 KHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 11 112356789999999988887643
No 129
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0016 Score=76.21 Aligned_cols=169 Identities=18% Similarity=0.136 Sum_probs=99.3
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc--C---c------------------
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF--E---G------------------ 204 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~---~------------------ 204 (869)
...+++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.... . +
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 34567999999899999988743 2234578999999999999999998654211 0 0
Q ss_pred eEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEE
Q 040255 205 SYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVI 266 (869)
Q Consensus 205 ~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIi 266 (869)
++.+. .+...++..+. ++...+. ..-..+++-++|+|+++ ....+|
T Consensus 89 vieid----aas~~gvd~iR-el~~~~~-----------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 89 VVELD----AASHGGVDDTR-ELRDRAF-----------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred EEEec----cccccCHHHHH-HHHHHHH-----------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 00010 00111222221 1111110 00012456688999997 344445
Q ss_pred E-EeCchhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHHHHh
Q 040255 267 I-TTRDKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL-ALKVLGC 335 (869)
Q Consensus 267 v-TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g~ 335 (869)
+ ||....+... ......|++..++.++..+.+.+.+-..... -..+....|++.++|-+- |+..+-.
T Consensus 153 L~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 153 FATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred EEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4 5444444432 2335789999999999988887765432221 123456778889999774 4444443
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.69 E-value=0.00039 Score=76.19 Aligned_cols=134 Identities=17% Similarity=0.102 Sum_probs=80.7
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
|....+++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....| ..+. . +. .....+...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~~-~~~~~i~~~ 87 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---SD-CRIDFVRNR 87 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---Cc-ccHHHHHHH
Confidence 445578999999999999988743 2346777799999999999999999764322 2222 1 11 112222221
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-------------------CCcEEEEEeCchhhhh--hcCCCeEEE
Q 040255 227 LLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-------------------SGSRVIITTRDKQVLK--NCWANKKYR 285 (869)
Q Consensus 227 il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-------------------~gsrIivTTR~~~v~~--~~~~~~~~~ 285 (869)
+...... ..+.+.+-++|+||++ .+.++|+||.....+. .......+.
T Consensus 88 l~~~~~~-----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 88 LTRFAST-----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred HHHHHHh-----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEE
Confidence 2111000 0012345578889987 5678888886543211 112234677
Q ss_pred eCCCCHHHHHHHHHH
Q 040255 286 MKELVYADAHKLFCQ 300 (869)
Q Consensus 286 l~~L~~~ea~~Lf~~ 300 (869)
++..+.++..+++..
T Consensus 157 ~~~p~~~~~~~il~~ 171 (316)
T PHA02544 157 FGVPTKEEQIEMMKQ 171 (316)
T ss_pred eCCCCHHHHHHHHHH
Confidence 888888888766544
No 131
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.68 E-value=0.0011 Score=66.62 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=79.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc---------------------cCceEEEEeehhhhccCCHHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH---------------------FEGSYFALNVREAEETGGIKDLQKKLLSELSK 233 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~ 233 (869)
..+.++|+.|+||||+|+.+.+.+... +....++.. .....++..+. ++...+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~~~~~~~~i~-~i~~~~~~ 90 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EGQSIKVDQVR-ELVEFLSR 90 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---ccCcCCHHHHH-HHHHHHcc
Confidence 678899999999999999999876431 111122211 01112222221 12222111
Q ss_pred CCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCch-hhhhhc-CCCeEEEeCCCCHHH
Q 040255 234 DGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDK-QVLKNC-WANKKYRMKELVYAD 293 (869)
Q Consensus 234 ~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~e 293 (869)
.. ..+.+-++|+||++ +...+|++|++. .+.... .....+++.+++.++
T Consensus 91 ~~-----------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~ 159 (188)
T TIGR00678 91 TP-----------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEA 159 (188)
T ss_pred Cc-----------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHH
Confidence 00 12456688899987 446666666653 222211 234689999999999
Q ss_pred HHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 040255 294 AHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 294 a~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
..+.+... + . ..+.+..+++.++|.|..
T Consensus 160 ~~~~l~~~--g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 160 LLQWLIRQ--G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHHHHc--C--C----CHHHHHHHHHHcCCCccc
Confidence 98888776 1 1 146688999999998863
No 132
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00087 Score=78.14 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=101.9
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc--C-------------------ceE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF--E-------------------GSY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-------------------~~~ 206 (869)
...++++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+.... + ...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34467899888888888877643 2246788899999999999999998664211 0 011
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEE
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
++. .....++..+. .+...+.. .-..+++-++|+|+++ ....+|++
T Consensus 92 eId----~a~~~~Id~iR-~L~~~~~~-----------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILa 155 (624)
T PRK14959 92 EID----GASNRGIDDAK-RLKEAIGY-----------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLA 155 (624)
T ss_pred EEe----cccccCHHHHH-HHHHHHHh-----------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEe
Confidence 111 00111222221 11111110 0123566789999998 33455555
Q ss_pred eCc-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHHHHhhh
Q 040255 269 TRD-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVP-LALKVLGCYL 337 (869)
Q Consensus 269 TR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~~L 337 (869)
|.+ ..+... ......++++.++.++..+.+...+..... .-..+.++.|++.++|.+ .|+..+...+
T Consensus 156 Tt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 156 TTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred cCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 544 333322 123457899999999999888876643322 122456778889999854 6777766544
No 133
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0015 Score=79.54 Aligned_cols=163 Identities=13% Similarity=0.071 Sum_probs=96.5
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc--c--C-c------------------
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH--F--E-G------------------ 204 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F--~-~------------------ 204 (869)
....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.+... . . |
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 344679999988999998887432 23467899999999999999999876421 0 0 0
Q ss_pred eEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEE
Q 040255 205 SYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVI 266 (869)
Q Consensus 205 ~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIi 266 (869)
..++. .....++..+.. +...+. ..-..+++-++|||+++ ....+|
T Consensus 91 v~eid----aas~~~Vd~iR~-l~~~~~-----------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fI 154 (824)
T PRK07764 91 VTEID----AASHGGVDDARE-LRERAF-----------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFI 154 (824)
T ss_pred EEEec----ccccCCHHHHHH-HHHHHH-----------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 01111 001112222211 111110 01123455678899998 444555
Q ss_pred EEe-Cchhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 040255 267 ITT-RDKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 267 vTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
++| ....+... -.....|++..++.++..+.+.+.+-..... ...+....|++.++|.+..
T Consensus 155 l~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 155 FATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred EEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 444 44444432 2345789999999999988887654222211 1234567888999997743
No 134
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0012 Score=74.58 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=95.6
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc--cCceEEEEeehh------------
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH--FEGSYFALNVRE------------ 213 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~------------ 213 (869)
....+++|-+.-++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+... +....|.....+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 345679999888888888886432 23457899999999999999999976431 100000000000
Q ss_pred -----------hhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcE
Q 040255 214 -----------AEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSR 264 (869)
Q Consensus 214 -----------~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsr 264 (869)
.....++..+. ++...+.. .-..+++-++|+|+++ +.+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~-----------~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~ 159 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIR-LLRENVRY-----------GPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAI 159 (397)
T ss_pred cCCCCCeEeecccccCCHHHHH-HHHHHHhh-----------chhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeE
Confidence 00001111111 11111100 0012455688999997 3455
Q ss_pred EEEEe-Cchhhhhhc-CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 040255 265 VIITT-RDKQVLKNC-WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 265 IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 330 (869)
+|++| +...+.... .....+++++++.++..+.+...+-... ..-..+.+..+++.++|.+--+
T Consensus 160 ~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 160 FIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred EEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 55554 444443221 1235789999999998888776653221 1123467788999999977533
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.63 E-value=0.00065 Score=83.76 Aligned_cols=138 Identities=16% Similarity=0.150 Sum_probs=82.2
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc------CceEEEEeehhhhc----cC
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF------EGSYFALNVREAEE----TG 218 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~----~~ 218 (869)
..+.++||+.++.++...|+... ..-+.++|.+|+||||||+.++.++.... ...+|..+...... ..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g 253 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 253 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhh
Confidence 34569999999999999887543 33456899999999999999999875421 23444333222110 01
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----CC--------------------cEEEEEeCchhh
Q 040255 219 GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----SG--------------------SRVIITTRDKQV 274 (869)
Q Consensus 219 ~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----~g--------------------srIivTTR~~~v 274 (869)
....-.+.++..+ . -.+.+++|++|+++ .| -++|-||.....
T Consensus 254 ~~e~~lk~~~~~~------------~--~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 254 EFEERLKGVLNDL------------A--KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred hhHHHHHHHHHHH------------H--HcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 1122222222211 0 12468999999998 11 245555444432
Q ss_pred hhh-------cCCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 275 LKN-------CWANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 275 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
... ......+.+...+.++..+++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 111 1122356788889999999886544
No 136
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.63 E-value=4.9e-06 Score=75.79 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=66.7
Q ss_pred cCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCC
Q 040255 556 LCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLT 631 (869)
Q Consensus 556 ~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~ 631 (869)
+.....|+..+|++|. ++++|+. ++.++.|+|++|.|+.+|..+..++.|+.|+++.| .+...|.-|..|.+|-
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence 3345567777888887 7778876 55778888888888888888888888888888888 7888888777788888
Q ss_pred EEecCCCCCCcccC
Q 040255 632 FLFISHCERLQTLP 645 (869)
Q Consensus 632 ~L~L~~c~~l~~lp 645 (869)
.|+..+| ....||
T Consensus 127 ~Lds~~n-a~~eid 139 (177)
T KOG4579|consen 127 MLDSPEN-ARAEID 139 (177)
T ss_pred HhcCCCC-ccccCc
Confidence 8887763 334444
No 137
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.63 E-value=2.8e-05 Score=88.60 Aligned_cols=105 Identities=20% Similarity=0.292 Sum_probs=66.0
Q ss_pred cccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 481 FSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
+..+.+|..|++++|....+...+..++ +|++|++++|.+..+ ...+..|..|++.+|.|+.+. .+..
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~--~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~--------~~~~ 160 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLV--NLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS--------GLES 160 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhh--cchheeccccccccccchhhccchhhheeccCcchhcc--------CCcc
Confidence 4566777777777665555444355554 777777777777776 445566777777777776431 2334
Q ss_pred CCCccEEEecCCCCCcccCc---c-ccccchhcccccccccC
Q 040255 559 FKTPITFEIIDCKMLERLPD---E-LENLEYLTVKGTTIREL 596 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~---~-l~~L~~L~L~~n~i~~l 596 (869)
+++|+.+++++|. +..++. . +.+|+.|.+.+|.+..+
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred chhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 6677777777776 444444 3 66677777777666543
No 138
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00088 Score=75.04 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=97.6
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC--------ccCceEEEEeehhhhccC
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR--------HFEGSYFALNVREAEETG 218 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~F~~~~~~~~~~~~s~~~ 218 (869)
|...++++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+++.+.+.. .|....+- .. .....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~-~~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LD-AASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ec-cccCC
Confidence 334567899999999999988643 23457889999999999999999887643 12222211 10 01111
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEe-Cchhhhhh-c
Q 040255 219 GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITT-RDKQVLKN-C 278 (869)
Q Consensus 219 ~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTT-R~~~v~~~-~ 278 (869)
++..+. +++.++... -..+++-++++|+++ ....+|++| ....+... .
T Consensus 89 ~~~~i~-~l~~~~~~~-----------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 89 SVDDIR-NLIDQVRIP-----------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred CHHHHH-HHHHHHhhc-----------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 222222 222221100 012345579999886 234455554 33333221 1
Q ss_pred CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 040255 279 WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 279 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
.....+++++++.++....+...+...+.. -..+....+++.++|.+-.
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRD 205 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHH
Confidence 234578999999999988888776443321 1246777888889886553
No 139
>PRK08116 hypothetical protein; Validated
Probab=97.58 E-value=0.00036 Score=74.05 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=45.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRI 254 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~Ll 254 (869)
..+.++|.+|+|||.||.++++.+..+-..++|+. ...+...+........ ......+.+.+.+-. ||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~-~~~~~~~~~~l~~~d-lL 182 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG-KEDENEIIRSLVNAD-LL 182 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc-cccHHHHHHHhcCCC-EE
Confidence 35789999999999999999998765533445554 1233444433332211 112334455555444 89
Q ss_pred EecCCC
Q 040255 255 VFDDVT 260 (869)
Q Consensus 255 VLDDv~ 260 (869)
||||+.
T Consensus 183 viDDlg 188 (268)
T PRK08116 183 ILDDLG 188 (268)
T ss_pred EEeccc
Confidence 999994
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0025 Score=75.04 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=94.6
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc--cCceEEEEeehhhhccCCHHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH--FEGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
...+++||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... .+.-.|...+.+ ..+.-.-.+
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC~ 88 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESCR 88 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHHH
Confidence 34567999998888888888643 223458899999999999999999866331 110011110000 000000000
Q ss_pred HHHHH-------hhcCCCCCC---HHHHHHHH-----ccCceEEEecCCC-----------------C-CcEEEE-EeCc
Q 040255 226 KLLSE-------LSKDGNMRN---IESQLNRL-----ARKKVRIVFDDVT-----------------S-GSRVII-TTRD 271 (869)
Q Consensus 226 ~il~~-------l~~~~~~~~---~~~l~~~L-----~~kr~LlVLDDv~-----------------~-gsrIiv-TTR~ 271 (869)
.+... +.+. .... +..+.+.+ .+++-++|+|+++ + ...+|+ |++.
T Consensus 89 ~~~~g~~~n~~~~d~~-s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 89 DFDAGTSLNISEFDAA-SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHhccCCCCeEEeccc-ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 00000 0000 0000 11111112 2445578999998 2 344444 4444
Q ss_pred hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch
Q 040255 272 KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL 328 (869)
Q Consensus 272 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 328 (869)
..+... ......+++.+++.++....+...+-.... .-..+.++.+++.++|..-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 444332 234578999999999988877765532221 1124567888999999554
No 141
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.54 E-value=0.0012 Score=81.88 Aligned_cols=136 Identities=16% Similarity=0.166 Sum_probs=81.7
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc------CceEEEEeehhhh-c---cC
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF------EGSYFALNVREAE-E---TG 218 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s-~---~~ 218 (869)
..+.++||+.++.++...|.... ..-+.++|.+|+|||+||+.++.++...+ ...+|..++...- . ..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g 248 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRG 248 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhh
Confidence 34569999999999999987543 23445899999999999999999875432 2344433222110 0 00
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHH--ccCceEEEecCCC----CC--------------------cEEEEEeCch
Q 040255 219 GIKDLQKKLLSELSKDGNMRNIESQLNRL--ARKKVRIVFDDVT----SG--------------------SRVIITTRDK 272 (869)
Q Consensus 219 ~~~~l~~~il~~l~~~~~~~~~~~l~~~L--~~kr~LlVLDDv~----~g--------------------srIivTTR~~ 272 (869)
....-.+. +.+.+ .+++.+|++|+++ .| -++|-+|..+
T Consensus 249 ~~e~~l~~----------------~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 249 EFEERLKA----------------VLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLD 312 (852)
T ss_pred hHHHHHHH----------------HHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHH
Confidence 11111111 11222 1468999999998 11 1344444433
Q ss_pred hhhhh-------cCCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 273 QVLKN-------CWANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 273 ~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
..-.. ......+.++.++.++..+++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 32110 1123467899999999999887653
No 142
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00073 Score=69.49 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=101.4
Q ss_pred cCcCCcceeccccHHHHHHhhcc---CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCI---GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 223 (869)
|....+|||-++-.++|.-.+.. ....+--|.++|++|.||||||.-+++++...+... .+.+-++ ..=
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK---~gD 93 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEK---PGD 93 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccC---hhh
Confidence 44557899998888888766643 234466789999999999999999999876554311 0001001 111
Q ss_pred HHHHHHHhhcCCCCC-C---------HHHHHHHHccCceEEEecCCCCCcE-----------EEEEeCchhhhhhc--CC
Q 040255 224 QKKLLSELSKDGNMR-N---------IESQLNRLARKKVRIVFDDVTSGSR-----------VIITTRDKQVLKNC--WA 280 (869)
Q Consensus 224 ~~~il~~l~~~~~~~-~---------~~~l~~~L~~kr~LlVLDDv~~gsr-----------IivTTR~~~v~~~~--~~ 280 (869)
+..++..+...+.-. + .+.+--.+.+-++=|++.-= +++| |=.|||.-.+..-. ..
T Consensus 94 laaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~g-p~Arsv~ldLppFTLIGATTr~G~lt~PLrdRF 172 (332)
T COG2255 94 LAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKG-PAARSIRLDLPPFTLIGATTRAGMLTNPLRDRF 172 (332)
T ss_pred HHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccC-CccceEeccCCCeeEeeeccccccccchhHHhc
Confidence 122333333222110 1 11111222222222222211 3333 33588865443222 12
Q ss_pred CeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhh
Q 040255 281 NKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYL 337 (869)
Q Consensus 281 ~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 337 (869)
.-+.+++-.+.+|-.+...+.|-.-+ .+-.++-+.+|+++..|-|--..-+-+..
T Consensus 173 Gi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 173 GIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred CCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 34778999999999999988873211 22234678899999999996544444333
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.002 Score=74.14 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=97.0
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-----cCc----------------eE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-----FEG----------------SY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~----------------~~ 206 (869)
....+++|-+.-++.|...+..+. -...+.++|+.|+||||+|+.++..+... .++ ..
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 344678999999999999886532 34566789999999999999999865421 011 11
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEE
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
.+. .+...++..+. .+...+.. .-..+++-++|+|+++ +...+|++
T Consensus 92 eid----aas~~gvd~ir-~I~~~~~~-----------~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~ 155 (486)
T PRK14953 92 EID----AASNRGIDDIR-ALRDAVSY-----------TPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILC 155 (486)
T ss_pred EEe----CccCCCHHHHH-HHHHHHHh-----------CcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 110 00111121111 11111100 0013456699999997 24444444
Q ss_pred e-Cchhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 269 T-RDKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 269 T-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
| +...+... ......+++.+++.++....+...+-..... -..+.+..+++.++|.+..+..+
T Consensus 156 tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 156 TTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred ECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4 43333321 1234578999999999988887765332211 22355677888899977654433
No 144
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0011 Score=78.47 Aligned_cols=170 Identities=12% Similarity=0.119 Sum_probs=97.7
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-cCc---eE------------EEEe
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-FEG---SY------------FALN 210 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~---~~------------~~~~ 210 (869)
|....+++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+-.. ... .| ++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie- 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE- 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence 334567899999899999888643 234567889999999999999999865321 100 00 000
Q ss_pred ehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEE-EEeCc
Q 040255 211 VREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVI-ITTRD 271 (869)
Q Consensus 211 ~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIi-vTTR~ 271 (869)
+. .....++..+ +++...+.. .-..+++-++|+|+++ ....+| +||+.
T Consensus 92 id-aasn~~vd~I-ReLie~~~~-----------~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 92 MD-AASNNGVDEI-RELIENVKN-----------LPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred Ee-ccccCCHHHH-HHHHHHHHh-----------chhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 00 0000111111 111111110 0013566688999997 233434 55554
Q ss_pred hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHHH
Q 040255 272 KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL-ALKVL 333 (869)
Q Consensus 272 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 333 (869)
..+... ......+++.+++.++..+.+...+-..+.. ...+.+..+++.++|-+. |+..+
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444432 2334689999999999988887755322211 123457788999988664 44433
No 145
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0035 Score=71.68 Aligned_cols=169 Identities=13% Similarity=0.109 Sum_probs=97.7
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc---cC---c-e-------------EE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH---FE---G-S-------------YF 207 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---F~---~-~-------------~~ 207 (869)
...++++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+... -+ + . -|
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 345679999999999998886432 23567889999999999999999865321 00 0 0 01
Q ss_pred EEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEe
Q 040255 208 ALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITT 269 (869)
Q Consensus 208 ~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTT 269 (869)
+.. . .....++..+. ++...+. ..-..+++-++|+|+++ ....+|++|
T Consensus 93 ~~i-~-g~~~~gid~ir-~i~~~l~-----------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 93 LEI-D-GASHRGIEDIR-QINETVL-----------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred EEe-e-ccccCCHHHHH-HHHHHHH-----------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEe
Confidence 110 0 00111222221 1111110 00112556688999987 344555555
Q ss_pred C-chhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHHH
Q 040255 270 R-DKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL-ALKVL 333 (869)
Q Consensus 270 R-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 333 (869)
. ...+... ......+++++++.++..+.+...+-..+. .-..+.+..++++++|.+. |+..+
T Consensus 159 ~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 159 TEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 3333322 123468899999999998888776532221 1224567888999998664 44443
No 146
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00081 Score=74.26 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=79.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCce
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKV 252 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~ 252 (869)
....+.|||..|.|||.|++++.+......+....+.. +. ......+...+... ..+..++.. .-=
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~----~s----e~f~~~~v~a~~~~----~~~~Fk~~y--~~d 177 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL----TS----EDFTNDFVKALRDN----EMEKFKEKY--SLD 177 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec----cH----HHHHHHHHHHHHhh----hHHHHHHhh--ccC
Confidence 46789999999999999999999988777664433331 11 22222232222211 134555555 334
Q ss_pred EEEecCCC---------------------CCcEEEEEeCch---------hhhhhcCCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 253 RIVFDDVT---------------------SGSRVIITTRDK---------QVLKNCWANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 253 LlVLDDv~---------------------~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
++++||++ .|..||+|++.. .+.......-++++.+++.+.....+.+++
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 88999997 566899998643 333344455789999999999999998876
Q ss_pred cC
Q 040255 303 FG 304 (869)
Q Consensus 303 f~ 304 (869)
-.
T Consensus 258 ~~ 259 (408)
T COG0593 258 ED 259 (408)
T ss_pred Hh
Confidence 43
No 147
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0042 Score=71.63 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=99.8
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC----ccC----------------c-eE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR----HFE----------------G-SY 206 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~----~F~----------------~-~~ 206 (869)
....++||-+.-++.|...+..+. -..+..++|+.|.||||+|+.+++.+-. ... . ..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 345679998888889988886442 3346689999999999999999986531 110 0 11
Q ss_pred EEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEE
Q 040255 207 FALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 207 ~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivT 268 (869)
.+. .+...++..+...+ ...... -..+++-++|+|+++ +..++|++
T Consensus 90 eld----aas~~gId~IReli-e~~~~~-----------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 90 EMD----AASNRGIDDIRELI-EQTKYK-----------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred Eec----cccccCHHHHHHHH-HHHhhC-----------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 110 11111233322211 111000 011456688999998 45666766
Q ss_pred eCch-hhhh-hcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 269 TRDK-QVLK-NCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 269 TR~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
|.+. .+.. .......+++.+++.++..+.+.+.+-..+.. -..+.+..|++.++|-+.-+..+
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 6653 2211 11234689999999999988887665332221 12466778999999988544433
No 148
>CHL00176 ftsH cell division protein; Validated
Probab=97.44 E-value=0.0013 Score=78.01 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=87.9
Q ss_pred CCcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCC
Q 040255 150 NKGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGG 219 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 219 (869)
.++++|.++..+++.+.+.. +....+-|.++|++|.|||+||++++.+.... |+... .+
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is--~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSIS--GS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eeecc--HH----
Confidence 35688988877777665421 11223458899999999999999999875432 22210 00
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCcEE
Q 040255 220 IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGSRV 265 (869)
Q Consensus 220 ~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gsrI 265 (869)
.+..... +.....-...+.......+.+|+|||++ .+-.|
T Consensus 251 --~f~~~~~----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 251 --EFVEMFV----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred --HHHHHhh----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeE
Confidence 0000000 0000000112233334567888888885 12346
Q ss_pred EEEeCchhhhhh-----cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCC
Q 040255 266 IITTRDKQVLKN-----CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQG 325 (869)
Q Consensus 266 ivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~G 325 (869)
|.||...+.+.. ...+..+.++..+.++-.+++..++-.... ........+++.+.|
T Consensus 325 IaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 325 IAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred EEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 666665443221 123467899999999999999887743211 112234566666666
No 149
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.43 E-value=0.0032 Score=66.50 Aligned_cols=177 Identities=14% Similarity=0.125 Sum_probs=104.8
Q ss_pred Ccceeccc---cHHHHHHhhccCC-CCeEEEEEEecCCchHHHHHHHHHHhhcCccC------ceEEEEeehhhhccCCH
Q 040255 151 KGLVGVEC---SIEEIESLLCIGS-EGVCKLRIWGIGGISKITIAGAVFNKISRHFE------GSYFALNVREAEETGGI 220 (869)
Q Consensus 151 ~~~vGr~~---~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~s~~~~~ 220 (869)
+.+||-.. -++.|+.+|.... ...+-+.|+|.+|+|||++++++.+.....++ .++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 44666543 3466666665432 44566899999999999999999986654443 233333 4556788
Q ss_pred HHHHHHHHHHhhcCCCCC-C----HHHHHHHHcc-CceEEEecCCC------------------------CCcEEEEEeC
Q 040255 221 KDLQKKLLSELSKDGNMR-N----IESQLNRLAR-KKVRIVFDDVT------------------------SGSRVIITTR 270 (869)
Q Consensus 221 ~~l~~~il~~l~~~~~~~-~----~~~l~~~L~~-kr~LlVLDDv~------------------------~gsrIivTTR 270 (869)
..+...|+..++..-... . .....+.++. +--+||+|.+. .=+-|.|-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 999999999998543222 2 2223344543 34489999997 2234555555
Q ss_pred chhhhhhc-----CCCeEEEeCCCCHHHHHH-HHHHhh--cC-CCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 271 DKQVLKNC-----WANKKYRMKELVYADAHK-LFCQWA--FG-GDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 271 ~~~v~~~~-----~~~~~~~l~~L~~~ea~~-Lf~~~a--f~-~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+---+-.. +....+.++....++-.. |+.... +. .....-...+++..|...++|+.=-+.
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 43221111 122456677666655443 332211 11 112223456888999999998864443
No 150
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0035 Score=74.33 Aligned_cols=175 Identities=13% Similarity=0.146 Sum_probs=98.7
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKL 227 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~i 227 (869)
...+++||-+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+....... .....+.-...+.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~~c~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGRPCGTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCCCCccCHHHHHH
Confidence 345679999999999988886432 234568999999999999999998764211000 00000000111111
Q ss_pred HHHhhc-----CC-CCCCHH---HHHHHH-----ccCceEEEecCCC------------------CCcEEEEEeCc-hhh
Q 040255 228 LSELSK-----DG-NMRNIE---SQLNRL-----ARKKVRIVFDDVT------------------SGSRVIITTRD-KQV 274 (869)
Q Consensus 228 l~~l~~-----~~-~~~~~~---~l~~~L-----~~kr~LlVLDDv~------------------~gsrIivTTR~-~~v 274 (869)
...... +. .....+ .+.+.+ .+++-++|+|+++ ....+|++|.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 110000 00 001111 111111 2456689999997 34455555543 333
Q ss_pred hhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 275 LKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 275 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
... ......++++.++.++....+...+-..+.. -..+....+++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 321 1234578899999999988887776433221 12456788999999988655443
No 151
>PRK08181 transposase; Validated
Probab=97.39 E-value=0.0005 Score=72.67 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=43.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRI 254 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~Ll 254 (869)
.-+.|+|++|+|||.||.++.+....+...+.|+. ...+...+..... ........+.+. +.=||
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~~----~~~~~~~l~~l~-~~dLL 171 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVARR----ELQLESAIAKLD-KFDLL 171 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHHh----CCcHHHHHHHHh-cCCEE
Confidence 45889999999999999999997655544455554 1334444422211 112223333333 34499
Q ss_pred EecCCC
Q 040255 255 VFDDVT 260 (869)
Q Consensus 255 VLDDv~ 260 (869)
||||+.
T Consensus 172 IIDDlg 177 (269)
T PRK08181 172 ILDDLA 177 (269)
T ss_pred EEeccc
Confidence 999996
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.39 E-value=0.0013 Score=79.41 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=39.2
Q ss_pred CCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 150 NKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+.++||+.++.++.+.|..... .-+.++|.+|+|||++|+.+++++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999998876322 3346899999999999999998653
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.37 E-value=0.0047 Score=63.24 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=40.5
Q ss_pred CcCCcceeccccHHHHHHhhcc--CCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 148 SKNKGLVGVECSIEEIESLLCI--GSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...+.++|.|.+.+.|.+-... ......-|.+||..|.|||+|++++.+++..+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999888753321 12344567789999999999999999977653
No 154
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.37 E-value=0.0016 Score=75.86 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=85.5
Q ss_pred CCcceeccccHHHHHHhhc---c-------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCC
Q 040255 150 NKGLVGVECSIEEIESLLC---I-------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGG 219 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 219 (869)
.++++|.+..++++.+++. . +....+-+.++|++|.|||+||+++++.....| +.. +
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~i----~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSI----S---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----eec----c----
Confidence 3568898877766665443 1 112234588999999999999999998754332 221 0
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCcEE
Q 040255 220 IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGSRV 265 (869)
Q Consensus 220 ~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gsrI 265 (869)
...+.... .+.....-...+.......+.+|++||++ .+-.|
T Consensus 121 ~~~~~~~~----~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 121 GSDFVEMF----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred HHHHHHHH----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 00011000 00000000111222223456788888875 11235
Q ss_pred EEEeCchhhh-----hhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 040255 266 IITTRDKQVL-----KNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 266 ivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 327 (869)
|.||...... .....+..++++..+.++-.++|..+.-...... ......+++.+.|.-
T Consensus 197 I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~s 260 (495)
T TIGR01241 197 IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFS 260 (495)
T ss_pred EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCC
Confidence 5566554322 1123456889999999999999987764322211 112346777777643
No 155
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.37 E-value=0.0016 Score=69.09 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...-+.++|++|+||||+|+.+++.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45668899999999999999999865
No 156
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.0041 Score=73.71 Aligned_cols=175 Identities=13% Similarity=0.094 Sum_probs=97.2
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-CceEEEEeehhhhccCCHHHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
.....++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.... +... ....+.-...+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~--------~~~Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT--------PEPCGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC--------CCCCcccHHHHH
Confidence 344678999999999998887542 235678999999999999999999764321 1000 000000011111
Q ss_pred HHHHhh------cCCCCCCHHHHHHH---H-----ccCceEEEecCCC------------------CCcEEEEEeCc-hh
Q 040255 227 LLSELS------KDGNMRNIESQLNR---L-----ARKKVRIVFDDVT------------------SGSRVIITTRD-KQ 273 (869)
Q Consensus 227 il~~l~------~~~~~~~~~~l~~~---L-----~~kr~LlVLDDv~------------------~gsrIivTTR~-~~ 273 (869)
+..... ........+.+++. + .+++-++|+|+++ ....+|++|.+ ..
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 110000 00000111222211 1 2455688999998 23344444443 33
Q ss_pred hhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 274 VLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 274 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
+... ......+++..++.++....+.+.+-..... -..+.+..+++.++|.+..+..+
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 2234678899999998888777665332211 12355778899999987654433
No 157
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.34 E-value=0.0007 Score=67.22 Aligned_cols=71 Identities=27% Similarity=0.321 Sum_probs=41.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRI 254 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~Ll 254 (869)
.-+.|+|.+|+|||.||.++.+++..+=..+.|+. ..++...+ ...........+.+.+.. -=||
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~----------~~~L~~~l----~~~~~~~~~~~~~~~l~~-~dlL 112 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT----------ASDLLDEL----KQSRSDGSYEELLKRLKR-VDLL 112 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----------HHHHHHHH----HCCHCCTTHCHHHHHHHT-SSCE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee----------cCceeccc----cccccccchhhhcCcccc-ccEe
Confidence 45889999999999999999986544323355654 12333333 222111123334444543 3477
Q ss_pred EecCCC
Q 040255 255 VFDDVT 260 (869)
Q Consensus 255 VLDDv~ 260 (869)
||||+.
T Consensus 113 ilDDlG 118 (178)
T PF01695_consen 113 ILDDLG 118 (178)
T ss_dssp EEETCT
T ss_pred cccccc
Confidence 899996
No 158
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.31 E-value=0.00018 Score=53.28 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=34.0
Q ss_pred cccceecccccccccccCccccCCCCCCEEecCCCCCCcccCC
Q 040255 604 SWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPE 646 (869)
Q Consensus 604 ~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~ 646 (869)
++|++|++++| .+..+|+.+++|++|+.|++++| .+..+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 47999999999 99999988999999999999996 4556654
No 159
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.31 E-value=0.0066 Score=69.73 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=76.6
Q ss_pred CcceeccccHHHHHHhhcc--------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc-CC-H
Q 040255 151 KGLVGVECSIEEIESLLCI--------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET-GG-I 220 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~~-~ 220 (869)
+++.|.+..++.+.+.... +-...+-|.++|++|.|||.+|+++++.....| +..+....... .+ -
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGes 303 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGES 303 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccChH
Confidence 5677887766666542211 113345688999999999999999999765432 11111110000 00 0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------------------CCcEEEEEeC
Q 040255 221 KDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------------------SGSRVIITTR 270 (869)
Q Consensus 221 ~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------------------~gsrIivTTR 270 (869)
....++++. ..-...+++|++|+++ .+--||.||.
T Consensus 304 e~~l~~~f~---------------~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 304 ESRMRQMIR---------------IAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred HHHHHHHHH---------------HHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 111112211 1112457778888876 1123455775
Q ss_pred chhhh-----hhcCCCeEEEeCCCCHHHHHHHHHHhhcC
Q 040255 271 DKQVL-----KNCWANKKYRMKELVYADAHKLFCQWAFG 304 (869)
Q Consensus 271 ~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 304 (869)
....+ .....+..+.++..+.++-.++|..+.-+
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 54322 22234578899999999999999887643
No 160
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.31 E-value=0.0036 Score=67.07 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=95.1
Q ss_pred CCcceeccccHHHHHHhhccCCCCeE-EEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHH
Q 040255 150 NKGLVGVECSIEEIESLLCIGSEGVC-KLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 228 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~~~~~~-vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il 228 (869)
.+.+.+|+.++..+..++...+...+ .|-|+|-.|.|||.+.+++++.... ..+|++.+ .-+....+..+|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~----ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCV----ECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehH----HhccHHHHHHHHH
Confidence 45688999999999999986655444 4589999999999999999997633 35788743 3467777888888
Q ss_pred HHhh-cCCCCC--C---------HHHHHH--HHc--cCceEEEecCCC---------------------CCcEEEEEeCc
Q 040255 229 SELS-KDGNMR--N---------IESQLN--RLA--RKKVRIVFDDVT---------------------SGSRVIITTRD 271 (869)
Q Consensus 229 ~~l~-~~~~~~--~---------~~~l~~--~L~--~kr~LlVLDDv~---------------------~gsrIivTTR~ 271 (869)
.++. .+.... . ...+.+ ... ++.++||||+++ ..--.|+++--
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 8874 111111 1 222222 122 468999999998 12233444332
Q ss_pred ---hhhhhhcCCC--eEEEeCCCCHHHHHHHHHHh
Q 040255 272 ---KQVLKNCWAN--KKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 272 ---~~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 301 (869)
+.-...+|.. -++..+.-+.+|-.+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2222223333 35677889999998888654
No 161
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.30 E-value=0.0015 Score=67.96 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=45.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVR 253 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~L 253 (869)
...+.++|.+|+|||+||.++++.+...-..++++. +..+...+-..... .....+.+.+.+. +.=+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~~--~~~~~~~~l~~l~-~~dl 165 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFSN--SETSEEQLLNDLS-NVDL 165 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHhh--ccccHHHHHHHhc-cCCE
Confidence 456889999999999999999997765544455553 22333333322211 1112334445555 3458
Q ss_pred EEecCCC
Q 040255 254 IVFDDVT 260 (869)
Q Consensus 254 lVLDDv~ 260 (869)
|||||+.
T Consensus 166 LvIDDig 172 (244)
T PRK07952 166 LVIDEIG 172 (244)
T ss_pred EEEeCCC
Confidence 8899996
No 162
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=2.3e-05 Score=89.09 Aligned_cols=99 Identities=30% Similarity=0.437 Sum_probs=70.9
Q ss_pred ccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC---Ccccceeeccc
Q 040255 582 NLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARN 658 (869)
Q Consensus 582 ~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~ 658 (869)
.|...+.++|.+..+-.++.-++.|+.|||++| .+.... .+..|++|++|||++ |.+..+|.. -+.|+.|.+.|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecc
Confidence 345556667777777777777888888888888 777765 688888888888888 567777765 24577788777
Q ss_pred CCCCccccCCCCCCccceEEeccCCCC
Q 040255 659 CTSLEKLPAGLSSMSSVLYVNLCNFLK 685 (869)
Q Consensus 659 c~~l~~lp~~~~~l~~L~~l~l~~~~~ 685 (869)
+.++++- .+.+|.+|..||++.|.-
T Consensus 242 -N~l~tL~-gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 242 -NALTTLR-GIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred -cHHHhhh-hHHhhhhhhccchhHhhh
Confidence 3555554 356777777777776543
No 163
>PRK09183 transposase/IS protein; Provisional
Probab=97.29 E-value=0.00073 Score=71.43 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+.|+|++|+|||+||.++.....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4577999999999999999988643
No 164
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0019 Score=68.72 Aligned_cols=178 Identities=16% Similarity=0.161 Sum_probs=103.8
Q ss_pred cceeccccHHHHHHhhccC-----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehh-hhccC-
Q 040255 152 GLVGVECSIEEIESLLCIG-----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVRE-AEETG- 218 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-~s~~~- 218 (869)
.+=|.+..+++|.+..... =+..+=|.++|++|.|||-||++|+++....| +..++. .-+++
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgSElVqKYi 226 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGSELVQKYI 226 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccHHHHHHHh
Confidence 3447888888887765421 13445588999999999999999999876544 432221 00000
Q ss_pred -CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCc
Q 040255 219 -GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGS 263 (869)
Q Consensus 219 -~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gs 263 (869)
.=.++.++++.-.. .+.+..|.+|.++ ..-
T Consensus 227 GEGaRlVRelF~lAr---------------ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 227 GEGARLVRELFELAR---------------EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred ccchHHHHHHHHHHh---------------hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe
Confidence 00122222222111 2456677777776 445
Q ss_pred EEEEEeCchhhhh-----hcCCCeEEEeCCCCHHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHHcCCCc----hhHHHH
Q 040255 264 RVIITTRDKQVLK-----NCWANKKYRMKELVYADAHKLFCQWAFGGD-HLDASHIELTDKAIKYAQGVP----LALKVL 333 (869)
Q Consensus 264 rIivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlP----Lal~~~ 333 (869)
|||..|-..+++. --..+..++++..+.+.-.++|.-|+-+-. ...-+++ .+++.+.|.- -|+.+=
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAICTE 367 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHHHH
Confidence 8888776555543 223567899998888888889988875433 2233444 4455566554 334444
Q ss_pred Hhhhc---CC---CHHHHHHHHHHHh
Q 040255 334 GCYLC---GR---SKEVWESAMRKLE 353 (869)
Q Consensus 334 g~~L~---~~---~~~~w~~~l~~l~ 353 (869)
|++++ .+ +.+++..+.++.-
T Consensus 368 AGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 368 AGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HhHHHHHhccCeecHHHHHHHHHHHH
Confidence 55543 12 4566666666643
No 165
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.021 Score=67.69 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=97.5
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC-----------------------ccCc
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR-----------------------HFEG 204 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----------------------~F~~ 204 (869)
...++++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+...+.. +|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 34567999999999999888643 22356789999999999999999886531 1221
Q ss_pred eEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEE
Q 040255 205 SYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVI 266 (869)
Q Consensus 205 ~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIi 266 (869)
.. +. .....++..+.. ++.++.... ..+++-++|+|+++ .++.+|
T Consensus 93 ~~-ld----~~~~~~vd~Ir~-li~~~~~~P-----------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 93 HE-LD----AASNNSVDDIRN-LIEQVRIPP-----------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EE-ec----ccccCCHHHHHH-HHHHHhhCc-----------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 11 11 011112222221 111111000 12345588999997 344555
Q ss_pred E-EeCchhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 040255 267 I-TTRDKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 267 v-TTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 330 (869)
+ ||+...+... .....++++++++.++....+...+-..+.. -..+.+..|++.++|-.--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 4 5444444432 2345689999999999998888766433221 12356788899999866433
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.0014 Score=61.40 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.6
Q ss_pred EEEEecCCchHHHHHHHHHHhhcC
Q 040255 177 LRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
|.|+|++|+||||+|+.+++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 579999999999999999998753
No 167
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=2.5e-05 Score=80.09 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=83.2
Q ss_pred cccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc-----ccccchhcccccccc-cC-CCC
Q 040255 527 ICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE-----LENLEYLTVKGTTIR-EL-PES 599 (869)
Q Consensus 527 ~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-----l~~L~~L~L~~n~i~-~l-P~~ 599 (869)
..+.+|+.|.+.++++. ..+-..+.+-.+|+.|+|++|+.+.+.... ++.|..|+|++|.+. +. -..
T Consensus 207 s~C~kLk~lSlEg~~Ld------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLD------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHhhhhccccccccC------cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 34556666666666554 223334556667777777777766554433 566777777777654 11 111
Q ss_pred cCC-ccccceecccccccc---cccCccccCCCCCCEEecCCCCCCcc--cCC--CCcccceeecccCCCCccccC---C
Q 040255 600 LGR-LSWVKRLILSNNSNL---ERIPESIRHLSKLTFLFISHCERLQT--LPE--LPCNLGLLSARNCTSLEKLPA---G 668 (869)
Q Consensus 600 i~~-l~~L~~L~Ls~n~~l---~~lP~~i~~L~~L~~L~L~~c~~l~~--lp~--~~~~L~~L~l~~c~~l~~lp~---~ 668 (869)
+.+ -.+|..|+|+|+..- ..+..-..++++|.+|||++|..++. +.+ .++.|++|.++.|-.+ +|. .
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~ 358 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE 358 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeee
Confidence 111 235677777776211 11111135667777777777766554 001 1466777777777543 232 3
Q ss_pred CCCCccceEEeccCC
Q 040255 669 LSSMSSVLYVNLCNF 683 (869)
Q Consensus 669 ~~~l~~L~~l~l~~~ 683 (869)
++..++|.+||.-++
T Consensus 359 l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC 373 (419)
T ss_pred eccCcceEEEEeccc
Confidence 456677888885543
No 168
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.23 E-value=0.00043 Score=67.67 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=64.0
Q ss_pred cccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccC--CCCcCC
Q 040255 529 AEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL--PESLGR 602 (869)
Q Consensus 529 ~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l--P~~i~~ 602 (869)
..+...++|++|.+..+ . .+..++.|.+|.|++|. +..+-+. +++|+.|.|.+|+|.++ -..+..
T Consensus 41 ~d~~d~iDLtdNdl~~l----~----~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~ 111 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL----D----NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS 111 (233)
T ss_pred ccccceecccccchhhc----c----cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhcc
Confidence 34555666666666533 1 23356777777777776 5555443 67788888888877755 234556
Q ss_pred ccccceecccccccccccCc----cccCCCCCCEEecCC
Q 040255 603 LSWVKRLILSNNSNLERIPE----SIRHLSKLTFLFISH 637 (869)
Q Consensus 603 l~~L~~L~Ls~n~~l~~lP~----~i~~L~~L~~L~L~~ 637 (869)
++.|++|.+-+| .+...+. -+..+++|+.||...
T Consensus 112 ~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 778888888888 5655543 267778888887764
No 169
>PRK12377 putative replication protein; Provisional
Probab=97.23 E-value=0.0017 Score=67.87 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=45.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVR 253 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~L 253 (869)
...+.|+|.+|+|||+||.++++.+..+...+.|+. . ..+...+-...... .....+.+.+ .+-=|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~----~------~~l~~~l~~~~~~~---~~~~~~l~~l-~~~dL 166 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT----V------PDVMSRLHESYDNG---QSGEKFLQEL-CKVDL 166 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE----H------HHHHHHHHHHHhcc---chHHHHHHHh-cCCCE
Confidence 357889999999999999999998766555556665 1 23333333222111 0112223333 34569
Q ss_pred EEecCCC
Q 040255 254 IVFDDVT 260 (869)
Q Consensus 254 lVLDDv~ 260 (869)
|||||+.
T Consensus 167 LiIDDlg 173 (248)
T PRK12377 167 LVLDEIG 173 (248)
T ss_pred EEEcCCC
Confidence 9999995
No 170
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.021 Score=67.05 Aligned_cols=168 Identities=10% Similarity=0.065 Sum_probs=98.0
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-----cCce-EEEEeehhh------
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-----FEGS-YFALNVREA------ 214 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~-~~~~~~~~~------ 214 (869)
|....+++|-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. +.+. |.-+ +..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C--~~i~~~~~~ 88 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC--KSIDNDNSL 88 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH--HHHHcCCCC
Confidence 344567999999999999988743 234568899999999999999999965321 1110 0000 000
Q ss_pred -------hccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEe
Q 040255 215 -------EETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITT 269 (869)
Q Consensus 215 -------s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTT 269 (869)
....++..+. ++...+. ..-..+++-++|+|+++ +...+|.+|
T Consensus 89 dv~~idgas~~~vddIr-~l~e~~~-----------~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 89 DVIEIDGASNTSVQDVR-QIKEEIM-----------FPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred CeEEecCcccCCHHHHH-HHHHHHH-----------hchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEec
Confidence 0001111111 1111100 00013566688999997 334445454
Q ss_pred C-chhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 270 R-DKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 270 R-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
. ...+... ......++..+++.++..+.+...+...... -..+.+..+++.++|.+..+.
T Consensus 157 te~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 157 TEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred CChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 3 3333322 2234578999999999988887776443322 224667788899999775443
No 171
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.20 E-value=0.00056 Score=76.31 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=63.4
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC--ccCceEEEEeehhhhccCCHHHHHHHHH
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR--HFEGSYFALNVREAEETGGIKDLQKKLL 228 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~s~~~~~~~l~~~il 228 (869)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+++++.+.. .|+.+.|+. +++..+...+...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhcccC
Confidence 4578888888888888863 246778999999999999999997643 466677776 444444444433221
Q ss_pred HHhhcCCCCC--C--HHHHHHHHc--cCceEEEecCCC
Q 040255 229 SELSKDGNMR--N--IESQLNRLA--RKKVRIVFDDVT 260 (869)
Q Consensus 229 ~~l~~~~~~~--~--~~~l~~~L~--~kr~LlVLDDv~ 260 (869)
.. ...... . .+.+..... .+++++|+|+++
T Consensus 247 P~--~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEIN 282 (459)
T PRK11331 247 PN--GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEIN 282 (459)
T ss_pred CC--CCCeEecCchHHHHHHHHHhcccCCcEEEEehhh
Confidence 10 000010 1 222222222 468999999998
No 172
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0078 Score=65.80 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=80.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCcc---------------------CceEEEEeehhhhccCCHHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHF---------------------EGSYFALNVREAEETGGIKDLQKKLLSELS 232 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~~~~~s~~~~~~~l~~~il~~l~ 232 (869)
...+.++|+.|+||||+|+.++..+-.+- +...++.-. +.+....++.+.+ +...+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~-~~~~~i~id~iR~-l~~~~~ 99 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPE-EADKTIKVDQVRE-LVSFVV 99 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-CCCCCCCHHHHHH-HHHHHh
Confidence 45688999999999999999998653211 111222100 0001112222221 222111
Q ss_pred cCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCch-hhhhh-cCCCeEEEeCCCCHH
Q 040255 233 KDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDK-QVLKN-CWANKKYRMKELVYA 292 (869)
Q Consensus 233 ~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~-~v~~~-~~~~~~~~l~~L~~~ 292 (869)
.. . ..+++-++|+|+++ .+..+|+||.+. .++.. ......+.+.+++.+
T Consensus 100 ~~----------~-~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~ 168 (328)
T PRK05707 100 QT----------A-QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNE 168 (328)
T ss_pred hc----------c-ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHH
Confidence 00 0 12333345679998 456777777665 33322 233568999999999
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 293 DAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 293 ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
++.+.+.... . . ...+.+..++..++|.|+....+
T Consensus 169 ~~~~~L~~~~-~-~----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 169 ESLQWLQQAL-P-E----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHhc-c-c----CChHHHHHHHHHcCCCHHHHHHH
Confidence 9998887653 1 1 11234567789999999765544
No 173
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.13 E-value=0.0037 Score=67.11 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
-|.++|++|.||||+|+.++..+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999888553
No 174
>PRK06526 transposase; Provisional
Probab=97.12 E-value=0.00086 Score=70.47 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=22.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..-+.|+|++|+|||+||.++..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 345889999999999999999986543
No 175
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.00025 Score=72.99 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=100.1
Q ss_pred cccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCC--cc---ccccccceeeecCCCcccccccccccCC
Q 040255 479 YAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLK--TL---NICAEKLVSLKMPCTKVEQLWDDVQRLP 553 (869)
Q Consensus 479 ~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~--~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp 553 (869)
..+.+||.|++|+++.|......+.+. +|..+|+.|-+.+..+. .. .-.++.+++|+|+.|++.++...-....
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e 169 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE 169 (418)
T ss_pred HHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc
Confidence 356789999999998765544444443 34578888888776542 22 4456677888888887776533221111
Q ss_pred CccCCCCCccEEEecCCCCCccc-----CccccccchhcccccccccC--CCCcCCccccceecccccccccccCc--cc
Q 040255 554 SSLCTFKTPITFEIIDCKMLERL-----PDELENLEYLTVKGTTIREL--PESLGRLSWVKRLILSNNSNLERIPE--SI 624 (869)
Q Consensus 554 ~~~~~l~~L~~L~L~~~~~l~~l-----p~~l~~L~~L~L~~n~i~~l--P~~i~~l~~L~~L~Ls~n~~l~~lP~--~i 624 (869)
. --+.+++|.+.+|...... -..++|+..+.+..|.+... -.+...++.+-.|+|+.| ++.+.-+ .+
T Consensus 170 ~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~L 245 (418)
T KOG2982|consen 170 D---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDAL 245 (418)
T ss_pred c---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHH
Confidence 1 1124555555555422211 11166777777777776644 334555777778888888 7776542 36
Q ss_pred cCCCCCCEEecCCCCCCcccC
Q 040255 625 RHLSKLTFLFISHCERLQTLP 645 (869)
Q Consensus 625 ~~L~~L~~L~L~~c~~l~~lp 645 (869)
..+++|..|.+++++....+.
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cCCchhheeeccCCccccccc
Confidence 777888888888876655543
No 176
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.028 Score=61.07 Aligned_cols=173 Identities=12% Similarity=0.054 Sum_probs=100.0
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc---------------cCceEEEEeehhhh
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH---------------FEGSYFALNVREAE 215 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------F~~~~~~~~~~~~s 215 (869)
.+++|-+..++.+.+.+..+ .-.....++|+.|+||+++|.++++.+-.. ++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 45889999999998888643 123688899999999999999999864221 2223343311000
Q ss_pred ccCCHHHHHHHHHHHhh---cCCCCCCHH---HHHHHH-----ccCceEEEecCCC-----------------CCcEEEE
Q 040255 216 ETGGIKDLQKKLLSELS---KDGNMRNIE---SQLNRL-----ARKKVRIVFDDVT-----------------SGSRVII 267 (869)
Q Consensus 216 ~~~~~~~l~~~il~~l~---~~~~~~~~~---~l~~~L-----~~kr~LlVLDDv~-----------------~gsrIiv 267 (869)
... .+....+...+ .....+.++ .+.+.+ .+.+-++|+|+++ +...+|+
T Consensus 82 ~g~---~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fIL 158 (314)
T PRK07399 82 QGK---LITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLIL 158 (314)
T ss_pred ccc---ccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 000 00000111111 000111222 333333 3466788999997 4445555
Q ss_pred EeCc-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 268 TTRD-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 268 TTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
+|.+ ..++.. ......+++.+++.++..+.+........ .......++..++|.|.....+
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHHH
Confidence 5544 344332 23457899999999999999987642111 1111357889999999765543
No 177
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.012 Score=69.16 Aligned_cols=171 Identities=12% Similarity=0.045 Sum_probs=94.6
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
|....+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.+...-... ....+.-.-.+.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~C~~C~~ 81 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNECEICKA 81 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccHHHHH
Confidence 3445789999999999999887542 345677899999999999999988653210000 000000000000
Q ss_pred HHHHhhc------CCCCCCHH---HHHHH-----HccCceEEEecCCC-----------------C-CcEEEE-EeCchh
Q 040255 227 LLSELSK------DGNMRNIE---SQLNR-----LARKKVRIVFDDVT-----------------S-GSRVII-TTRDKQ 273 (869)
Q Consensus 227 il~~l~~------~~~~~~~~---~l~~~-----L~~kr~LlVLDDv~-----------------~-gsrIiv-TTR~~~ 273 (869)
+...... .......+ .+.+. ..+++-++|+|+++ + ...+|+ ||....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 0000000 00000111 22222 13456688999998 2 334344 444433
Q ss_pred hhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 040255 274 VLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 274 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
+... ......+++.+++.++..+.+...+-..+... ..+....+++.++|-+..
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 3322 12346788999999998888877663322211 235567788888887654
No 178
>PRK06921 hypothetical protein; Provisional
Probab=97.07 E-value=0.0011 Score=70.20 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=29.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCc-cCceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRH-FEGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 209 (869)
...+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568899999999999999999987655 34456665
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0038 Score=72.06 Aligned_cols=141 Identities=16% Similarity=0.195 Sum_probs=84.8
Q ss_pred CcceeccccHHHHHHhhccC----CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH
Q 040255 151 KGLVGVECSIEEIESLLCIG----SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
.+-+|.++-.++|.+.|... .-.-++++++|++|+|||.||+.+++-+...|-.. =+.-+++.+. +..=.+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~-sLGGvrDEAE---IRGHRRT 398 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI-SLGGVRDEAE---IRGHRRT 398 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE-ecCccccHHH---hcccccc
Confidence 45699999999999988642 22337999999999999999999999887766321 1112222211 1100111
Q ss_pred HHHHhhcCCCCCCHHHHHH---HHccCceEEEecCCC-----------------------------------CCcEE-EE
Q 040255 227 LLSELSKDGNMRNIESQLN---RLARKKVRIVFDDVT-----------------------------------SGSRV-II 267 (869)
Q Consensus 227 il~~l~~~~~~~~~~~l~~---~L~~kr~LlVLDDv~-----------------------------------~gsrI-iv 267 (869)
....+ ...+.+ ..+.+.=+++||.++ .=|.| .|
T Consensus 399 YIGam--------PGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 399 YIGAM--------PGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ccccC--------ChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 11111 112222 224456688899987 22455 45
Q ss_pred EeCch-h-h-hhhcCCCeEEEeCCCCHHHHHHHHHHhhc
Q 040255 268 TTRDK-Q-V-LKNCWANKKYRMKELVYADAHKLFCQWAF 303 (869)
Q Consensus 268 TTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 303 (869)
||-+. + + .......+++++.+.+.+|-++.-.++..
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 55432 1 1 12223457899999999998887776653
No 180
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.06 E-value=0.002 Score=67.64 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=54.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC-------CCCCC--------
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD-------GNMRN-------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~-------~~~~~-------- 239 (869)
+.++|.|..|.||||||+.+++.++.+|+..+++..+++-. ..+.++.+++...-..+ ..+..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~--~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT--REGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc--HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999999988888888887665532 23344444444321100 00000
Q ss_pred --HHHHHHHH--c-cCceEEEecCC
Q 040255 240 --IESQLNRL--A-RKKVRIVFDDV 259 (869)
Q Consensus 240 --~~~l~~~L--~-~kr~LlVLDDv 259 (869)
.-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 22234455 3 88999999998
No 181
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0063 Score=71.85 Aligned_cols=169 Identities=12% Similarity=0.115 Sum_probs=95.8
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc--cC---c-eE-------------EE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH--FE---G-SY-------------FA 208 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~---~-~~-------------~~ 208 (869)
...+++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... .. + .| |+
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF 91 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee
Confidence 34567999998888898888643 223567899999999999999999865321 10 0 00 11
Q ss_pred EeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEE-Ee
Q 040255 209 LNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVII-TT 269 (869)
Q Consensus 209 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIiv-TT 269 (869)
. +. .....++..+ +++...+... -..+++-++|+|+++ +...+|+ ||
T Consensus 92 e-id-~~s~~~v~~i-r~l~~~~~~~-----------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 92 E-ID-GASNTGVDDI-RELRENVKYL-----------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred e-ee-ccCccCHHHH-HHHHHHHHhc-----------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 1 00 0001122221 1121111100 012345578899997 3445554 44
Q ss_pred Cchhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHHH
Q 040255 270 RDKQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVP-LALKVL 333 (869)
Q Consensus 270 R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 333 (869)
....+... ......++++.++.++....+...+-..... -..+....+++.++|.. .|+..+
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444432 2234678899999999887776655322211 12355677888888865 444444
No 182
>CHL00181 cbbX CbbX; Provisional
Probab=97.05 E-value=0.0094 Score=63.98 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+.++|.+|+||||+|+.+++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999998854
No 183
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.04 E-value=5.7e-05 Score=79.41 Aligned_cols=127 Identities=12% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCeeEEecCCCCCCcc--------ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccC----
Q 040255 510 AEVRHLEWPQCPLKTL--------NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLP---- 577 (869)
Q Consensus 510 ~~L~~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp---- 577 (869)
+.||++....|.+..- +...+.|..+.+++|.|.. +++.-+-..+..+++|++|||.+|.+...-.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~--eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP--EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC--chhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3667777666665443 2223566666666666542 2222223345666777777777766321100
Q ss_pred ---ccccccchhcccccccccC-CCCc-----CCccccceecccccccccc-----cCccccCCCCCCEEecCCCC
Q 040255 578 ---DELENLEYLTVKGTTIREL-PESL-----GRLSWVKRLILSNNSNLER-----IPESIRHLSKLTFLFISHCE 639 (869)
Q Consensus 578 ---~~l~~L~~L~L~~n~i~~l-P~~i-----~~l~~L~~L~Ls~n~~l~~-----lP~~i~~L~~L~~L~L~~c~ 639 (869)
+.+++|+.|+++.|.++.= -..+ ...++|+.|.|.+| .+.. +-.++...+.|..|+|++|.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 0145666666666655421 0001 12456666666666 4332 22334455666666666644
No 184
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.04 E-value=4.9e-05 Score=69.40 Aligned_cols=84 Identities=17% Similarity=0.314 Sum_probs=59.8
Q ss_pred cceeeecCCCcccccccccccCCCccC-CCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCCcccc
Q 040255 531 KLVSLKMPCTKVEQLWDDVQRLPSSLC-TFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGRLSWV 606 (869)
Q Consensus 531 ~L~~L~L~~n~l~~l~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L 606 (869)
.|...+|++|.+.+ +|+.+. .++.+++|+|++|. +..+|.. ++.|+.|+++.|.+...|.-|..|.+|
T Consensus 54 el~~i~ls~N~fk~-------fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK-------FPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKL 125 (177)
T ss_pred eEEEEecccchhhh-------CCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhH
Confidence 45555666665543 333332 34467788888776 7788877 788888888888888888888778888
Q ss_pred ceecccccccccccCcc
Q 040255 607 KRLILSNNSNLERIPES 623 (869)
Q Consensus 607 ~~L~Ls~n~~l~~lP~~ 623 (869)
-.|+..+| ....||-.
T Consensus 126 ~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 126 DMLDSPEN-ARAEIDVD 141 (177)
T ss_pred HHhcCCCC-ccccCcHH
Confidence 88888887 77777755
No 185
>PRK08118 topology modulation protein; Reviewed
Probab=97.02 E-value=0.00047 Score=67.74 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=27.1
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcC---ccCceEEE
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISR---HFEGSYFA 208 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~~ 208 (869)
.|.|+|++|+||||||+.+++++.- +||...|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5889999999999999999997543 46767654
No 186
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.01 E-value=0.0021 Score=70.11 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=28.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.-+.++|.+|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66899999999999999999997755434556665
No 187
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.98 E-value=0.0071 Score=60.35 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=61.6
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC-cc-CceEEEEeehhhhccCCHHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR-HF-EGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F-~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
....++||-++-++++.-... +++++-+.|.||+|+||||-+..+++++-. .| +++.=+. .|+..++.-+..
T Consensus 24 ~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASdeRGIDvVRn 97 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDERGIDVVRN 97 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----CccccccHHHHH
Confidence 344679999999988876554 356777889999999999999999986533 23 2333232 455556655555
Q ss_pred HHHHHhhcCCCCCCHHHHHHHH-ccCceEEEecCCC
Q 040255 226 KLLSELSKDGNMRNIESQLNRL-ARKKVRIVFDDVT 260 (869)
Q Consensus 226 ~il~~l~~~~~~~~~~~l~~~L-~~kr~LlVLDDv~ 260 (869)
+|-.-.... -.| .++.-.+|||..+
T Consensus 98 ~IK~FAQ~k----------v~lp~grhKIiILDEAD 123 (333)
T KOG0991|consen 98 KIKMFAQKK----------VTLPPGRHKIIILDEAD 123 (333)
T ss_pred HHHHHHHhh----------ccCCCCceeEEEeeccc
Confidence 443221100 001 2455578889887
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.96 E-value=0.0067 Score=74.23 Aligned_cols=154 Identities=15% Similarity=0.131 Sum_probs=85.5
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc-C
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET-G 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~ 218 (869)
.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- .+. ..+.... .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~~~l~~~~v 528 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-GPEILSKWV 528 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hHHHhhccc
Confidence 5578888888877766531 1123445889999999999999999998764431 111 1110000 0
Q ss_pred -CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC--------------------------------CCcEE
Q 040255 219 -GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT--------------------------------SGSRV 265 (869)
Q Consensus 219 -~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~--------------------------------~gsrI 265 (869)
......++++... -...+.+|++|+++ .+--|
T Consensus 529 Gese~~i~~~f~~A---------------~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 529 GESEKAIREIFRKA---------------RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred CcHHHHHHHHHHHH---------------HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 0111122222211 12345666667664 12235
Q ss_pred EEEeCchhhhhhc-----CCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 040255 266 IITTRDKQVLKNC-----WANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 266 ivTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 327 (869)
|.||...+.+... ..+..+.++..+.++-.++|..+.-+... +..+ ...+++.+.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 6677555433211 24568899999999999999766532221 1122 245556666644
No 189
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.011 Score=72.26 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=39.8
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
+++.|++..+++|.+.+.. +-...+-|.++|++|.||||||+++++.....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 5688999999998877632 11234568899999999999999999977544
No 190
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.012 Score=67.77 Aligned_cols=145 Identities=15% Similarity=0.110 Sum_probs=82.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehh-hhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCce
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVRE-AEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKV 252 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~ 252 (869)
..-|.|.|..|+|||+||+++++.+... ..+++..+.. ......++.+++.+-. ...+.+...+-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~~------------vfse~~~~~PS 496 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLNN------------VFSEALWYAPS 496 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHHH------------HHHHHHhhCCc
Confidence 3468899999999999999999987642 3333332211 1222335555554422 34456677889
Q ss_pred EEEecCCC---------------------------------CCcEE--EEEeCchhhhhh-----cCCCeEEEeCCCCHH
Q 040255 253 RIVFDDVT---------------------------------SGSRV--IITTRDKQVLKN-----CWANKKYRMKELVYA 292 (869)
Q Consensus 253 LlVLDDv~---------------------------------~gsrI--ivTTR~~~v~~~-----~~~~~~~~l~~L~~~ 292 (869)
+|||||++ .+.+| |.|....+-... .-......++.+...
T Consensus 497 iIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~ 576 (952)
T KOG0735|consen 497 IIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVT 576 (952)
T ss_pred EEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchh
Confidence 99999997 44453 334433222111 112346688888888
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHHHH
Q 040255 293 DAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGV-PLALKVLG 334 (869)
Q Consensus 293 ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 334 (869)
+-.++++... .... .....+...-+..+|+|. |.-+.++-
T Consensus 577 ~R~~IL~~~~-s~~~-~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 577 RRKEILTTIF-SKNL-SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred HHHHHHHHHH-Hhhh-hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 7777776544 2221 112223333377777764 55554443
No 191
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.92 E-value=0.00099 Score=71.96 Aligned_cols=63 Identities=32% Similarity=0.534 Sum_probs=55.6
Q ss_pred CcEEEccccccccCchhHHHHHHHccCCceEEecC-CccCCCcchHHHHHHhhhhceeeeeecccc
Q 040255 2 YDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERY 66 (869)
Q Consensus 2 ~dvF~sf~g~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y 66 (869)
.|||||||.. |-...++-+.-.|.-.|++||||- ++..|. +...|++.|+.++-+|.|++||-
T Consensus 613 ~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~s 676 (832)
T KOG3678|consen 613 IDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNS 676 (832)
T ss_pred cceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcch
Confidence 6999999876 557889999999999999999996 788776 56689999999999999999984
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.91 E-value=0.0025 Score=59.86 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=27.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..+.|+|++|+||||+|+.++..+.......+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 46889999999999999999997766543344443
No 193
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.85 E-value=0.0059 Score=74.38 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=41.5
Q ss_pred CcceeccccHHHHHHhhcc----CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 151 KGLVGVECSIEEIESLLCI----GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
.+.+|.+.-+++|.++|.. +.....++.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4589999999999888763 122345799999999999999999998766544
No 194
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.84 E-value=0.014 Score=63.25 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
...+.++|||++|.|||.+|+++++++...|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 4567899999999999999999999876553
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.82 E-value=0.013 Score=71.61 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=38.6
Q ss_pred CcceeccccHHHHHHhhccC-------CCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 151 KGLVGVECSIEEIESLLCIG-------SEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..++|-+..++.+...+... .....++.++|+.|+|||+||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 56889999888888776531 12345688999999999999999999774
No 196
>PRK07261 topology modulation protein; Provisional
Probab=96.80 E-value=0.004 Score=61.51 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 197
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.00065 Score=69.97 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=41.3
Q ss_pred CCeeEEecCCCCCCcc------ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCc-----ccCc
Q 040255 510 AEVRHLEWPQCPLKTL------NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLE-----RLPD 578 (869)
Q Consensus 510 ~~L~~L~l~~~~l~~l------~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~-----~lp~ 578 (869)
..++.|++.+|.+... .-+++.|+.|++++|.+.. .++.+| ..+.+|++|.|.|.. +. ++-+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s---~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s~l~ 143 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS---DIKSLP---LPLKNLRVLVLNGTG-LSWTQSTSSLD 143 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC---ccccCc---ccccceEEEEEcCCC-CChhhhhhhhh
Confidence 4566666766666554 3456667777777776652 344444 234566666666543 21 1111
Q ss_pred cccccchhccccccc
Q 040255 579 ELENLEYLTVKGTTI 593 (869)
Q Consensus 579 ~l~~L~~L~L~~n~i 593 (869)
.++.++.|.++.|++
T Consensus 144 ~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSL 158 (418)
T ss_pred cchhhhhhhhccchh
Confidence 144455555555543
No 198
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.76 E-value=0.00053 Score=81.88 Aligned_cols=77 Identities=26% Similarity=0.314 Sum_probs=38.8
Q ss_pred CCCccEEEecCCCCC----cccCccccccchhcccccccccCCCCcCCccccceecccccccccccC--ccccCCCCCCE
Q 040255 559 FKTPITFEIIDCKML----ERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIP--ESIRHLSKLTF 632 (869)
Q Consensus 559 l~~L~~L~L~~~~~l----~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP--~~i~~L~~L~~ 632 (869)
||+|+.|.++|-... ..+-..++||..||+|+++++.+ .+|++|++|+.|.+.+= .+..-+ ..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHHHhcccCCCe
Confidence 455555555553211 11112255666666666666655 55666666666655543 333222 12455666666
Q ss_pred EecCC
Q 040255 633 LFISH 637 (869)
Q Consensus 633 L~L~~ 637 (869)
||+|.
T Consensus 225 LDIS~ 229 (699)
T KOG3665|consen 225 LDISR 229 (699)
T ss_pred eeccc
Confidence 66654
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.75 E-value=0.0067 Score=71.49 Aligned_cols=53 Identities=23% Similarity=0.158 Sum_probs=43.3
Q ss_pred cCcCCcceeccccHHHHHHhhccCC---CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGS---EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
|...++++|-+..++++..++.... ...+++.|+|++|.||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556789999999999999886532 3446799999999999999999998654
No 200
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.72 E-value=0.0029 Score=62.15 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=32.6
Q ss_pred ceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 153 LVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 153 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
+||.+..+.++.+.+..-......|.|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888887777543222345669999999999999999993
No 201
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0047 Score=69.73 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=41.1
Q ss_pred CcceeccccHHHHHHhhccCC----------CCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 151 KGLVGVECSIEEIESLLCIGS----------EGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~----------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
+++=|++..+.+|.+++..-. ...+=|.++|++|.|||.||++++++..--|
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 567899999999988875411 3345688999999999999999999875443
No 202
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.70 E-value=0.005 Score=63.45 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=29.3
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.++|+|..|.|||||...+.......|+.+..++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5679999999999999999998999997666554
No 203
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.013 Score=65.03 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH-HHHHhhcCCCCCCHHHHHHHHccC
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK-LLSELSKDGNMRNIESQLNRLARK 250 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~-il~~l~~~~~~~~~~~l~~~L~~k 250 (869)
.....|.+.|++|+|||+||..++. ...|+.+--++ . ...-++.+-.+- -+ .....+.-+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS---p-e~miG~sEsaKc~~i-----------~k~F~DAYkS~ 598 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS---P-EDMIGLSESAKCAHI-----------KKIFEDAYKSP 598 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC---h-HHccCccHHHHHHHH-----------HHHHHHhhcCc
Confidence 4567788999999999999999885 45677554433 1 011111111110 00 11122233455
Q ss_pred ceEEEecCCC-----------------------------CCcEE--EEEeCchhhhhhcCC----CeEEEeCCCCH-HHH
Q 040255 251 KVRIVFDDVT-----------------------------SGSRV--IITTRDKQVLKNCWA----NKKYRMKELVY-ADA 294 (869)
Q Consensus 251 r~LlVLDDv~-----------------------------~gsrI--ivTTR~~~v~~~~~~----~~~~~l~~L~~-~ea 294 (869)
--.||+||++ .|-|. +-||-...++..++. ...|.|+.++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 5689999996 45565 447778888888863 35789999988 777
Q ss_pred HHHHHHh
Q 040255 295 HKLFCQW 301 (869)
Q Consensus 295 ~~Lf~~~ 301 (869)
.+.++..
T Consensus 679 ~~vl~~~ 685 (744)
T KOG0741|consen 679 LEVLEEL 685 (744)
T ss_pred HHHHHHc
Confidence 7777654
No 204
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.65 E-value=0.0079 Score=65.76 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-CceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCC-
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMR- 238 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~- 238 (869)
.++...+..-..+ ..++|+|.+|.|||||++.+++.+..+. +..+++..+.+ ....+.++.+.+...+.....+.
T Consensus 121 ~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred HhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCC
Confidence 3455555432222 4568999999999999999999876654 44334433433 23456777777766655322111
Q ss_pred --C-------HHHHHHHH--ccCceEEEecCCC
Q 040255 239 --N-------IESQLNRL--ARKKVRIVFDDVT 260 (869)
Q Consensus 239 --~-------~~~l~~~L--~~kr~LlVLDDv~ 260 (869)
. ...+.+++ .+++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1 11122222 5899999999994
No 205
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.64 E-value=0.0016 Score=60.19 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+|+|.|++|+||||+|+.+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 206
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.63 E-value=0.026 Score=69.39 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=40.1
Q ss_pred CcceeccccHHHHHHhhcc----CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 151 KGLVGVECSIEEIESLLCI----GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
...+|.+.-+++|.+++.. +...-+++.++|++|+|||++|+++++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578998888888876642 222335789999999999999999999876554
No 207
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.63 E-value=0.046 Score=55.95 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=93.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCC----HHHHHHH-
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRN----IESQLNR- 246 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~----~~~l~~~- 246 (869)
++-+++.++|.-|.|||++++++.....+.=-..+.+. ........+...+..++.. ++..+ .+.+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDREL 122 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHHH
Confidence 55678999999999999999966654432211122221 2334556677777777765 22222 2222222
Q ss_pred ----HccCc-eEEEecCCC------------------CCc---EEEEEeCch-------hhhhhc-CCCeE-EEeCCCCH
Q 040255 247 ----LARKK-VRIVFDDVT------------------SGS---RVIITTRDK-------QVLKNC-WANKK-YRMKELVY 291 (869)
Q Consensus 247 ----L~~kr-~LlVLDDv~------------------~gs---rIivTTR~~-------~v~~~~-~~~~~-~~l~~L~~ 291 (869)
-+++| +.++.||.. .++ +|+..-.-+ .+.... ....+ |++.+++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 25677 999999997 222 122221111 011111 11234 99999999
Q ss_pred HHHHHHHHHhhcCCCCCCcc-HHHHHHHHHHHcCCCchhHHHHHh
Q 040255 292 ADAHKLFCQWAFGGDHLDAS-HIELTDKAIKYAQGVPLALKVLGC 335 (869)
Q Consensus 292 ~ea~~Lf~~~af~~~~~~~~-~~~~~~~i~~~~~GlPLal~~~g~ 335 (869)
++...++..+.-+...+.+- -.+....|.....|.|.++..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99888877765443322222 235667788899999999987653
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.63 E-value=0.0013 Score=71.43 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=41.7
Q ss_pred CCcceeccccHHHHHHhhccC----CCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 150 NKGLVGVECSIEEIESLLCIG----SEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++++|+++.++++.+++... ....++++++|++|.||||||+++.+.+.
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 347999999999999988642 23468899999999999999999998653
No 209
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.0019 Score=63.30 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=75.3
Q ss_pred CCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc-----ccc
Q 040255 510 AEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE-----LEN 582 (869)
Q Consensus 510 ~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-----l~~ 582 (869)
.+...+++++|.+..+ +-.++.|..|.+.+|+|+.+.+++.. -+++|..|.|.+|+ +..+-+. ++.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~------~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT------FLPNLKTLILTNNS-IQELGDLDPLASCPK 114 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhh------hccccceEEecCcc-hhhhhhcchhccCCc
Confidence 5677788888887777 66788999999999999877665543 24578999999987 5555443 788
Q ss_pred cchhcccccccccCCC----CcCCccccceeccccc
Q 040255 583 LEYLTVKGTTIRELPE----SLGRLSWVKRLILSNN 614 (869)
Q Consensus 583 L~~L~L~~n~i~~lP~----~i~~l~~L~~L~Ls~n 614 (869)
|++|.+-+|.++.-+. -+..+++|++||.++-
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9999999998875543 4667899999998764
No 210
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.60 E-value=0.012 Score=62.14 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=86.4
Q ss_pred cCCcceeccccHHHHHHhhccC--CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhh--ccCCHHHHH
Q 040255 149 KNKGLVGVECSIEEIESLLCIG--SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAE--ETGGIKDLQ 224 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s--~~~~~~~l~ 224 (869)
+...++|-..+-.++..++... .++...|.|+|+.|.|||+|......+ .+.|.-...+.-....- ++-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4456899999988888888532 244556889999999999998766654 22333232332222111 111233344
Q ss_pred HHHHHHhhcCC-----CCCCHHHHHHHHcc------CceEEEecCCC-----------------------CCcEEEEEeC
Q 040255 225 KKLLSELSKDG-----NMRNIESQLNRLAR------KKVRIVFDDVT-----------------------SGSRVIITTR 270 (869)
Q Consensus 225 ~~il~~l~~~~-----~~~~~~~l~~~L~~------kr~LlVLDDv~-----------------------~gsrIivTTR 270 (869)
.++..++.... ...+.+.+...|+. -++..|+|.++ |=+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 44443333111 11125566666643 36899999998 5566778998
Q ss_pred chh-------hhhhcCCCeEEEeCCCCHHHHHHHHHHh
Q 040255 271 DKQ-------VLKNCWANKKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 271 ~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 301 (869)
-.. |-....-..++-++.++-++-..+++.-
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 542 2222222235556666666666665543
No 211
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.014 Score=58.81 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=41.7
Q ss_pred cCCcceeccccHHHHHHhhcc--CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCc
Q 040255 149 KNKGLVGVECSIEEIESLLCI--GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEG 204 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 204 (869)
....++|.|...+.|.+--.. ..-...-|.+||--|+||+.|++++.+.+....-.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 346789999988888653211 11234457899999999999999999998877655
No 212
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.57 E-value=0.02 Score=60.74 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
-|.|.|++|+|||+||+++++.....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 46689999999999999999865433
No 213
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.56 E-value=0.012 Score=59.67 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=86.0
Q ss_pred CCcceeccccHHH---HHHhhcc----CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHH
Q 040255 150 NKGLVGVECSIEE---IESLLCI----GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 222 (869)
Q Consensus 150 ~~~~vGr~~~~~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~ 222 (869)
.+++||-+....+ |++.|.. +....+-|..+|++|.|||.+|++++++.+--| +. +. ...
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-vk-------at~ 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-VK-------ATE 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-ec-------hHH
Confidence 3568887766543 4555543 234567899999999999999999999765332 21 00 001
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC--------------------------------CCcEEEEEeC
Q 040255 223 LQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT--------------------------------SGSRVIITTR 270 (869)
Q Consensus 223 l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~--------------------------------~gsrIivTTR 270 (869)
|. ...++ +....-.+...+.-+.-++.+.+|.++ .|-..|-.|-
T Consensus 187 li---GehVG-dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 187 LI---GEHVG-DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred HH---HHHhh-hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 11 11111 000000111111123456777777776 4555566666
Q ss_pred chhhhhhc---CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCC
Q 040255 271 DKQVLKNC---WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGV 326 (869)
Q Consensus 271 ~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 326 (869)
...++... ...+-++....+++|-.+++..++-.-.-|.. .-.+.++++.+|+
T Consensus 263 ~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 263 RPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred ChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 65554332 23356788888999999999888732222211 1134555566554
No 214
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.55 E-value=0.0096 Score=64.40 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=44.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVR 253 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~L 253 (869)
.+-+.|+|..|+|||.||.++++.+..+=..+.|+. . ..+...+....... ......+.+. +-=|
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----~------~~l~~~lk~~~~~~----~~~~~l~~l~-~~dl 220 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----F------PEFIRELKNSISDG----SVKEKIDAVK-EAPV 220 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----H------HHHHHHHHHHHhcC----cHHHHHHHhc-CCCE
Confidence 356889999999999999999998765433455654 1 23334443333211 1222233333 4458
Q ss_pred EEecCCC
Q 040255 254 IVFDDVT 260 (869)
Q Consensus 254 lVLDDv~ 260 (869)
|||||+.
T Consensus 221 LiIDDiG 227 (306)
T PRK08939 221 LMLDDIG 227 (306)
T ss_pred EEEecCC
Confidence 9999996
No 215
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.011 Score=61.80 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=28.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh----cCccCceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI----SRHFEGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~~ 209 (869)
-|+|.++|++|.|||+|.+++++++ .+.|....-+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 5889999999999999999999953 45566555554
No 216
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=96.53 E-value=0.00082 Score=63.10 Aligned_cols=75 Identities=19% Similarity=0.408 Sum_probs=36.8
Q ss_pred CcEEEccccccccCchhHHHHHHHccC-------Cce----------EEecC-CccCCCcchHHHHHHhhhhceeeeeec
Q 040255 2 YDVFLSFRGEDTRDNFTSHLHHVLSLK-------SIK----------TFIDD-QLIRGDNISQSLLGTIEASCIAIIIFS 63 (869)
Q Consensus 2 ~dvF~sf~g~d~r~~f~~~l~~~L~~~-------gi~----------~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S 63 (869)
|.|||||+.+|-. .....|...+... .+. .+.+. +....+.|...|.++|..|.+.||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6899999999832 2566666666552 221 12222 334456889999999999999999999
Q ss_pred cccccccceEeeec
Q 040255 64 ERYASSRWFFYRVD 77 (869)
Q Consensus 64 ~~ya~s~wvfy~vd 77 (869)
++=+.|+||-|+++
T Consensus 80 ~~T~~s~wV~~EI~ 93 (130)
T PF08937_consen 80 PNTAKSKWVNWEIE 93 (130)
T ss_dssp TT----HHHHHHHH
T ss_pred CCcccCcHHHHHHH
Confidence 98888999666655
No 217
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.52 E-value=0.019 Score=64.99 Aligned_cols=46 Identities=24% Similarity=0.145 Sum_probs=37.5
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++||++.++.+...+..+ .-|.|.|++|+|||+||+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 35999999999888777543 34789999999999999999986543
No 218
>PHA00729 NTP-binding motif containing protein
Probab=96.51 E-value=0.01 Score=60.43 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=23.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+...|.|.|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999999999764
No 219
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.50 E-value=0.021 Score=70.63 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=38.8
Q ss_pred CcceeccccHHHHHHhhccC-------CCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 151 KGLVGVECSIEEIESLLCIG-------SEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++|-+..++.|...+... .....++.++|+.|+|||+||+++++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 56889999988888776531 122357889999999999999999986643
No 220
>PRK10536 hypothetical protein; Provisional
Probab=96.45 E-value=0.03 Score=58.18 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=38.9
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh-h-cCccCceE
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK-I-SRHFEGSY 206 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~ 206 (869)
..+.++......+...+.. ..+|.+.|.+|.|||+||.++..+ + ...|+..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 4567788888888877753 248999999999999999998873 4 44455433
No 221
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.0016 Score=66.54 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=42.0
Q ss_pred CCCccEEEecCCCCCcccCcc--ccccchhccccc--ccc-cCCCCcCCccccceecccccccccccCcc---ccCCCCC
Q 040255 559 FKTPITFEIIDCKMLERLPDE--LENLEYLTVKGT--TIR-ELPESLGRLSWVKRLILSNNSNLERIPES---IRHLSKL 630 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n--~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~---i~~L~~L 630 (869)
+..|+.|++.++. +.++-.. |++|++|.++.| .+. .++....++++|++|+|++| .+.. +++ +..+.+|
T Consensus 42 ~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcch
Confidence 3344555555544 3333222 666777777777 444 55555555677777777777 4443 222 3444455
Q ss_pred CEEecCCCC
Q 040255 631 TFLFISHCE 639 (869)
Q Consensus 631 ~~L~L~~c~ 639 (869)
..|++.+|.
T Consensus 119 ~~Ldl~n~~ 127 (260)
T KOG2739|consen 119 KSLDLFNCS 127 (260)
T ss_pred hhhhcccCC
Confidence 555555554
No 222
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.42 E-value=0.016 Score=60.62 Aligned_cols=173 Identities=17% Similarity=0.161 Sum_probs=100.1
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC--ccCceEEEEeehhhhccCCHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR--HFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
|...++++|-+..++-|.+.+.. ...+....+|++|.|||+-|++++..+.. .|.+++-=.| +|...++.-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchh
Confidence 44457799999989888887764 56778889999999999999999986533 4655543222 22222322111
Q ss_pred HHH--HHHhhcCCCCCCHHHHHHHHccCc-eEEEecCCC------------------CCcEE-EEEeCchhhhhh-cCCC
Q 040255 225 KKL--LSELSKDGNMRNIESQLNRLARKK-VRIVFDDVT------------------SGSRV-IITTRDKQVLKN-CWAN 281 (869)
Q Consensus 225 ~~i--l~~l~~~~~~~~~~~l~~~L~~kr-~LlVLDDv~------------------~gsrI-ivTTR~~~v~~~-~~~~ 281 (869)
.++ +.++....... ... ..++ -.+|||+++ ...|. +||+--..+..- ....
T Consensus 107 ~Kik~fakl~~~~~~~-----~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 107 EKIKNFAKLTVLLKRS-----DGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred hhhcCHHHHhhccccc-----cCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 111 11111000000 000 0122 367888887 23343 455433322211 1223
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHH
Q 040255 282 KKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGV-PLALKV 332 (869)
Q Consensus 282 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~ 332 (869)
..|..++|..++...-+...|-..+-. -..+..+.|++.++|- --|+..
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 568899999999998888887543322 2246678899999884 334433
No 223
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.40 E-value=0.052 Score=61.15 Aligned_cols=146 Identities=17% Similarity=0.167 Sum_probs=80.7
Q ss_pred cHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCC
Q 040255 159 SIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMR 238 (869)
Q Consensus 159 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~ 238 (869)
-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+++...........+.+....+
T Consensus 25 ~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~----------- 87 (398)
T COG1373 25 LLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY----------- 87 (398)
T ss_pred hhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHH-----------
Confidence 344444444322 2289999999999999997776655444 45554221111111111111111
Q ss_pred CHHHHHHHHccCceEEEecCCC--------------CCc-EEEEEeCchhhhhh------cCCCeEEEeCCCCHHHHHHH
Q 040255 239 NIESQLNRLARKKVRIVFDDVT--------------SGS-RVIITTRDKQVLKN------CWANKKYRMKELVYADAHKL 297 (869)
Q Consensus 239 ~~~~l~~~L~~kr~LlVLDDv~--------------~gs-rIivTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~L 297 (869)
...-..++.+|+||.|. .|- +|++|+-+...... .|....+++-||+..|-..+
T Consensus 88 -----~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 88 -----IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred -----HHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 11111178899999997 222 68888876655332 24456889999999998765
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 298 FCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 298 f~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
-...+ ... .. +..-+-.-..||.|-++..
T Consensus 163 ~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 163 KGEEI----EPS-KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred ccccc----chh-HH-HHHHHHHHHhCCCcHHHhC
Confidence 43000 000 11 1122223456788877654
No 224
>PRK06696 uridine kinase; Validated
Probab=96.36 E-value=0.0036 Score=64.75 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=35.1
Q ss_pred ccccHHHHHHhhcc-CCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 156 VECSIEEIESLLCI-GSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 156 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
|++.+++|.+.+.. ..+...+|+|.|.+|.||||||+.+.+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44556666665543 34567899999999999999999999977543
No 225
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.01 Score=68.33 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=43.5
Q ss_pred CcceeccccHHHHHHhhcc----CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 151 KGLVGVECSIEEIESLLCI----GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
++-+|++.-.++|.+.+.. ++.+-++++.+|++|+|||.+|+.++..+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 4569999999999998864 334557999999999999999999999877665
No 226
>PRK07667 uridine kinase; Provisional
Probab=96.34 E-value=0.0069 Score=61.12 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=33.4
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 160 IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 160 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
+++|...+........+|||.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455666666555666899999999999999999999976543
No 227
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0038 Score=59.03 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=29.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCc-cCceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRH-FEGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 209 (869)
..-|+|.||+|+||||+++.+.+.++.. |...-|++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 3468999999999999999999988765 76555543
No 228
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.018 Score=66.12 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=38.1
Q ss_pred cceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccC
Q 040255 152 GLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFE 203 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 203 (869)
++=|.++-..+|.+...- +-...+=|..+|++|.|||++|+++++.-...|-
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 344577777777654421 2255677889999999999999999998776664
No 229
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.11 Score=56.41 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=53.3
Q ss_pred cCceEEEecCCC------------------CCcEEEEEeCc-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC
Q 040255 249 RKKVRIVFDDVT------------------SGSRVIITTRD-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHL 308 (869)
Q Consensus 249 ~kr~LlVLDDv~------------------~gsrIivTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 308 (869)
+++-++|+|+++ +++.+|++|.+ ..++.. ......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 456689999998 46667776665 334332 2345688999999999988886531 1
Q ss_pred CccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 309 DASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 309 ~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
+ ...+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2336678999999998665443
No 230
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.082 Score=62.66 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=92.2
Q ss_pred CCcceeccccHHHHHH---hhcc-------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehh-hhccC
Q 040255 150 NKGLVGVECSIEEIES---LLCI-------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVRE-AEETG 218 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~---~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~-~s~~~ 218 (869)
..++.|.++..++|++ .|.. +..-.+=|.++|++|.|||-||++++-+- .+-|+..... .-..+
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSEFVEMF 384 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechHHHHHHh
Confidence 3678898877666655 4433 22234557899999999999999999863 2344442111 00000
Q ss_pred -CH-HHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------------------------CCc
Q 040255 219 -GI-KDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------------------------SGS 263 (869)
Q Consensus 219 -~~-~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------------------------~gs 263 (869)
+. ....+.++.... ...+..+.+|+++ .+.
T Consensus 385 ~g~~asrvr~lf~~ar---------------~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLAR---------------KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred cccchHHHHHHHHHhh---------------ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 00 111222222211 2334455555554 222
Q ss_pred --EEEEEeCchhhhhhc-----CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 040255 264 --RVIITTRDKQVLKNC-----WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 264 --rIivTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 330 (869)
-+|-+|...+++... ..+..+.+...+..+..++|.-|+-..... .+..++++ ++...-|++=|-
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 234466655554322 245678899999999999999988544332 45566676 888888888553
No 231
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.00017 Score=74.11 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=74.8
Q ss_pred ccchhcccccccc-cCCCCcCCccccceecccccccccccCcc--ccCCCCCCEEecCCCCCCcccCC-----CCcccce
Q 040255 582 NLEYLTVKGTTIR-ELPESLGRLSWVKRLILSNNSNLERIPES--IRHLSKLTFLFISHCERLQTLPE-----LPCNLGL 653 (869)
Q Consensus 582 ~L~~L~L~~n~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~--i~~L~~L~~L~L~~c~~l~~lp~-----~~~~L~~ 653 (869)
.|+.|.|.++.+. .+-..|..-.+|+.|+|+.|+.+++.-.. +.+++.|..|+|+.|-..+..-. .-++|+.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 4555555555554 34445556677888888887666654332 57778888888888766554322 1357778
Q ss_pred eecccCCC-Cc--cccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCceee
Q 040255 654 LSARNCTS-LE--KLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSM 714 (869)
Q Consensus 654 L~l~~c~~-l~--~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 714 (869)
|++++|.. +. .+..--..+++|..|||+.+....+..+. .+.+...++++.++.++
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~-----~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-----EFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH-----HHHhcchheeeehhhhc
Confidence 88887743 11 11112245677888888876655443222 23445566666555444
No 232
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.19 E-value=0.021 Score=59.15 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=36.9
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..|-++|..+=..-.++.|+|.+|.|||++|.+++......-..++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455555433344578999999999999999999887655556788887
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.014 Score=61.43 Aligned_cols=74 Identities=26% Similarity=0.260 Sum_probs=44.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCce
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKV 252 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~ 252 (869)
...-+.++|.+|+|||.||.++.+++...=-.+.|+. +.++..++....... .....+.+.++ +-=
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~~---~~~~~l~~~l~-~~d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDEG---RLEEKLLRELK-KVD 169 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcC---chHHHHHHHhh-cCC
Confidence 4456889999999999999999998873323444554 233444443333220 00222333222 223
Q ss_pred EEEecCCC
Q 040255 253 RIVFDDVT 260 (869)
Q Consensus 253 LlVLDDv~ 260 (869)
||||||+.
T Consensus 170 lLIiDDlG 177 (254)
T COG1484 170 LLIIDDIG 177 (254)
T ss_pred EEEEeccc
Confidence 89999996
No 234
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.032 Score=61.19 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=37.1
Q ss_pred cceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 152 GLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.++|-+....++..+..........+.++|++|+||||+|.++++.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 3567777777777777643333345899999999999999999997653
No 235
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.09 E-value=0.2 Score=54.97 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=35.3
Q ss_pred ccHHHHHHhhccCC-CCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 158 CSIEEIESLLCIGS-EGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 158 ~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.-.+.|.+.+...+ .+..+|||.|.=|+||||+.+.+.+++...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 33456667776543 678899999999999999999999987766
No 236
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.09 E-value=0.0056 Score=59.02 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=55.2
Q ss_pred cEEEcccccccc-CchhHHHHHHHccC-CceEEecC-CccC--CCcchHHHHHHhhhhceeeeeecccc
Q 040255 3 DVFLSFRGEDTR-DNFTSHLHHVLSLK-SIKTFIDD-QLIR--GDNISQSLLGTIEASCIAIIIFSERY 66 (869)
Q Consensus 3 dvF~sf~g~d~r-~~f~~~l~~~L~~~-gi~~f~d~-~~~~--g~~i~~~l~~ai~~s~~~ivv~S~~y 66 (869)
-|||||+.+.-- .++|-.|++.|++. |+.|.+|- +... +..+...+.++|+++...|+|+|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 499999986533 47899999999999 99999998 6644 77888999999999999999999764
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.023 Score=67.62 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=65.1
Q ss_pred CcceeccccHHHHHHhhcc-------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHH
Q 040255 151 KGLVGVECSIEEIESLLCI-------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 223 (869)
..++|-+..++.+.+.+.. .+....+....|+.|+|||-||++++..+.+.=+..+-+ +.++....+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkH----- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKH----- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHH-----
Confidence 5689999999888877643 123456777899999999999999999764322222222 333332222
Q ss_pred HHHHHHHhhcCCCCC----CHHHHHHHHccCce-EEEecCCC
Q 040255 224 QKKLLSELSKDGNMR----NIESQLNRLARKKV-RIVFDDVT 260 (869)
Q Consensus 224 ~~~il~~l~~~~~~~----~~~~l~~~L~~kr~-LlVLDDv~ 260 (869)
-.+.+-+.++.. .-..+.+..+.++| +|.||+|+
T Consensus 565 ---sVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIE 603 (786)
T COG0542 565 ---SVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIE 603 (786)
T ss_pred ---HHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhh
Confidence 233333433332 14567778888888 88899997
No 238
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.02 E-value=0.0042 Score=63.51 Aligned_cols=99 Identities=27% Similarity=0.309 Sum_probs=67.5
Q ss_pred cccccchhcccccccccCCCCcCCccccceeccccc--ccccccCccccCCCCCCEEecCCCCC--CcccCCC--Ccccc
Q 040255 579 ELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNN--SNLERIPESIRHLSKLTFLFISHCER--LQTLPEL--PCNLG 652 (869)
Q Consensus 579 ~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n--~~l~~lP~~i~~L~~L~~L~L~~c~~--l~~lp~~--~~~L~ 652 (869)
.+..|+.|++.+..++.+- .+-.|++|+.|.+|.| .-...++.....+++|++|+|++|+. +.++++. +.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3677888888777666432 2335889999999999 55566766677789999999999653 3455544 56788
Q ss_pred eeecccCCCCccccC----CCCCCccceEEe
Q 040255 653 LLSARNCTSLEKLPA----GLSSMSSVLYVN 679 (869)
Q Consensus 653 ~L~l~~c~~l~~lp~----~~~~l~~L~~l~ 679 (869)
.|++.+|.... +-. .+.-+++|++||
T Consensus 120 ~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTN-LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence 88888886544 221 223346666666
No 239
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.02 E-value=0.0031 Score=75.50 Aligned_cols=108 Identities=22% Similarity=0.240 Sum_probs=71.3
Q ss_pred ccccCCcceEEEEcCCC--CccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCc
Q 040255 480 AFSKMPKLRFLRFYGDK--NKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSS 555 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~--~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~ 555 (869)
.-.-+|+|+.|.+.+-. ...+..-...+ ++|+.|++++.+++.+ ...+++|+.|.|.+-.++.-. .+ ..
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sF--pNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~----~l-~~ 215 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLCASF--PNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQ----DL-ID 215 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHhhcc--CccceeecCCCCccCcHHHhccccHHHHhccCCCCCchh----hH-HH
Confidence 34568999999997611 11112222233 5999999999999888 778889999988877766311 11 14
Q ss_pred cCCCCCccEEEecCCCCCccc--Cc-------cccccchhcccccccc
Q 040255 556 LCTFKTPITFEIIDCKMLERL--PD-------ELENLEYLTVKGTTIR 594 (869)
Q Consensus 556 ~~~l~~L~~L~L~~~~~l~~l--p~-------~l~~L~~L~L~~n~i~ 594 (869)
+.+|++|++||+|.-+....- .. .+++|+.||.|+|.+.
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 678999999999887643221 11 1677777777777654
No 240
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.02 E-value=0.24 Score=53.75 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=50.8
Q ss_pred cCceEEEecCCC------------------CCcEEEEEeCc-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC
Q 040255 249 RKKVRIVFDDVT------------------SGSRVIITTRD-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHL 308 (869)
Q Consensus 249 ~kr~LlVLDDv~------------------~gsrIivTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 308 (869)
+.+-++|+|+++ ++..+|.+|.+ ..++.. ......+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 345588889998 45555665554 444433 2345789999999999998886532 1
Q ss_pred CccHHHHHHHHHHHcCCCchhHHHH
Q 040255 309 DASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 309 ~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
. ....++..++|.|+....+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356789999999876554
No 241
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.22 Score=50.49 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=33.6
Q ss_pred cce-eccccHHHHHHhhccCC-----------CCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 152 GLV-GVECSIEEIESLLCIGS-----------EGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 152 ~~v-Gr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.+| |.+..+++|.+.+...- ....=|.++|++|.|||-||++|++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 355 45777777776654321 33455789999999999999999974
No 242
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.00 E-value=0.084 Score=62.30 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=40.5
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
....++|....++++.+.+..-...-..|.|+|..|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999988776543444567899999999999999999853
No 243
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.98 E-value=0.021 Score=57.82 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=55.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCC-HHHHHHHHccCceE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRN-IESQLNRLARKKVR 253 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~-~~~l~~~L~~kr~L 253 (869)
..|.|+|+.|.||||++.++...+.......++...- .. ...... ...+..+......... .+.++..|+..+=.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~--E~~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PI--EFVHES-KRSLINQREVGLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-Cc--cccccC-ccceeeecccCCCccCHHHHHHHHhcCCcCE
Confidence 4689999999999999999988776555544443210 00 000000 0011111000000112 56677778877889
Q ss_pred EEecCCC-------------CCcEEEEEeCchhhh
Q 040255 254 IVFDDVT-------------SGSRVIITTRDKQVL 275 (869)
Q Consensus 254 lVLDDv~-------------~gsrIivTTR~~~v~ 275 (869)
+++|++. .|..++.|+-..++.
T Consensus 78 ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 78 ILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHH
Confidence 9999995 455566666555443
No 244
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.11 Score=57.09 Aligned_cols=133 Identities=13% Similarity=0.090 Sum_probs=73.6
Q ss_pred cee-ccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc---------------------cCceEEEEe
Q 040255 153 LVG-VECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH---------------------FEGSYFALN 210 (869)
Q Consensus 153 ~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~~~~~ 210 (869)
++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+.+.+-.. ++...++.-
T Consensus 7 i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 566 455566677766532 234567899999999999999998865321 111111110
Q ss_pred ehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCch
Q 040255 211 VREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDK 272 (869)
Q Consensus 211 ~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~ 272 (869)
......+..+.. +...+... -..+.+-++|+|+++ +++.+|++|.+.
T Consensus 86 ---~~~~i~id~ir~-l~~~~~~~-----------~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 86 ---DGQSIKKDQIRY-LKEEFSKS-----------GVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred ---ccccCCHHHHHH-HHHHHhhC-----------CcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 000111111111 11111000 012445578889987 456667677653
Q ss_pred -hhhhh-cCCCeEEEeCCCCHHHHHHHHHHh
Q 040255 273 -QVLKN-CWANKKYRMKELVYADAHKLFCQW 301 (869)
Q Consensus 273 -~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 301 (869)
.+... -.....+++.+++.++..+.+...
T Consensus 151 ~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 151 HQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 33322 234568999999999998888653
No 245
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.93 E-value=0.034 Score=58.00 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc------cCceEEEE
Q 040255 163 IESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH------FEGSYFAL 209 (869)
Q Consensus 163 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 209 (869)
|-++|..+=..-.++.|+|.+|.||||||.+++-..... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 444454333445789999999999999999987543222 25788887
No 246
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.92 E-value=0.12 Score=50.59 Aligned_cols=43 Identities=30% Similarity=0.264 Sum_probs=29.9
Q ss_pred eccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 155 GVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 155 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
|-++.++.|.+.+..+ .-...+.++|..|+||+|+|.++++.+
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 3345566666666533 223467899999999999999999854
No 247
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.89 E-value=0.14 Score=58.15 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...+|.++|.+|+||||.|..++..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999876644
No 248
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.85 E-value=0.049 Score=56.41 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=35.4
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc------CceEEEE
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF------EGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~ 209 (869)
..|.++|..+-..-.++.|+|.+|+|||+||.+++......- ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 344555543334457899999999999999999887654444 5677876
No 249
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00075 Score=68.88 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=62.0
Q ss_pred CCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCcc--ccCCCCCCEEe
Q 040255 559 FKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPES--IRHLSKLTFLF 634 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~--i~~L~~L~~L~ 634 (869)
+.+.+.|+..||. +..+.-. |+.|+.|.|+-|.|+.+- .+..+++|+.|.|..| .+..|-+- +.+|++|+.|.
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 4455667777776 5554433 777788888888777763 3667778888888877 66666532 56777788888
Q ss_pred cCCCCCCcccCCC--------Ccccceee
Q 040255 635 ISHCERLQTLPEL--------PCNLGLLS 655 (869)
Q Consensus 635 L~~c~~l~~lp~~--------~~~L~~L~ 655 (869)
|..|.-.+.-+.. +++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776655544432 56666664
No 250
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.84 E-value=0.025 Score=70.27 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=39.5
Q ss_pred CcceeccccHHHHHHhhccCC-------CCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 151 KGLVGVECSIEEIESLLCIGS-------EGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++|.+..++.+...+.... ....++.++|+.|+|||++|+.+...+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 468999999999988775421 12457889999999999999999997644
No 251
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.82 E-value=0.032 Score=56.99 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=31.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..-+++.|+|.+|.|||++|.+++.....+-..++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44578999999999999999998887655567788887
No 252
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.042 Score=62.35 Aligned_cols=112 Identities=20% Similarity=0.196 Sum_probs=67.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRI 254 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~Ll 254 (869)
.=|.+||++|.|||-||++|+|+-..+| +. ++ +. +|+.....+ ....-.+...+.-..-+++|
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VK------GP-ELlNkYVGE----SErAVR~vFqRAR~saPCVI 608 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VK------GP-ELLNKYVGE----SERAVRQVFQRARASAPCVI 608 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ec------CH-HHHHHHhhh----HHHHHHHHHHHhhcCCCeEE
Confidence 3477999999999999999999877665 32 11 11 122111111 00000111112223467888
Q ss_pred EecCCC-------------------------------CCcEEEEEeCchhhhhh-----cCCCeEEEeCCCCHHHHHHHH
Q 040255 255 VFDDVT-------------------------------SGSRVIITTRDKQVLKN-----CWANKKYRMKELVYADAHKLF 298 (869)
Q Consensus 255 VLDDv~-------------------------------~gsrIivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf 298 (869)
.+|.++ .|--||-.|-..++... -..+...-|+..+.+|-.+++
T Consensus 609 FFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~IL 688 (802)
T KOG0733|consen 609 FFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAIL 688 (802)
T ss_pred EecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHH
Confidence 888887 45556666655544321 124567888999999999999
Q ss_pred HHhhc
Q 040255 299 CQWAF 303 (869)
Q Consensus 299 ~~~af 303 (869)
+...-
T Consensus 689 K~~tk 693 (802)
T KOG0733|consen 689 KTITK 693 (802)
T ss_pred HHHhc
Confidence 88774
No 253
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.80 E-value=0.0076 Score=68.92 Aligned_cols=50 Identities=26% Similarity=0.209 Sum_probs=41.4
Q ss_pred CcceeccccHHHHHHhhc----cCCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 151 KGLVGVECSIEEIESLLC----IGSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.+++|+++.+++|.+.|. .....-+++.++|++|+||||||+.+.+-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 468999999999999882 23355689999999999999999999985543
No 254
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.78 E-value=0.036 Score=58.95 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=27.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+.++|.++|++|+||||++..++..+...-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4468999999999999999999988665442334444
No 255
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.76 E-value=0.0078 Score=55.97 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHhh
Q 040255 177 LRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~ 198 (869)
|+|.|++|+||||||+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 256
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.74 E-value=0.0086 Score=60.49 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.4
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
||||.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999977643
No 257
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.74 E-value=0.079 Score=62.10 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=37.4
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
..++++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++.
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999998776532 2345679999999999999999874
No 258
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.72 E-value=0.011 Score=58.63 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=31.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..+|.|.|+.|.||||+|+.+++++...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999887777777764
No 259
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.70 E-value=0.024 Score=65.66 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=48.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH--cc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRL--AR 249 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L--~~ 249 (869)
.+-+++.++|++|+||||||..++++-. |. ++=+. .|.......+-+.|...+... ..+ .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~----------s~l~ads 386 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNH----------SVLDADS 386 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhc----------cccccCC
Confidence 4568999999999999999999998643 21 11222 355555566666665544321 122 26
Q ss_pred CceEEEecCCC
Q 040255 250 KKVRIVFDDVT 260 (869)
Q Consensus 250 kr~LlVLDDv~ 260 (869)
++.-||+|.++
T Consensus 387 rP~CLViDEID 397 (877)
T KOG1969|consen 387 RPVCLVIDEID 397 (877)
T ss_pred CcceEEEeccc
Confidence 88899999998
No 260
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.69 E-value=0.039 Score=66.90 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=38.8
Q ss_pred CcceeccccHHHHHHhhccC-------CCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 151 KGLVGVECSIEEIESLLCIG-------SEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..++|-+..++.|.+.+... ......+.++|++|+|||++|++++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999998888877521 12345788999999999999999998774
No 261
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.67 E-value=0.31 Score=53.10 Aligned_cols=75 Identities=9% Similarity=0.054 Sum_probs=50.6
Q ss_pred cCceEEEecCCC------------------CCcEEEEEeCch-hhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC
Q 040255 249 RKKVRIVFDDVT------------------SGSRVIITTRDK-QVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHL 308 (869)
Q Consensus 249 ~kr~LlVLDDv~------------------~gsrIivTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 308 (869)
+++-++|+|+++ ++..+|++|.+. .++.. ......+.+.+++.+++.+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~--~-- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS--A-- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--c--
Confidence 456678899998 455666666554 44433 23457899999999999988877541 1
Q ss_pred CccHHHHHHHHHHHcCCCchhH
Q 040255 309 DASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 309 ~~~~~~~~~~i~~~~~GlPLal 330 (869)
+ ...+..++..++|.|+..
T Consensus 182 -~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred -C--hHHHHHHHHHcCCCHHHH
Confidence 1 123567788999999643
No 262
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.093 Score=58.50 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=22.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..++.++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 263
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.63 E-value=0.78 Score=50.39 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=49.2
Q ss_pred cCceEEEecCCC------------------CCcEEEEEeCc-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC
Q 040255 249 RKKVRIVFDDVT------------------SGSRVIITTRD-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHL 308 (869)
Q Consensus 249 ~kr~LlVLDDv~------------------~gsrIivTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 308 (869)
+++-++|+|+++ ++..+|.+|.+ ..++.. ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 345588899998 55555555544 545433 2345789999999999998887642 1
Q ss_pred CccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 309 DASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 309 ~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
.+ ...++..++|.|+....+.
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899997554443
No 264
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.23 Score=59.43 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=39.6
Q ss_pred CCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 150 NKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.+.++||+.+++++.+.|.....+-++ ++|.+|+|||++|.-++.++..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~ 217 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVN 217 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhc
Confidence 456899999999999999865443333 5799999999999999987644
No 265
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.60 E-value=0.039 Score=56.86 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..|-.+|..+=..-.++.|.|.+|+||||+|.+++.....+=..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455556433344578999999999999999999987655444566775
No 266
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.60 E-value=0.17 Score=57.30 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357899999999999999998888754
No 267
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.57 E-value=0.21 Score=57.95 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=106.3
Q ss_pred cCCcceeccccHHHHHHhhcc--CC-CCeEEEEEEecCCchHHHHHHHHHHhhc---C-----ccCceEEEEeehhhhcc
Q 040255 149 KNKGLVGVECSIEEIESLLCI--GS-EGVCKLRIWGIGGISKITIAGAVFNKIS---R-----HFEGSYFALNVREAEET 217 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~-----~F~~~~~~~~~~~~s~~ 217 (869)
.+..+-+|+.+..+|...+.. .. +.-..+=|.|.+|.|||..+..|.+.+. . .|+. +.+...+ -
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~----l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLR----L 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEccee----e
Confidence 566788999999999988853 22 3334788999999999999999998443 1 2432 2333221 2
Q ss_pred CCHHHHHHHHHHHhhcCCCCC--CHHHHHHHHc-----cCceEEEecCCC-------------------CCcEEEEEeCc
Q 040255 218 GGIKDLQKKLLSELSKDGNMR--NIESQLNRLA-----RKKVRIVFDDVT-------------------SGSRVIITTRD 271 (869)
Q Consensus 218 ~~~~~l~~~il~~l~~~~~~~--~~~~l~~~L~-----~kr~LlVLDDv~-------------------~gsrIivTTR~ 271 (869)
.....+...|...+.+..... ..+.+..+.. .+..++++|+++ ++||++|-+=.
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 356788888888888665544 3666766664 457899999997 78887665422
Q ss_pred hh-----------hhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 272 KQ-----------VLKNCWANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 272 ~~-----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
.. +....| -..+...+.++++-.+....+.-+-.. .....+-+++.|+.-.|..-.|+.+.
T Consensus 549 NTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 11 111111 123455566666655555444322111 11222334444444444444444443
No 268
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.12 Score=52.36 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=38.0
Q ss_pred cceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 152 GLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
++=|.+-..+++.+.... +-+..+=|.++|++|.|||.||++|++.-...|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 345778777777765432 225567788999999999999999999765544
No 269
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.56 E-value=0.039 Score=68.33 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=59.0
Q ss_pred CcceeccccHHHHHHhhccC-------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHH
Q 040255 151 KGLVGVECSIEEIESLLCIG-------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 223 (869)
..++|-+..++.|...+... ......+.++|+.|+|||+||+++++.+...-...+-+ +..+......+..+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~l 587 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSKL 587 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHHh
Confidence 56889888888887766421 12244667899999999999999998764332222222 23322222222221
Q ss_pred HHHHHHHhhcCC--CCCC-HHHHHHHHccCc-eEEEecCCC
Q 040255 224 QKKLLSELSKDG--NMRN-IESQLNRLARKK-VRIVFDDVT 260 (869)
Q Consensus 224 ~~~il~~l~~~~--~~~~-~~~l~~~L~~kr-~LlVLDDv~ 260 (869)
++... ...+ ...+.+.++.++ -+++||+++
T Consensus 588 -------~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeie 621 (821)
T CHL00095 588 -------IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIE 621 (821)
T ss_pred -------cCCCCcccCcCccchHHHHHHhCCCeEEEECChh
Confidence 11110 0011 334566666665 488999998
No 270
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.52 E-value=0.13 Score=56.34 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=34.5
Q ss_pred ceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 153 LVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 153 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
++|....++++.+.+..-...-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777766543333455789999999999999999874
No 271
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.49 E-value=0.047 Score=55.05 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=34.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELS 232 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~ 232 (869)
++|.++|+.|+||||.+-.++.+.+.+=..++.++. ...+.+..+-++.+...++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~---D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA---DTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE---STSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecC---CCCCccHHHHHHHHHHHhc
Confidence 689999999999999888888766555334555541 1222344444555666665
No 272
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.47 E-value=0.11 Score=62.27 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=33.7
Q ss_pred cceeccccHHHHHHhhccC----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 152 GLVGVECSIEEIESLLCIG----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
++.|.+...+++.+.+... ..-.+-|.|+|++|.||||+|+.++.+....|
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f 213 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 213 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 4566666655555443210 01123488999999999999999998765543
No 273
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.47 E-value=0.009 Score=54.85 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEecCCchHHHHHHHHHHhhcCccCc
Q 040255 177 LRIWGIGGISKITIAGAVFNKISRHFEG 204 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~~F~~ 204 (869)
|.|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988877754
No 274
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.45 E-value=0.037 Score=68.30 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=39.0
Q ss_pred CcceeccccHHHHHHhhcc-------CCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 151 KGLVGVECSIEEIESLLCI-------GSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++|-+..++.+.+.+.. ......++.++|+.|+|||.||++++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4678999888888877642 1233557889999999999999999987643
No 275
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.04 Score=64.41 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=77.0
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc--
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET-- 217 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-- 217 (869)
....|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-..-.- +....
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk~v 317 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSKWV 317 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhcccc
Confidence 3455666555555443321 123456788999999999999999999665554322111 11111
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-----------------------------CCc--EEE
Q 040255 218 GGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-----------------------------SGS--RVI 266 (869)
Q Consensus 218 ~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-----------------------------~gs--rIi 266 (869)
....+..++++.. ..+..+..|.+|+++ ..+ .+|
T Consensus 318 Gesek~ir~~F~~---------------A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 318 GESEKNIRELFEK---------------ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred chHHHHHHHHHHH---------------HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 0112222222222 223556666666665 222 344
Q ss_pred EEeCchhhhhhc-----CCCeEEEeCCCCHHHHHHHHHHhhcC
Q 040255 267 ITTRDKQVLKNC-----WANKKYRMKELVYADAHKLFCQWAFG 304 (869)
Q Consensus 267 vTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~ 304 (869)
-||-........ ..+..+.++..+.++..+.|..+.-.
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 455444333211 23568899999999999999988753
No 276
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.41 E-value=0.18 Score=54.59 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=35.8
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
|..++.++=..+....+...+.. -+.|.|.|.+|+||||+|+.++.++...|
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 33344455444455556666643 24588999999999999999999776544
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.36 E-value=0.072 Score=59.89 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999988765543
No 278
>PRK10867 signal recognition particle protein; Provisional
Probab=95.36 E-value=0.25 Score=55.86 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...+|.++|.+|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36789999999999999998888866554
No 279
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.039 Score=57.69 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
....++|||++|.|||-+|++|+.++.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 456799999999999999999999887665
No 280
>PRK03839 putative kinase; Provisional
Probab=95.33 E-value=0.013 Score=58.43 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999864
No 281
>PRK14974 cell division protein FtsY; Provisional
Probab=95.31 E-value=0.23 Score=54.40 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
...+|+++|++|+||||++..++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999988888876554
No 282
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.28 E-value=0.02 Score=54.99 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=29.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.+|-|.|.+|.||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57889999999999999999999877766666654
No 283
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.27 E-value=0.3 Score=53.06 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=33.9
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCCC-ccHHHHHHHHHHHcCCCchhH
Q 040255 283 KYRMKELVYADAHKLFCQWAFGGDHLD-ASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 283 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal 330 (869)
.++|++++.+|+..++..++-.+-... ...+...++.....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774433222 233445666666679998644
No 284
>PTZ00301 uridine kinase; Provisional
Probab=95.27 E-value=0.014 Score=59.46 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=25.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775444
No 285
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.27 E-value=0.069 Score=53.86 Aligned_cols=39 Identities=13% Similarity=0.053 Sum_probs=26.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHh-h-cCccCceEEEEee
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNK-I-SRHFEGSYFALNV 211 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~ 211 (869)
+..+|.+.|++|.|||.||.+.+-+ + ...|+..+++...
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3568999999999999999887753 3 4678877777543
No 286
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.26 E-value=0.045 Score=60.07 Aligned_cols=47 Identities=21% Similarity=0.089 Sum_probs=37.9
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
+.++|....+.++.+.+..-...-.-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999998888877653333456889999999999999999863
No 287
>PRK08233 hypothetical protein; Provisional
Probab=95.22 E-value=0.015 Score=57.97 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+|+|.|.+|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 288
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.21 E-value=0.21 Score=48.30 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=55.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhh----cC-------CCCCC----
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELS----KD-------GNMRN---- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~----~~-------~~~~~---- 239 (869)
.+|-|++..|-||||+|...+-+...+=-.+.++.-+... ...+-....+.+ ..+. +. +....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 4678888899999999998888655543344554433321 122333333332 1111 00 00000
Q ss_pred ---HHHHHHHHccC-ceEEEecCCC---------------------CCcEEEEEeCchh
Q 040255 240 ---IESQLNRLARK-KVRIVFDDVT---------------------SGSRVIITTRDKQ 273 (869)
Q Consensus 240 ---~~~l~~~L~~k-r~LlVLDDv~---------------------~gsrIivTTR~~~ 273 (869)
.+..++.+... -=|+|||++. .+..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22333444444 4499999996 5668999999853
No 289
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.20 E-value=0.017 Score=59.16 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 290
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.20 E-value=0.11 Score=49.66 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=25.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|.|..|.|||||++.+...... ..+.+++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 59 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTW 59 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEE
Confidence 57899999999999999999875432 2444444
No 291
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.19 E-value=0.084 Score=58.71 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=36.5
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 160 IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 160 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++..+...-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666433334568999999999999999999987765545667765
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.19 E-value=0.11 Score=54.15 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=63.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEe--ehhhhccCCHHHHHHHHHHHhhcCC-------CCCC-----
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALN--VREAEETGGIKDLQKKLLSELSKDG-------NMRN----- 239 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~--~~~~s~~~~~~~l~~~il~~l~~~~-------~~~~----- 239 (869)
-.++||+|..|.||||+|+.+..-..... +.+++.. +...+ .....+...+++..++... .+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 35799999999999999999998544332 3333321 11111 1223334455555554211 1111
Q ss_pred HHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCchhhhhhc
Q 040255 240 IESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDKQVLKNC 278 (869)
Q Consensus 240 ~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~~v~~~~ 278 (869)
.-.+.+.|.-++-++|.|..- .|-..+.-|-|-.++..+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 334567788899999999874 566677777777776654
No 293
>PRK04296 thymidine kinase; Provisional
Probab=95.18 E-value=0.026 Score=56.74 Aligned_cols=34 Identities=12% Similarity=-0.212 Sum_probs=25.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.++.|+|..|.||||+|..++.+...+-..++++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678899999999999999998775554333333
No 294
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.16 E-value=0.061 Score=65.45 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=38.7
Q ss_pred CCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 150 NKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...++|....+.++.+.+..-...-.-|.|+|..|.|||++|+++++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3469999999988877665433334568899999999999999999853
No 295
>PRK00625 shikimate kinase; Provisional
Probab=95.16 E-value=0.015 Score=57.29 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.|.|+||+|+||||+|+.+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 296
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.28 Score=53.92 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=50.7
Q ss_pred cCceEEEecCCC------------------CCcEEEEEeCc-hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC
Q 040255 249 RKKVRIVFDDVT------------------SGSRVIITTRD-KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHL 308 (869)
Q Consensus 249 ~kr~LlVLDDv~------------------~gsrIivTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 308 (869)
+++-++|+|+++ ++..+|.+|.+ ..++.. ......+.+.+++.+++.+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--M- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C--C-
Confidence 566688999998 45555666655 445433 2334678999999999988876532 1 1
Q ss_pred CccHHHHHHHHHHHcCCCchhHH
Q 040255 309 DASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 309 ~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+ .+.+..++..++|.|....
T Consensus 183 ~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHHH
Confidence 1 2336688999999996443
No 297
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.024 Score=57.22 Aligned_cols=30 Identities=27% Similarity=0.281 Sum_probs=27.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..+.+|||-|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988765
No 298
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.10 E-value=0.017 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+|+|.|..|.||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 299
>PRK06762 hypothetical protein; Provisional
Probab=95.08 E-value=0.018 Score=56.49 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
++|.|.|++|+||||+|+.+.+++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999999886
No 300
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.03 E-value=0.096 Score=55.26 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh--cCcc----CceEEEEeehhhhccCCHHHHH
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI--SRHF----EGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~~F----~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
..|-++|..+=..-.+.-|+|.+|+|||+||..++-.+ .... ..++|+. ....+...++.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~~f~~~Rl~ 90 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEGTFSPERLQ 90 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSSSS-HHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCCCCCHHHHH
Confidence 34555564222233578899999999999998877532 2221 2467776 33345555554
No 301
>PRK04040 adenylate kinase; Provisional
Probab=95.01 E-value=0.023 Score=56.94 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=23.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|+|++|+||||+|+.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999875
No 302
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.98 E-value=0.28 Score=48.78 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=62.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHH------HHHHHHhhcCC-----C-CCC---
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ------KKLLSELSKDG-----N-MRN--- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~------~~il~~l~~~~-----~-~~~--- 239 (869)
.+++|.|..|.|||||++.++.... ...+.+++... ... ......+. -+++..++-.. . ...
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 5799999999999999999987543 24555555321 111 11111111 11333333111 1 111
Q ss_pred --HHHHHHHHccCceEEEecCCC--------------------C-CcEEEEEeCchhhhhhcCCCeEEEe
Q 040255 240 --IESQLNRLARKKVRIVFDDVT--------------------S-GSRVIITTRDKQVLKNCWANKKYRM 286 (869)
Q Consensus 240 --~~~l~~~L~~kr~LlVLDDv~--------------------~-gsrIivTTR~~~v~~~~~~~~~~~l 286 (869)
.-.+.+.+...+-+++||+-- . |..||++|.+...+... .+.++.+
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 233455667788899999985 2 77889999887765432 2345444
No 303
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.98 E-value=0.97 Score=46.94 Aligned_cols=209 Identities=15% Similarity=0.133 Sum_probs=115.2
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC------ccCceEEEEeehh------hhcc-
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR------HFEGSYFALNVRE------AEET- 217 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~------~s~~- 217 (869)
+.+.++++.-.++.++.. .++.+-..++|+.|.||-|.+.++.+++-+ +-+...|...... ++..
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 346777777777777665 356778889999999999999988885422 2334445432111 1111
Q ss_pred ----------CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCce-EEEecCCC------------------CCcEEEEE
Q 040255 218 ----------GGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKV-RIVFDDVT------------------SGSRVIIT 268 (869)
Q Consensus 218 ----------~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~-LlVLDDv~------------------~gsrIivT 268 (869)
..-..+.++++.++.+...-. .-..+.| ++|+..++ ..+|+|+.
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie-------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~ 163 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIE-------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILV 163 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchh-------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEE
Confidence 111334455555554321110 0011222 44454444 45566553
Q ss_pred eCch--hhhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHHHHhhhc-------
Q 040255 269 TRDK--QVLKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVP-LALKVLGCYLC------- 338 (869)
Q Consensus 269 TR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g~~L~------- 338 (869)
.-+- -+...-...-.++++..+++|....++.-+-+....-+ .+++.+|+++++|.- .||-++ ...+
T Consensus 164 cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml-E~~~~~n~~~~ 240 (351)
T KOG2035|consen 164 CNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML-EAVRVNNEPFT 240 (351)
T ss_pred ecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH-HHHHhcccccc
Confidence 2211 11111112346799999999999999887754443333 688999999999864 333322 1111
Q ss_pred C----CCHHHHHHHHHHHh-----cCCCchhhhHHHhhhccC
Q 040255 339 G----RSKEVWESAMRKLE-----IIPHVEIEEVLKISYDSL 371 (869)
Q Consensus 339 ~----~~~~~w~~~l~~l~-----~~~~~~i~~~L~~Sy~~L 371 (869)
. -..-+|+-++.+.. +.....+..+=..=|+-|
T Consensus 241 a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1 13568999888753 233344444444445443
No 304
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.98 E-value=0.028 Score=58.40 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=26.7
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 171 SEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.....+|+|.|+.|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4567899999999999999999999876543
No 305
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.007 Score=37.36 Aligned_cols=18 Identities=50% Similarity=0.636 Sum_probs=8.0
Q ss_pred cceecccccccccccCccc
Q 040255 606 VKRLILSNNSNLERIPESI 624 (869)
Q Consensus 606 L~~L~Ls~n~~l~~lP~~i 624 (869)
|++|+|++| .++.+|+++
T Consensus 2 L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp ESEEEETSS-EESEEGTTT
T ss_pred ccEEECCCC-cCEeCChhh
Confidence 444444444 444444443
No 306
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.95 E-value=0.021 Score=54.23 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 307
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.93 E-value=0.025 Score=57.81 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+.-.+|+|+|++|+||||||+++...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998654
No 308
>PRK04132 replication factor C small subunit; Provisional
Probab=94.90 E-value=0.29 Score=59.65 Aligned_cols=135 Identities=16% Similarity=0.070 Sum_probs=79.6
Q ss_pred cCCchHHHHHHHHHHhhc-CccCc-eEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCC
Q 040255 182 IGGISKITIAGAVFNKIS-RHFEG-SYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDV 259 (869)
Q Consensus 182 ~gGiGKTtLA~~v~~~~~-~~F~~-~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv 259 (869)
+.++||||+|.++++++- ..+.. ..-+. .+...++..+.+.+ ........ .-..+.-++|||++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR~iI-k~~a~~~~---------~~~~~~KVvIIDEa 639 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIREKV-KEFARTKP---------IGGASFKIIFLDEA 639 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHHHHH-HHHHhcCC---------cCCCCCEEEEEECc
Confidence 678999999999999863 23322 22333 23333455444332 22211000 00124579999999
Q ss_pred C------------------CCcEEEEEeCch-hhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHH
Q 040255 260 T------------------SGSRVIITTRDK-QVLKN-CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKA 319 (869)
Q Consensus 260 ~------------------~gsrIivTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i 319 (869)
+ ...++|.+|.+. .+... ...+..+++.+++.++..+.+.+.+-...-. -..+....|
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~e~L~~I 717 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAI 717 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHH
Confidence 8 355666655543 33222 2345789999999999988877665322211 124577899
Q ss_pred HHHcCCCchhHHH
Q 040255 320 IKYAQGVPLALKV 332 (869)
Q Consensus 320 ~~~~~GlPLal~~ 332 (869)
++.++|-+.....
T Consensus 718 a~~s~GDlR~AIn 730 (846)
T PRK04132 718 LYIAEGDMRRAIN 730 (846)
T ss_pred HHHcCCCHHHHHH
Confidence 9999998854433
No 309
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.89 E-value=0.021 Score=56.30 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...|.|+|++|.||||+|+++++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999874
No 310
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.88 E-value=0.26 Score=48.73 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
.+++|+|+.|.|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5799999999999999998863
No 311
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.097 Score=57.68 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..++|+|+|.+|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45799999999999999999998866543
No 312
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.24 Score=54.00 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCchHH-HHHHHHHHhhcCcc
Q 040255 172 EGVCKLRIWGIGGISKI-TIAGAVFNKISRHF 202 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKT-tLA~~v~~~~~~~F 202 (869)
-.+..+.++|..|.||| |||+++..-..+.|
T Consensus 177 ~P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~~w 208 (461)
T KOG3928|consen 177 HPVKRFVLDGEPGTGKSIALAQAVHYAADQKW 208 (461)
T ss_pred CcceEEEEeCCCCCchhhHHHHHHHHHhcCCe
Confidence 34667789999999999 88888877554444
No 313
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.84 E-value=1.2 Score=49.58 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=61.2
Q ss_pred CceEEEecCCC-----------------------CCcEEEEEeCchhhhhhc------CCCeEEEeCCCCHHHHHHHHHH
Q 040255 250 KKVRIVFDDVT-----------------------SGSRVIITTRDKQVLKNC------WANKKYRMKELVYADAHKLFCQ 300 (869)
Q Consensus 250 kr~LlVLDDv~-----------------------~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~ 300 (869)
+|=+||+|+.. .=-+||++|-+....... .+.+.+.+...+.+-|.++...
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 36789999996 445888888776544322 2346789999999999999988
Q ss_pred hhcCCCCC-------------C-----ccHHHHHHHHHHHcCCCchhHHHHHhhhc
Q 040255 301 WAFGGDHL-------------D-----ASHIELTDKAIKYAQGVPLALKVLGCYLC 338 (869)
Q Consensus 301 ~af~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~~g~~L~ 338 (869)
+.-..... . .....-....++..||=-.-|..+++.++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 76432110 0 12344556677888888888888887775
No 314
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.80 E-value=0.016 Score=52.36 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.6
Q ss_pred EEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 177 LRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
|-|+|.+|+|||+||+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999888665443
No 315
>PRK13947 shikimate kinase; Provisional
Probab=94.76 E-value=0.022 Score=56.08 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.7
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
-|.|+||+|+||||+|+.+.+++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999987543
No 316
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.75 E-value=0.22 Score=49.31 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=54.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEe--ehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCce
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALN--VREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKV 252 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~--~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~ 252 (869)
.+++|+|..|.|||||.+.+..-+.. ..+.+.+.. +.-..+...+..=++ ..-.+.+.+..++-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~~LSgGq~-------------qrv~laral~~~p~ 91 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYIDLSGGEL-------------QRVAIAAALLRNAT 91 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccCCCCHHHH-------------HHHHHHHHHhcCCC
Confidence 57999999999999999998874432 234443321 100111111000000 02233455556677
Q ss_pred EEEecCCC--------------------C-CcEEEEEeCchhhhhhcCCCeEEEeC
Q 040255 253 RIVFDDVT--------------------S-GSRVIITTRDKQVLKNCWANKKYRMK 287 (869)
Q Consensus 253 LlVLDDv~--------------------~-gsrIivTTR~~~v~~~~~~~~~~~l~ 287 (869)
+++||+-- . +..||++|.+...+... .+.++.+.
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 88888774 3 36788888887665543 23455554
No 317
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.72 E-value=0.025 Score=56.64 Aligned_cols=26 Identities=23% Similarity=0.078 Sum_probs=23.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+.++|.|.|++|+||||+|+.+..+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999865
No 318
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.70 E-value=0.6 Score=51.08 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=36.1
Q ss_pred CCcEEEEEeCchh-hhhhc-CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh
Q 040255 261 SGSRVIITTRDKQ-VLKNC-WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 261 ~gsrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 329 (869)
.+..+|++|.+.. +.... .....+.+.+++.+++.+.+.... . ... . ..+..++|-|+.
T Consensus 142 ~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 142 PQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V-AEP-E----ERLAFHSGAPLF 202 (325)
T ss_pred CCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-CcH-H----HHHHHhCCChhh
Confidence 3566777777654 33221 234688999999999988886542 1 111 1 123568898864
No 319
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.051 Score=53.82 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=42.5
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc-CccCc-eEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHccC
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS-RHFEG-SYFALNVREAEETGGIKDLQKKLLSELSKDGNMRN---IESQLNRLARK 250 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~-~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~---~~~l~~~L~~k 250 (869)
.|.|.|.+|.||||+|+.+.+++. .|.+. -+|...+. .. ..+..++-.-+.......+ ...+..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~---~~---t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~ 75 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIA---ER---TELGEEIKKYIDKGELVPDEIVNGLVKERLDEA 75 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhc---cC---ChHHHHHHHHHHcCCccchHHHHHHHHHHHHhh
Confidence 377999999999999999999742 23331 12221111 11 2333333333443332222 35555555432
Q ss_pred --ceEEEecCC
Q 040255 251 --KVRIVFDDV 259 (869)
Q Consensus 251 --r~LlVLDDv 259 (869)
+-.+|+|+.
T Consensus 76 d~~~~~I~dg~ 86 (178)
T COG0563 76 DCKAGFILDGF 86 (178)
T ss_pred cccCeEEEeCC
Confidence 227888888
No 320
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.68 E-value=0.082 Score=61.87 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=41.2
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
....++|....++++.+.+..-...-.-|.|+|..|+|||++|+++++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34679999999999988876544445578899999999999999999853
No 321
>PRK06547 hypothetical protein; Provisional
Probab=94.67 E-value=0.03 Score=55.17 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
....+|+|.|++|.||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999864
No 322
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.66 E-value=0.027 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEecCCchHHHHHHHHHHhh
Q 040255 177 LRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~ 198 (869)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 323
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.34 Score=53.76 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=78.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC------CCCCCHHHHHHHHc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD------GNMRNIESQLNRLA 248 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~------~~~~~~~~l~~~L~ 248 (869)
|=-.++|++|.|||++..++++.+. .-++.-...++..+.+ ++.++...... +.+.. -.++.+..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n~d----Lr~LL~~t~~kSIivIEDIDcs-~~l~~~~~ 306 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLDSD----LRHLLLATPNKSILLIEDIDCS-FDLRERRK 306 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCcHH----HHHHHHhCCCCcEEEEeecccc-cccccccc
Confidence 4467899999999999999998653 2233333333333333 33333332211 11110 00011110
Q ss_pred c---------C-----ceEEEecCCCC---CcEEEE-EeCchhhhhhc-----CCCeEEEeCCCCHHHHHHHHHHhhcCC
Q 040255 249 R---------K-----KVRIVFDDVTS---GSRVII-TTRDKQVLKNC-----WANKKYRMKELVYADAHKLFCQWAFGG 305 (869)
Q Consensus 249 ~---------k-----r~LlVLDDv~~---gsrIiv-TTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~ 305 (869)
. . -.|=.+|.+|. +-|||| ||-..+-+... ..+..+.|.--+.+.-..|+.++....
T Consensus 307 ~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 307 KKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred cccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 0 1 13446888883 347755 66655443211 233456788888888888887776332
Q ss_pred CCCCccHHHHHHHHHHHcCCCchhHHHHHhhh
Q 040255 306 DHLDASHIELTDKAIKYAQGVPLALKVLGCYL 337 (869)
Q Consensus 306 ~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 337 (869)
. +. .+..+|.+...|.-+.-..++..|
T Consensus 387 ~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 387 E-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred C-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 2 22 345555555555555545555544
No 324
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.57 E-value=0.082 Score=56.09 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
+.|.|+|.+|.||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999986654
No 325
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.43 Score=48.68 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=36.6
Q ss_pred CcceeccccHHHHHHhhccC-----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 151 KGLVGVECSIEEIESLLCIG-----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
.++=|.+..++++.+.+... -...+=|..+|++|.|||-+|++.+.+-..-|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 44567777777777655321 12344577899999999999999887655444
No 326
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.29 Score=55.02 Aligned_cols=48 Identities=25% Similarity=0.208 Sum_probs=33.5
Q ss_pred CcceeccccH---HHHHHhhccCC------CC-eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 151 KGLVGVECSI---EEIESLLCIGS------EG-VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 151 ~~~vGr~~~~---~~l~~~L~~~~------~~-~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+++-|.|+.. ++|++.|.... +. .+=|.++|++|.|||-||++++-+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567877654 55555664321 11 3457899999999999999998753
No 327
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.45 E-value=0.32 Score=49.72 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=35.5
Q ss_pred HHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCchhhhhhcCCCeEEEeC
Q 040255 240 IESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDKQVLKNCWANKKYRMK 287 (869)
Q Consensus 240 ~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~~v~~~~~~~~~~~l~ 287 (869)
.-.+.+.|...+-+|+.|+-- .|..||+.|-|..++..+ +.++.+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 345667888899999999864 578999999999999865 4555544
No 328
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.096 Score=53.41 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=36.0
Q ss_pred eeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEee
Q 040255 154 VGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNV 211 (869)
Q Consensus 154 vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 211 (869)
=|=.+++++|.+.... +-+..+=|.++|++|.|||-+|++|+|+-. .||+..+
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirvi 243 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVI 243 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeeh
Confidence 3455566666554321 224456688999999999999999999854 4666643
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.38 E-value=0.15 Score=50.27 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.7
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
++.+.|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999876654
No 330
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.37 E-value=0.36 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+++|+|..|+|||||++.+...+
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998743
No 331
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.36 E-value=0.14 Score=55.78 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876543
No 332
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.36 E-value=0.19 Score=49.11 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=58.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhc-CCCCCC---HHHHHHHHccC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSK-DGNMRN---IESQLNRLARK 250 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~-~~~~~~---~~~l~~~L~~k 250 (869)
.+++|.|..|.|||||.+.++.... ...+.+++.... .. ......... ..+.- ...... .-.+.+.+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~---~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS-FASPRDARR---AGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC-cCCHHHHHh---cCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 5799999999999999999987543 234555554211 11 011111100 00110 000000 22344556667
Q ss_pred ceEEEecCCC--------------------CCcEEEEEeCchhhhhhcCCCeEEEe
Q 040255 251 KVRIVFDDVT--------------------SGSRVIITTRDKQVLKNCWANKKYRM 286 (869)
Q Consensus 251 r~LlVLDDv~--------------------~gsrIivTTR~~~v~~~~~~~~~~~l 286 (869)
+-+++||+.- .|..||++|.+...+... .+.++.+
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 7888899885 467888999887654432 2344444
No 333
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.34 E-value=0.043 Score=54.62 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.3
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcC
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
+|+|.|.+|.||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987654
No 334
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.28 Score=51.10 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=38.3
Q ss_pred CcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 151 KGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.++.|.+...+.|.+..-. ....-+-|.++|++|.||+-||++|+-+...
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 5678999888888764321 2234677889999999999999999986543
No 335
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.32 E-value=0.18 Score=57.81 Aligned_cols=169 Identities=16% Similarity=0.168 Sum_probs=91.4
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC------ccCceEEEEeehhhhccCCHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR------HFEGSYFALNVREAEETGGIK 221 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~~s~~~~~~ 221 (869)
...+++||-+.-...|...+..+. -...-...|+-|+||||+|+.++..+.. ..-+.|-.| ++.... ...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g-~~~ 88 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG-SLI 88 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC-Ccc
Confidence 344678999988888888886432 1233456899999999999999985421 111222211 001000 000
Q ss_pred HHHH-HHHHHhhcCCCCC-CHHHHHHHH-----ccCceEEEecCCC----------------CCc--EEEEEeCch-hhh
Q 040255 222 DLQK-KLLSELSKDGNMR-NIESQLNRL-----ARKKVRIVFDDVT----------------SGS--RVIITTRDK-QVL 275 (869)
Q Consensus 222 ~l~~-~il~~l~~~~~~~-~~~~l~~~L-----~~kr~LlVLDDv~----------------~gs--rIivTTR~~-~v~ 275 (869)
++.+ +-++ .... +...+.+.. .+|.=+.|+|.|. |.+ ..|..|.+. .+.
T Consensus 89 DviEiDaAS-----n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 89 DVIEIDAAS-----NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cchhhhhhh-----ccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 0000 0000 0001 133333333 3455588999997 333 335555543 332
Q ss_pred h-hcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCc
Q 040255 276 K-NCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 276 ~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 327 (869)
. ....+..|.++.++.++-...+...+-...-. ...+....|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCCh
Confidence 2 22345789999999998888877766332222 22344556666666643
No 336
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.30 E-value=0.19 Score=54.45 Aligned_cols=49 Identities=16% Similarity=0.041 Sum_probs=35.7
Q ss_pred HHHHHhhc-cCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 161 EEIESLLC-IGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..|-.+|. .+=..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555554 33344578899999999999999998876655556677876
No 337
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.28 E-value=0.047 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
-.+|.+.|.-|.||||+++.+++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999864
No 338
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.25 E-value=0.029 Score=55.97 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+|.|+|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 339
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.17 Score=52.51 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=39.3
Q ss_pred CcceeccccHHHHHHhhccC-----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccC
Q 040255 151 KGLVGVECSIEEIESLLCIG-----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFE 203 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 203 (869)
.++=|.++.+++|.+-.... -....=|-++|.+|.|||-||++|+|+-+.-|-
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 34557888888888765431 123445678999999999999999998776654
No 340
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.24 E-value=0.037 Score=54.83 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
++|.+.|++|.||||+|+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999999999999999988754
No 341
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.23 E-value=0.2 Score=50.63 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.5
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
+.+...+. ++-+++.|.|.+|.||||+++.+.+.+...
T Consensus 8 ~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 34444444 234678889999999999999988865544
No 342
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.22 E-value=0.39 Score=47.65 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=59.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhh---cC------------CCCCC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELS---KD------------GNMRN 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~---~~------------~~~~~ 239 (869)
.+++|.|..|.|||||++.+...... -.+.+++... .. ......+-..+. +. .....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~------~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PV------SDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EH------HHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 47999999999999999999875432 2344444311 00 000000111110 00 00011
Q ss_pred -----HHHHHHHHccCceEEEecCCC-------------------CCcEEEEEeCchhhhhhcCCCeEEEeC
Q 040255 240 -----IESQLNRLARKKVRIVFDDVT-------------------SGSRVIITTRDKQVLKNCWANKKYRMK 287 (869)
Q Consensus 240 -----~~~l~~~L~~kr~LlVLDDv~-------------------~gsrIivTTR~~~v~~~~~~~~~~~l~ 287 (869)
.-.+.+.+..++=+++||+.. .+..||++|.+...... .++++.+.
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 233445567788899999986 56778899988877653 45555543
No 343
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.20 E-value=0.33 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
..++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4699999999999999999874
No 344
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.18 E-value=0.037 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+|+|-||=|+||||||+.+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 345
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.18 E-value=0.12 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEecCCchHHHHHHHHHHhhcC
Q 040255 177 LRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
|.++|++|+||||+|+++......
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999987654
No 346
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.15 E-value=0.019 Score=35.38 Aligned_cols=21 Identities=38% Similarity=0.809 Sum_probs=15.0
Q ss_pred ccchhcccccccccCCCCcCC
Q 040255 582 NLEYLTVKGTTIRELPESLGR 602 (869)
Q Consensus 582 ~L~~L~L~~n~i~~lP~~i~~ 602 (869)
+|++|+|++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777776654
No 347
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.36 Score=47.64 Aligned_cols=104 Identities=10% Similarity=0.150 Sum_probs=59.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhh---cCCC---C--------CC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELS---KDGN---M--------RN 239 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~---~~~~---~--------~~ 239 (869)
-.+++|+|..|.|||||++.++.... ...+.+++.... ... .. .... ..+. +... . ..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~-~~-~~~~----~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKK-EP-EEVK----RRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-ccc-ch-Hhhh----ccEEEEecCCccccCCcHHHHhhcC
Confidence 35799999999999999999987543 234445443210 000 00 0000 0010 0000 0 10
Q ss_pred -----HHHHHHHHccCceEEEecCCC--------------------CCcEEEEEeCchhhhhhcCCCeEEEe
Q 040255 240 -----IESQLNRLARKKVRIVFDDVT--------------------SGSRVIITTRDKQVLKNCWANKKYRM 286 (869)
Q Consensus 240 -----~~~l~~~L~~kr~LlVLDDv~--------------------~gsrIivTTR~~~v~~~~~~~~~~~l 286 (869)
.-.+.+.+..++=++++|+.. .|..||++|.+...+... .++++.+
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 223455667788899999986 567789999888766543 3445544
No 348
>PRK13949 shikimate kinase; Provisional
Probab=94.14 E-value=0.037 Score=54.48 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
-|.|+|++|.||||+|+.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 349
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.13 E-value=0.068 Score=50.73 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=26.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc-CccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS-RHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 209 (869)
++|.|+|..|+|||||++.+.+.+. ..+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4799999999999999999999876 4455554544
No 350
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.11 E-value=0.51 Score=54.79 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=37.9
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
..++|....+.++...+..-...-..|.|.|.+|.|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899998888887777543444456889999999999999999884
No 351
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.10 E-value=0.31 Score=48.15 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=59.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCC---------CC-----H
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNM---------RN-----I 240 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~---------~~-----~ 240 (869)
.+++|+|..|.|||||.+.++.... ...+.+.+... ... ..........+ .-+.++..- .. .
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence 4799999999999999999987543 23444444311 010 01111111110 000000000 11 2
Q ss_pred HHHHHHHccCceEEEecCCC--------------------CCcEEEEEeCchhhhhhcCCCeEEEeC
Q 040255 241 ESQLNRLARKKVRIVFDDVT--------------------SGSRVIITTRDKQVLKNCWANKKYRMK 287 (869)
Q Consensus 241 ~~l~~~L~~kr~LlVLDDv~--------------------~gsrIivTTR~~~v~~~~~~~~~~~l~ 287 (869)
-.+.+.+..++=+++||+.. .|..||++|.+...+.. .++++.+.
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l~ 169 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVLE 169 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEEE
Confidence 23445566677799999985 46788888888876643 45565553
No 352
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.09 E-value=0.068 Score=52.74 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
+.|-+.|.+|+||||+|++++..+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 356789999999999999999866554
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.08 E-value=0.16 Score=56.10 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=27.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCcc--CceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHF--EGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 209 (869)
-.+++++|+.|+||||++..+..+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 46899999999999999999998754443 3444544
No 354
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.05 E-value=0.033 Score=55.51 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.3
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+|+|.|.+|.||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 355
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.05 E-value=0.041 Score=53.02 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEEecCCchHHHHHHHHHHhhc
Q 040255 177 LRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
|.|+|++|.||||+|+.+..++.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998763
No 356
>PRK06217 hypothetical protein; Validated
Probab=94.04 E-value=0.043 Score=54.83 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.|.|.|++|.||||+|+++.+++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999764
No 357
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.00 E-value=0.033 Score=56.38 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+|+|.|..|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 358
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.00 E-value=0.56 Score=48.05 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.+++|+|..|.|||||++.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.16 Score=49.23 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=60.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhc-CCCCCC---HHHHHHHHccC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSK-DGNMRN---IESQLNRLARK 250 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~-~~~~~~---~~~l~~~L~~k 250 (869)
.+++|+|..|.|||||++.+...+. ...+.+++.... ... ........ .+.- ...... .-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~-~~~~~~~~----~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK-LPLEELRR----RIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc-CCHHHHHh----ceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 5799999999999999999988553 245666654211 100 00111111 1110 000000 22344555666
Q ss_pred ceEEEecCCC--------------------CCcEEEEEeCchhhhhhcCCCeEEEeC
Q 040255 251 KVRIVFDDVT--------------------SGSRVIITTRDKQVLKNCWANKKYRMK 287 (869)
Q Consensus 251 r~LlVLDDv~--------------------~gsrIivTTR~~~v~~~~~~~~~~~l~ 287 (869)
+=+++||+.. .+..+|++|.+...+... .++++.+.
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 7889999886 446788888887766553 34555543
No 360
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.96 E-value=0.035 Score=57.18 Aligned_cols=24 Identities=25% Similarity=0.172 Sum_probs=22.0
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 361
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.95 E-value=0.04 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+|.|.|++|.||||+|+.+..+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998753
No 362
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.93 E-value=0.39 Score=47.08 Aligned_cols=106 Identities=16% Similarity=0.086 Sum_probs=57.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEe---ehhhhccCCH--HHHHHHHHHHhhcCCCCCC-----HHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALN---VREAEETGGI--KDLQKKLLSELSKDGNMRN-----IESQL 244 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~s~~~~~--~~l~~~il~~l~~~~~~~~-----~~~l~ 244 (869)
.+++|+|..|.|||||++.+...+.. ..+.+++.. +.-+.+...+ ..+.+.+.-. ...... .-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 57999999999999999999875432 123333211 0001111111 1222222110 111111 33344
Q ss_pred HHHccCceEEEecCCC-----------------CCcEEEEEeCchhhhhhcCCCeEEEe
Q 040255 245 NRLARKKVRIVFDDVT-----------------SGSRVIITTRDKQVLKNCWANKKYRM 286 (869)
Q Consensus 245 ~~L~~kr~LlVLDDv~-----------------~gsrIivTTR~~~v~~~~~~~~~~~l 286 (869)
+.+..++=+++||+-- -+..||++|.+...... .++++.+
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhh--CCEEEEE
Confidence 5666777888999875 35678888888766532 4455554
No 363
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.93 E-value=0.22 Score=56.49 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=49.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC-------CCCCC--------
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD-------GNMRN-------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~-------~~~~~-------- 239 (869)
..++|.|..|+|||||+..+....+.+...++-+..+++- ...+.++.++++..-..+ ..+..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER--~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999887665443333333344332 123344555544321110 00010
Q ss_pred --HHHHHHHH---ccCceEEEecCCC
Q 040255 240 --IESQLNRL---ARKKVRIVFDDVT 260 (869)
Q Consensus 240 --~~~l~~~L---~~kr~LlVLDDv~ 260 (869)
.-.+.+++ +++.+||++||+-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 22344555 6799999999994
No 364
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.92 E-value=0.27 Score=53.46 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHH--hhc----CccCceEEEEeehhhhccCCHHHHHH
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFN--KIS----RHFEGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~----~~F~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
..|-++|..+=..-+++-|+|.+|+|||+||..++- .+. ..=..++|+. ....+...++.+
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi~~ 149 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRIRA 149 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHHHH
Confidence 455556654434557889999999999999988664 222 1123677886 333345555543
No 365
>PRK09354 recA recombinase A; Provisional
Probab=93.92 E-value=0.22 Score=54.50 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=36.2
Q ss_pred HHHHHhhc-cCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 161 EEIESLLC-IGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..|-.+|. .+=..-+++-|+|++|+||||||.++.......=..++|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 44555565 33345578999999999999999998876655556778886
No 366
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.91 E-value=0.12 Score=57.46 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=35.4
Q ss_pred cceeccccHHHHHHhhccC------------CCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 152 GLVGVECSIEEIESLLCIG------------SEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
.+||.++.++.+.-.+... ....+-|.++|++|+|||++|+++...+...|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4677776666664433321 11235688999999999999999999776544
No 367
>PRK13948 shikimate kinase; Provisional
Probab=93.87 E-value=0.048 Score=54.23 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=24.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..+.|.++||.|.||||+++.+.+++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4577899999999999999999998743
No 368
>PRK05439 pantothenate kinase; Provisional
Probab=93.87 E-value=0.15 Score=55.02 Aligned_cols=30 Identities=23% Similarity=0.126 Sum_probs=25.6
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 171 SEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
....-+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999886653
No 369
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.86 E-value=0.071 Score=52.76 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
-.+|.|.|++|.||||+|++++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999997643
No 370
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.85 E-value=0.19 Score=55.53 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=49.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE-eehhhhccCCHHHHHHHHHHHhhcCCCCCC-HHHHHHHHccCc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL-NVREAEETGGIKDLQKKLLSELSKDGNMRN-IESQLNRLARKK 251 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~s~~~~~~~l~~~il~~l~~~~~~~~-~~~l~~~L~~kr 251 (869)
-..|.|.|+.|.||||+.+++.+.+......+++.. +..+.... . ...+..+........+ .+.++..|+..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~----~~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-N----KRSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-C----ccceEEccccCCCCcCHHHHHHHhhccCC
Confidence 367999999999999999999988776655555543 11110000 0 0000000000000112 566788888899
Q ss_pred eEEEecCCC
Q 040255 252 VRIVFDDVT 260 (869)
Q Consensus 252 ~LlVLDDv~ 260 (869)
=.|++|.+.
T Consensus 197 d~i~vgEir 205 (343)
T TIGR01420 197 DVILIGEMR 205 (343)
T ss_pred CEEEEeCCC
Confidence 999999995
No 371
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.84 E-value=0.2 Score=56.86 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=26.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc--CccCceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS--RHFEGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~ 209 (869)
-+++.++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 36899999999999999998887654 3323445554
No 372
>PRK13946 shikimate kinase; Provisional
Probab=93.83 E-value=0.045 Score=54.74 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
+.|.++||+|.||||+|+.+.+++.-
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 56899999999999999999998743
No 373
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.83 E-value=0.035 Score=65.79 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=47.0
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC-ccCceEEEEe
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR-HFEGSYFALN 210 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~ 210 (869)
+...+.++|.+..++.|...+... +.+.++|.+|.||||+|+++.+.+.. +++...|..+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 344467899988888888777543 36889999999999999999997654 3577888875
No 374
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.80 E-value=0.14 Score=58.65 Aligned_cols=84 Identities=24% Similarity=0.229 Sum_probs=48.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC-ccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCC----------HHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRN----------IESQ 243 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~----------~~~l 243 (869)
...+|+|.+|.|||||++.+.+.+.. +=+..+++..+.+-.. .+..+.+.+-.++........ .-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpe--EVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPE--EVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchh--hHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999997754 3345555655544221 222232222111111111111 1223
Q ss_pred HHHH--ccCceEEEecCCC
Q 040255 244 LNRL--ARKKVRIVFDDVT 260 (869)
Q Consensus 244 ~~~L--~~kr~LlVLDDv~ 260 (869)
.+++ .++.+||++|++.
T Consensus 495 Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHcCCCEEEEEeCch
Confidence 3444 5799999999984
No 375
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.78 E-value=0.18 Score=51.58 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=45.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhh-cC------CCCCC--------
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELS-KD------GNMRN-------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~-~~------~~~~~-------- 239 (869)
..++|.|.+|+|||+|+..+.+..... ..+++. +++- ...+.++.+++...-. .. ..+..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~-iGer--~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL-IGER--GREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE-ESEC--HHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeee-cccc--chhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 458899999999999999999876432 234544 2211 1234455555533211 00 00000
Q ss_pred --HHHHHHHH--ccCceEEEecCC
Q 040255 240 --IESQLNRL--ARKKVRIVFDDV 259 (869)
Q Consensus 240 --~~~l~~~L--~~kr~LlVLDDv 259 (869)
.-.+.+++ +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 11122333 689999999998
No 376
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.34 Score=53.12 Aligned_cols=93 Identities=22% Similarity=0.247 Sum_probs=57.5
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCC---
Q 040255 160 IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGN--- 236 (869)
Q Consensus 160 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~--- 236 (869)
+.++...|..+--.-.+|.|=|-+|||||||.-++..+++.+- .+.+|+- ......+.. -...++-...
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~Qikl-RA~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQIKL-RADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHHHH-HHHHhCCCccceE
Confidence 4556655643222335788999999999999999999988766 7777762 122222211 1223331111
Q ss_pred ---CCCHHHHHHHHc-cCceEEEecCCC
Q 040255 237 ---MRNIESQLNRLA-RKKVRIVFDDVT 260 (869)
Q Consensus 237 ---~~~~~~l~~~L~-~kr~LlVLDDv~ 260 (869)
+.+.+.+.+.+. .++-++|+|-+.
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 124666666665 567899999885
No 377
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.74 E-value=0.052 Score=52.74 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
+-|.++||.|.||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3478999999999999999999876655
No 378
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.70 E-value=0.095 Score=56.79 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=28.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.+++...|.||+||||+|.+.+-..+.....+.-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998877766655555554
No 379
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.69 E-value=0.083 Score=53.49 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=28.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
....+|+|+|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3456899999999999999999999764432234454
No 380
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.67 E-value=0.25 Score=60.41 Aligned_cols=165 Identities=16% Similarity=0.110 Sum_probs=83.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHh-hcCccCceEEEEe--------ehhhhccCCH-HHHHHHHHHHhhcCCCCCCHHH
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNK-ISRHFEGSYFALN--------VREAEETGGI-KDLQKKLLSELSKDGNMRNIES 242 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~~--------~~~~s~~~~~-~~l~~~il~~l~~~~~~~~~~~ 242 (869)
+.+++.|.|+.|.||||+.+.+.-. +-.+ ..+++.. ........+. ..+... ++.+.. ....
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq--~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~-LStfS~-----~m~~ 392 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQ--SGIPIPANEHSEIPYFEEIFADIGDEQSIEQN-LSTFSG-----HMKN 392 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHH--hCCCccCCccccccchhheeeecChHhHHhhh-hhHHHH-----HHHH
Confidence 3478999999999999999998763 1111 1111110 0000000000 111110 000000 0122
Q ss_pred HHHHHc--cCceEEEecCCC---------------------CCcEEEEEeCchhhhhhcCCC---eEEEeCCCCHHHHHH
Q 040255 243 QLNRLA--RKKVRIVFDDVT---------------------SGSRVIITTRDKQVLKNCWAN---KKYRMKELVYADAHK 296 (869)
Q Consensus 243 l~~~L~--~kr~LlVLDDv~---------------------~gsrIivTTR~~~v~~~~~~~---~~~~l~~L~~~ea~~ 296 (869)
+...+. ..+-|+++|..- .|+.+|+||-...+....... ..+.|. ++. +.
T Consensus 393 ~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~-- 468 (771)
T TIGR01069 393 ISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ET-- 468 (771)
T ss_pred HHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CC--
Confidence 223333 478999999996 688999999998765432111 111221 111 11
Q ss_pred HHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHHHHHh
Q 040255 297 LFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAMRKLE 353 (869)
Q Consensus 297 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~ 353 (869)
+-..+-+....+.. ..+-.|++++ |+|-.+..-|..+.+....+.+..+++|.
T Consensus 469 l~p~Ykl~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 469 LSPTYKLLKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CceEEEECCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 10111111222222 2355666655 89998888888887665556666666654
No 381
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=0.0099 Score=60.99 Aligned_cols=76 Identities=21% Similarity=0.196 Sum_probs=53.2
Q ss_pred CCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCC--CCcCCccccceecccccccccccCcc-----ccCCC
Q 040255 558 TFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELP--ESLGRLSWVKRLILSNNSNLERIPES-----IRHLS 628 (869)
Q Consensus 558 ~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP--~~i~~l~~L~~L~Ls~n~~l~~lP~~-----i~~L~ 628 (869)
+++.|++|.|+-|+ +.++-+. .++|++|+|..|.|..+- .-+.+|++|++|-|..|+-.+.-+.. +.-|+
T Consensus 39 kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 45666666666665 5555444 677888888888877653 23567889999999988766665543 56678
Q ss_pred CCCEEe
Q 040255 629 KLTFLF 634 (869)
Q Consensus 629 ~L~~L~ 634 (869)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 888876
No 382
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.65 E-value=0.53 Score=58.46 Aligned_cols=178 Identities=21% Similarity=0.188 Sum_probs=91.3
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCc-c---CceEEEEeehhhhccCCHH--HHHHHHHHHhhcCCCCC-CHHHHHHHHc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRH-F---EGSYFALNVREAEETGGIK--DLQKKLLSELSKDGNMR-NIESQLNRLA 248 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~-F---~~~~~~~~~~~~s~~~~~~--~l~~~il~~l~~~~~~~-~~~~l~~~L~ 248 (869)
-+.|+|-+|.||||+...++-..... + +..+|+..-.......... .+..-+...+....... ......+.+.
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~l~ 303 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQELLK 303 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHHHh
Confidence 68899999999999999888743322 2 2334433210000011111 22222222222111111 1333357889
Q ss_pred cCceEEEecCCC---------------------CCcEEEEEeCchhhhhhcCCCeEEEeCCCCHHHHHH--------HHH
Q 040255 249 RKKVRIVFDDVT---------------------SGSRVIITTRDKQVLKNCWANKKYRMKELVYADAHK--------LFC 299 (869)
Q Consensus 249 ~kr~LlVLDDv~---------------------~gsrIivTTR~~~v~~~~~~~~~~~l~~L~~~ea~~--------Lf~ 299 (869)
..++|+.+|.++ +..++|+|+|....-.....-..+++..+.++.-.. .+.
T Consensus 304 ~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~~~~ 383 (824)
T COG5635 304 TGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLDAFI 383 (824)
T ss_pred ccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHHH
Confidence 999999999998 889999999976554333333344555554443322 222
Q ss_pred HhhcCCCCCC--ccHHH---HHHHHHHHcCCCchhHHHHHhhhc------CCCHHHHHHHHHHHh
Q 040255 300 QWAFGGDHLD--ASHIE---LTDKAIKYAQGVPLALKVLGCYLC------GRSKEVWESAMRKLE 353 (869)
Q Consensus 300 ~~af~~~~~~--~~~~~---~~~~i~~~~~GlPLal~~~g~~L~------~~~~~~w~~~l~~l~ 353 (869)
...++..... ..... -..+.++.....|++|.+.+..-. ....+-++.+++.+-
T Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 384 EDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 2222222111 00011 112223444778888887764332 234556666666543
No 383
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.63 E-value=0.051 Score=54.02 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=22.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++.|.|+.|+||||||+++...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988654
No 384
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.62 E-value=0.17 Score=52.35 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 160 IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 160 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..++.+.+....++..+|||.|+||.||+||..++...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444444444567899999999999999999988866543
No 385
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=93.60 E-value=0.041 Score=32.79 Aligned_cols=20 Identities=50% Similarity=1.034 Sum_probs=17.8
Q ss_pred cceeeecCCCcccccccccc
Q 040255 531 KLVSLKMPCTKVEQLWDDVQ 550 (869)
Q Consensus 531 ~L~~L~L~~n~l~~l~~~~~ 550 (869)
+|++|+|++++++++|+|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999863
No 386
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.60 E-value=0.072 Score=52.25 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=24.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4678999999999999999999987654
No 387
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.59 E-value=0.35 Score=53.02 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=38.3
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHH--hhcCc----cCceEEEEeehhhhccCCHHHHHH
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFN--KISRH----FEGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~----F~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
..|-++|..+=..-.++-|+|.+|+|||+|+..++- .+... -..++|+. ....+...++.+
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~tF~peRl~~ 179 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGTFRPDRIVP 179 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCCCCHHHHHH
Confidence 445555654334457888999999999999988764 22211 23578887 333445555544
No 388
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.54 E-value=0.3 Score=55.88 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=36.1
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 160 IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 160 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
+.++-++|..+=..-.++.|.|.+|+|||||+.+++.....+=..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666543334568999999999999999999987654434567765
No 389
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.53 E-value=0.049 Score=51.58 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.8
Q ss_pred EEEEecCCchHHHHHHHHHHhhcCc
Q 040255 177 LRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
|+|+|+.|+|||||++.+.+.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 7899999999999999999876544
No 390
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.50 E-value=0.26 Score=51.87 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=45.0
Q ss_pred EEEEEEecCCchHHHHH-HHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC-------CCCC---C----
Q 040255 175 CKLRIWGIGGISKITIA-GAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD-------GNMR---N---- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~-------~~~~---~---- 239 (869)
+.++|.|..|+|||+|| ..+.+.. +-+..+.+..+++- ...+.++.+++...-..+ ..+. .
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer--~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQK--ASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccc--hHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 45899999999999996 5566543 23455444444332 123445555554321100 0000 0
Q ss_pred ---HHHHHHHH--ccCceEEEecCC
Q 040255 240 ---IESQLNRL--ARKKVRIVFDDV 259 (869)
Q Consensus 240 ---~~~l~~~L--~~kr~LlVLDDv 259 (869)
.-.+.+++ +++.+|+++||+
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 12222333 578999999998
No 391
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.50 E-value=0.06 Score=53.19 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..|.|+|+.|.||||+|+.+.++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998754
No 392
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.50 E-value=0.049 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+|.|.|++|+||||+|+.+.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36789999999999999998863
No 393
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.35 Score=56.28 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=37.7
Q ss_pred cCCcceeccccHHHHHHhhc---cCC-------CCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 149 KNKGLVGVECSIEEIESLLC---IGS-------EGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
...+.-|.|+..+++.+.+. ... .-.+=|.++|++|.|||.||++++.+..-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 34668898888777766553 211 22345789999999999999999986543
No 394
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.48 E-value=0.27 Score=55.89 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=49.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC-ccCceEEEEeehhhhccCCHHHHHHHHHHHhh-cC------CCCCC-------
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLSELS-KD------GNMRN------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~-~~------~~~~~------- 239 (869)
..++|.|.+|+|||||+..+.+.... +-+.++++ .+++- ...+.++...+...-. .. ..+..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER--~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGER--SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcc--hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 46899999999999999998886653 34555554 33321 1233444444443211 00 00110
Q ss_pred ---HHHHHHHH---ccCceEEEecCCC
Q 040255 240 ---IESQLNRL---ARKKVRIVFDDVT 260 (869)
Q Consensus 240 ---~~~l~~~L---~~kr~LlVLDDv~ 260 (869)
.-.+.+++ .++++|+++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 22344555 3799999999993
No 395
>PRK15115 response regulator GlrR; Provisional
Probab=93.44 E-value=0.96 Score=52.08 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=34.4
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..++|....+.++.+....-...-..|.|.|.+|.|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888777766665543322333457799999999999999998843
No 396
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.44 E-value=0.37 Score=48.78 Aligned_cols=23 Identities=17% Similarity=-0.022 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 78999999999999999998763
No 397
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.42 E-value=0.031 Score=53.03 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=32.6
Q ss_pred eeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 154 VGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 154 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
||....++++.+.+..-......|.|+|..|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577777777777665433444567899999999999999999853
No 398
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.42 E-value=0.076 Score=52.11 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=24.0
Q ss_pred EEEEecCCchHHHHHHHHHHhhcC-ccCceEEE
Q 040255 177 LRIWGIGGISKITIAGAVFNKISR-HFEGSYFA 208 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~ 208 (869)
|.|.|.+|+|||||++.+++.++. .+...-|+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~ 34 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGFY 34 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceEE
Confidence 679999999999999999997754 34444444
No 399
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.38 E-value=0.28 Score=52.58 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999886643
No 400
>PRK13975 thymidylate kinase; Provisional
Probab=93.36 E-value=0.069 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=23.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..|.|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998764
No 401
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.36 E-value=0.051 Score=52.34 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHH
Q 040255 176 KLRIWGIGGISKITIAGAVF 195 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~ 195 (869)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 402
>PRK14530 adenylate kinase; Provisional
Probab=93.36 E-value=0.061 Score=55.28 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=21.2
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.|.|+|++|.||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.35 E-value=0.26 Score=56.47 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.-.+|+|+|.+|+||||++..+...+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34789999999999999999988765443
No 404
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.34 E-value=0.3 Score=55.14 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=49.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhh-cC------CCCCC--------
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELS-KD------GNMRN-------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~-~~------~~~~~-------- 239 (869)
..++|.|..|+|||||+..+......+...++-+..+++- ...+.++.+++...-. .. ..+..
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER--~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC--chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999888665443433333444432 1234455555543211 10 00000
Q ss_pred --HHHHHHHH---ccCceEEEecCCC
Q 040255 240 --IESQLNRL---ARKKVRIVFDDVT 260 (869)
Q Consensus 240 --~~~l~~~L---~~kr~LlVLDDv~ 260 (869)
.-.+.+++ +++.+|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchh
Confidence 22334555 4689999999994
No 405
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.33 E-value=0.083 Score=58.70 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=36.8
Q ss_pred cceeccccHHHHHHhhccC--------C----CCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 152 GLVGVECSIEEIESLLCIG--------S----EGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~--------~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
.++|.+..++.+...+... . ....-|.++|++|+||||||+++...+...|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 4778877777776655320 0 1135689999999999999999999765443
No 406
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.30 E-value=0.5 Score=50.11 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=35.8
Q ss_pred HHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 163 IESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 163 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
|-.+|..+-..-+++-|+|+.|.||||+|.+++-.....-..++|+.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 33444433355688899999999999999998876666666889987
No 407
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.28 E-value=0.29 Score=56.16 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=36.8
Q ss_pred cHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 159 SIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 159 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
-+.++-++|..+=..-.++.|.|.+|+|||||+.++...+...=..++|+.
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345666666544344578899999999999999999876654434566775
No 408
>PHA02244 ATPase-like protein
Probab=93.27 E-value=0.14 Score=55.96 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=32.3
Q ss_pred CCcceeccccHH----HHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 150 NKGLVGVECSIE----EIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 150 ~~~~vGr~~~~~----~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
+..++|....+. .+..++..+ .-|.|+|++|+|||+||+++++.....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345677555543 344444322 246789999999999999999976543
No 409
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.25 E-value=0.084 Score=51.04 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=27.0
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
++.|+|.+|.||||+|..+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999987665444566665
No 410
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.24 E-value=0.85 Score=55.14 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=37.2
Q ss_pred CCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 150 NKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+.++|....+.++.+.+..-...-..|.|+|..|+||+++|+++++.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568888888887777665433333447899999999999999999843
No 411
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.21 E-value=0.093 Score=60.59 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=27.6
Q ss_pred HhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 165 SLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 165 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+++....+++.+|+|.|..|.||||||+.+...+
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3444345678899999999999999999998764
No 412
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.17 E-value=0.069 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+.|.|+|+.|.||||+|+.+.+++.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578899999999999999999864
No 413
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.17 E-value=0.075 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..+|.|.|++|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 414
>PRK04182 cytidylate kinase; Provisional
Probab=93.11 E-value=0.074 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=22.0
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+|.|.|+.|.||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 415
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.95 E-value=0.61 Score=45.69 Aligned_cols=28 Identities=18% Similarity=-0.005 Sum_probs=22.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..+|-|++-.|.||||.|..++-+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~ 32 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGH 32 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHC
Confidence 3578888889999999999888765443
No 416
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.95 E-value=0.32 Score=51.55 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=53.2
Q ss_pred ecccc-HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhh-
Q 040255 155 GVECS-IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELS- 232 (869)
Q Consensus 155 Gr~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~- 232 (869)
|...+ ++.+..++. ..-.+|.|.|..|.||||+++++.+.+...-...+.+.+..+.. +..+ .++.
T Consensus 63 g~~~~~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~~~-----~q~~v 130 (264)
T cd01129 63 GLKPENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IPGI-----NQVQV 130 (264)
T ss_pred CCCHHHHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CCCc-----eEEEe
Confidence 44333 344444443 23457999999999999999999887654222334443322211 1000 0111
Q ss_pred cCCCCCC-HHHHHHHHccCceEEEecCCC
Q 040255 233 KDGNMRN-IESQLNRLARKKVRIVFDDVT 260 (869)
Q Consensus 233 ~~~~~~~-~~~l~~~L~~kr~LlVLDDv~ 260 (869)
......+ .+.++..|+..+=.|+++++.
T Consensus 131 ~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 131 NEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1111112 567778888888888999885
No 417
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.95 E-value=0.024 Score=58.04 Aligned_cols=56 Identities=21% Similarity=0.041 Sum_probs=27.4
Q ss_pred CCCCccEEEecCCCCCcccCcc--------ccccchhcccccccccC------CCCcCCccccceeccccc
Q 040255 558 TFKTPITFEIIDCKMLERLPDE--------LENLEYLTVKGTTIREL------PESLGRLSWVKRLILSNN 614 (869)
Q Consensus 558 ~l~~L~~L~L~~~~~l~~lp~~--------l~~L~~L~L~~n~i~~l------P~~i~~l~~L~~L~Ls~n 614 (869)
+-+.|++.....|+ +...|.. -.+|+.+.+..|.|..= -..+..+.+|+.|||.+|
T Consensus 155 ~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 155 DKPKLEVVICGRNR-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred cCCCceEEEeccch-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 34456666666555 4444433 12455555655555410 112234555666666555
No 418
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.94 E-value=0.42 Score=47.06 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=58.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCC---------CC-----H
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNM---------RN-----I 240 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~---------~~-----~ 240 (869)
.+++|.|..|.|||||.+.++..... ..+.+++.... .. ..........+ .-+.+...- .. .
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~-~~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LR-DLDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hh-hcCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHHH
Confidence 57899999999999999999885432 34555543210 00 00011110000 000000000 10 1
Q ss_pred HHHHHHHccCceEEEecCCC-------------------CCcEEEEEeCchhhhhhcCCCeEEEe
Q 040255 241 ESQLNRLARKKVRIVFDDVT-------------------SGSRVIITTRDKQVLKNCWANKKYRM 286 (869)
Q Consensus 241 ~~l~~~L~~kr~LlVLDDv~-------------------~gsrIivTTR~~~v~~~~~~~~~~~l 286 (869)
-.+.+.+..++-+++||+-. .+..||++|.+...... .++++.+
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 23445566788899999985 45678888888777654 4555554
No 419
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.92 E-value=0.098 Score=52.24 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=29.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.++|.|+|+.|+|||||++++..+....|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 36789999999999999999999988888544443
No 420
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.92 E-value=0.062 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEecCCchHHHHHHHHHHhhc
Q 040255 177 LRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
|.|+|++|+||||+|+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999998763
No 421
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.88 E-value=0.86 Score=48.36 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCC----C--CC---HHH
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGN----M--RN---IES 242 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~----~--~~---~~~ 242 (869)
.+..-++|+|..|.|||||.+.+...++.. .+.+++.. +.+.......++...+ ..+.+... . .+ ...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecchhHHHHHHHh-cccccccccccccccccchHHHH
Confidence 445789999999999999999999876543 33344321 0111000111222111 01111110 0 01 223
Q ss_pred HHHHHc-cCceEEEecCCC-------------CCcEEEEEeCchhhh
Q 040255 243 QLNRLA-RKKVRIVFDDVT-------------SGSRVIITTRDKQVL 275 (869)
Q Consensus 243 l~~~L~-~kr~LlVLDDv~-------------~gsrIivTTR~~~v~ 275 (869)
+...++ ..+=++++|.+. .|..+|+||-+..+.
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHH
Confidence 333333 678899999986 677888898876653
No 422
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.82 Score=55.68 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=65.6
Q ss_pred CcceeccccHHHHHHhhccC---C---CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHH
Q 040255 151 KGLVGVECSIEEIESLLCIG---S---EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~---~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
+.++|-++.+..|...+... . ...-.+.+.|+.|+|||-||++++.-+.+..+.-+=+. . ...+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-m---------se~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-M---------SEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-h---------hhhh
Confidence 45788888888887766531 1 14567788999999999999999998866655544443 2 2222
Q ss_pred HHHHHHhhcCCCCC----CHHHHHHHHccCce-EEEecCCC
Q 040255 225 KKLLSELSKDGNMR----NIESQLNRLARKKV-RIVFDDVT 260 (869)
Q Consensus 225 ~~il~~l~~~~~~~----~~~~l~~~L~~kr~-LlVLDDv~ 260 (869)
+ .+.+.+.++.. ....+.+.++.++| +|.||||+
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE 670 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE 670 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh
Confidence 2 33333332222 26678888888876 77889998
No 423
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.86 E-value=0.22 Score=56.00 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=46.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC-------CCCCC--------
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD-------GNMRN-------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~-------~~~~~-------- 239 (869)
..++|.|..|.|||||++.+...... +..++. .+++-. ..+.++.+.++..-... ..+..
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGER~--rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGERG--REVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcCCh--HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 56999999999999999998864333 444443 343321 12334444433321100 00000
Q ss_pred --HHHHHHHH--ccCceEEEecCCC
Q 040255 240 --IESQLNRL--ARKKVRIVFDDVT 260 (869)
Q Consensus 240 --~~~l~~~L--~~kr~LlVLDDv~ 260 (869)
.-.+.+++ +++++|+++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 22233444 5899999999983
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.83 E-value=0.44 Score=58.41 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=84.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHh-hcCccCceEEEEee------------hhhhccCCHHHHHHHHHHHhhcCCCCC
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNK-ISRHFEGSYFALNV------------REAEETGGIKDLQKKLLSELSKDGNMR 238 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~~~------------~~~s~~~~~~~l~~~il~~l~~~~~~~ 238 (869)
.+.+++.|.|+.+.||||+.+.+.-- +-. ...+++.+- .......++..-...+...
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~ma--q~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~-------- 394 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMA--KSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGH-------- 394 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHH--HhCCCcccCCCccccccceEEEecCCccchhhchhHHHHH--------
Confidence 34578899999999999999988642 111 111122210 0011111111111111111
Q ss_pred CHHHHHHHHc--cCceEEEecCCC---------------------CCcEEEEEeCchhhhhhcCCCe---EEEeCCCCHH
Q 040255 239 NIESQLNRLA--RKKVRIVFDDVT---------------------SGSRVIITTRDKQVLKNCWANK---KYRMKELVYA 292 (869)
Q Consensus 239 ~~~~l~~~L~--~kr~LlVLDDv~---------------------~gsrIivTTR~~~v~~~~~~~~---~~~l~~L~~~ 292 (869)
...+...++ ..+-|+++|..- .|+.+|+||....+........ .+.+.. +.
T Consensus 395 -m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d~- 471 (782)
T PRK00409 395 -MTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEF-DE- 471 (782)
T ss_pred -HHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-ec-
Confidence 112222222 477899999986 6889999999987765432211 122211 11
Q ss_pred HHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHHHHHh
Q 040255 293 DAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAMRKLE 353 (869)
Q Consensus 293 ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~ 353 (869)
+. +-..+-+....+.. .-+-+|++.+ |+|-.+..-|..+.+....+.+..+.+|.
T Consensus 472 ~~--l~~~Ykl~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 472 ET--LRPTYRLLIGIPGK---SNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred Cc--CcEEEEEeeCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 11 11111111222222 2355666655 89999888888887666666666666654
No 425
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.83 E-value=0.07 Score=53.03 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
++|+|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999854
No 426
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.81 E-value=0.83 Score=47.51 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=62.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc-------------c---CceEEEEeehhhhccC--CH----------------
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH-------------F---EGSYFALNVREAEETG--GI---------------- 220 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-------------F---~~~~~~~~~~~~s~~~--~~---------------- 220 (869)
.+++|+|+.|.|||||.+.+.--++.. . ..+.|+.--..+...+ .+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 689999999999999999998722211 1 1345554211111111 11
Q ss_pred ------HHHHHHHHHHhhcCCC---CC---C-----HHHHHHHHccCceEEEecCCC--------------------CCc
Q 040255 221 ------KDLQKKLLSELSKDGN---MR---N-----IESQLNRLARKKVRIVFDDVT--------------------SGS 263 (869)
Q Consensus 221 ------~~l~~~il~~l~~~~~---~~---~-----~~~l~~~L~~kr~LlVLDDv~--------------------~gs 263 (869)
.....+.+..++..+. .. . .-.+.+.|..++=|++||.-- .|.
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 1223344444442211 11 1 345567889999999999764 688
Q ss_pred EEEEEeCchhhhhh
Q 040255 264 RVIITTRDKQVLKN 277 (869)
Q Consensus 264 rIivTTR~~~v~~~ 277 (869)
-||+.|-|-.....
T Consensus 191 tIl~vtHDL~~v~~ 204 (254)
T COG1121 191 TVLMVTHDLGLVMA 204 (254)
T ss_pred EEEEEeCCcHHhHh
Confidence 99999998766544
No 427
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.81 E-value=0.4 Score=50.51 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=47.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc----CccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC-------CCCCC----
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS----RHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD-------GNMRN---- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~----~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~-------~~~~~---- 239 (869)
+.++|.|-.|+|||+|+..+.++.. .+-+.++++. +++- ...+.++.+++...-..+ .....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR--~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGIT--MEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-eccc--cHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 4589999999999999999887643 2234555554 3332 123444555444321100 00000
Q ss_pred ------HHHHHHHHc---cCceEEEecCC
Q 040255 240 ------IESQLNRLA---RKKVRIVFDDV 259 (869)
Q Consensus 240 ------~~~l~~~L~---~kr~LlVLDDv 259 (869)
.-.+.++++ ++++|+++||+
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 223344442 68999999998
No 428
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.80 E-value=0.085 Score=50.15 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.2
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcC
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
+|.|-|.+|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6889999999999999999997653
No 429
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.76 E-value=0.14 Score=54.66 Aligned_cols=54 Identities=24% Similarity=0.251 Sum_probs=40.3
Q ss_pred CcCCcceeccccHH---HHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 148 SKNKGLVGVECSIE---EIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 148 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...+.+||-.+..+ -+.++...+.-.-+.|.|+|++|.|||+||..+.+.+...
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34567888655433 3456666554445789999999999999999999988764
No 430
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.75 E-value=0.076 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.0
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
+++|+|+.|+|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999977654
No 431
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.74 E-value=0.17 Score=53.70 Aligned_cols=44 Identities=20% Similarity=0.083 Sum_probs=36.4
Q ss_pred hhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 166 LLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 166 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
+|..+=..-+++.|.|.+|.|||++|.++..+...+.+.++|++
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34333356689999999999999999999998877788899987
No 432
>PRK15453 phosphoribulokinase; Provisional
Probab=92.68 E-value=0.15 Score=53.77 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=24.2
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
....+|+|.|.+|.||||+|+++.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567899999999999999999987654
No 433
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.67 E-value=0.32 Score=57.06 Aligned_cols=50 Identities=20% Similarity=0.023 Sum_probs=37.8
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
...+.++|....+.++.+.+..-...-..|.|+|..|.||+++|++++..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34467999999888887766432222334779999999999999998764
No 434
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.56 E-value=0.12 Score=59.93 Aligned_cols=58 Identities=24% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCcceeccccHHHHHHhhcc---CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 150 NKGLVGVECSIEEIESLLCI---GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..+++--.+-++++..||.. +....+++.+.|++|+||||.++.+++++. |+..=|..
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 34455556678888888864 234467899999999999999999999763 56666653
No 435
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.54 E-value=0.13 Score=52.79 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=29.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEee
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNV 211 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 211 (869)
.....|.++||+|.||||..++++..+...+.. .++.|.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNL 55 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINL 55 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeC
Confidence 345577889999999999999999977766554 344444
No 436
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.51 E-value=0.29 Score=53.38 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=32.9
Q ss_pred HHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCchhhhhhcCCCeE
Q 040255 240 IESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDKQVLKNCWANKK 283 (869)
Q Consensus 240 ~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~~v~~~~~~~~~ 283 (869)
-..|...+..+.=+++.|... .|+..++.|+.+++......+..
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence 455667788888899999886 68888888888888777655443
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.50 E-value=0.084 Score=52.87 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++.|+|+.|.|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3688999999999999999977543
No 438
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.50 E-value=0.089 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.4
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 439
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.48 E-value=0.088 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
-.+|+|+|+.|+||||||+.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36799999999999999999998643
No 440
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.48 E-value=0.43 Score=52.53 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=28.2
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
...++++|+|+.|+||||++..++.....+-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34679999999999999999998876543323345554
No 441
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.47 E-value=0.13 Score=57.96 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=35.0
Q ss_pred cceeccccHHHHHHhhc-------cCC-------CCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 152 GLVGVECSIEEIESLLC-------IGS-------EGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~-------~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
.+||.+..++.+...+. ... -.-..|.++|++|+|||+||+.++..+...|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 47888877776643331 110 0125688999999999999999998764433
No 442
>PLN02348 phosphoribulokinase
Probab=92.47 E-value=0.16 Score=56.13 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 171 SEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.+...+|||.|.+|.||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999997754
No 443
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.46 E-value=0.13 Score=54.57 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=28.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
++|+|+|.+|+|||||+..+...++.+. .++-+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999887776 455554
No 444
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.46 E-value=0.13 Score=56.73 Aligned_cols=49 Identities=29% Similarity=0.247 Sum_probs=37.9
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccC
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFE 203 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 203 (869)
..++|.++.+..+...+..+ +-+.+.|.+|+|||+||+.++..+...|-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34889888877776655433 34789999999999999999998875543
No 445
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.44 E-value=0.23 Score=54.15 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=29.7
Q ss_pred HHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 162 EIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 162 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
++.+.+....+...+|+|.|.+|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443223567899999999999999999988876543
No 446
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.42 E-value=0.099 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
+-|.|.|.+|+||||+|.+++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 44889999999999999999974
No 447
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.41 E-value=0.11 Score=52.94 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=24.9
Q ss_pred hccCCCCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 167 LCIGSEGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 167 L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
+-.+....+.|.|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3334456788999999999999999999764
No 448
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.41 E-value=0.2 Score=53.13 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=28.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..-.++.|.|.+|+||||+|.+++.....+=+.++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34468899999999999999997665433334677776
No 449
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.41 E-value=0.12 Score=55.16 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+-|.++|+.|+|||++++...++..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 4578999999999999999887543
No 450
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.41 E-value=0.5 Score=51.52 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=28.9
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHH
Q 040255 160 IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 160 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
...|-.+|..+=..-.++.|+|.+|+||||||..++.
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 4556666654445567899999999999999998875
No 451
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.39 E-value=0.11 Score=56.17 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=43.3
Q ss_pred CCcceeccccHHHHHHhhccCC----CCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 150 NKGLVGVECSIEEIESLLCIGS----EGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~~----~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...++|+++.++++++.+...+ ..-+++-++|+.|.||||||+.+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 4579999999999999886532 456889999999999999999998865544
No 452
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.38 E-value=0.071 Score=54.75 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=54.5
Q ss_pred ccCCCCCccEEEecCCCCCcccCcc-------ccccchhcccccccccCC-CC-------------cCCccccceecccc
Q 040255 555 SLCTFKTPITFEIIDCKMLERLPDE-------LENLEYLTVKGTTIRELP-ES-------------LGRLSWVKRLILSN 613 (869)
Q Consensus 555 ~~~~l~~L~~L~L~~~~~l~~lp~~-------l~~L~~L~L~~n~i~~lP-~~-------------i~~l~~L~~L~Ls~ 613 (869)
.+-+++.|+..+||+|.+-...|+. -..|.+|.|++|.+..+. .- +.+-+.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4556666666666666644444443 345666666666655331 11 22345677777766
Q ss_pred cccccccCcc-----ccCCCCCCEEecCCCCCCcccCCC-----------CcccceeecccCC
Q 040255 614 NSNLERIPES-----IRHLSKLTFLFISHCERLQTLPEL-----------PCNLGLLSARNCT 660 (869)
Q Consensus 614 n~~l~~lP~~-----i~~L~~L~~L~L~~c~~l~~lp~~-----------~~~L~~L~l~~c~ 660 (869)
| .+..-|.. +..-..|+.+.+..|.. =|+. ..+|+.|++.+++
T Consensus 167 N-Rlengs~~~~a~~l~sh~~lk~vki~qNgI---rpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 167 N-RLENGSKELSAALLESHENLKEVKIQQNGI---RPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred c-hhccCcHHHHHHHHHhhcCceeEEeeecCc---CcchhHHHHHHHHHHhCcceeeeccccc
Confidence 6 55555532 22224566666665421 1221 2466666666654
No 453
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.37 E-value=0.19 Score=53.38 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=29.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCce
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGS 205 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 205 (869)
.+..+|.|.|.+|.|||||...+.+.+.......
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~ 135 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCA 135 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEE
Confidence 5689999999999999999999999887665333
No 454
>PLN02200 adenylate kinase family protein
Probab=92.35 E-value=0.11 Score=53.95 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=22.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...+|.|.|++|+||||+|+.+.++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998865
No 455
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.34 E-value=0.12 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.++||+|..|.||||||+.+.--
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 47999999999999999999863
No 456
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.33 E-value=0.14 Score=50.03 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.9
Q ss_pred EEEEecCCchHHHHHHHHHHh
Q 040255 177 LRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~ 197 (869)
|+|.|..|.|||||++.+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 457
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.32 E-value=0.26 Score=55.75 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=35.0
Q ss_pred ccccHHHHHHhhc-----cCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 156 VECSIEEIESLLC-----IGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 156 r~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
-.+-+.++..||. ...-+.+++.|.|++|+||||-.+.+...+.
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3455778888887 3445678999999999999999999988543
No 458
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.32 E-value=0.23 Score=56.04 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..++|+|..|.|||||++.+....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 569999999999999998887643
No 459
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.29 E-value=0.11 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.3
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+|+|.|+.|.||||+|+.+.++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 460
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.29 E-value=0.12 Score=55.34 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999998876554
No 461
>PRK14527 adenylate kinase; Provisional
Probab=92.26 E-value=0.11 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=23.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...+|.|+|++|.||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 462
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.22 E-value=0.44 Score=53.87 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=48.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc-CccCceEEEEeehhhhccCCHHHHHHHHHHHhh-cC------CCCCC-------
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS-RHFEGSYFALNVREAEETGGIKDLQKKLLSELS-KD------GNMRN------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~-~~------~~~~~------- 239 (869)
..++|.|.+|+|||+|+..+..... .+-+.++|.. +++- ...+.++.+++...-. .. ..+..
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~-iGeR--~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG-IGER--CREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE-eccC--cHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4689999999999999999887554 2335666653 3321 1233444444443211 10 00000
Q ss_pred ---HHHHHHHHc---cCceEEEecCCC
Q 040255 240 ---IESQLNRLA---RKKVRIVFDDVT 260 (869)
Q Consensus 240 ---~~~l~~~L~---~kr~LlVLDDv~ 260 (869)
.-.+.++++ ++++|+++||+-
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChH
Confidence 233445554 589999999994
No 463
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.21 E-value=0.19 Score=59.87 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=43.1
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-cCceEEEEee
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-FEGSYFALNV 211 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~ 211 (869)
+.++|.++.++.+...+... +-+.++|++|+||||+|+++.+.+... |...+++.+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 56889988888887777543 255599999999999999999987654 4555566543
No 464
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.19 E-value=4.6 Score=47.19 Aligned_cols=234 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHhhhhceeeeeeccccccccc-------eEeeeccccccccccchhHHhHHHHhcch------hhHHhHHHHHHH
Q 040255 46 QSLLGTIEASCIAIIIFSERYASSRW-------FFYRVDPSHVRKQSHSFGRHFSRLRKRFP------EKMKRWKNALTE 112 (869)
Q Consensus 46 ~~l~~ai~~s~~~ivv~S~~ya~s~w-------vfy~vdp~~vr~q~g~~~~~~~~~~~~~~------~~i~~wr~al~~ 112 (869)
..|..-+..-+-+|+|+|.+ ++ .-+++|.-.++.-.|.|......-+.+.. ++.++-.+.+.+
T Consensus 190 ~WLe~~L~~~~gtviiVSHD----R~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 265 (530)
T COG0488 190 EWLEDYLKRYPGTVIVVSHD----RYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQE 265 (530)
T ss_pred HHHHHHHHhCCCcEEEEeCC----HHHHHHHhhheEEecCCceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhcCCCcccccchhhhHhHHHHHHHhhccccccCcCCcce-----------------------eccccHHHHHHhhcc
Q 040255 113 AADLSGFDSNVIRPESKLIEEIANDVLKRLDATFQSKNKGLV-----------------------GVECSIEEIESLLCI 169 (869)
Q Consensus 113 ~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~v-----------------------Gr~~~~~~l~~~L~~ 169 (869)
-.+....... ....++...+..+.+........+....... |.+.. ..|.+-+..
T Consensus 266 ~i~r~~~~~~-~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~ 343 (530)
T COG0488 266 WIRRGKAAAS-KAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSF 343 (530)
T ss_pred HHHHHHhccc-hHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceE
Q ss_pred CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE-----------------------eehhhhccCCHHHHHHH
Q 040255 170 GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL-----------------------NVREAEETGGIKDLQKK 226 (869)
Q Consensus 170 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-----------------------~~~~~s~~~~~~~l~~~ 226 (869)
.-..-..|+|+|+-|+|||||.+.+....... .+.+-+. .+++...... ..-.+.
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~-e~~~r~ 421 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD-EQEVRA 421 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc-HHHHHH
Q ss_pred HHHHhhcCCCCCC------------HHHHHHHHccCceEEEecCCC-----------------CCcEEEEEeCchhhhhh
Q 040255 227 LLSELSKDGNMRN------------IESQLNRLARKKVRIVFDDVT-----------------SGSRVIITTRDKQVLKN 277 (869)
Q Consensus 227 il~~l~~~~~~~~------------~~~l~~~L~~kr~LlVLDDv~-----------------~gsrIivTTR~~~v~~~ 277 (869)
.+..++-...... .-.+...+..++=+||||.=- =.+.||+.|-|+.....
T Consensus 422 ~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred HHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Q ss_pred cCCCeEEEeCC
Q 040255 278 CWANKKYRMKE 288 (869)
Q Consensus 278 ~~~~~~~~l~~ 288 (869)
. +.+++.+++
T Consensus 502 v-a~~i~~~~~ 511 (530)
T COG0488 502 V-ATRIWLVED 511 (530)
T ss_pred h-cceEEEEcC
No 465
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.17 E-value=0.099 Score=45.47 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcC
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
++.+.|.+|+||||+|..+...++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999997754
No 466
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.15 E-value=0.25 Score=51.61 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=34.9
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..|-++|..+=..-.++.|.|.+|.|||++|.++.......=+.++|++
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455555544455678999999999999999987664334456677776
No 467
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.11 E-value=0.17 Score=59.62 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=35.7
Q ss_pred cceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 152 GLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..+-|.+-.+.|.+........-.+|.|+|+.|.||||+|++++.++..
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3455555555555555444444558899999999999999999998764
No 468
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.08 E-value=0.16 Score=53.33 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=31.9
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.++...+....++..+|||.|.||+||+||..++-.++..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 34555555556778899999999999999999988866443
No 469
>PRK06761 hypothetical protein; Provisional
Probab=92.07 E-value=0.12 Score=54.86 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
++|.|.|++|.||||+|+.+++++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 578999999999999999999987643
No 470
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.01 E-value=0.19 Score=51.30 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.2
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 171 SEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++++|+++|..|.|||||..++.++...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 357999999999999999999999887543
No 471
>PRK13695 putative NTPase; Provisional
Probab=91.99 E-value=0.15 Score=50.47 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=24.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcC-ccCceEEE
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISR-HFEGSYFA 208 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~ 208 (869)
.|+|.|.+|+|||||++.+++.+.. .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3789999999999999999987653 34433343
No 472
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.94 E-value=0.21 Score=50.64 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=21.6
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.|+|+|-||+||||+|..+..++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977655443
No 473
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.93 E-value=0.23 Score=53.91 Aligned_cols=58 Identities=24% Similarity=0.214 Sum_probs=38.5
Q ss_pred cCCcceeccccHHH---HHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceE
Q 040255 149 KNKGLVGVECSIEE---IESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSY 206 (869)
Q Consensus 149 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~ 206 (869)
....+||..+..+. +.+++..+.-.-+.|.|.|++|.|||+||.++.+.+....+.+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 35679997665443 35555544333478889999999999999999999987655443
No 474
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.92 E-value=0.12 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEecCCchHHHHHHHHHHhh
Q 040255 177 LRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~ 198 (869)
|.|.|++|+||||+|+.+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998874
No 475
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.90 E-value=0.28 Score=50.86 Aligned_cols=48 Identities=17% Similarity=0.039 Sum_probs=33.2
Q ss_pred HHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 162 EIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 162 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.|-++|..+=..-..+.|.|.+|.||||||.++.......-+.++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 444445333344578999999999999999987664433445677776
No 476
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.90 E-value=0.13 Score=47.06 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=19.3
Q ss_pred EEEEecCCchHHHHHHHHHHh
Q 040255 177 LRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~ 197 (869)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999873
No 477
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.89 E-value=0.17 Score=52.82 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=21.7
Q ss_pred EEecCCchHHHHHHHHHHhhcCccCceEEEEeeh
Q 040255 179 IWGIGGISKITIAGAVFNKISRHFEGSYFALNVR 212 (869)
Q Consensus 179 I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~ 212 (869)
|+||+|.||||+++.+.+-+..+-. .+.+.|..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~-~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGR-DVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S--EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC-CceEEEcc
Confidence 6899999999999999996655432 33333443
No 478
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.88 E-value=0.45 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..++|.|..|.|||||.+.+.....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC
Confidence 5689999999999999999887554
No 479
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.87 E-value=1.8 Score=43.07 Aligned_cols=37 Identities=16% Similarity=-0.101 Sum_probs=26.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
....|-|+|-.|-||||.|..+.-+...+=-.+..+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3467899999999999999988876544323334444
No 480
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.85 E-value=1.2 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
..|+|+|..|.||||||+.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999876
No 481
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.85 E-value=0.17 Score=50.49 Aligned_cols=33 Identities=18% Similarity=0.019 Sum_probs=25.4
Q ss_pred EEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 177 LRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
+.|.|.+|+|||+||.++.......=..++|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999998775443335566765
No 482
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.83 E-value=0.13 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHH
Q 040255 174 VCKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
..+|||+|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 483
>PRK13768 GTPase; Provisional
Probab=91.82 E-value=0.2 Score=52.84 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.++.|.|+||+||||+|..+...++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh
Confidence 57889999999999999998876544
No 484
>PRK14532 adenylate kinase; Provisional
Probab=91.80 E-value=0.12 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=20.0
Q ss_pred EEEEecCCchHHHHHHHHHHhh
Q 040255 177 LRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~ 198 (869)
|.|.|++|.||||+|+.++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 485
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=91.78 E-value=0.13 Score=51.46 Aligned_cols=21 Identities=24% Similarity=-0.140 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 040255 176 KLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~ 196 (869)
++.|.|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999884
No 486
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.76 E-value=0.13 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHhh
Q 040255 177 LRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~ 198 (869)
|.|.|++|+||||+|+.+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 487
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.73 E-value=0.14 Score=49.42 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=28.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.++++|+|.-|.|||||..++..+++.+--.++-+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 46899999999999999999999876654344444
No 488
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.71 E-value=0.16 Score=49.05 Aligned_cols=32 Identities=25% Similarity=0.147 Sum_probs=26.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEG 204 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 204 (869)
...+|-..|.+|.||||||.++++++..+--.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~ 53 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYH 53 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCe
Confidence 45688899999999999999999987665433
No 489
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.64 E-value=0.33 Score=48.82 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.5
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcC
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
+|.|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999997753
No 490
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.63 E-value=0.46 Score=52.00 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc------CceEEEEeehhhhccCCHHHHHH
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF------EGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
..+..+|..+=..-.++-|+|.+|+|||++|.+++-...... ..++|+. ....+...++.+
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~----te~~f~~~rl~~ 155 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID----TEGTFRPERIEQ 155 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe----CCCCcCHHHHHH
Confidence 445555543334457888999999999999999886543211 3677887 333344555443
No 491
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.60 E-value=1.4 Score=46.99 Aligned_cols=52 Identities=10% Similarity=-0.076 Sum_probs=34.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCc-cCceEEEEeehhhhccCCHHHHHHHHHHHh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKKLLSEL 231 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~il~~l 231 (869)
-.++.|.|.+|+||||+|.+++.....+ =..++|++. ......+...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~------E~~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL------EEPVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc------ccCHHHHHHHHHHHH
Confidence 3578899999999999999988866444 345667652 123345555554443
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.52 E-value=0.15 Score=45.56 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.9
Q ss_pred eEEEEEEecCCchHHHHHHHHH
Q 040255 174 VCKLRIWGIGGISKITIAGAVF 195 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~ 195 (869)
-..++|.|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999976
No 493
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.52 E-value=1 Score=48.73 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.1
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHH
Q 040255 171 SEGVCKLRIWGIGGISKITIAGAVF 195 (869)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLA~~v~ 195 (869)
.+++..|.+.|.+|.|||.||-+..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHH
Confidence 3678999999999999998886543
No 494
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=1.8 Score=48.50 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..++-+.+.|++|.|||.||++|+-+....
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcce
Confidence 345667789999999999999999876544
No 495
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.48 E-value=0.9 Score=44.60 Aligned_cols=76 Identities=9% Similarity=0.017 Sum_probs=43.6
Q ss_pred EEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC--CCCC--CHHHHHHHHcc--C
Q 040255 177 LRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD--GNMR--NIESQLNRLAR--K 250 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~--~~~~--~~~~l~~~L~~--k 250 (869)
+.|.|.+|.|||++|.++... .-...+++.. ....+. .+++.+....... .... ....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at----~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT----AEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc----cCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 678999999999999998765 2245666652 222333 3444443332222 2222 14455555532 2
Q ss_pred ceEEEecCCC
Q 040255 251 KVRIVFDDVT 260 (869)
Q Consensus 251 r~LlVLDDv~ 260 (869)
.-.+++|.+.
T Consensus 74 ~~~VLIDclt 83 (169)
T cd00544 74 GDVVLIDCLT 83 (169)
T ss_pred CCEEEEEcHh
Confidence 3478899874
No 496
>PRK14531 adenylate kinase; Provisional
Probab=91.48 E-value=0.16 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.|.|+|++|.||||+|+.+.+++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 497
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.47 E-value=0.24 Score=48.15 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=24.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999977654
No 498
>PRK08149 ATP synthase SpaL; Validated
Probab=91.45 E-value=0.34 Score=54.58 Aligned_cols=82 Identities=11% Similarity=0.201 Sum_probs=46.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC--------CCCCC------
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD--------GNMRN------ 239 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~--------~~~~~------ 239 (869)
-..++|+|..|.|||||+..++..... +..++ ..+.. ....+..+..+.+...... .....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~-g~Ig~--rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA--DVFVI-GLIGE--RGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC--CeEEE-EEEee--CCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 356899999999999999988874322 22222 22221 1234445555554432110 00100
Q ss_pred ---HHHHHHHH--ccCceEEEecCCC
Q 040255 240 ---IESQLNRL--ARKKVRIVFDDVT 260 (869)
Q Consensus 240 ---~~~l~~~L--~~kr~LlVLDDv~ 260 (869)
.-.+.+++ ++|.+||++||+-
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchH
Confidence 22233344 5899999999994
No 499
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.44 E-value=0.15 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+++|+|..|.||||||+.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998654
No 500
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.43 E-value=1 Score=50.35 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999998887654
Done!