Query 040255
Match_columns 869
No_of_seqs 783 out of 6026
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 10:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.8E-40 9.6E-45 387.5 25.2 272 154-431 131-472 (549)
2 3jrn_A AT1G72930 protein; TIR 100.0 3.1E-40 1E-44 318.7 7.3 145 1-147 8-175 (176)
3 3ozi_A L6TR; plant TIR domain, 100.0 1.5E-39 5E-44 318.3 9.2 144 1-144 35-202 (204)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-34 7.1E-39 371.7 24.0 279 146-430 119-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 1.2E-34 4E-39 343.6 17.0 252 151-423 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 4.2E-32 1.4E-36 322.4 23.8 312 145-467 118-507 (591)
7 3h16_A TIR protein; bacteria T 99.8 2.3E-22 7.7E-27 193.7 3.3 95 1-96 20-136 (154)
8 4fcg_A Uncharacterized protein 99.8 6.1E-21 2.1E-25 208.8 13.7 188 485-682 81-286 (328)
9 4fcg_A Uncharacterized protein 99.8 1.4E-20 4.8E-25 205.9 13.6 212 458-682 81-310 (328)
10 1ogq_A PGIP-2, polygalacturona 99.8 9E-20 3.1E-24 198.2 11.6 248 458-722 50-310 (313)
11 3rgz_A Protein brassinosteroid 99.8 2.6E-19 9E-24 218.7 15.2 136 478-621 411-555 (768)
12 3rgz_A Protein brassinosteroid 99.8 3.3E-19 1.1E-23 217.8 15.6 230 484-729 393-704 (768)
13 2id5_A Lingo-1, leucine rich r 99.7 8.7E-18 3E-22 193.7 14.9 197 475-682 46-257 (477)
14 3zyj_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 186.2 18.8 215 459-687 65-293 (440)
15 4eco_A Uncharacterized protein 99.7 4E-18 1.4E-22 203.6 10.8 172 500-683 198-412 (636)
16 3zyi_A Leucine-rich repeat-con 99.7 4.8E-17 1.7E-21 186.2 19.2 215 459-687 76-304 (452)
17 2id5_A Lingo-1, leucine rich r 99.7 3.7E-17 1.2E-21 188.5 17.6 239 458-715 56-332 (477)
18 4eco_A Uncharacterized protein 99.7 4.3E-18 1.5E-22 203.2 9.9 189 483-682 247-466 (636)
19 1xku_A Decorin; proteoglycan, 99.7 5.8E-17 2E-21 177.3 17.3 210 459-684 53-274 (330)
20 1ogq_A PGIP-2, polygalacturona 99.7 9E-18 3.1E-22 182.4 9.9 200 475-685 91-303 (313)
21 2ft3_A Biglycan; proteoglycan, 99.7 7.1E-17 2.4E-21 176.8 17.1 208 459-684 55-275 (332)
22 4ecn_A Leucine-rich repeat pro 99.7 3E-17 1E-21 200.0 15.5 230 480-725 568-825 (876)
23 3v47_A TOLL-like receptor 5B a 99.7 7.9E-17 2.7E-21 184.4 17.5 252 459-729 31-371 (455)
24 3v47_A TOLL-like receptor 5B a 99.7 8.9E-17 3E-21 184.0 17.7 100 582-682 276-380 (455)
25 4ecn_A Leucine-rich repeat pro 99.7 4.1E-17 1.4E-21 198.8 15.2 200 478-683 441-683 (876)
26 1xku_A Decorin; proteoglycan, 99.7 1.1E-16 3.6E-21 175.3 16.7 225 483-729 29-263 (330)
27 2z66_A Variable lymphocyte rec 99.7 6.3E-17 2.1E-21 175.1 14.0 202 475-685 42-260 (306)
28 3t6q_A CD180 antigen; protein- 99.7 1.4E-16 4.7E-21 189.4 17.2 258 459-740 255-532 (606)
29 1p9a_G Platelet glycoprotein I 99.7 3E-16 1E-20 168.3 17.6 192 480-687 5-209 (290)
30 2ft3_A Biglycan; proteoglycan, 99.7 5.3E-16 1.8E-20 169.9 19.1 212 458-685 78-306 (332)
31 3g06_A SSPH2 (leucine-rich rep 99.7 3.7E-16 1.3E-20 184.4 18.1 184 483-684 99-295 (622)
32 3ub2_A TOLL/interleukin-1 rece 99.7 2.4E-18 8E-23 163.0 -0.8 108 1-110 10-145 (146)
33 3zyi_A Leucine-rich repeat-con 99.7 4.4E-16 1.5E-20 178.2 17.4 220 485-721 75-308 (452)
34 2z80_A TOLL-like receptor 2, v 99.7 1.3E-16 4.5E-21 176.3 12.6 171 459-642 53-236 (353)
35 2z66_A Variable lymphocyte rec 99.7 1.8E-16 6E-21 171.5 13.2 213 485-715 28-260 (306)
36 3zyj_A Leucine-rich repeat-con 99.7 5E-16 1.7E-20 177.1 17.5 220 485-721 64-297 (440)
37 3o6n_A APL1; leucine-rich repe 99.7 9.1E-16 3.1E-20 172.0 19.0 195 475-683 83-305 (390)
38 3t6q_A CD180 antigen; protein- 99.7 3.7E-16 1.3E-20 185.7 16.3 129 580-715 277-412 (606)
39 1ozn_A Reticulon 4 receptor; N 99.7 5.8E-16 2E-20 165.6 16.2 192 484-686 31-238 (285)
40 3vq2_A TLR4, TOLL-like recepto 99.7 1.6E-16 5.6E-21 188.7 13.2 230 480-727 302-542 (606)
41 3g06_A SSPH2 (leucine-rich rep 99.7 7.6E-16 2.6E-20 181.7 18.6 212 485-730 61-285 (622)
42 2z7x_B TOLL-like receptor 1, v 99.7 3.1E-16 1.1E-20 182.7 14.8 124 459-593 22-150 (520)
43 1ozn_A Reticulon 4 receptor; N 99.7 7.1E-16 2.4E-20 165.0 16.0 210 488-715 14-237 (285)
44 3j0a_A TOLL-like receptor 5; m 99.7 5.4E-16 1.9E-20 191.3 17.3 132 475-614 38-184 (844)
45 3oja_B Anopheles plasmodium-re 99.7 1.1E-15 3.7E-20 181.2 19.0 195 475-683 89-311 (597)
46 2z81_A CD282 antigen, TOLL-lik 99.7 5.3E-16 1.8E-20 182.0 15.2 170 459-639 27-207 (549)
47 4fmz_A Internalin; leucine ric 99.6 7.5E-16 2.5E-20 169.7 15.3 212 480-715 105-323 (347)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.2E-15 3.9E-20 179.8 17.6 137 580-729 352-497 (562)
49 3o6n_A APL1; leucine-rich repe 99.6 4.7E-16 1.6E-20 174.3 13.5 214 459-684 94-329 (390)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.6E-15 5.3E-20 178.6 18.6 103 459-571 53-157 (562)
51 4fmz_A Internalin; leucine ric 99.6 3E-15 1E-19 164.8 19.4 211 480-715 61-277 (347)
52 1h6u_A Internalin H; cell adhe 99.6 5.9E-16 2E-20 167.6 13.1 185 481-683 37-227 (308)
53 3oja_A Leucine-rich immune mol 99.6 1.4E-16 4.7E-21 183.8 8.2 207 458-685 34-249 (487)
54 3o53_A Protein LRIM1, AGAP0063 99.6 8.2E-17 2.8E-21 175.2 5.4 207 458-685 34-249 (317)
55 3oja_B Anopheles plasmodium-re 99.6 1.2E-15 4E-20 181.0 15.8 230 474-729 64-324 (597)
56 3oja_A Leucine-rich immune mol 99.6 8.6E-16 2.9E-20 177.1 13.3 220 483-727 32-260 (487)
57 3o53_A Protein LRIM1, AGAP0063 99.6 7.9E-16 2.7E-20 167.3 12.2 225 478-727 27-260 (317)
58 3rfs_A Internalin B, repeat mo 99.6 1.9E-15 6.3E-20 160.6 14.6 169 481-660 37-216 (272)
59 2z7x_B TOLL-like receptor 1, v 99.6 1.9E-15 6.6E-20 176.0 16.0 79 458-543 45-128 (520)
60 3j0a_A TOLL-like receptor 5; m 99.6 5.1E-15 1.7E-19 182.6 20.4 143 465-614 53-214 (844)
61 2o6q_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 155.7 18.7 187 485-685 16-217 (270)
62 1jl5_A Outer protein YOPM; leu 99.6 4.4E-15 1.5E-19 169.6 17.9 236 459-728 132-382 (454)
63 1wwl_A Monocyte differentiatio 99.6 9.8E-16 3.4E-20 166.2 11.0 190 483-684 93-307 (312)
64 3vq2_A TLR4, TOLL-like recepto 99.6 1.5E-15 5.2E-20 180.4 12.9 229 481-730 281-522 (606)
65 4ay9_X Follicle-stimulating ho 99.6 3.1E-15 1.1E-19 165.0 14.3 212 459-682 31-255 (350)
66 3rfs_A Internalin B, repeat mo 99.6 4.3E-15 1.5E-19 157.8 14.6 178 480-672 58-245 (272)
67 2z62_A TOLL-like receptor 4, v 99.6 4.6E-15 1.6E-19 157.8 14.9 190 485-686 28-237 (276)
68 3cvr_A Invasion plasmid antige 99.6 2.9E-15 9.7E-20 174.6 14.1 175 486-684 60-241 (571)
69 1o6v_A Internalin A; bacterial 99.6 5.7E-15 2E-19 169.6 16.4 192 481-683 86-297 (466)
70 1o6v_A Internalin A; bacterial 99.6 6.6E-15 2.2E-19 169.1 16.6 158 511-682 200-362 (466)
71 2z80_A TOLL-like receptor 2, v 99.6 5.4E-16 1.8E-20 171.4 7.0 236 485-740 52-310 (353)
72 2z63_A TOLL-like receptor 4, v 99.6 2.1E-15 7.2E-20 177.7 12.4 221 476-715 273-506 (570)
73 2xwt_C Thyrotropin receptor; s 99.6 3.4E-15 1.2E-19 155.3 12.4 184 486-682 32-235 (239)
74 2xwt_C Thyrotropin receptor; s 99.6 3E-15 1E-19 155.7 11.8 189 459-661 32-238 (239)
75 4g8a_A TOLL-like receptor 4; l 99.6 9.4E-15 3.2E-19 174.1 17.1 102 459-571 53-159 (635)
76 1ziw_A TOLL-like receptor 3; i 99.6 1.2E-14 4E-19 175.2 18.0 199 475-682 63-305 (680)
77 3bz5_A Internalin-J, INLJ; leu 99.6 1E-14 3.5E-19 166.7 16.5 182 480-684 59-244 (457)
78 2z62_A TOLL-like receptor 4, v 99.6 9.9E-15 3.4E-19 155.2 15.3 200 496-715 18-236 (276)
79 3bz5_A Internalin-J, INLJ; leu 99.6 1.2E-14 4E-19 166.2 16.9 197 458-682 64-263 (457)
80 4glp_A Monocyte differentiatio 99.6 2.3E-15 7.9E-20 163.1 10.1 190 483-684 89-305 (310)
81 1ziw_A TOLL-like receptor 3; i 99.6 9.8E-15 3.3E-19 175.9 16.5 214 459-684 26-283 (680)
82 2z63_A TOLL-like receptor 4, v 99.6 3.9E-15 1.3E-19 175.4 12.7 222 478-715 298-530 (570)
83 1h6u_A Internalin H; cell adhe 99.6 9.4E-15 3.2E-19 158.1 14.7 187 459-667 42-234 (308)
84 1jl5_A Outer protein YOPM; leu 99.6 2.7E-14 9.2E-19 163.0 18.6 177 485-683 131-307 (454)
85 1p9a_G Platelet glycoprotein I 99.6 2.1E-14 7E-19 154.0 15.3 164 485-660 31-206 (290)
86 2z81_A CD282 antigen, TOLL-lik 99.6 4.1E-15 1.4E-19 174.4 10.6 165 552-732 325-500 (549)
87 2o6q_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 152.0 14.9 165 485-660 37-216 (270)
88 3m19_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 146.8 15.8 166 486-685 15-191 (251)
89 1fyx_A TOLL-like receptor 2; b 99.5 1.6E-15 5.6E-20 144.5 2.9 69 1-71 5-77 (149)
90 1h6t_A Internalin B; cell adhe 99.5 2.2E-14 7.7E-19 153.8 12.0 163 481-659 42-210 (291)
91 2ast_B S-phase kinase-associat 99.5 2.7E-15 9.3E-20 164.3 4.7 233 477-728 60-316 (336)
92 1wwl_A Monocyte differentiatio 99.5 7.3E-15 2.5E-19 159.3 7.4 191 458-660 95-307 (312)
93 2qen_A Walker-type ATPase; unk 99.5 5.5E-13 1.9E-17 146.6 22.4 256 146-423 7-348 (350)
94 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 144.8 15.8 145 561-715 36-191 (251)
95 4glp_A Monocyte differentiatio 99.5 1.8E-14 6E-19 156.2 8.3 189 459-660 92-305 (310)
96 2fna_A Conserved hypothetical 99.5 1.6E-12 5.5E-17 143.2 24.0 256 146-423 8-356 (357)
97 4g8a_A TOLL-like receptor 4; l 99.5 1.2E-13 4E-18 164.6 15.8 137 582-728 421-565 (635)
98 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 140.6 13.0 170 489-674 11-190 (208)
99 2js7_A Myeloid differentiation 99.5 4.5E-15 1.6E-19 142.9 2.2 69 1-71 16-88 (160)
100 1m9s_A Internalin B; cell inva 99.5 6E-14 2.1E-18 165.2 11.8 162 482-659 40-207 (605)
101 1t3g_A X-linked interleukin-1 99.5 7.8E-15 2.7E-19 141.0 3.3 71 1-71 2-85 (159)
102 2j67_A TOLL like receptor 10; 99.5 7.5E-15 2.6E-19 143.5 3.1 69 1-71 35-107 (178)
103 4ezg_A Putative uncharacterize 99.5 5.2E-14 1.8E-18 141.7 8.6 146 482-639 41-192 (197)
104 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.9E-18 147.5 12.1 159 510-683 46-210 (291)
105 1w5s_A Origin recognition comp 99.5 1.1E-12 3.9E-17 147.7 19.3 224 150-386 21-321 (412)
106 3cvr_A Invasion plasmid antige 99.4 1.3E-13 4.4E-18 160.7 10.8 184 459-672 60-253 (571)
107 2ca6_A RAN GTPase-activating p 99.4 6.6E-15 2.2E-19 164.7 -0.6 199 481-684 56-314 (386)
108 4ezg_A Putative uncharacterize 99.4 2.5E-13 8.5E-18 136.7 10.4 145 528-684 42-192 (197)
109 1m9s_A Internalin B; cell inva 99.4 5E-13 1.7E-17 157.4 13.5 163 459-641 44-210 (605)
110 2ca6_A RAN GTPase-activating p 99.4 1.8E-14 6.1E-19 161.2 -0.3 230 478-715 25-315 (386)
111 3e6j_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 135.1 13.0 140 488-639 22-170 (229)
112 3e6j_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 133.7 13.7 124 513-645 22-151 (229)
113 2v9t_B SLIT homolog 2 protein 99.4 1.4E-12 4.9E-17 133.6 12.8 139 489-639 15-163 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.4 1.7E-12 5.8E-17 133.0 13.0 141 488-640 14-165 (220)
115 4ay9_X Follicle-stimulating ho 99.4 1.2E-12 4.1E-17 144.3 11.7 185 485-680 30-233 (350)
116 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 132.7 10.2 161 484-661 27-197 (208)
117 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.7E-17 138.4 9.7 144 480-659 36-182 (263)
118 1xeu_A Internalin C; cellular 99.4 1.1E-12 3.8E-17 138.3 9.8 157 511-683 20-182 (263)
119 4b8c_D Glucose-repressible alc 99.4 1.8E-13 6.3E-18 165.0 4.0 110 528-646 222-334 (727)
120 2xot_A Amphoterin-induced prot 99.4 2E-12 6.8E-17 143.1 12.0 145 488-645 21-179 (361)
121 1dce_A Protein (RAB geranylger 99.3 1.9E-14 6.6E-19 168.4 -5.5 97 582-682 442-542 (567)
122 3goz_A Leucine-rich repeat-con 99.3 1.3E-13 4.5E-18 152.7 1.2 200 479-684 44-295 (362)
123 2ast_B S-phase kinase-associat 99.3 1.4E-13 4.9E-18 150.5 0.6 216 486-713 48-282 (336)
124 2qby_B CDC6 homolog 3, cell di 99.3 1.3E-10 4.3E-15 129.6 24.2 220 151-384 20-295 (384)
125 2xot_A Amphoterin-induced prot 99.3 2.8E-12 9.4E-17 142.0 10.4 167 513-689 21-205 (361)
126 3goz_A Leucine-rich repeat-con 99.3 1.3E-13 4.4E-18 152.8 -0.5 231 478-715 15-296 (362)
127 1dce_A Protein (RAB geranylger 99.3 4.9E-14 1.7E-18 164.9 -5.1 187 482-680 346-567 (567)
128 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 126.5 13.2 124 560-686 32-165 (220)
129 2v70_A SLIT-2, SLIT homolog 2 99.3 1.4E-11 4.8E-16 126.1 13.5 142 533-686 14-166 (220)
130 2v1u_A Cell division control p 99.3 1.9E-10 6.5E-15 128.1 23.0 290 150-457 18-383 (387)
131 2qby_A CDC6 homolog 1, cell di 99.3 6.5E-11 2.2E-15 131.8 18.7 227 149-386 18-299 (386)
132 4b8c_D Glucose-repressible alc 99.3 7.5E-13 2.6E-17 159.7 2.8 146 501-659 217-369 (727)
133 2ell_A Acidic leucine-rich nuc 99.3 8.1E-12 2.8E-16 122.0 9.5 126 511-646 25-164 (168)
134 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4.1E-16 121.9 8.6 99 531-639 43-151 (176)
135 2ell_A Acidic leucine-rich nuc 99.2 8.5E-12 2.9E-16 121.8 6.8 132 483-624 22-166 (168)
136 1z7x_W Ribonuclease inhibitor; 99.2 7.7E-13 2.6E-17 151.3 -1.4 243 478-729 106-398 (461)
137 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 117.9 6.5 98 530-636 42-148 (149)
138 2wfh_A SLIT homolog 2 protein 99.2 5.9E-11 2E-15 118.8 11.0 100 531-639 32-137 (193)
139 1z7x_W Ribonuclease inhibitor; 99.1 1.7E-12 5.8E-17 148.5 -2.8 199 479-683 50-294 (461)
140 2je0_A Acidic leucine-rich nuc 99.1 2.9E-11 1E-15 115.4 6.3 121 529-657 16-148 (149)
141 1w8a_A SLIT protein; signaling 99.1 1.2E-10 4.2E-15 116.3 10.8 122 563-686 11-139 (192)
142 2o6r_A Variable lymphocyte rec 99.1 1.5E-10 5.1E-15 114.0 11.1 104 530-641 28-137 (177)
143 1a9n_A U2A', U2A'; complex (nu 99.1 7.2E-11 2.5E-15 116.2 8.2 75 561-637 43-122 (176)
144 1w8a_A SLIT protein; signaling 99.1 2E-10 7E-15 114.7 10.9 83 556-640 50-138 (192)
145 1njg_A DNA polymerase III subu 99.1 1.1E-09 3.9E-14 112.9 16.9 173 148-337 20-231 (250)
146 2wfh_A SLIT homolog 2 protein 99.1 2.8E-10 9.7E-15 113.8 11.0 118 564-685 14-138 (193)
147 1fnn_A CDC6P, cell division co 99.1 2.9E-09 1E-13 118.6 20.1 226 150-386 16-301 (389)
148 1ds9_A Outer arm dynein; leuci 99.1 1.4E-12 4.8E-17 131.3 -7.3 105 551-659 39-150 (198)
149 2chg_A Replication factor C sm 99.0 4.9E-09 1.7E-13 106.6 17.5 173 147-335 13-205 (226)
150 1ds9_A Outer arm dynein; leuci 99.0 2.6E-11 8.9E-16 121.9 -3.2 110 526-646 44-158 (198)
151 2o6r_A Variable lymphocyte rec 98.9 4.5E-09 1.6E-13 103.3 11.8 101 581-684 28-135 (177)
152 1sxj_B Activator 1 37 kDa subu 98.9 2.2E-08 7.4E-13 108.4 17.8 170 148-335 18-211 (323)
153 2r9u_A Variable lymphocyte rec 98.9 3E-09 1E-13 104.4 9.4 96 533-639 15-116 (174)
154 2r9u_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 103.9 8.7 104 515-626 17-126 (174)
155 3g39_A Variable lymphocyte rec 98.9 4.6E-09 1.6E-13 102.6 9.2 97 532-639 11-113 (170)
156 3sb4_A Hypothetical leucine ri 98.8 7E-09 2.4E-13 112.9 10.3 202 484-706 48-324 (329)
157 3g39_A Variable lymphocyte rec 98.8 6.7E-09 2.3E-13 101.4 8.6 100 514-621 13-118 (170)
158 3ogk_B Coronatine-insensitive 98.8 4.5E-10 1.5E-14 132.7 -0.6 195 483-682 110-327 (592)
159 3ogk_B Coronatine-insensitive 98.7 1.2E-09 4.1E-14 129.0 -1.0 198 479-684 264-499 (592)
160 1iqp_A RFCS; clamp loader, ext 98.7 1.4E-07 4.7E-12 102.2 14.6 173 147-335 21-213 (327)
161 3sb4_A Hypothetical leucine ri 98.6 8.9E-08 3.1E-12 104.1 11.2 195 475-680 83-328 (329)
162 2p1m_B Transport inhibitor res 98.5 1.3E-09 4.3E-14 128.8 -7.3 102 483-589 128-243 (594)
163 2p1m_B Transport inhibitor res 98.5 9E-09 3.1E-13 121.4 -0.5 194 481-681 101-346 (594)
164 2ifg_A High affinity nerve gro 98.5 1.6E-07 5.3E-12 102.9 8.6 96 535-640 13-115 (347)
165 2chq_A Replication factor C sm 98.5 9.3E-07 3.2E-11 95.3 14.5 168 147-333 13-203 (319)
166 4fdw_A Leucine rich hypothetic 98.5 1.3E-06 4.4E-11 97.5 15.9 189 475-682 126-332 (401)
167 3un9_A NLR family member X1; l 98.5 1.8E-08 6.1E-13 111.4 0.4 151 484-639 71-250 (372)
168 1jbk_A CLPB protein; beta barr 98.5 6.8E-07 2.3E-11 88.2 11.9 49 149-199 20-68 (195)
169 1jr3_A DNA polymerase III subu 98.4 1.4E-06 4.8E-11 96.2 14.6 174 149-334 14-221 (373)
170 1hqc_A RUVB; extended AAA-ATPa 98.4 1.5E-06 5E-11 94.1 14.0 218 148-386 9-260 (324)
171 4fdw_A Leucine rich hypothetic 98.4 2.2E-06 7.4E-11 95.6 15.4 190 474-683 147-355 (401)
172 1sxj_A Activator 1 95 kDa subu 98.4 1.8E-06 6.2E-11 99.6 15.0 176 147-333 35-252 (516)
173 2z4s_A Chromosomal replication 98.4 1.3E-06 4.4E-11 98.6 13.3 164 151-332 105-304 (440)
174 3h4m_A Proteasome-activating n 98.4 5E-06 1.7E-10 88.1 16.3 162 148-332 14-229 (285)
175 3bos_A Putative DNA replicatio 98.4 1.7E-06 5.8E-11 88.9 11.9 158 149-334 26-217 (242)
176 2ifg_A High affinity nerve gro 98.3 1.1E-06 3.8E-11 96.1 9.3 94 564-659 12-113 (347)
177 3un9_A NLR family member X1; l 98.3 4.2E-08 1.4E-12 108.5 -2.1 144 510-660 72-250 (372)
178 1sxj_D Activator 1 41 kDa subu 98.3 8.3E-06 2.8E-10 89.2 16.2 179 147-333 33-234 (353)
179 3te6_A Regulatory protein SIR3 98.3 4.5E-06 1.5E-10 89.1 13.4 146 152-302 21-211 (318)
180 1l8q_A Chromosomal replication 98.3 1.7E-05 6E-10 85.6 17.5 162 150-330 10-204 (324)
181 3pvs_A Replication-associated 98.3 1E-05 3.5E-10 91.2 16.1 165 147-333 22-214 (447)
182 3d8b_A Fidgetin-like protein 1 98.2 2.3E-05 7.7E-10 86.0 16.6 185 127-335 63-296 (357)
183 3pfi_A Holliday junction ATP-d 98.2 1.5E-05 5E-10 86.8 14.8 177 148-334 26-227 (338)
184 3b9p_A CG5977-PA, isoform A; A 98.2 2.6E-05 8.8E-10 83.1 15.9 164 148-334 18-233 (297)
185 2qz4_A Paraplegin; AAA+, SPG7, 98.2 4.2E-05 1.4E-09 79.7 17.2 164 150-333 5-221 (262)
186 3uk6_A RUVB-like 2; hexameric 98.1 2.5E-05 8.7E-10 85.9 16.0 178 150-333 43-302 (368)
187 3eie_A Vacuolar protein sortin 98.1 4.4E-05 1.5E-09 82.4 17.4 166 148-334 15-228 (322)
188 1d2n_A N-ethylmaleimide-sensit 98.1 4.9E-05 1.7E-09 79.8 17.1 181 151-354 33-263 (272)
189 1sxj_E Activator 1 40 kDa subu 98.1 1.5E-05 5.2E-10 87.2 13.5 182 147-334 10-237 (354)
190 3cf0_A Transitional endoplasmi 98.1 5E-05 1.7E-09 81.1 16.3 159 150-329 14-223 (301)
191 2qp9_X Vacuolar protein sortin 98.1 8.9E-05 3E-09 81.1 17.8 163 149-334 49-261 (355)
192 2p65_A Hypothetical protein PF 98.1 9.2E-06 3.1E-10 79.6 9.0 50 149-200 20-69 (187)
193 2ra8_A Uncharacterized protein 98.0 6.7E-07 2.3E-11 98.1 0.2 57 602-659 250-317 (362)
194 2w58_A DNAI, primosome compone 98.0 1.3E-05 4.6E-10 80.0 9.6 96 150-260 24-125 (202)
195 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00011 3.9E-09 79.1 17.5 163 149-334 10-223 (322)
196 2zan_A Vacuolar protein sortin 98.0 9.8E-05 3.3E-09 83.3 16.6 168 148-334 131-345 (444)
197 2ra8_A Uncharacterized protein 97.9 2.2E-06 7.4E-11 94.0 1.8 131 552-684 164-318 (362)
198 3vfd_A Spastin; ATPase, microt 97.9 0.00016 5.3E-09 80.3 16.6 166 148-334 112-326 (389)
199 3u61_B DNA polymerase accessor 97.9 0.00017 5.8E-09 77.8 15.6 161 147-331 22-213 (324)
200 4b4t_J 26S protease regulatory 97.8 0.00037 1.3E-08 76.3 16.2 154 151-327 148-354 (405)
201 3syl_A Protein CBBX; photosynt 97.8 0.00021 7.2E-09 76.4 13.8 131 152-303 32-218 (309)
202 3hu3_A Transitional endoplasmi 97.7 0.00019 6.4E-09 81.7 13.8 160 151-333 204-414 (489)
203 3ec2_A DNA replication protein 97.7 7.2E-05 2.5E-09 73.2 8.7 72 174-260 38-110 (180)
204 3n70_A Transport activator; si 97.7 4.9E-05 1.7E-09 71.6 7.1 47 152-198 2-48 (145)
205 4b4t_L 26S protease subunit RP 97.7 0.00053 1.8E-08 76.2 16.1 154 151-327 181-387 (437)
206 1sxj_C Activator 1 40 kDa subu 97.7 0.00067 2.3E-08 73.6 16.6 166 149-331 23-209 (340)
207 1a5t_A Delta prime, HOLB; zinc 97.7 0.00058 2E-08 73.9 16.0 155 159-334 10-205 (334)
208 1qvr_A CLPB protein; coiled co 97.6 0.00026 8.8E-09 86.8 13.9 50 148-199 167-216 (854)
209 1lv7_A FTSH; alpha/beta domain 97.6 0.00066 2.2E-08 70.4 14.9 53 149-201 10-72 (257)
210 1io0_A Tropomodulin; LRR prote 97.6 9E-06 3.1E-10 80.2 0.5 106 530-639 36-162 (185)
211 4b4t_H 26S protease regulatory 97.6 0.00086 2.9E-08 74.3 16.2 154 151-327 209-415 (467)
212 4b4t_K 26S protease regulatory 97.6 0.00062 2.1E-08 75.5 14.6 52 151-202 172-234 (428)
213 4b4t_M 26S protease regulatory 97.5 0.00047 1.6E-08 76.5 12.9 154 150-326 180-386 (434)
214 3co5_A Putative two-component 97.5 3.9E-05 1.3E-09 72.1 3.4 48 152-199 5-52 (143)
215 4b4t_I 26S protease regulatory 97.5 0.00069 2.4E-08 74.4 13.7 154 151-327 182-388 (437)
216 2bjv_A PSP operon transcriptio 97.5 0.00026 9.1E-09 73.8 9.3 49 151-199 6-54 (265)
217 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00096 3.3E-08 80.7 15.3 137 149-302 184-362 (758)
218 4fcw_A Chaperone protein CLPB; 97.4 0.00084 2.9E-08 71.7 13.1 49 152-200 18-73 (311)
219 2ce7_A Cell division protein F 97.4 0.0024 8.1E-08 72.0 16.9 155 150-327 15-221 (476)
220 1ofh_A ATP-dependent HSL prote 97.4 0.00086 3E-08 71.4 12.7 49 152-200 16-76 (310)
221 3pxg_A Negative regulator of g 97.4 0.00073 2.5E-08 76.7 12.7 135 149-302 178-338 (468)
222 1in4_A RUVB, holliday junction 97.4 0.0074 2.5E-07 65.1 19.9 52 149-200 23-77 (334)
223 2r62_A Cell division protease 97.4 8E-05 2.7E-09 77.9 4.1 54 149-202 9-72 (268)
224 3cf2_A TER ATPase, transitiona 97.3 0.0014 4.9E-08 78.2 14.5 154 151-327 204-407 (806)
225 2kjq_A DNAA-related protein; s 97.3 0.00018 6.2E-09 68.0 5.3 36 174-209 36-71 (149)
226 3rw6_A Nuclear RNA export fact 97.3 9.9E-05 3.4E-09 76.7 3.6 14 558-571 168-181 (267)
227 1ojl_A Transcriptional regulat 97.3 0.00043 1.5E-08 73.8 8.3 48 151-198 2-49 (304)
228 2qgz_A Helicase loader, putati 97.2 0.00041 1.4E-08 74.1 7.7 59 151-209 124-188 (308)
229 3rw6_A Nuclear RNA export fact 97.2 0.00016 5.5E-09 75.1 4.2 64 580-645 169-237 (267)
230 2gno_A DNA polymerase III, gam 97.2 0.0027 9.1E-08 67.6 13.2 130 155-302 1-152 (305)
231 3e4g_A ATP synthase subunit S, 97.1 0.00017 6E-09 69.6 2.4 38 605-642 115-153 (176)
232 3pxi_A Negative regulator of g 97.1 0.0027 9.1E-08 76.8 13.1 135 149-302 178-338 (758)
233 1ixz_A ATP-dependent metallopr 97.1 0.0056 1.9E-07 63.2 13.8 51 149-199 14-74 (254)
234 3t15_A Ribulose bisphosphate c 97.0 0.0017 5.8E-08 68.8 9.6 29 173-201 35-63 (293)
235 2x8a_A Nuclear valosin-contain 97.0 0.0085 2.9E-07 62.6 14.6 24 177-200 47-70 (274)
236 3pxi_A Negative regulator of g 96.9 0.002 6.8E-08 77.9 10.6 50 151-200 491-547 (758)
237 3e4g_A ATP synthase subunit S, 96.9 0.00057 1.9E-08 66.0 4.4 83 605-688 62-154 (176)
238 1ypw_A Transitional endoplasmi 96.9 0.0029 1E-07 76.5 11.7 52 151-202 204-266 (806)
239 1iy2_A ATP-dependent metallopr 96.9 0.01 3.4E-07 62.2 14.5 52 148-199 37-98 (278)
240 4fs7_A Uncharacterized protein 96.9 0.0066 2.3E-07 67.1 13.5 62 475-539 152-217 (394)
241 1io0_A Tropomodulin; LRR prote 96.9 0.00026 8.8E-09 69.6 1.7 89 479-571 30-134 (185)
242 4fs7_A Uncharacterized protein 96.8 0.017 5.8E-07 63.7 15.7 133 473-613 59-217 (394)
243 2c9o_A RUVB-like 1; hexameric 96.3 0.0064 2.2E-07 68.7 8.2 52 150-201 36-90 (456)
244 2dhr_A FTSH; AAA+ protein, hex 96.3 0.018 6.1E-07 65.3 11.7 51 149-199 29-89 (499)
245 3m6a_A ATP-dependent protease 96.3 0.021 7.3E-07 65.8 12.6 50 152-201 82-135 (543)
246 4gt6_A Cell surface protein; l 96.1 0.06 2E-06 59.3 14.4 20 475-494 77-96 (394)
247 4h09_A Hypothetical leucine ri 96.0 0.11 3.6E-06 56.8 16.2 100 599-710 235-340 (379)
248 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0084 2.9E-07 63.3 6.7 32 175-209 124-155 (331)
249 4gt6_A Cell surface protein; l 96.0 0.13 4.3E-06 56.6 16.8 76 600-681 261-342 (394)
250 1r6b_X CLPA protein; AAA+, N-t 95.9 0.026 9E-07 68.0 11.4 49 151-199 458-513 (758)
251 1ye8_A Protein THEP1, hypothet 95.9 0.085 2.9E-06 51.0 12.8 24 176-199 2-25 (178)
252 2r44_A Uncharacterized protein 95.6 0.0073 2.5E-07 65.0 4.3 48 150-201 26-73 (331)
253 1qhx_A CPT, protein (chloramph 95.4 0.0074 2.5E-07 58.3 3.2 26 175-200 4-29 (178)
254 1g5t_A COB(I)alamin adenosyltr 95.4 0.03 1E-06 54.7 7.5 98 174-272 28-163 (196)
255 1u0j_A DNA replication protein 95.3 0.065 2.2E-06 55.1 10.1 37 161-197 91-127 (267)
256 3c8u_A Fructokinase; YP_612366 95.3 0.013 4.3E-07 58.5 4.7 28 172-199 20-47 (208)
257 4h09_A Hypothetical leucine ri 95.3 0.069 2.4E-06 58.3 11.2 76 556-635 259-340 (379)
258 3hws_A ATP-dependent CLP prote 95.2 0.011 3.8E-07 64.5 4.3 47 153-199 17-76 (363)
259 3kb2_A SPBC2 prophage-derived 95.2 0.0095 3.3E-07 57.0 3.3 25 175-199 2-26 (173)
260 2cvh_A DNA repair and recombin 95.1 0.05 1.7E-06 54.3 8.6 33 174-209 20-52 (220)
261 3rfe_A Platelet glycoprotein I 95.1 0.018 6.2E-07 52.6 4.7 51 586-639 13-66 (130)
262 1qvr_A CLPB protein; coiled co 95.1 0.035 1.2E-06 67.9 8.5 48 152-199 559-613 (854)
263 1rz3_A Hypothetical protein rb 95.1 0.018 6.2E-07 57.0 5.0 43 157-199 4-47 (201)
264 1zu4_A FTSY; GTPase, signal re 95.0 0.059 2E-06 57.5 9.2 36 172-208 103-138 (320)
265 3vaa_A Shikimate kinase, SK; s 95.0 0.012 4E-07 58.3 3.3 26 174-199 25-50 (199)
266 3trf_A Shikimate kinase, SK; a 94.9 0.012 4.2E-07 57.2 3.3 26 174-199 5-30 (185)
267 3lw7_A Adenylate kinase relate 94.9 0.011 3.7E-07 56.7 2.9 23 175-198 2-24 (179)
268 2ga8_A Hypothetical 39.9 kDa p 94.7 0.016 5.6E-07 62.1 3.8 46 157-202 5-52 (359)
269 1odf_A YGR205W, hypothetical 3 94.6 0.029 9.8E-07 59.0 5.4 30 171-200 28-57 (290)
270 3hr8_A Protein RECA; alpha and 94.6 0.15 5.2E-06 54.9 11.2 50 160-209 46-96 (356)
271 1vma_A Cell division protein F 94.6 0.18 6E-06 53.3 11.5 43 159-201 83-131 (306)
272 1zuh_A Shikimate kinase; alpha 94.5 0.019 6.4E-07 54.9 3.2 26 174-199 7-32 (168)
273 3e70_C DPA, signal recognition 94.5 0.098 3.3E-06 55.9 9.1 28 173-200 128-155 (328)
274 1kag_A SKI, shikimate kinase I 94.4 0.015 5.3E-07 55.7 2.5 25 175-199 5-29 (173)
275 1ly1_A Polynucleotide kinase; 94.4 0.021 7.3E-07 55.0 3.4 22 175-196 3-24 (181)
276 1nks_A Adenylate kinase; therm 94.3 0.036 1.2E-06 53.9 5.0 26 175-200 2-27 (194)
277 3iij_A Coilin-interacting nucl 94.3 0.017 5.8E-07 55.9 2.5 26 174-199 11-36 (180)
278 1zp6_A Hypothetical protein AT 94.3 0.022 7.7E-07 55.5 3.4 24 174-197 9-32 (191)
279 2rhm_A Putative kinase; P-loop 94.3 0.028 9.7E-07 54.8 4.1 25 174-198 5-29 (193)
280 1um8_A ATP-dependent CLP prote 94.3 0.026 8.8E-07 61.9 4.1 26 175-200 73-98 (376)
281 3ice_A Transcription terminati 94.2 0.017 5.8E-07 62.3 2.4 26 175-200 175-200 (422)
282 2ze6_A Isopentenyl transferase 94.2 0.026 9E-07 58.1 3.7 25 175-199 2-26 (253)
283 2jaq_A Deoxyguanosine kinase; 94.1 0.024 8.2E-07 55.9 3.3 25 176-200 2-26 (205)
284 3rfe_A Platelet glycoprotein I 94.1 0.033 1.1E-06 50.8 3.9 51 563-614 11-65 (130)
285 1via_A Shikimate kinase; struc 94.1 0.024 8.2E-07 54.6 3.0 24 176-199 6-29 (175)
286 3t61_A Gluconokinase; PSI-biol 94.0 0.02 7E-07 56.6 2.5 25 174-198 18-42 (202)
287 2iyv_A Shikimate kinase, SK; t 94.0 0.02 7E-07 55.5 2.5 25 175-199 3-27 (184)
288 1kgd_A CASK, peripheral plasma 94.0 0.023 7.8E-07 55.2 2.8 25 175-199 6-30 (180)
289 3uie_A Adenylyl-sulfate kinase 94.0 0.03 1E-06 55.3 3.6 27 173-199 24-50 (200)
290 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.038 1.3E-06 62.7 4.8 45 151-199 22-66 (500)
291 3jvv_A Twitching mobility prot 93.9 0.023 7.9E-07 61.6 2.9 96 175-275 124-234 (356)
292 4eun_A Thermoresistant glucoki 93.9 0.037 1.3E-06 54.6 4.1 25 174-198 29-53 (200)
293 2c95_A Adenylate kinase 1; tra 93.9 0.03 1E-06 54.8 3.5 26 174-199 9-34 (196)
294 3tlx_A Adenylate kinase 2; str 93.9 0.033 1.1E-06 56.9 3.9 27 172-198 27-53 (243)
295 1kht_A Adenylate kinase; phosp 93.9 0.026 9E-07 54.9 3.0 26 175-200 4-29 (192)
296 1g8p_A Magnesium-chelatase 38 93.9 0.023 7.8E-07 61.4 2.7 50 148-199 21-70 (350)
297 3cf2_A TER ATPase, transitiona 93.8 0.043 1.5E-06 65.5 5.1 51 151-201 477-538 (806)
298 1knq_A Gluconate kinase; ALFA/ 93.8 0.033 1.1E-06 53.5 3.5 25 174-198 8-32 (175)
299 4g1u_C Hemin import ATP-bindin 93.8 0.34 1.2E-05 50.0 11.4 22 175-196 38-59 (266)
300 1sky_E F1-ATPase, F1-ATP synth 93.8 0.13 4.5E-06 57.2 8.6 33 176-208 153-186 (473)
301 1jr3_D DNA polymerase III, del 93.8 0.76 2.6E-05 49.2 14.6 139 173-332 17-183 (343)
302 1ukz_A Uridylate kinase; trans 93.7 0.037 1.3E-06 54.6 3.7 27 172-198 13-39 (203)
303 2bwj_A Adenylate kinase 5; pho 93.7 0.033 1.1E-06 54.7 3.3 25 175-199 13-37 (199)
304 3bh0_A DNAB-like replicative h 93.7 0.18 6.3E-06 53.5 9.4 70 154-230 49-118 (315)
305 1tev_A UMP-CMP kinase; ploop, 93.7 0.035 1.2E-06 54.1 3.5 25 175-199 4-28 (196)
306 3dm5_A SRP54, signal recogniti 93.7 0.2 6.9E-06 55.5 9.9 29 173-201 99-127 (443)
307 3cm0_A Adenylate kinase; ATP-b 93.7 0.036 1.2E-06 53.8 3.5 25 175-199 5-29 (186)
308 2yvu_A Probable adenylyl-sulfa 93.7 0.052 1.8E-06 52.8 4.6 27 174-200 13-39 (186)
309 1e6c_A Shikimate kinase; phosp 93.7 0.026 9E-07 54.0 2.5 25 175-199 3-27 (173)
310 1ex7_A Guanylate kinase; subst 93.6 0.024 8.1E-07 55.3 2.1 29 175-203 2-30 (186)
311 2vli_A Antibiotic resistance p 93.6 0.024 8.2E-07 54.8 2.1 25 175-199 6-30 (183)
312 2pt5_A Shikimate kinase, SK; a 93.6 0.037 1.3E-06 52.6 3.4 24 176-199 2-25 (168)
313 1xjc_A MOBB protein homolog; s 93.6 0.051 1.7E-06 52.0 4.2 29 173-201 3-31 (169)
314 1qf9_A UMP/CMP kinase, protein 93.5 0.042 1.4E-06 53.5 3.7 26 174-199 6-31 (194)
315 1uf9_A TT1252 protein; P-loop, 93.5 0.043 1.5E-06 54.0 3.8 26 172-197 6-31 (203)
316 1y63_A LMAJ004144AAA protein; 93.5 0.036 1.2E-06 53.9 3.1 24 174-197 10-33 (184)
317 1uj2_A Uridine-cytidine kinase 93.5 0.041 1.4E-06 56.5 3.7 28 172-199 20-47 (252)
318 2bdt_A BH3686; alpha-beta prot 93.5 0.04 1.4E-06 53.7 3.4 22 175-196 3-24 (189)
319 2plr_A DTMP kinase, probable t 93.4 0.066 2.3E-06 53.0 5.1 27 175-201 5-31 (213)
320 3b9q_A Chloroplast SRP recepto 93.4 0.16 5.6E-06 53.5 8.3 36 173-209 99-134 (302)
321 1j8m_F SRP54, signal recogniti 93.4 0.18 6.3E-06 53.0 8.6 28 174-201 98-125 (297)
322 2if2_A Dephospho-COA kinase; a 93.4 0.04 1.4E-06 54.4 3.4 22 175-196 2-23 (204)
323 1v5w_A DMC1, meiotic recombina 93.4 0.28 9.6E-06 52.8 10.3 49 161-209 109-163 (343)
324 3tau_A Guanylate kinase, GMP k 93.4 0.038 1.3E-06 55.0 3.1 27 174-200 8-34 (208)
325 1aky_A Adenylate kinase; ATP:A 93.4 0.039 1.3E-06 55.3 3.2 25 175-199 5-29 (220)
326 2cdn_A Adenylate kinase; phosp 93.4 0.043 1.5E-06 54.1 3.5 26 174-199 20-45 (201)
327 2xxa_A Signal recognition part 93.3 0.16 5.4E-06 56.5 8.4 42 160-201 79-127 (433)
328 3a00_A Guanylate kinase, GMP k 93.3 0.033 1.1E-06 54.3 2.4 29 175-203 2-30 (186)
329 1cke_A CK, MSSA, protein (cyti 93.3 0.043 1.5E-06 55.2 3.3 25 175-199 6-30 (227)
330 1tue_A Replication protein E1; 93.3 0.061 2.1E-06 52.9 4.2 40 160-200 45-84 (212)
331 2qt1_A Nicotinamide riboside k 93.2 0.046 1.6E-06 54.2 3.5 27 172-198 19-45 (207)
332 2qor_A Guanylate kinase; phosp 93.2 0.033 1.1E-06 55.2 2.4 26 174-199 12-37 (204)
333 2b8t_A Thymidine kinase; deoxy 93.1 0.1 3.5E-06 52.4 5.8 35 174-208 12-46 (223)
334 1g41_A Heat shock protein HSLU 93.1 0.062 2.1E-06 59.6 4.5 51 152-202 16-78 (444)
335 1nn5_A Similar to deoxythymidy 93.0 0.067 2.3E-06 53.1 4.4 28 174-201 9-36 (215)
336 2pbr_A DTMP kinase, thymidylat 93.0 0.049 1.7E-06 53.1 3.3 24 176-199 2-25 (195)
337 3tr0_A Guanylate kinase, GMP k 93.0 0.047 1.6E-06 53.8 3.1 24 175-198 8-31 (205)
338 3asz_A Uridine kinase; cytidin 92.9 0.063 2.1E-06 53.3 4.0 27 173-199 5-31 (211)
339 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.053 1.8E-06 56.0 3.5 26 174-199 4-29 (260)
340 1jjv_A Dephospho-COA kinase; P 92.9 0.048 1.6E-06 54.0 3.0 22 175-196 3-24 (206)
341 2j41_A Guanylate kinase; GMP, 92.9 0.049 1.7E-06 53.7 3.1 24 175-198 7-30 (207)
342 2wwf_A Thymidilate kinase, put 92.9 0.049 1.7E-06 54.0 3.1 27 174-200 10-36 (212)
343 2grj_A Dephospho-COA kinase; T 92.9 0.057 2E-06 52.9 3.5 26 173-198 11-36 (192)
344 2og2_A Putative signal recogni 92.8 0.22 7.5E-06 53.8 8.3 36 173-209 156-191 (359)
345 3umf_A Adenylate kinase; rossm 92.8 0.064 2.2E-06 53.6 3.8 27 172-198 27-53 (217)
346 2bbw_A Adenylate kinase 4, AK4 92.8 0.054 1.8E-06 55.4 3.3 26 174-199 27-52 (246)
347 1zd8_A GTP:AMP phosphotransfer 92.8 0.055 1.9E-06 54.5 3.4 25 174-198 7-31 (227)
348 4gp7_A Metallophosphoesterase; 92.8 0.044 1.5E-06 52.6 2.5 21 175-195 10-30 (171)
349 3nwj_A ATSK2; P loop, shikimat 92.8 0.043 1.5E-06 56.3 2.5 25 175-199 49-73 (250)
350 3io5_A Recombination and repai 92.7 0.31 1.1E-05 51.2 9.0 34 176-209 30-65 (333)
351 1zak_A Adenylate kinase; ATP:A 92.7 0.049 1.7E-06 54.6 2.9 25 175-199 6-30 (222)
352 1gtv_A TMK, thymidylate kinase 92.7 0.043 1.5E-06 54.5 2.4 24 176-199 2-25 (214)
353 4e22_A Cytidylate kinase; P-lo 92.7 0.057 1.9E-06 55.5 3.3 26 174-199 27-52 (252)
354 2yhs_A FTSY, cell division pro 92.7 0.27 9.3E-06 55.1 8.9 36 173-209 292-327 (503)
355 3tqc_A Pantothenate kinase; bi 92.6 0.074 2.5E-06 56.6 4.1 47 153-199 69-117 (321)
356 3ney_A 55 kDa erythrocyte memb 92.6 0.058 2E-06 53.0 3.1 28 173-200 18-45 (197)
357 1gvn_B Zeta; postsegregational 92.5 0.1 3.4E-06 54.8 5.0 26 173-198 32-57 (287)
358 1pgv_A TMD-1, tropomodulin TMD 92.5 0.029 9.8E-07 55.1 0.7 17 555-571 65-81 (197)
359 1eiw_A Hypothetical protein MT 92.5 0.022 7.5E-07 50.1 -0.1 58 1-77 4-61 (111)
360 2zr9_A Protein RECA, recombina 92.4 0.22 7.4E-06 53.7 7.7 52 158-209 44-96 (349)
361 3fb4_A Adenylate kinase; psych 92.4 0.065 2.2E-06 53.4 3.3 23 176-198 2-24 (216)
362 3k1j_A LON protease, ATP-depen 92.4 0.068 2.3E-06 62.5 3.9 50 149-202 39-88 (604)
363 3fwy_A Light-independent proto 92.3 0.066 2.3E-06 56.9 3.3 29 172-200 46-74 (314)
364 2z0h_A DTMP kinase, thymidylat 92.3 0.071 2.4E-06 52.1 3.3 24 176-199 2-25 (197)
365 3be4_A Adenylate kinase; malar 92.3 0.064 2.2E-06 53.7 3.0 25 175-199 6-30 (217)
366 3dl0_A Adenylate kinase; phosp 92.2 0.069 2.4E-06 53.2 3.2 23 176-198 2-24 (216)
367 3ake_A Cytidylate kinase; CMP 92.2 0.076 2.6E-06 52.4 3.5 24 176-199 4-27 (208)
368 2ck3_D ATP synthase subunit be 92.2 0.38 1.3E-05 53.4 9.2 52 175-229 154-206 (482)
369 3p32_A Probable GTPase RV1496/ 92.2 0.17 5.9E-06 54.8 6.5 39 162-200 67-105 (355)
370 4a1f_A DNAB helicase, replicat 92.1 0.25 8.7E-06 52.8 7.6 72 153-231 26-97 (338)
371 1m7g_A Adenylylsulfate kinase; 92.1 0.082 2.8E-06 52.6 3.6 26 174-199 25-50 (211)
372 2pez_A Bifunctional 3'-phospho 92.1 0.088 3E-06 50.7 3.7 26 174-199 5-30 (179)
373 2v54_A DTMP kinase, thymidylat 92.1 0.067 2.3E-06 52.6 2.9 24 175-198 5-28 (204)
374 1fx0_B ATP synthase beta chain 92.0 0.36 1.2E-05 53.8 8.8 52 175-229 166-218 (498)
375 4a74_A DNA repair and recombin 92.0 0.15 5E-06 51.1 5.3 25 174-198 25-49 (231)
376 3d3q_A TRNA delta(2)-isopenten 92.0 0.082 2.8E-06 56.4 3.5 25 175-199 8-32 (340)
377 2p5t_B PEZT; postsegregational 91.9 0.077 2.6E-06 54.5 3.2 27 173-199 31-57 (253)
378 1lvg_A Guanylate kinase, GMP k 91.9 0.061 2.1E-06 53.0 2.4 25 175-199 5-29 (198)
379 2q6t_A DNAB replication FORK h 91.9 0.81 2.8E-05 51.1 11.9 71 154-231 181-252 (444)
380 2f6r_A COA synthase, bifunctio 91.9 0.091 3.1E-06 54.9 3.8 25 172-196 73-97 (281)
381 3l0o_A Transcription terminati 91.8 0.24 8.3E-06 53.4 6.8 26 175-200 176-201 (427)
382 2hf9_A Probable hydrogenase ni 91.8 0.19 6.4E-06 50.3 5.8 29 173-201 37-65 (226)
383 2wsm_A Hydrogenase expression/ 91.8 0.13 4.6E-06 51.1 4.7 42 158-201 16-57 (221)
384 3r20_A Cytidylate kinase; stru 91.7 0.089 3E-06 53.2 3.3 25 175-199 10-34 (233)
385 2jeo_A Uridine-cytidine kinase 91.7 0.091 3.1E-06 53.6 3.4 26 173-198 24-49 (245)
386 3a8t_A Adenylate isopentenyltr 91.6 0.072 2.5E-06 56.7 2.6 26 174-199 40-65 (339)
387 3aez_A Pantothenate kinase; tr 91.6 0.096 3.3E-06 55.6 3.6 28 172-199 88-115 (312)
388 1vht_A Dephospho-COA kinase; s 91.6 0.1 3.5E-06 52.1 3.6 23 174-196 4-26 (218)
389 1e4v_A Adenylate kinase; trans 91.6 0.1 3.6E-06 51.9 3.7 23 176-198 2-24 (214)
390 3crm_A TRNA delta(2)-isopenten 91.6 0.084 2.9E-06 56.0 3.1 25 175-199 6-30 (323)
391 1ak2_A Adenylate kinase isoenz 91.6 0.092 3.2E-06 53.1 3.3 25 175-199 17-41 (233)
392 1rj9_A FTSY, signal recognitio 91.6 0.14 4.7E-06 54.2 4.7 36 173-209 101-136 (304)
393 1znw_A Guanylate kinase, GMP k 91.5 0.088 3E-06 52.2 3.0 24 175-198 21-44 (207)
394 1u94_A RECA protein, recombina 91.5 0.29 9.9E-06 52.9 7.3 54 156-209 44-98 (356)
395 1n0w_A DNA repair protein RAD5 91.5 0.13 4.6E-06 51.9 4.5 49 161-209 11-65 (243)
396 2f1r_A Molybdopterin-guanine d 91.4 0.079 2.7E-06 50.8 2.4 26 175-200 3-28 (171)
397 2xb4_A Adenylate kinase; ATP-b 91.3 0.1 3.5E-06 52.4 3.3 23 176-198 2-24 (223)
398 2w0m_A SSO2452; RECA, SSPF, un 91.2 0.13 4.6E-06 51.5 4.1 35 175-209 24-58 (235)
399 1htw_A HI0065; nucleotide-bind 91.2 0.12 4E-06 48.9 3.4 26 173-198 32-57 (158)
400 1z6g_A Guanylate kinase; struc 91.1 0.082 2.8E-06 52.9 2.4 24 175-198 24-47 (218)
401 2dr3_A UPF0273 protein PH0284; 91.0 0.13 4.4E-06 52.2 3.7 35 175-209 24-58 (247)
402 3bgw_A DNAB-like replicative h 90.9 0.4 1.4E-05 53.5 7.9 55 154-209 178-232 (444)
403 2eyu_A Twitching motility prot 90.8 0.17 5.7E-06 52.3 4.3 35 174-208 25-59 (261)
404 2ehv_A Hypothetical protein PH 90.7 0.11 3.9E-06 52.8 3.0 35 175-209 31-66 (251)
405 3sr0_A Adenylate kinase; phosp 90.7 0.13 4.6E-06 50.9 3.4 23 176-198 2-24 (206)
406 2px0_A Flagellar biosynthesis 90.7 0.12 4.1E-06 54.4 3.1 27 173-199 104-130 (296)
407 3exa_A TRNA delta(2)-isopenten 90.6 0.13 4.5E-06 54.0 3.3 24 175-198 4-27 (322)
408 2r6a_A DNAB helicase, replicat 90.6 0.86 2.9E-05 51.0 10.3 68 155-229 185-253 (454)
409 1sq5_A Pantothenate kinase; P- 90.5 0.15 5.3E-06 53.9 3.9 28 172-199 78-105 (308)
410 2i3b_A HCR-ntpase, human cance 90.4 0.12 4E-06 50.5 2.6 24 176-199 3-26 (189)
411 1np6_A Molybdopterin-guanine d 90.4 0.2 6.8E-06 48.1 4.2 27 174-200 6-32 (174)
412 3kl4_A SRP54, signal recogniti 90.3 0.25 8.6E-06 54.6 5.5 29 173-201 96-124 (433)
413 1a7j_A Phosphoribulokinase; tr 90.3 0.082 2.8E-06 55.5 1.5 27 173-199 4-30 (290)
414 1s96_A Guanylate kinase, GMP k 90.3 0.13 4.4E-06 51.5 2.9 26 174-199 16-41 (219)
415 1q3t_A Cytidylate kinase; nucl 90.3 0.15 5E-06 51.7 3.4 28 172-199 14-41 (236)
416 1ltq_A Polynucleotide kinase; 90.2 0.14 4.9E-06 53.8 3.4 23 175-197 3-25 (301)
417 1cr0_A DNA primase/helicase; R 90.2 0.21 7.2E-06 52.5 4.6 35 175-209 36-71 (296)
418 3lnc_A Guanylate kinase, GMP k 90.2 0.091 3.1E-06 53.0 1.7 24 175-198 28-52 (231)
419 3vr4_D V-type sodium ATPase su 90.2 0.32 1.1E-05 53.6 6.1 82 176-260 153-258 (465)
420 3foz_A TRNA delta(2)-isopenten 90.0 0.16 5.5E-06 53.3 3.4 26 173-198 9-34 (316)
421 1svm_A Large T antigen; AAA+ f 90.0 0.19 6.4E-06 54.7 4.0 28 172-199 167-194 (377)
422 2z43_A DNA repair and recombin 89.9 0.42 1.4E-05 50.9 6.7 49 161-209 94-148 (324)
423 1nlf_A Regulatory protein REPA 89.7 0.29 9.8E-06 50.9 5.1 26 175-200 31-56 (279)
424 3fdi_A Uncharacterized protein 89.6 0.2 7E-06 49.3 3.7 26 175-200 7-32 (201)
425 2onk_A Molybdate/tungstate ABC 89.6 0.16 5.5E-06 51.6 2.9 35 172-208 23-57 (240)
426 1yrb_A ATP(GTP)binding protein 89.6 0.31 1.1E-05 49.9 5.2 27 173-199 13-39 (262)
427 2v3c_C SRP54, signal recogniti 89.4 0.19 6.4E-06 55.9 3.5 28 173-200 98-125 (432)
428 2pcj_A ABC transporter, lipopr 89.3 0.16 5.4E-06 51.1 2.7 33 175-208 31-63 (224)
429 4eaq_A DTMP kinase, thymidylat 89.3 0.21 7.2E-06 50.4 3.6 27 174-200 26-52 (229)
430 3b85_A Phosphate starvation-in 89.3 0.14 4.9E-06 50.7 2.3 23 175-197 23-45 (208)
431 3zvl_A Bifunctional polynucleo 89.3 0.16 5.6E-06 56.2 3.0 27 172-198 256-282 (416)
432 3j16_B RLI1P; ribosome recycli 89.2 0.42 1.4E-05 55.5 6.5 112 175-287 379-542 (608)
433 2dyk_A GTP-binding protein; GT 89.2 0.22 7.4E-06 46.4 3.4 23 175-197 2-24 (161)
434 2qmh_A HPR kinase/phosphorylas 89.2 0.19 6.4E-06 49.1 2.9 24 175-198 35-58 (205)
435 1oix_A RAS-related protein RAB 89.2 0.23 7.7E-06 48.3 3.6 24 174-197 29-52 (191)
436 3bk7_A ABC transporter ATP-bin 89.1 2.1 7.3E-05 49.6 12.3 112 175-287 383-546 (607)
437 1xp8_A RECA protein, recombina 89.1 0.59 2E-05 50.6 7.2 54 156-209 55-109 (366)
438 2ocp_A DGK, deoxyguanosine kin 89.1 0.24 8.2E-06 50.3 3.9 25 175-199 3-27 (241)
439 3oaa_A ATP synthase subunit al 89.1 0.66 2.3E-05 51.6 7.5 82 175-260 163-264 (513)
440 3tif_A Uncharacterized ABC tra 89.0 0.18 6.2E-06 51.1 2.8 34 175-209 32-65 (235)
441 1ls1_A Signal recognition part 89.0 0.31 1.1E-05 51.2 4.7 36 173-209 97-132 (295)
442 3eph_A TRNA isopentenyltransfe 88.9 0.24 8.1E-06 54.0 3.8 25 175-199 3-27 (409)
443 3gqb_B V-type ATP synthase bet 88.9 0.57 2E-05 51.7 6.9 24 176-199 149-172 (464)
444 1ypw_A Transitional endoplasmi 88.9 0.14 4.7E-06 61.9 2.2 52 151-202 477-539 (806)
445 2p67_A LAO/AO transport system 88.9 0.46 1.6E-05 51.0 6.2 28 172-199 54-81 (341)
446 2j37_W Signal recognition part 88.9 0.44 1.5E-05 53.8 6.1 29 172-200 99-127 (504)
447 2ck3_A ATP synthase subunit al 88.7 0.66 2.3E-05 51.9 7.3 84 175-260 163-272 (510)
448 1cp2_A CP2, nitrogenase iron p 88.7 0.4 1.4E-05 49.4 5.3 27 175-201 2-28 (269)
449 3gmt_A Adenylate kinase; ssgci 88.6 0.22 7.5E-06 50.0 3.1 24 175-198 9-32 (230)
450 2cbz_A Multidrug resistance-as 88.6 0.18 6.2E-06 51.2 2.5 24 175-198 32-55 (237)
451 2h92_A Cytidylate kinase; ross 88.5 0.2 6.7E-06 49.9 2.7 25 175-199 4-28 (219)
452 2qi9_C Vitamin B12 import ATP- 88.5 0.21 7.3E-06 51.0 3.0 33 175-209 27-59 (249)
453 2qe7_A ATP synthase subunit al 88.5 0.85 2.9E-05 50.9 7.9 82 175-260 163-264 (502)
454 2d2e_A SUFC protein; ABC-ATPas 88.4 0.22 7.4E-06 51.0 3.0 34 175-208 30-64 (250)
455 3gfo_A Cobalt import ATP-bindi 88.3 0.21 7.2E-06 51.9 2.8 33 175-208 35-67 (275)
456 3end_A Light-independent proto 88.3 0.36 1.2E-05 50.9 4.7 30 172-201 39-68 (307)
457 1b0u_A Histidine permease; ABC 88.3 0.19 6.6E-06 51.8 2.5 33 175-208 33-65 (262)
458 2wji_A Ferrous iron transport 88.3 0.26 8.8E-06 46.5 3.2 22 175-196 4-25 (165)
459 2axn_A 6-phosphofructo-2-kinas 88.3 0.35 1.2E-05 55.1 4.9 30 173-202 34-63 (520)
460 2f9l_A RAB11B, member RAS onco 88.2 0.22 7.6E-06 48.7 2.8 24 174-197 5-28 (199)
461 2ce2_X GTPase HRAS; signaling 88.2 0.25 8.6E-06 46.0 3.1 21 176-196 5-25 (166)
462 2zu0_C Probable ATP-dependent 88.2 0.23 7.8E-06 51.4 3.0 35 175-209 47-82 (267)
463 1ny5_A Transcriptional regulat 88.2 0.65 2.2E-05 50.8 6.8 45 152-197 138-183 (387)
464 1ji0_A ABC transporter; ATP bi 88.1 0.2 6.9E-06 50.9 2.5 33 175-208 33-65 (240)
465 2orw_A Thymidine kinase; TMTK, 88.0 0.38 1.3E-05 46.6 4.3 24 175-198 4-27 (184)
466 4edh_A DTMP kinase, thymidylat 88.0 0.73 2.5E-05 45.8 6.4 27 175-201 7-33 (213)
467 1mv5_A LMRA, multidrug resista 88.0 0.22 7.6E-06 50.7 2.7 24 175-198 29-52 (243)
468 2zts_A Putative uncharacterize 88.0 0.45 1.5E-05 48.1 5.1 35 175-209 31-66 (251)
469 2v9p_A Replication protein E1; 87.9 0.26 8.7E-06 51.9 3.2 26 173-198 125-150 (305)
470 1g6h_A High-affinity branched- 87.9 0.21 7.1E-06 51.4 2.5 33 175-208 34-66 (257)
471 2olj_A Amino acid ABC transpor 87.9 0.21 7.2E-06 51.5 2.5 33 175-208 51-83 (263)
472 2ged_A SR-beta, signal recogni 87.9 0.34 1.2E-05 46.8 3.9 25 173-197 47-71 (193)
473 2r8r_A Sensor protein; KDPD, P 87.9 0.36 1.2E-05 48.2 4.1 30 176-205 8-38 (228)
474 2pze_A Cystic fibrosis transme 87.9 0.21 7.3E-06 50.3 2.5 24 175-198 35-58 (229)
475 1sgw_A Putative ABC transporte 87.8 0.18 6.2E-06 50.2 1.9 33 175-208 36-68 (214)
476 2ff7_A Alpha-hemolysin translo 87.7 0.22 7.4E-06 50.9 2.5 33 175-208 36-68 (247)
477 2r9v_A ATP synthase subunit al 87.7 0.77 2.6E-05 51.3 7.0 82 175-260 176-277 (515)
478 2i1q_A DNA repair and recombin 87.7 0.77 2.6E-05 48.8 6.9 39 160-198 84-122 (322)
479 2afh_E Nitrogenase iron protei 87.6 0.45 1.5E-05 49.6 5.0 27 174-200 2-28 (289)
480 1z2a_A RAS-related protein RAB 87.6 0.34 1.2E-05 45.3 3.7 23 174-196 5-27 (168)
481 1vpl_A ABC transporter, ATP-bi 87.6 0.23 7.7E-06 51.1 2.5 33 175-208 42-74 (256)
482 2zej_A Dardarin, leucine-rich 87.6 0.23 8E-06 47.8 2.5 21 176-196 4-24 (184)
483 4hlc_A DTMP kinase, thymidylat 87.5 0.45 1.5E-05 47.0 4.6 30 175-204 3-32 (205)
484 2ghi_A Transport protein; mult 87.5 0.23 7.8E-06 51.2 2.5 33 175-209 47-79 (260)
485 1pzn_A RAD51, DNA repair and r 87.4 0.35 1.2E-05 52.1 4.0 37 162-198 119-155 (349)
486 3con_A GTPase NRAS; structural 87.4 0.28 9.4E-06 47.3 2.9 23 175-197 22-44 (190)
487 2wjg_A FEOB, ferrous iron tran 87.3 0.33 1.1E-05 46.7 3.3 23 174-196 7-29 (188)
488 2ixe_A Antigen peptide transpo 87.2 0.24 8.2E-06 51.4 2.5 33 175-208 46-78 (271)
489 1g8f_A Sulfate adenylyltransfe 87.2 0.28 9.5E-06 55.5 3.2 28 173-200 394-421 (511)
490 3ea0_A ATPase, para family; al 87.2 0.61 2.1E-05 47.1 5.5 29 173-201 3-32 (245)
491 2yz2_A Putative ABC transporte 87.1 0.25 8.4E-06 51.1 2.5 33 175-208 34-66 (266)
492 2qm8_A GTPase/ATPase; G protei 87.1 0.67 2.3E-05 49.6 6.0 28 172-199 53-80 (337)
493 2nq2_C Hypothetical ABC transp 87.1 0.25 8.6E-06 50.6 2.5 24 175-198 32-55 (253)
494 3thx_A DNA mismatch repair pro 87.0 1.3 4.4E-05 54.0 9.0 23 173-195 661-683 (934)
495 2ihy_A ABC transporter, ATP-bi 87.0 0.25 8.6E-06 51.4 2.5 33 175-208 48-80 (279)
496 1fx0_A ATP synthase alpha chai 87.0 0.79 2.7E-05 51.2 6.5 36 175-212 164-200 (507)
497 3kta_A Chromosome segregation 86.9 0.34 1.2E-05 46.6 3.2 23 176-198 28-50 (182)
498 1fzq_A ADP-ribosylation factor 86.9 0.47 1.6E-05 45.4 4.3 26 172-197 14-39 (181)
499 3sop_A Neuronal-specific septi 86.8 0.35 1.2E-05 50.1 3.4 23 176-198 4-26 (270)
500 1m7b_A RND3/RHOE small GTP-bin 86.8 0.33 1.1E-05 46.6 3.1 23 174-196 7-29 (184)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.8e-40 Score=387.52 Aligned_cols=272 Identities=16% Similarity=0.154 Sum_probs=222.3
Q ss_pred eeccccHHHHHHhhccC-CCCeEEEEEEecCCchHHHHHHHHHH----hhcCccCceEEEEeehhhhcc--CCHHHHHHH
Q 040255 154 VGVECSIEEIESLLCIG-SEGVCKLRIWGIGGISKITIAGAVFN----KISRHFEGSYFALNVREAEET--GGIKDLQKK 226 (869)
Q Consensus 154 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~s~~--~~~~~l~~~ 226 (869)
|||+.++++|.++|..+ ..++++|+|+||||+||||||+++|+ +++.+|++++|++ ++.. +++..+++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 59999999999999754 34689999999999999999999996 7899999999996 3433 478899999
Q ss_pred HHHHhhcCCC-----C--CC-----HHHHHHHHccC-ceEEEecCCC----------CCcEEEEEeCchhhhhhcC-CCe
Q 040255 227 LLSELSKDGN-----M--RN-----IESQLNRLARK-KVRIVFDDVT----------SGSRVIITTRDKQVLKNCW-ANK 282 (869)
Q Consensus 227 il~~l~~~~~-----~--~~-----~~~l~~~L~~k-r~LlVLDDv~----------~gsrIivTTR~~~v~~~~~-~~~ 282 (869)
++.+++.... . .. ...+++.|+++ |+|||||||| +||+||||||++.++..++ ...
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCe
Confidence 9999885421 1 11 57788899996 9999999999 7999999999999998876 446
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHHHH-HhcCCCchhh
Q 040255 283 KYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAMRK-LEIIPHVEIE 361 (869)
Q Consensus 283 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~-l~~~~~~~i~ 361 (869)
+|+|++|+.+||++||.++||.... .+.+++++.+|+++|+|+||||+++|+.|+.+. .+|...+.. +...+...+.
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~ 364 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVE 364 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTC
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHH
Confidence 8999999999999999999987543 467888999999999999999999999998774 233333332 3333566799
Q ss_pred hHHHhhhccCcHHHHHHHh-----------hcccccCCCCHH----------------------HHHHHHhh--cCcceE
Q 040255 362 EVLKISYDSLDDSQKNVFL-----------DIACFLEGEHRD----------------------EVISIFDA--SKSLIN 406 (869)
Q Consensus 362 ~~L~~Sy~~L~~~~k~~fl-----------~~a~F~~~~~~~----------------------~l~~~~~~--~~sLi~ 406 (869)
.+|++||+.||++.|.||+ |||+||+++.++ .+...+.. ++||++
T Consensus 365 ~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~ 444 (549)
T 2a5y_B 365 CITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALL 444 (549)
T ss_dssp CCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCS
T ss_pred HHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCee
Confidence 9999999999999999999 999999987643 11112222 789988
Q ss_pred ecc---CCeEEecHHHHHHhHhhhhccc
Q 040255 407 LDL---FYRIRMHDLLRDMGREIVRKES 431 (869)
Q Consensus 407 ~~~---~~~~~mHdll~~~~~~i~~~e~ 431 (869)
... ..+|+|||+||++|++++.+++
T Consensus 445 ~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 445 SGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp EEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred EecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 753 3579999999999999998775
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.1e-40 Score=318.68 Aligned_cols=145 Identities=44% Similarity=0.686 Sum_probs=122.5
Q ss_pred CCcEEEccccccccCchhHHHHHHHccCCceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccccccc--------
Q 040255 1 MYDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW-------- 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w-------- 71 (869)
+|||||||||+|||++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||+|||+|.|
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i 87 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTI 87 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHH
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHH
Confidence 599999999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred -------------eEeeeccccccccccchhHHhHHHHhcch-hhHHhHHHHHHHHHhhcCCCcccccchhhhHhHHHHH
Q 040255 72 -------------FFYRVDPSHVRKQSHSFGRHFSRLRKRFP-EKMKRWKNALTEAADLSGFDSNVIRPESKLIEEIAND 137 (869)
Q Consensus 72 -------------vfy~vdp~~vr~q~g~~~~~~~~~~~~~~-~~i~~wr~al~~~~~~~g~~~~~~~~e~~~i~~i~~~ 137 (869)
|||+|||++||+|+|+|+++|.+|+.+.. +++++||.||++||+++||++. ++|+++|++||++
T Consensus 88 ~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~Iv~~ 165 (176)
T 3jrn_A 88 MDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANE 165 (176)
T ss_dssp HHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHHHHHH
T ss_pred HhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHHHHHH
Confidence 99999999999999999999999998744 8999999999999999999984 6799999999999
Q ss_pred HHhhcccccc
Q 040255 138 VLKRLDATFQ 147 (869)
Q Consensus 138 v~~~l~~~~~ 147 (869)
|.++++.++|
T Consensus 166 v~~~l~~~~~ 175 (176)
T 3jrn_A 166 ISNKKTIYAT 175 (176)
T ss_dssp HHTTCC----
T ss_pred HHHHhcCCCC
Confidence 9999988764
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.5e-39 Score=318.30 Aligned_cols=144 Identities=37% Similarity=0.701 Sum_probs=139.5
Q ss_pred CCcEEEccccccccCchhHHHHHHHccCCceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccccccc--------
Q 040255 1 MYDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW-------- 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w-------- 71 (869)
+|||||||||+|+|++|++||+.+|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||+|||+|.|
T Consensus 35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I 114 (204)
T 3ozi_A 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEI 114 (204)
T ss_dssp CCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHH
T ss_pred CCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHH
Confidence 599999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred --------------eEeeeccccccccccchhHHhHHHHhcch-hhHHhHHHHHHHHHhhcCCCcccccchhhhHhHHHH
Q 040255 72 --------------FFYRVDPSHVRKQSHSFGRHFSRLRKRFP-EKMKRWKNALTEAADLSGFDSNVIRPESKLIEEIAN 136 (869)
Q Consensus 72 --------------vfy~vdp~~vr~q~g~~~~~~~~~~~~~~-~~i~~wr~al~~~~~~~g~~~~~~~~e~~~i~~i~~ 136 (869)
|||+|||++||+|+|.|+++|++|+.++. +++++||.||++||+++||++.+..+|++++++|+.
T Consensus 115 ~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~ 194 (204)
T 3ozi_A 115 VRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSA 194 (204)
T ss_dssp HHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHH
Confidence 99999999999999999999999998876 799999999999999999999988999999999999
Q ss_pred HHHhhccc
Q 040255 137 DVLKRLDA 144 (869)
Q Consensus 137 ~v~~~l~~ 144 (869)
+|+++++.
T Consensus 195 di~~kl~~ 202 (204)
T 3ozi_A 195 DIWSHISK 202 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99998764
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.1e-34 Score=371.74 Aligned_cols=279 Identities=19% Similarity=0.256 Sum_probs=221.2
Q ss_pred ccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh---hcCccCceE-EEEeehhhhccCCHH
Q 040255 146 FQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK---ISRHFEGSY-FALNVREAEETGGIK 221 (869)
Q Consensus 146 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~-~~~~~~~~s~~~~~~ 221 (869)
.|...+.||||++++++|.++|...++++++|+|+||||+||||||+++|++ ...+|...+ |+. ++... .....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHHH
Confidence 5666778999999999999999877778999999999999999999999985 456676555 665 32211 12334
Q ss_pred HHHHHHHHHhhcCCC-----CCC----HHHHHHHHccC--ceEEEecCCC---------CCcEEEEEeCchhhhhh-cCC
Q 040255 222 DLQKKLLSELSKDGN-----MRN----IESQLNRLARK--KVRIVFDDVT---------SGSRVIITTRDKQVLKN-CWA 280 (869)
Q Consensus 222 ~l~~~il~~l~~~~~-----~~~----~~~l~~~L~~k--r~LlVLDDv~---------~gsrIivTTR~~~v~~~-~~~ 280 (869)
.....++..+..... ..+ .+.++..+.++ |+|||||||| +||+||||||++.++.. .+.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCC
Confidence 445566666653321 112 34445555555 9999999999 89999999999999854 456
Q ss_pred CeEEEeCC-CCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHHHHHhcCCC--
Q 040255 281 NKKYRMKE-LVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAMRKLEIIPH-- 357 (869)
Q Consensus 281 ~~~~~l~~-L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~~~~-- 357 (869)
...++++. |+.+||++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.+. ..|+..++++.....
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhh
Confidence 67899996 99999999999998543 234556799999999999999999999998765 479999998865431
Q ss_pred ---------chhhhHHHhhhccCcHHHHHHHhhcccccCCC--CHHHHHHHHhh-------------cCcceEeccCC--
Q 040255 358 ---------VEIEEVLKISYDSLDDSQKNVFLDIACFLEGE--HRDEVISIFDA-------------SKSLINLDLFY-- 411 (869)
Q Consensus 358 ---------~~i~~~L~~Sy~~L~~~~k~~fl~~a~F~~~~--~~~~l~~~~~~-------------~~sLi~~~~~~-- 411 (869)
..+..+|++||+.|++++|.||++||+||+++ +.+.+..+|.. ++||++....+
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~ 432 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKS 432 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSS
T ss_pred cccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCc
Confidence 35899999999999999999999999999986 46777887763 89999987655
Q ss_pred -eEEecHHHHHHhHhhhhcc
Q 040255 412 -RIRMHDLLRDMGREIVRKE 430 (869)
Q Consensus 412 -~~~mHdll~~~~~~i~~~e 430 (869)
+|+||+++|+++++...++
T Consensus 433 ~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 433 FCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEECCHHHHHHHHHHTGGG
T ss_pred eEEEecHHHHHHHHhhhhHH
Confidence 4999999999999987665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.2e-34 Score=343.57 Aligned_cols=252 Identities=15% Similarity=0.128 Sum_probs=197.7
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHH--hhcCccCc-eEEEEeehhhhccCCHHHHHHHH
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFN--KISRHFEG-SYFALNVREAEETGGIKDLQKKL 227 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~-~~~~~~~~~~s~~~~~~~l~~~i 227 (869)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++...+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHH
Confidence 34599999999999999753 3589999999999999999999997 57889997 77877 45556666776666
Q ss_pred HHHhhcC------CCC----C--C----HHHHHHHH---ccCceEEEecCCC---------CCcEEEEEeCchhhhhhcC
Q 040255 228 LSELSKD------GNM----R--N----IESQLNRL---ARKKVRIVFDDVT---------SGSRVIITTRDKQVLKNCW 279 (869)
Q Consensus 228 l~~l~~~------~~~----~--~----~~~l~~~L---~~kr~LlVLDDv~---------~gsrIivTTR~~~v~~~~~ 279 (869)
+..+... ... . + .+.+++.| .+||+|||||||| +|||||||||++.++..+.
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHH
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcC
Confidence 6543311 111 0 1 34455555 5799999999999 8999999999999886544
Q ss_pred CCeEEEeC------CCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCC--CHHHHHHHHHH
Q 040255 280 ANKKYRMK------ELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGR--SKEVWESAMRK 351 (869)
Q Consensus 280 ~~~~~~l~------~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~--~~~~w~~~l~~ 351 (869)
....|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +.++|+..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 33467777 999999999999984 322 22333443 999999999999999876 77889763
Q ss_pred HhcCCCchhhhHHHhhhccCcHHH-HHHHhhcccccCCCC--HHHHHHHHhh--------------cCcceEecc-CCeE
Q 040255 352 LEIIPHVEIEEVLKISYDSLDDSQ-KNVFLDIACFLEGEH--RDEVISIFDA--------------SKSLINLDL-FYRI 413 (869)
Q Consensus 352 l~~~~~~~i~~~L~~Sy~~L~~~~-k~~fl~~a~F~~~~~--~~~l~~~~~~--------------~~sLi~~~~-~~~~ 413 (869)
....+..+|++||+.||+++ |+||++||+||+++. .+.+..+|.+ ++||++.+. ..+|
T Consensus 351 ----~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rY 426 (1221)
T 1vt4_I 351 ----NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426 (1221)
T ss_dssp ----SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEE
T ss_pred ----ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEE
Confidence 35689999999999999999 999999999999865 4667777752 899998863 5789
Q ss_pred EecHHHHHHh
Q 040255 414 RMHDLLRDMG 423 (869)
Q Consensus 414 ~mHdll~~~~ 423 (869)
+||||+++++
T Consensus 427 rMHDLllELr 436 (1221)
T 1vt4_I 427 SIPSIYLELK 436 (1221)
T ss_dssp BCCCHHHHHH
T ss_pred EehHHHHHHh
Confidence 9999998865
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=322.41 Aligned_cols=312 Identities=20% Similarity=0.261 Sum_probs=230.1
Q ss_pred cccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh---cCccC-ceEEEEeehhhhccCCH
Q 040255 145 TFQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI---SRHFE-GSYFALNVREAEETGGI 220 (869)
Q Consensus 145 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~F~-~~~~~~~~~~~s~~~~~ 220 (869)
..|..++.||||+.++++|.++|....++.++|+|+||||+||||||+++|++. ..+|+ .++|+.. +.. +.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~-~~~----~~ 192 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GKQ----DK 192 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE-ESC----CH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC-CCC----ch
Confidence 345667889999999999999998656678999999999999999999999853 77895 6778763 221 22
Q ss_pred HHHHHH---HHHHhhcCC-----CCCC----HHHHHHHHcc--CceEEEecCCC---------CCcEEEEEeCchhhhhh
Q 040255 221 KDLQKK---LLSELSKDG-----NMRN----IESQLNRLAR--KKVRIVFDDVT---------SGSRVIITTRDKQVLKN 277 (869)
Q Consensus 221 ~~l~~~---il~~l~~~~-----~~~~----~~~l~~~L~~--kr~LlVLDDv~---------~gsrIivTTR~~~v~~~ 277 (869)
..+... +...+.... ...+ ...+++.+.+ +++|||||||| +|++||||||++.++..
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTT
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHh
Confidence 233333 333443211 1112 4455666655 79999999998 89999999999998876
Q ss_pred cCCCeEEEe---CCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcCCCHHHHHHHHHHHhc
Q 040255 278 CWANKKYRM---KELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCGRSKEVWESAMRKLEI 354 (869)
Q Consensus 278 ~~~~~~~~l---~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~~~~~~w~~~l~~l~~ 354 (869)
+. ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++.+. ..|+..++.+..
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~ 347 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQN 347 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHS
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 54 345666 4899999999999998642 223346789999999999999999999998653 369999988875
Q ss_pred CC-----------CchhhhHHHhhhccCcHHHHHHHhhcccccCCCC--HHHHHHHHhh-------------cCcceEec
Q 040255 355 IP-----------HVEIEEVLKISYDSLDDSQKNVFLDIACFLEGEH--RDEVISIFDA-------------SKSLINLD 408 (869)
Q Consensus 355 ~~-----------~~~i~~~L~~Sy~~L~~~~k~~fl~~a~F~~~~~--~~~l~~~~~~-------------~~sLi~~~ 408 (869)
.. ...+..++..||+.||++.|.||+++||||++.. .+.+..+|.. +++|+...
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~ 427 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCD 427 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEE
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEe
Confidence 43 2468999999999999999999999999998754 5666776643 78999865
Q ss_pred cC---CeEEecHHHHHHhHhhhhcc-------------------ccCCCCCcceecchhhHHHHHhhcCCcceeeccccc
Q 040255 409 LF---YRIRMHDLLRDMGREIVRKE-------------------SINHPGKRNRLWHHKDIYQVLKKNTGTEAIEGISLD 466 (869)
Q Consensus 409 ~~---~~~~mHdll~~~~~~i~~~e-------------------~~~~~~~~~~l~~~~~~~~vl~~~~~~~~v~~i~l~ 466 (869)
.. ..|+||+++|+++++....+ ....++.+.++|..+.+++++..+... .+..+..+
T Consensus 428 ~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~-~~~~l~~~ 506 (591)
T 1z6t_A 428 RNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHK-ELCALMFS 506 (591)
T ss_dssp EETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHH-HHHHHHSC
T ss_pred cCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHH-HHHHHHhC
Confidence 42 37999999999998773211 012234555677777888887766543 34444444
Q ss_pred c
Q 040255 467 M 467 (869)
Q Consensus 467 ~ 467 (869)
+
T Consensus 507 ~ 507 (591)
T 1z6t_A 507 L 507 (591)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.84 E-value=2.3e-22 Score=193.74 Aligned_cols=95 Identities=23% Similarity=0.418 Sum_probs=90.6
Q ss_pred CCcEEEccccccccCchhHHHHHHHccCCceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccccccc--------
Q 040255 1 MYDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW-------- 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w-------- 71 (869)
+|||||||+|+| |+.|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|+|++|++|.|
T Consensus 20 ~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~ 98 (154)
T 3h16_A 20 PHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGL 98 (154)
T ss_dssp SEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHH
T ss_pred CceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHH
Confidence 599999999999 77899999999999999999999 89999999999999999999999999999999999
Q ss_pred -------------eEeeeccccccccccchhHHhHHHH
Q 040255 72 -------------FFYRVDPSHVRKQSHSFGRHFSRLR 96 (869)
Q Consensus 72 -------------vfy~vdp~~vr~q~g~~~~~~~~~~ 96 (869)
|||+|+|++||+|.|.|+++++...
T Consensus 99 ~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 99 FQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp TCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 9999999999999999999886543
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=6.1e-21 Score=208.85 Aligned_cols=188 Identities=24% Similarity=0.360 Sum_probs=106.2
Q ss_pred CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCCccCCCCC
Q 040255 485 PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKT 561 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~ 561 (869)
++++.|+++++....+|..+..++ +|++|++++|.+..+ ...+.+|++|+|++|.++ .+|..+.++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~--~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-------~lp~~l~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLS--HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-------ALPASIASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGT--TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-------CCCGGGGGCTT
T ss_pred cceeEEEccCCCchhcChhhhhCC--CCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-------cCcHHHhcCcC
Confidence 445555555544445555444443 555555555555444 334555555555555554 23445555556
Q ss_pred ccEEEecCCCCCcccCcc------------ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCC
Q 040255 562 PITFEIIDCKMLERLPDE------------LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSK 629 (869)
Q Consensus 562 L~~L~L~~~~~l~~lp~~------------l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~ 629 (869)
|++|+|++|..++.+|.. +++|++|+|++|.++.+|..++++++|++|+|++| .+..+|..++.+++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPK 230 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTT
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCC
Confidence 666666665555555542 45566666666666666666666666666666666 55556655666666
Q ss_pred CCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccC
Q 040255 630 LTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 630 L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
|+.|+|++|+..+.+|.. +++|+.|++++|+.++.+|..+.++++|+.|++++
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 666666666655555553 34555666666655666665566666666666555
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.4e-20 Score=205.93 Aligned_cols=212 Identities=17% Similarity=0.265 Sum_probs=183.0
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---cccccccee
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVS 534 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~ 534 (869)
..++.+.+..+... .+ |..+.++++|++|++++|....+|..+..++ +|++|++++|.+..+ ...+.+|++
T Consensus 81 ~~l~~L~L~~n~l~---~l-p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~--~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLP---QF-PDQAFRLSHLQHMTIDAAGLMELPDTMQQFA--GLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCS---SC-CSCGGGGTTCSEEEEESSCCCCCCSCGGGGT--TCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCch---hc-ChhhhhCCCCCEEECCCCCccchhHHHhccC--CCCEEECCCCccccCcHHHhcCcCCCE
Confidence 34555555444432 33 4457789999999999988888898888887 999999999999877 567889999
Q ss_pred eecCCCcccccccccccCCCccC---------CCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCC
Q 040255 535 LKMPCTKVEQLWDDVQRLPSSLC---------TFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGR 602 (869)
Q Consensus 535 L~L~~n~l~~l~~~~~~lp~~~~---------~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~ 602 (869)
|++++|++. +.+|..+. ++++|++|+|++|. +..+|.. +++|++|+|++|.++.+|..++.
T Consensus 155 L~L~~n~~~------~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 155 LSIRACPEL------TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp EEEEEETTC------CCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred EECCCCCCc------cccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 999997654 34555544 59999999999997 7799986 88999999999999999999999
Q ss_pred ccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEe
Q 040255 603 LSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVN 679 (869)
Q Consensus 603 l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~ 679 (869)
+++|++|+|++|...+.+|..++.+++|+.|+|++|+.++.+|.. +++|+.|++++|+.++.+|..+.++++|+.++
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 999999999999888999999999999999999999999999975 67899999999999999999999999999998
Q ss_pred ccC
Q 040255 680 LCN 682 (869)
Q Consensus 680 l~~ 682 (869)
+..
T Consensus 308 l~~ 310 (328)
T 4fcg_A 308 VPP 310 (328)
T ss_dssp CCG
T ss_pred CCH
Confidence 765
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=9e-20 Score=198.21 Aligned_cols=248 Identities=15% Similarity=0.201 Sum_probs=196.9
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcC-CC-CccccCcCCCCCCCCeeEEecCCCCCCcc----cccccc
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYG-DK-NKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEK 531 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~-~~-~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~ 531 (869)
..++.+.+..+...+ ....+..|.++++|++|++++ |. ...+|..+..++ +|++|++++|.+... ...+.+
T Consensus 50 ~~l~~L~L~~~~l~~-~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK-PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS-CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccC-CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC--CCCEEECcCCeeCCcCCHHHhCCCC
Confidence 467776666555431 113467899999999999984 44 346787888886 999999999998743 567899
Q ss_pred ceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---cc-ccchhcccccccc-cCCCCcCCcccc
Q 040255 532 LVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LE-NLEYLTVKGTTIR-ELPESLGRLSWV 606 (869)
Q Consensus 532 L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~-~L~~L~L~~n~i~-~lP~~i~~l~~L 606 (869)
|++|++++|.++ +.+|..+.++++|++|+|++|...+.+|.. ++ +|++|+|++|.++ .+|..++.++ |
T Consensus 127 L~~L~Ls~N~l~------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 127 LVTLDFSYNALS------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp CCEEECCSSEEE------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred CCEEeCCCCccC------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 999999999987 467788999999999999999855588876 55 8999999999999 8899999997 9
Q ss_pred ceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 607 KRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 607 ~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
+.|+|++|...+.+|..+..+++|+.|+|++|...+.+|.. +++|+.|++++|...+.+|..+.++++|+.|++++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N- 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN- 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-
Confidence 99999999444467778999999999999998876666653 689999999998766689999999999999999984
Q ss_pred CCCchhhhhhhhccccccccccccCCceeeecCCCCCC
Q 040255 685 KLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIP 722 (869)
Q Consensus 685 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP 722 (869)
.+.+.++.. ..++.++.+++..|..+.|..+|
T Consensus 279 -----~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 279 -----NLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp -----EEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred -----cccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 454444443 44566777777766655565444
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=2.6e-19 Score=218.65 Aligned_cols=136 Identities=20% Similarity=0.228 Sum_probs=63.1
Q ss_pred ccccccCCcceEEEEcCCCCc-cccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccC
Q 040255 478 SYAFSKMPKLRFLRFYGDKNK-CMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRL 552 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~-~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~l 552 (869)
+..|.++++|+.|++++|... .+|..+..++ +|+.|++++|.+... ...+.+|+.|++++|+++ +.+
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~------~~~ 482 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS--KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT------GEI 482 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC------SCC
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCC--CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc------CcC
Confidence 344445555555555444322 3333444443 455555555544422 223444555555555444 234
Q ss_pred CCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccc-cCCCCcCCccccceecccccccccccC
Q 040255 553 PSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIR-ELPESLGRLSWVKRLILSNNSNLERIP 621 (869)
Q Consensus 553 p~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP 621 (869)
|..+.++++|++|+|++|...+.+|.. +++|++|+|++|.++ .+|..++.+++|+.|+|++|+..+.+|
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 444445555555555555433344443 444555555555554 445555555555555555553333344
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=3.3e-19 Score=217.80 Aligned_cols=230 Identities=20% Similarity=0.209 Sum_probs=174.1
Q ss_pred CCcceEEEEcCCCCc-cccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 484 MPKLRFLRFYGDKNK-CMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 484 l~~Lr~L~l~~~~~~-~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
+++|+.|++++|... .+|..+..++ +|+.|++++|.+... ...+.+|+.|++++|.++ +.+|..+..
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~------~~~p~~~~~ 464 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCS--ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE------GEIPQELMY 464 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCT--TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC------SCCCGGGGG
T ss_pred cCCccEEECCCCccccccCHHHhcCC--CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc------CcCCHHHcC
Confidence 566777777665443 4555566555 777777777766533 445667777777777765 456777888
Q ss_pred CCCccEEEecCCCCCcccCcc---ccccchhcccccccc-cCCCCcCCccccceecccccccccccCccccCCCCCCEEe
Q 040255 559 FKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIR-ELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLF 634 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~ 634 (869)
+++|++|+|++|...+.+|.. +++|++|+|++|.++ .+|.+++.+++|++|+|++|...+.+|..++.+++|+.|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 889999999998866677776 788899999999988 7788899999999999999955568888899999999999
Q ss_pred cCCCCCCcccCCC-------------------------------------------------------------------
Q 040255 635 ISHCERLQTLPEL------------------------------------------------------------------- 647 (869)
Q Consensus 635 L~~c~~l~~lp~~------------------------------------------------------------------- 647 (869)
|++|+..+.+|..
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 9988777666642
Q ss_pred ------CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCceeeecCCCCC
Q 040255 648 ------PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEI 721 (869)
Q Consensus 648 ------~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~i 721 (869)
+++|+.|++++|...+.+|..+++++.|+.|++++ |.+++.+|..+..++.++.++++.|.+ .+.|
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l~g~ip~~l~~L~~L~~LdLs~N~l--~g~i 696 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH------NDISGSIPDEVGDLRGLNILDLSSNKL--DGRI 696 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS------SCCCSCCCGGGGGCTTCCEEECCSSCC--EECC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC------CccCCCCChHHhCCCCCCEEECCCCcc--cCcC
Confidence 13567788888776778888888888888888887 455556666667778888888888877 6788
Q ss_pred CcccccCC
Q 040255 722 PKWFRHQS 729 (869)
Q Consensus 722 P~w~~~~~ 729 (869)
|..|..-.
T Consensus 697 p~~l~~l~ 704 (768)
T 3rgz_A 697 PQAMSALT 704 (768)
T ss_dssp CGGGGGCC
T ss_pred ChHHhCCC
Confidence 88876554
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=8.7e-18 Score=193.71 Aligned_cols=197 Identities=24% Similarity=0.322 Sum_probs=115.0
Q ss_pred eecccccccCCcceEEEEcCCCCccc-cCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCccccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNKCM-VSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~~~-~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~ 549 (869)
.+.+..|.++++|+.|++++|....+ |..+..++ +|++|++++|.++.+ +..+.+|+.|+|++|+++.+
T Consensus 46 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~---- 119 (477)
T 2id5_A 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF--NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL---- 119 (477)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE----
T ss_pred eECHhHccCCCCCCEEECCCCccCEeChhhhhCCc--cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC----
Confidence 45667778888888888877665555 44566665 788888888877766 34567788888888777633
Q ss_pred ccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCC-CcCCccccceecccccccccccCc-c
Q 040255 550 QRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPE-SLGRLSWVKRLILSNNSNLERIPE-S 623 (869)
Q Consensus 550 ~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~lP~-~ 623 (869)
.|..+.++++|+.|+|++|. +..++.. +++|++|+|++|.++.+|. .+.++++|+.|+|++| .+..++. .
T Consensus 120 --~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~ 195 (477)
T 2id5_A 120 --LDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYS 195 (477)
T ss_dssp --CTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTC
T ss_pred --ChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhh
Confidence 33445566666666666665 3333322 5566666666666665543 3555666666666666 4444433 3
Q ss_pred ccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccC-CCCCCccceEEeccC
Q 040255 624 IRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCN 682 (869)
Q Consensus 624 i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~ 682 (869)
+..+++|+.|++++|+.++.+|.. ..+|+.|++++| .+..+|. .+.++++|+.|++++
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCS
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCC
Confidence 555666666666655555555543 124555555443 2333432 334444444444444
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=186.23 Aligned_cols=215 Identities=20% Similarity=0.235 Sum_probs=174.6
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
.++.+.+..++ ...+.+..|.++++|+.|++++|....++. .+..++ +|++|++++|.++.+ +..+.+|+
T Consensus 65 ~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 65 NTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA--NLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TCSEEECCSCC---CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS--SCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCcEEEccCCc---CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc--cCCEEECCCCcCCeeCHhHhhccccCc
Confidence 34444444444 345677899999999999999987777664 566666 999999999999887 45689999
Q ss_pred eeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCCcCCcccccee
Q 040255 534 SLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPESLGRLSWVKRL 609 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L 609 (869)
+|+|++|.++.+. +..+.++++|+.|+|++|..+..+|.. +++|++|+|++|.++.+| .+..+++|+.|
T Consensus 140 ~L~L~~N~i~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 140 ELWLRNNPIESIP------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDEL 212 (440)
T ss_dssp EEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEE
T ss_pred eeeCCCCcccccC------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEE
Confidence 9999999987442 336888999999999998889998875 889999999999999998 48999999999
Q ss_pred ccccccccccc-CccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccC-CCCCCccceEEeccCCC
Q 040255 610 ILSNNSNLERI-PESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 610 ~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~ 684 (869)
+|++| .+..+ |..+..+++|+.|+|++|......|.. +++|+.|++++| .+..+|. .+..+++|+.+++++|+
T Consensus 213 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 213 DLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 99999 67666 667999999999999996544433433 578999999996 5667765 57889999999999876
Q ss_pred CCC
Q 040255 685 KLD 687 (869)
Q Consensus 685 ~~~ 687 (869)
-..
T Consensus 291 ~~C 293 (440)
T 3zyj_A 291 WNC 293 (440)
T ss_dssp EEC
T ss_pred ccC
Confidence 544
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=4e-18 Score=203.55 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=112.6
Q ss_pred ccCcCCCCCCCCeeEEecCCCCCCc------------------c---cc--ccccceeeecCCCcccccccccccCCCcc
Q 040255 500 MVSHLEGVPFAEVRHLEWPQCPLKT------------------L---NI--CAEKLVSLKMPCTKVEQLWDDVQRLPSSL 556 (869)
Q Consensus 500 ~~~~l~~l~~~~L~~L~l~~~~l~~------------------l---~~--~~~~L~~L~L~~n~l~~l~~~~~~lp~~~ 556 (869)
+|..+..++ +|++|++++|.+.. + .. .+.+|++|+|++|++. +.+|..+
T Consensus 198 ip~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~------~~~p~~l 269 (636)
T 4eco_A 198 VSKAVMRLT--KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL------TKLPTFL 269 (636)
T ss_dssp ECGGGGGCT--TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC------SSCCTTT
T ss_pred CCHHHhccc--CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC------ccChHHH
Confidence 445555554 77788887777776 5 33 5777777777777765 4567777
Q ss_pred CCCCCccEEEecCCC-CCc-ccCcc---c------cccchhcccccccccCCC--CcCCccccceeccccccccc-ccCc
Q 040255 557 CTFKTPITFEIIDCK-MLE-RLPDE---L------ENLEYLTVKGTTIRELPE--SLGRLSWVKRLILSNNSNLE-RIPE 622 (869)
Q Consensus 557 ~~l~~L~~L~L~~~~-~l~-~lp~~---l------~~L~~L~L~~n~i~~lP~--~i~~l~~L~~L~Ls~n~~l~-~lP~ 622 (869)
+++++|++|+|++|. ..+ .+|.. + ++|++|+|++|.++.+|. .++++++|++|+|++| .+. .+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-
Confidence 777777777777776 333 46655 3 677777777777777777 6777777777777777 444 677
Q ss_pred cccCCCCCCEEecCCCCCCcccCCC---Ccc-cceeecccCCCCccccCCCCCCc--cceEEeccCC
Q 040255 623 SIRHLSKLTFLFISHCERLQTLPEL---PCN-LGLLSARNCTSLEKLPAGLSSMS--SVLYVNLCNF 683 (869)
Q Consensus 623 ~i~~L~~L~~L~L~~c~~l~~lp~~---~~~-L~~L~l~~c~~l~~lp~~~~~l~--~L~~l~l~~~ 683 (869)
.++.+++|+.|+|++|. +..+|.. +++ |+.|++++|. +..+|..+..++ +|+.+++++|
T Consensus 348 ~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSS
T ss_pred hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCC
Confidence 66666777777777643 3366654 334 6666666643 446666555443 5666666653
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=4.8e-17 Score=186.15 Aligned_cols=215 Identities=19% Similarity=0.220 Sum_probs=175.4
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
.++.+.+..+. ...+.+..|.++++|+.|++++|....++. .+..++ +|++|++++|.+..+ +..+.+|+
T Consensus 76 ~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 76 NTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA--SLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TCSEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CccEEECcCCc---CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc--cCCEEECCCCcCCccChhhhcccCCCC
Confidence 34444444443 345778899999999999999987777664 566665 999999999999888 34588999
Q ss_pred eeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCCcCCcccccee
Q 040255 534 SLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPESLGRLSWVKRL 609 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L 609 (869)
+|+|++|.++.+. +..+.++++|+.|+|++|..++.+|.. +++|++|+|++|.++.+| .+..+++|+.|
T Consensus 151 ~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 151 ELWLRNNPIESIP------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEEL 223 (452)
T ss_dssp EEECCSCCCCEEC------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEE
T ss_pred EEECCCCCcceeC------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEE
Confidence 9999999987442 236888999999999999889999875 889999999999999997 58899999999
Q ss_pred ccccccccccc-CccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccC-CCCCCccceEEeccCCC
Q 040255 610 ILSNNSNLERI-PESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 610 ~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~ 684 (869)
+|++| .+..+ |..+..+++|+.|+|++|......|.. +++|+.|++++| .+..+|. .+..+++|+.+++++|+
T Consensus 224 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 224 EMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 99999 66666 667999999999999997655444543 578999999996 6667775 57889999999999876
Q ss_pred CCC
Q 040255 685 KLD 687 (869)
Q Consensus 685 ~~~ 687 (869)
-..
T Consensus 302 ~~C 304 (452)
T 3zyi_A 302 WNC 304 (452)
T ss_dssp EEC
T ss_pred cCC
Confidence 443
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=188.50 Aligned_cols=239 Identities=18% Similarity=0.213 Sum_probs=151.1
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCcc----ccccccc
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKTL----NICAEKL 532 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L 532 (869)
..++.+.+..+. ...+.+.+|.++++|++|++++|....+|.. +..++ +|++|++++|.+..+ +..+.+|
T Consensus 56 ~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 56 PHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS--NLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT--TCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC--CCCEEECCCCccccCChhHccccccC
Confidence 345555444443 3356788999999999999999887777765 45665 999999999998876 5568899
Q ss_pred eeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCC-CCcCCccccc
Q 040255 533 VSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELP-ESLGRLSWVK 607 (869)
Q Consensus 533 ~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP-~~i~~l~~L~ 607 (869)
+.|++++|.++.+ .|..+.++++|+.|+|++|. +..+|.. +++|+.|+|++|.+..++ ..+..+++|+
T Consensus 131 ~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 131 KSLEVGDNDLVYI------SHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp CEEEECCTTCCEE------CTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred CEEECCCCcccee------ChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 9999999988743 34567788888888888886 6667654 777888888888877553 4666677666
Q ss_pred eecccccccccccCcc------------------------ccCCCCCCEEecCCCCCCcccCCC----CcccceeecccC
Q 040255 608 RLILSNNSNLERIPES------------------------IRHLSKLTFLFISHCERLQTLPEL----PCNLGLLSARNC 659 (869)
Q Consensus 608 ~L~Ls~n~~l~~lP~~------------------------i~~L~~L~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c 659 (869)
.|+|++|..++.+|.. +..+++|+.|+|++|. +..+|.. +++|+.|++.+|
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence 6666666555555544 4444555555555433 2233221 344555555554
Q ss_pred CCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCceeee
Q 040255 660 TSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSMY 715 (869)
Q Consensus 660 ~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 715 (869)
......|..+.++++|+.|++++| .+..+.+..+..+..++.+++..|.+
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 283 QLAVVEPYAFRGLNYLRVLNVSGN------QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCSEECTTTBTTCTTCCEEECCSS------CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred ccceECHHHhcCcccCCEEECCCC------cCceeCHhHcCCCcccCEEEccCCCc
Confidence 322222445555555666665553 22222223333445555555554444
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=4.3e-18 Score=203.21 Aligned_cols=189 Identities=20% Similarity=0.214 Sum_probs=95.9
Q ss_pred cCCcceEEEEcCCC-CccccCcCCCCCCCCeeEEecCCCC-CCc--c---cccc------ccceeeecCCCccccccccc
Q 040255 483 KMPKLRFLRFYGDK-NKCMVSHLEGVPFAEVRHLEWPQCP-LKT--L---NICA------EKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~-~~~~~~~l~~l~~~~L~~L~l~~~~-l~~--l---~~~~------~~L~~L~L~~n~l~~l~~~~ 549 (869)
++++|++|++++|. ...+|..+..++ +|++|++++|. +.. + ...+ .+|+.|++++|+++
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~------ 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALP--EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK------ 318 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCS--SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS------
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCC--CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC------
Confidence 45555555554433 233444444443 45555555554 443 2 1111 44555555555443
Q ss_pred ccCCC--ccCCCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccc-cceecccccccccccCccc
Q 040255 550 QRLPS--SLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSW-VKRLILSNNSNLERIPESI 624 (869)
Q Consensus 550 ~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~-L~~L~Ls~n~~l~~lP~~i 624 (869)
.+|. .++++++|++|+|++|...+.+|.. +++|++|+|++|.++.+|..++.+++ |++|+|++| .+..+|..+
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~ 396 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIF 396 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchhh
Confidence 3444 4555556666666665533355522 55566666666665555655666655 666666665 455555555
Q ss_pred cCCC--CCCEEecCCCCCCcccCCCCc----------ccceeecccCCCCccccCC-CCCCccceEEeccC
Q 040255 625 RHLS--KLTFLFISHCERLQTLPELPC----------NLGLLSARNCTSLEKLPAG-LSSMSSVLYVNLCN 682 (869)
Q Consensus 625 ~~L~--~L~~L~L~~c~~l~~lp~~~~----------~L~~L~l~~c~~l~~lp~~-~~~l~~L~~l~l~~ 682 (869)
..++ +|+.|++++|...+.+|..++ +|+.|++++| .+..+|.. +..+++|+.|++++
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC
Confidence 4433 566666665555554444332 5555555553 34455543 23355566666555
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=5.8e-17 Score=177.35 Aligned_cols=210 Identities=20% Similarity=0.238 Sum_probs=164.2
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccc-cCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeee
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCM-VSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLK 536 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~-~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~ 536 (869)
.++.+.+..+. ...+.+..|.++++|++|++++|....+ |..+..++ +|++|++++|.++.+ .....+|++|+
T Consensus 53 ~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~~~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNK---ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKELPEKMPKTLQELR 127 (330)
T ss_dssp TCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSCCSBCCSSCCTTCCEEE
T ss_pred CCeEEECCCCc---CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC--CCCEEECCCCcCCccChhhcccccEEE
Confidence 34444443333 3356677899999999999999877666 56777776 999999999999888 33347899999
Q ss_pred cCCCcccccccccccCCCccCCCCCccEEEecCCCCCc---ccCcc---ccccchhcccccccccCCCCcCCccccceec
Q 040255 537 MPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLE---RLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLI 610 (869)
Q Consensus 537 L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~---~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~ 610 (869)
+++|.++.+ .+..+.++++|++|++++|. +. ..|.. +++|++|++++|.++.+|..+. ++|++|+
T Consensus 128 l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 128 VHENEITKV------RKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELH 198 (330)
T ss_dssp CCSSCCCBB------CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEE
T ss_pred CCCCccccc------CHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEE
Confidence 999998743 23357789999999999998 43 23333 7899999999999999998775 8999999
Q ss_pred cccccccccc-CccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 611 LSNNSNLERI-PESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 611 Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
|++| .+..+ |..+..+++|+.|+|++|...+..|.. +++|+.|++++| .+..+|..+..+++|+.+++++|.
T Consensus 199 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 199 LDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 9999 66666 567999999999999986644333323 578999999986 677999999999999999998753
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=9e-18 Score=182.40 Aligned_cols=200 Identities=15% Similarity=0.178 Sum_probs=170.0
Q ss_pred eecccccccCCcceEEEEcCCCCc-cccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCccccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNK-CMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~-~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~ 549 (869)
...|..|.++++|++|++++|... .+|..+..++ +|++|++++|.+... ...+++|++|++++|+++
T Consensus 91 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~------ 162 (313)
T 1ogq_A 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK--TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS------ 162 (313)
T ss_dssp SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT--TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE------
T ss_pred ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC--CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc------
Confidence 345778999999999999997765 6777788887 999999999998743 567899999999999987
Q ss_pred ccCCCccCCCC-CccEEEecCCCCCcccCcc---ccccchhcccccccc-cCCCCcCCccccceecccccccccccCccc
Q 040255 550 QRLPSSLCTFK-TPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIR-ELPESLGRLSWVKRLILSNNSNLERIPESI 624 (869)
Q Consensus 550 ~~lp~~~~~l~-~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~-~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i 624 (869)
+.+|..+..++ +|+.|+|++|...+.+|.. +. |++|+|++|.++ .+|..++.+++|+.|+|++| .+...++.+
T Consensus 163 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 240 (313)
T 1ogq_A 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKV 240 (313)
T ss_dssp EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGC
T ss_pred CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCcc
Confidence 45777888888 9999999999855577776 44 999999999999 66888999999999999999 666555569
Q ss_pred cCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCC
Q 040255 625 RHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLK 685 (869)
Q Consensus 625 ~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~ 685 (869)
..+++|++|+|++|...+.+|.. +++|+.|++++|...+.+|.. .++++|+.+++++|+.
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 99999999999998877788875 578999999998766688875 8889999999888653
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=7.1e-17 Score=176.84 Aligned_cols=208 Identities=20% Similarity=0.244 Sum_probs=161.1
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccc-cCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeee
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCM-VSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLK 536 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~-~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~ 536 (869)
.++.+.+..+. ...+.+..|.++++|+.|++++|....+ |..+..++ +|++|++++|.+..+ .....+|++|+
T Consensus 55 ~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~~L~~L~ 129 (332)
T 2ft3_A 55 DTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR--KLQKLYISKNHLVEIPPNLPSSLVELR 129 (332)
T ss_dssp TCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT--TCCEEECCSSCCCSCCSSCCTTCCEEE
T ss_pred CCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC--CCCEEECCCCcCCccCccccccCCEEE
Confidence 34444444333 3356677899999999999998877666 55677776 999999999999888 22337999999
Q ss_pred cCCCcccccccccccCCCccCCCCCccEEEecCCCCCc---ccCcc---ccccchhcccccccccCCCCcCCccccceec
Q 040255 537 MPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLE---RLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLI 610 (869)
Q Consensus 537 L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~---~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~ 610 (869)
+++|.++.+. +..+.++++|+.|++++|. +. ..|.. + +|++|++++|.++.+|..+. ++|+.|+
T Consensus 130 l~~n~i~~~~------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~ 199 (332)
T 2ft3_A 130 IHDNRIRKVP------KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELH 199 (332)
T ss_dssp CCSSCCCCCC------SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCB
T ss_pred CCCCccCccC------HhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEE
Confidence 9999887432 2347889999999999997 43 23333 4 89999999999999988775 7899999
Q ss_pred ccccccccccC-ccccCCCCCCEEecCCCCCCcccCC-C---CcccceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 611 LSNNSNLERIP-ESIRHLSKLTFLFISHCERLQTLPE-L---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 611 Ls~n~~l~~lP-~~i~~L~~L~~L~L~~c~~l~~lp~-~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
|++| .+..+| ..+..+++|+.|+|++|.. ..+|. . +++|+.|++++| .+..+|..+..+++|+.+++++|.
T Consensus 200 l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 200 LDHN-KIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCSS-CCCCCCTTSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred CCCC-cCCccCHHHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence 9999 677666 5689999999999998654 44443 2 578999999885 677899888999999999988753
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=3e-17 Score=200.04 Aligned_cols=230 Identities=15% Similarity=0.112 Sum_probs=99.8
Q ss_pred ccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---cccccc-ceeeecCCCcccccccccccCCCc
Q 040255 480 AFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NICAEK-LVSLKMPCTKVEQLWDDVQRLPSS 555 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~-L~~L~L~~n~l~~l~~~~~~lp~~ 555 (869)
.|+++++|+.|++++|....+| .+..++ +|+.|++++|.+..+ ...+.+ |+.|+|++|.++ .+|..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~--~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-------~lp~~ 637 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNV--KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-------YIPNI 637 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTS--EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-------SCCSC
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCC--cceEEECcCCccccchHHHhhccccCCEEECcCCCCC-------cCchh
Confidence 3444445555555444433444 333333 445555554444433 233334 445555544443 22333
Q ss_pred cCCCCC--ccEEEecCCCCCcccCcc--------ccccchhcccccccccCCCCcC-CccccceecccccccccccCccc
Q 040255 556 LCTFKT--PITFEIIDCKMLERLPDE--------LENLEYLTVKGTTIRELPESLG-RLSWVKRLILSNNSNLERIPESI 624 (869)
Q Consensus 556 ~~~l~~--L~~L~L~~~~~l~~lp~~--------l~~L~~L~L~~n~i~~lP~~i~-~l~~L~~L~Ls~n~~l~~lP~~i 624 (869)
+..++. |+.|+|++|...+.+|.. +.+|+.|+|++|.++.+|..+. .+++|+.|+|++| .+..+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHH
Confidence 333322 555555555432222211 2245555555555555544433 4455555555555 444555443
Q ss_pred cCCC--------CCCEEecCCCCCCcccCCC-----CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhh
Q 040255 625 RHLS--------KLTFLFISHCERLQTLPEL-----PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNEL 691 (869)
Q Consensus 625 ~~L~--------~L~~L~L~~c~~l~~lp~~-----~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l 691 (869)
.... +|+.|+|++|+ +..+|.. +++|+.|++++| .+..+|..+.++++|+.|++++|.....|.+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccc
Confidence 2221 45555555432 2344432 234455555443 2333454445555555555544432222333
Q ss_pred hhhhhccccccccccccCCceeeecCCCCCCccc
Q 040255 692 SEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWF 725 (869)
Q Consensus 692 ~~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP~w~ 725 (869)
.+.++..+..+..|+.++++.|.+ +.||..+
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L---~~Ip~~l 825 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI---RKVDEKL 825 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC---CBCCSCC
T ss_pred cccChHHHhcCCCCCEEECCCCCC---CccCHhh
Confidence 333333333444444444444444 3444443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=7.9e-17 Score=184.42 Aligned_cols=252 Identities=14% Similarity=0.134 Sum_probs=150.4
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCc-ccc-CcCCCCCCCCeeEEecCCCCCCcc----ccccccc
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNK-CMV-SHLEGVPFAEVRHLEWPQCPLKTL----NICAEKL 532 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~-~~~-~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L 532 (869)
.++.+.+..+.+ ..+.+..|+++++|++|++++|... .++ ..+..++ +|++|++++|.+..+ ...+.+|
T Consensus 31 ~l~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 31 HVNYVDLSLNSI---AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS--SLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp TCCEEECCSSCC---CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT--TCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred ccCEEEecCCcc---CcCChhHhccCccccEEECcCCcccceECcccccccc--cCCEEeCCCCccCccChhhccCcccC
Confidence 344444443333 3455677778888888888776543 343 3455555 788888888777665 4456778
Q ss_pred eeeecCCCcccccccccccCCC--ccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccC-CCCcC----
Q 040255 533 VSLKMPCTKVEQLWDDVQRLPS--SLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLG---- 601 (869)
Q Consensus 533 ~~L~L~~n~l~~l~~~~~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~---- 601 (869)
++|++++|.++. .+|. .+.++++|++|+|++|...+..|.. +++|++|+|++|.++.+ |..+.
T Consensus 106 ~~L~L~~n~l~~------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 106 EVLTLTQCNLDG------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp CEEECTTSCCBT------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred CEEeCCCCCCCc------cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 888888777752 1122 2566677777777777633333432 56677777777766644 33333
Q ss_pred ------------------------------CccccceecccccccccccCccccC-------------------------
Q 040255 602 ------------------------------RLSWVKRLILSNNSNLERIPESIRH------------------------- 626 (869)
Q Consensus 602 ------------------------------~l~~L~~L~Ls~n~~l~~lP~~i~~------------------------- 626 (869)
.+++|++|+|++|...+.+|..+..
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 3367888888877333333332211
Q ss_pred --------------CCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCch
Q 040255 627 --------------LSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPN 689 (869)
Q Consensus 627 --------------L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~ 689 (869)
.++|+.|++++|...+.+|.. +++|+.|++++|...+..|..+.++++|+.|++++|
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N------ 333 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN------ 333 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS------
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC------
Confidence 246777777776655555554 467778888776444444557777888888887774
Q ss_pred hhhhhhhccccccccccccCCceeeecCCCCCCcccccCC
Q 040255 690 ELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQS 729 (869)
Q Consensus 690 ~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP~w~~~~~ 729 (869)
.+..+.+..+..+..++.++++.|.+ .+..|.+|..-.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~ 371 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHI--RALGDQSFLGLP 371 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCC--CEECTTTTTTCT
T ss_pred ccCCcChhHhcCcccCCEEECCCCcc--cccChhhccccc
Confidence 23333344445566666666666655 334466665443
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=8.9e-17 Score=183.99 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=50.5
Q ss_pred ccchhccccccccc-CCCCcCCccccceeccccccccccc-CccccCCCCCCEEecCCCCCCcccCCC---Ccccceeec
Q 040255 582 NLEYLTVKGTTIRE-LPESLGRLSWVKRLILSNNSNLERI-PESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSA 656 (869)
Q Consensus 582 ~L~~L~L~~n~i~~-lP~~i~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l 656 (869)
+|++|++++|.++. +|..++.+++|+.|+|++| .+..+ |..++.+++|+.|+|++|...+..|.. +++|+.|++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 44555555555542 3445555666666666665 34443 334555666666666654332222222 345555666
Q ss_pred ccCCCCccccCCCCCCccceEEeccC
Q 040255 657 RNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 657 ~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
++|...+..|..+.++++|+.|++++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCcccccChhhccccccccEEECCC
Confidence 55433222344555556666666555
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=4.1e-17 Score=198.83 Aligned_cols=200 Identities=22% Similarity=0.246 Sum_probs=125.8
Q ss_pred ccccccCCcceEEEEcCCCCcc------------------ccCcCC--CCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKC------------------MVSHLE--GVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~------------------~~~~l~--~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
|..|++|++|+.|++++|.... +|..+. .++ +|++|++++|.+... ...+.+|+
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~--~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK--DLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT--TCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC--CCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5567888888888888776655 777766 665 788888888775433 45677888
Q ss_pred eeecCCCc-ccc--cccccccCCCccCCCCCccEEEecCCCCCcccCc--c---ccccchhcccccccccCCCCcCCccc
Q 040255 534 SLKMPCTK-VEQ--LWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPD--E---LENLEYLTVKGTTIRELPESLGRLSW 605 (869)
Q Consensus 534 ~L~L~~n~-l~~--l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~--~---l~~L~~L~L~~n~i~~lP~~i~~l~~ 605 (869)
.|+|++|+ ++. ++.++..++..+..+++|+.|+|++|. +..+|. . +++|+.|+|++|.++.+| .++.+++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 88888886 652 333333333234445577777777776 446776 3 666777777777777667 6777777
Q ss_pred cceecccccccccccCccccCCCC-CCEEecCCCCCCcccCCCC-----cccceeecccCCCCccccC---CCC--CCcc
Q 040255 606 VKRLILSNNSNLERIPESIRHLSK-LTFLFISHCERLQTLPELP-----CNLGLLSARNCTSLEKLPA---GLS--SMSS 674 (869)
Q Consensus 606 L~~L~Ls~n~~l~~lP~~i~~L~~-L~~L~L~~c~~l~~lp~~~-----~~L~~L~l~~c~~l~~lp~---~~~--~l~~ 674 (869)
|+.|+|++| .+..+|..+..+++ |+.|+|++|. +..+|..+ ++|+.|++++|...+.+|. .+. .+++
T Consensus 597 L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 777777777 56677766777776 7777777654 34666542 2266666666544333332 222 2235
Q ss_pred ceEEeccCC
Q 040255 675 VLYVNLCNF 683 (869)
Q Consensus 675 L~~l~l~~~ 683 (869)
|+.|++++|
T Consensus 675 L~~L~Ls~N 683 (876)
T 4ecn_A 675 ASTVTLSYN 683 (876)
T ss_dssp EEEEECCSS
T ss_pred cCEEEccCC
Confidence 666665553
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=1.1e-16 Score=175.28 Aligned_cols=225 Identities=15% Similarity=0.181 Sum_probs=175.4
Q ss_pred cCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 483 KMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
...+|+.++++++....+|..+. +.|++|++++|.++.+ ...+.+|++|++++|.++. ..|..+.+
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~ 98 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK------ISPGAFAP 98 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCC----TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC------BCTTTTTT
T ss_pred CcCCCeEEEecCCCccccCccCC----CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe------eCHHHhcC
Confidence 34578889988877667776442 5899999999998887 4568899999999998873 24667889
Q ss_pred CCCccEEEecCCCCCcccCcc-ccccchhcccccccccCCC-CcCCccccceeccccccccc---ccCccccCCCCCCEE
Q 040255 559 FKTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELPE-SLGRLSWVKRLILSNNSNLE---RIPESIRHLSKLTFL 633 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~---~lP~~i~~L~~L~~L 633 (869)
+++|++|+|++|. +..+|.. .++|++|++++|.++.+|. .++.+++|++|++++| .+. ..|..+..+++|+.|
T Consensus 99 l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCCEEECCCCc-CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEE
Confidence 9999999999998 7888887 7899999999999997755 5788999999999999 554 456678999999999
Q ss_pred ecCCCCCCcccCCC-CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCce
Q 040255 634 FISHCERLQTLPEL-PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKK 712 (869)
Q Consensus 634 ~L~~c~~l~~lp~~-~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 712 (869)
++++|. +..+|.. +++|+.|++++|......|..+.++++|+.|++++|. +....+..+..+..++.++++.
T Consensus 177 ~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 177 RIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS------ISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp ECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC------CCEECTTTGGGSTTCCEEECCS
T ss_pred ECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc------CceeChhhccCCCCCCEEECCC
Confidence 999854 5667765 5789999999875333335688899999999998843 3333333445566777788887
Q ss_pred eeecCCCCCCcccccCC
Q 040255 713 SMYFPGNEIPKWFRHQS 729 (869)
Q Consensus 713 ~~~~pg~~iP~w~~~~~ 729 (869)
|.+ ..+|.++....
T Consensus 250 N~l---~~lp~~l~~l~ 263 (330)
T 1xku_A 250 NKL---VKVPGGLADHK 263 (330)
T ss_dssp SCC---SSCCTTTTTCS
T ss_pred CcC---ccCChhhccCC
Confidence 776 48888876554
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=6.3e-17 Score=175.06 Aligned_cols=202 Identities=21% Similarity=0.253 Sum_probs=133.2
Q ss_pred eecccccccCCcceEEEEcCCCCccc---cCcCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCcccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNKCM---VSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDD 548 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~~~---~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~ 548 (869)
.+++..|.++++|+.|++++|..... +..+..++ +|++|++++|.+..+ ...+.+|++|++++|.++.+..
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~- 118 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT--SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE- 118 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS--CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTT-
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCccccccccc--ccCEEECCCCccccChhhcCCCCCCCEEECCCCccccccc-
Confidence 45556677777788887777654433 33344443 777777777777666 4456777777777777663211
Q ss_pred cccCCCccCCCCCccEEEecCCCCCcccCcc---ccccchhccccccccc--CCCCcCCccccceeccccccccccc-Cc
Q 040255 549 VQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRE--LPESLGRLSWVKRLILSNNSNLERI-PE 622 (869)
Q Consensus 549 ~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~--lP~~i~~l~~L~~L~Ls~n~~l~~l-P~ 622 (869)
+..+.++++|++|++++|......|.. +++|++|+|++|.++. +|..++.+++|++|+|++| .+..+ |.
T Consensus 119 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 193 (306)
T 2z66_A 119 ----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 193 (306)
T ss_dssp ----TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred ----chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHH
Confidence 125667777888888877633333332 6777888888887764 6777777888888888887 55555 55
Q ss_pred cccCCCCCCEEecCCCCCCcccCCC----CcccceeecccCCCCccccCCCCCC-ccceEEeccCCCC
Q 040255 623 SIRHLSKLTFLFISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPAGLSSM-SSVLYVNLCNFLK 685 (869)
Q Consensus 623 ~i~~L~~L~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~l~l~~~~~ 685 (869)
.+..+++|+.|+|++|. +..+|.. +++|+.|++++|...+..|..+..+ ++|+.+++++|+-
T Consensus 194 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred HhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 67777888888887754 3444432 4677778887765555556666666 4777777777543
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=1.4e-16 Score=189.41 Aligned_cols=258 Identities=16% Similarity=0.142 Sum_probs=188.8
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----cccccccee
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVS 534 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~ 534 (869)
.++.+.+..+. ...+.+..|.++++|+.|++++|....+|.++..++ +|++|++++|.+..+ ...+++|+.
T Consensus 255 ~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHY---FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLS--TLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCC---CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCT--TCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCc---cCccCHHHhccccCCCEEeccCCccCCCChhhcccc--cCCEEECccCCcCcCchhhhhccCcCCE
Confidence 45555554443 335677889999999999999988888998888876 999999999998876 556889999
Q ss_pred eecCCCcccccccccccCCC-ccCCCCCccEEEecCCCCCccc---Ccc---ccccchhcccccccccC-CCCcCCcccc
Q 040255 535 LKMPCTKVEQLWDDVQRLPS-SLCTFKTPITFEIIDCKMLERL---PDE---LENLEYLTVKGTTIREL-PESLGRLSWV 606 (869)
Q Consensus 535 L~L~~n~l~~l~~~~~~lp~-~~~~l~~L~~L~L~~~~~l~~l---p~~---l~~L~~L~L~~n~i~~l-P~~i~~l~~L 606 (869)
|++++|.+. ..+|. .+.++++|++|++++|. +..+ |.. +++|++|++++|.+..+ |..++.+++|
T Consensus 330 L~l~~n~~~------~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 330 LSIKGNTKR------LELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp EECCSCSSC------CBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred EECCCCCcc------cccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 999999876 23443 37788899999999987 5444 332 78899999999988854 6788888999
Q ss_pred ceecccccccccc-cCcc-ccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCcc-cc--CCCCCCccceEE
Q 040255 607 KRLILSNNSNLER-IPES-IRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEK-LP--AGLSSMSSVLYV 678 (869)
Q Consensus 607 ~~L~Ls~n~~l~~-lP~~-i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~-lp--~~~~~l~~L~~l 678 (869)
+.|+|++| .+.. .|.. +..+++|+.|++++|......|.. +++|+.|++++|...+. +| ..+..+++|+.|
T Consensus 403 ~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 403 ELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp SEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 99999988 5544 3433 888899999999987765555554 57888888888754331 22 357788888888
Q ss_pred eccCCCCCCchhhhhhhhccccccccccccCCceeeecCCCCCCcccccCCCCCeEEEecCC
Q 040255 679 NLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQSMGSSATLKTRP 740 (869)
Q Consensus 679 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP~w~~~~~~g~~i~i~lp~ 740 (869)
++++| .+..+.+..+..+..++.++++.|.+ .+.+|.+|..-..- .+.+..
T Consensus 482 ~Ls~n------~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~l~~l~~L---~L~L~~ 532 (606)
T 3t6q_A 482 VLSFC------DLSSIDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHLKGI---YLNLAS 532 (606)
T ss_dssp ECTTS------CCCEECTTTTTTCTTCCEEECCSSCC--CGGGGGGGTTCCSC---EEECCS
T ss_pred ECCCC------ccCccChhhhccccCCCEEECCCCcc--CcCChhHhCccccc---EEECcC
Confidence 88874 33344445555667777777777766 55667777654422 555543
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=3e-16 Score=168.33 Aligned_cols=192 Identities=22% Similarity=0.209 Sum_probs=163.5
Q ss_pred ccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCc
Q 040255 480 AFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSS 555 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~ 555 (869)
.++++++|+.++++++....+|.++. ++|+.|++++|.+..+ ...+.+|+.|+|++|.++.+..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------- 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------- 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------
T ss_pred cccccCCccEEECCCCCCCcCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------
Confidence 46789999999999988778887653 5899999999999877 5568999999999999885432
Q ss_pred cCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCC-CCcCCccccceecccccccccccCcc-ccCCCCC
Q 040255 556 LCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELP-ESLGRLSWVKRLILSNNSNLERIPES-IRHLSKL 630 (869)
Q Consensus 556 ~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP-~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L 630 (869)
...+++|++|+|++|. +..+|.. +++|++|+|++|.++.+| ..+..+++|++|+|++| .+..+|.. +..+++|
T Consensus 73 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTC
T ss_pred CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCC
Confidence 2678899999999997 7888876 889999999999999886 56899999999999999 88888876 6889999
Q ss_pred CEEecCCCCCCcccCCC----CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCC
Q 040255 631 TFLFISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLD 687 (869)
Q Consensus 631 ~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~ 687 (869)
+.|+|++| .+..+|.. +++|+.|++++| .+..+|..+..+..|+.+++++|+-..
T Consensus 151 ~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 151 EKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCccC
Confidence 99999985 56678763 578999999884 688999988888899999999876554
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=5.3e-16 Score=169.89 Aligned_cols=212 Identities=19% Similarity=0.214 Sum_probs=170.5
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
..++.+.+..+.. ..+.+.+|.++++|++|++++|....+|..+. ++|++|++++|.+..+ ...+.+|+
T Consensus 78 ~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 78 QHLYALVLVNNKI---SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTCCEEECCSSCC---CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred CCCcEEECCCCcc---CccCHhHhhCcCCCCEEECCCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 3455555544443 35678899999999999999988877877654 4999999999999887 45689999
Q ss_pred eeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc-ccccchhcccccccccCC-CCcCCccccceecc
Q 040255 534 SLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELP-ESLGRLSWVKRLIL 611 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP-~~i~~l~~L~~L~L 611 (869)
.|++++|.++.. +..|..+..+ +|+.|++++|. +..+|.. .++|++|++++|.++.++ ..+..+++|+.|+|
T Consensus 151 ~L~l~~n~l~~~----~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 151 CIEMGGNPLENS----GFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp EEECCSCCCBGG----GSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred EEECCCCccccC----CCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 999999998732 3455667777 99999999998 7889887 789999999999999775 78999999999999
Q ss_pred cccccccccCc-cccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccC-CCCC------CccceEEec
Q 040255 612 SNNSNLERIPE-SIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPA-GLSS------MSSVLYVNL 680 (869)
Q Consensus 612 s~n~~l~~lP~-~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~-~~~~------l~~L~~l~l 680 (869)
++| .+..+|. .+..+++|+.|+|++| .+..+|.. +++|+.|++++| .++.+|. .+.. ...|+.+++
T Consensus 225 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 225 GHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred CCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEe
Confidence 999 7777765 6999999999999986 56688875 568999999985 5667765 3433 356788888
Q ss_pred cCCCC
Q 040255 681 CNFLK 685 (869)
Q Consensus 681 ~~~~~ 685 (869)
++|+.
T Consensus 302 ~~N~~ 306 (332)
T 2ft3_A 302 FNNPV 306 (332)
T ss_dssp CSSSS
T ss_pred ecCcc
Confidence 88653
No 31
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=3.7e-16 Score=184.35 Aligned_cols=184 Identities=27% Similarity=0.242 Sum_probs=130.7
Q ss_pred cCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecCCCcccccccccc------------
Q 040255 483 KMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMPCTKVEQLWDDVQ------------ 550 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~------------ 550 (869)
.+++|++|++++|....+|. .+ .+|+.|++++|.++.+...+++|++|++++|+++.+.....
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LP--SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL 173 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CC--TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred CCCCCCEEECcCCcCCCCCC---CC--CCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCC
Confidence 55667777776665555544 11 46666677666666664445677777777776664432111
Q ss_pred -cCCCccCCCCCccEEEecCCCCCcccCccccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCC
Q 040255 551 -RLPSSLCTFKTPITFEIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSK 629 (869)
Q Consensus 551 -~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~ 629 (869)
.+| ..+++|+.|+|++|. +..+|..+++|+.|++++|.++.+|.. +++|++|+|++| .+..+| ..+++
T Consensus 174 ~~l~---~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~ 242 (622)
T 3g06_A 174 TSLP---MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN-RLTSLP---VLPSE 242 (622)
T ss_dssp SCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCC---CCCTT
T ss_pred CCCc---ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCC---CCCCCEEEccCC-ccCcCC---CCCCc
Confidence 111 223677777777776 666777777778888888877777753 478889999988 888888 45688
Q ss_pred CCEEecCCCCCCcccCCCCcccceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 630 LTFLFISHCERLQTLPELPCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 630 L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
|+.|+|++| .+..+|..+++|+.|++++| .+..+|..+.++++|+.|++++|+
T Consensus 243 L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 243 LKELMVSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CcEEECCCC-CCCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 999999985 56788888889999999886 677888888899999999988854
No 32
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.68 E-value=2.4e-18 Score=163.02 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=70.7
Q ss_pred CCcEEEccccccccCchhHHHHHHHcc--CCceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccccccc------
Q 040255 1 MYDVFLSFRGEDTRDNFTSHLHHVLSL--KSIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW------ 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~l~~~L~~--~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w------ 71 (869)
+|||||||+|+|+ .|++||+.+|++ +|+++|+|+ ++.+|+.|.++|.+||++|+++|+|+|+||++|.|
T Consensus 10 ~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~ 87 (146)
T 3ub2_A 10 DYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQML 87 (146)
T ss_dssp SEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHH
T ss_pred cceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHH
Confidence 5999999999996 589999999998 699999999 99999999999999999999999999999999999
Q ss_pred ---------------eEeeeccccc----cccccchhHHhHHHHhcchhhHHhHHHHH
Q 040255 72 ---------------FFYRVDPSHV----RKQSHSFGRHFSRLRKRFPEKMKRWKNAL 110 (869)
Q Consensus 72 ---------------vfy~vdp~~v----r~q~g~~~~~~~~~~~~~~~~i~~wr~al 110 (869)
|||+|+++++ |.....-......--.++.+.|.+|++++
T Consensus 88 ~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 88 QALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 8899986654 44332111111111112236777777654
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=4.4e-16 Score=178.20 Aligned_cols=220 Identities=15% Similarity=0.141 Sum_probs=170.3
Q ss_pred CcceEEEEcCCCCcccc-CcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 485 PKLRFLRFYGDKNKCMV-SHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~-~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
++|+.|++++|....++ ..+..++ +|+.|++++|.+..+ +..+.+|++|+|++|+++.+. +..+.++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l 146 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP------SGAFEYL 146 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC------TTTSSSC
T ss_pred CCccEEECcCCcCceECHHHcCCCC--CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC------hhhhccc
Confidence 68999999998777664 4566666 999999999998877 456889999999999987432 2347889
Q ss_pred CCccEEEecCCCCCcccCcc----ccccchhcccc-cccccCCC-CcCCccccceecccccccccccCccccCCCCCCEE
Q 040255 560 KTPITFEIIDCKMLERLPDE----LENLEYLTVKG-TTIRELPE-SLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFL 633 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~-n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 633 (869)
++|++|+|++|. +..+|.. +++|++|+|++ +.+..+|. .+..+++|++|+|++| .+..+| .+..+++|+.|
T Consensus 147 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 147 SKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEEL 223 (452)
T ss_dssp TTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEE
T ss_pred CCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccccccEE
Confidence 999999999998 7788774 88999999998 56677765 5889999999999999 888887 58899999999
Q ss_pred ecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCC
Q 040255 634 FISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGI 710 (869)
Q Consensus 634 ~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 710 (869)
+|++|...+..|.. +++|+.|++.+|......|..+.++++|+.|++++| .+..+.+..+..+..++.+++
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN------NLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS------CCSCCCTTSSTTCTTCCEEEC
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC------cCCccChHHhccccCCCEEEc
Confidence 99997655544543 578999999987544444668889999999999885 333333344455666777777
Q ss_pred ceeeecCCCCC
Q 040255 711 KKSMYFPGNEI 721 (869)
Q Consensus 711 ~~~~~~pg~~i 721 (869)
..|.+-....+
T Consensus 298 ~~Np~~CdC~~ 308 (452)
T 3zyi_A 298 HHNPWNCDCDI 308 (452)
T ss_dssp CSSCEECSTTT
T ss_pred cCCCcCCCCCc
Confidence 76655445554
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=176.27 Aligned_cols=171 Identities=15% Similarity=0.196 Sum_probs=139.7
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
.++.+.+..+.. ..+.+..|.++++|+.|++++|....+++ .+..++ +|++|++++|.++.+ ...+.+|+
T Consensus 53 ~L~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 53 AVKSLDLSNNRI---TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG--SLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred cCcEEECCCCcC---cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC--CCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 455555554443 35667789999999999999987777654 566766 999999999999888 34688999
Q ss_pred eeecCCCcccccccccccCCC--ccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccC-CCCcCCcccc
Q 040255 534 SLKMPCTKVEQLWDDVQRLPS--SLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLGRLSWV 606 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~~l~~L 606 (869)
+|++++|+++. +|. .+.++++|++|++++|..++.+|.. +++|++|++++|.++.+ |..++.+++|
T Consensus 128 ~L~L~~n~l~~-------l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 128 FLNLLGNPYKT-------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp EEECTTCCCSS-------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred EEECCCCCCcc-------cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 99999999873 444 6788999999999999767777654 88999999999999955 8899999999
Q ss_pred ceecccccccccccCcc-ccCCCCCCEEecCCCCCCc
Q 040255 607 KRLILSNNSNLERIPES-IRHLSKLTFLFISHCERLQ 642 (869)
Q Consensus 607 ~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~ 642 (869)
++|++++| .++.+|.. +..+++|+.|++++|...+
T Consensus 201 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 201 SHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CeecCCCC-ccccchhhhhhhcccccEEECCCCcccc
Confidence 99999999 78888876 4568999999999976443
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.8e-16 Score=171.54 Aligned_cols=213 Identities=17% Similarity=0.235 Sum_probs=163.6
Q ss_pred CcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCcc------ccccccceeeecCCCcccccccccccCCCccC
Q 040255 485 PKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKTL------NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLC 557 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~l------~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~ 557 (869)
++|+.|++++|....+|.. +..++ +|++|++++|.+..+ .+.+.+|++|++++|.++. +|..+.
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-------l~~~~~ 98 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFL 98 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-------EEEEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccc--cCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-------ChhhcC
Confidence 6899999999888788876 45665 999999999998744 4568899999999998874 455677
Q ss_pred CCCCccEEEecCCCCCcccCc--c---ccccchhccccccccc-CCCCcCCccccceecccccccccc--cCccccCCCC
Q 040255 558 TFKTPITFEIIDCKMLERLPD--E---LENLEYLTVKGTTIRE-LPESLGRLSWVKRLILSNNSNLER--IPESIRHLSK 629 (869)
Q Consensus 558 ~l~~L~~L~L~~~~~l~~lp~--~---l~~L~~L~L~~n~i~~-lP~~i~~l~~L~~L~Ls~n~~l~~--lP~~i~~L~~ 629 (869)
.+++|++|++++|. +..+|. . +++|++|++++|.+.. .|..++.+++|++|+|++| .+.. +|..+..+++
T Consensus 99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 99 GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRN 176 (306)
T ss_dssp TCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTT
T ss_pred CCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcC
Confidence 88999999999998 666665 2 8899999999999984 5677899999999999999 6654 8888999999
Q ss_pred CCEEecCCCCCCcccCCC---CcccceeecccCCCCccccC-CCCCCccceEEeccCCCCCCchhhhhhhhcccccc-cc
Q 040255 630 LTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKH-SL 704 (869)
Q Consensus 630 L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~-~~ 704 (869)
|+.|+|++|...+..|.. +++|+.|++++|. +..++. .+..+++|+.|++++|. +....+..+... ..
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~------l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH------IMTSKKQELQHFPSS 249 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC------CCBCSSSSCCCCCTT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC------CcccCHHHHHhhhcc
Confidence 999999997654444544 5789999999864 555554 67889999999998853 322222233333 24
Q ss_pred ccccCCceeee
Q 040255 705 YEERGIKKSMY 715 (869)
Q Consensus 705 l~~~~~~~~~~ 715 (869)
++.+++..|.+
T Consensus 250 L~~L~L~~N~~ 260 (306)
T 2z66_A 250 LAFLNLTQNDF 260 (306)
T ss_dssp CCEEECTTCCE
T ss_pred CCEEEccCCCe
Confidence 55555555544
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=5e-16 Score=177.06 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=171.9
Q ss_pred CcceEEEEcCCCCcccc-CcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 485 PKLRFLRFYGDKNKCMV-SHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~-~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
++++.|++++|....++ ..+..++ +|++|++++|.+..+ +..+.+|++|+|++|+++.+. +..+.++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l 135 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP------NGAFVYL 135 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCS--SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC------TTTSCSC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCC--CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC------HhHhhcc
Confidence 68999999998877766 4566665 999999999999877 456899999999999987432 2358889
Q ss_pred CCccEEEecCCCCCcccCcc----ccccchhcccc-cccccCCC-CcCCccccceecccccccccccCccccCCCCCCEE
Q 040255 560 KTPITFEIIDCKMLERLPDE----LENLEYLTVKG-TTIRELPE-SLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFL 633 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~-n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 633 (869)
++|++|+|++|. +..+|.. +++|++|+|++ +.+..+|. .+..+++|++|+|++| .+..+| .+..+++|+.|
T Consensus 136 ~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDEL 212 (440)
T ss_dssp SSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEE
T ss_pred ccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcccCEE
Confidence 999999999998 7788774 88999999998 55667765 6889999999999999 899998 58999999999
Q ss_pred ecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCC
Q 040255 634 FISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGI 710 (869)
Q Consensus 634 ~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 710 (869)
+|++|......|.. +++|+.|++.+|......|..+.++++|+.|++++| .+..+.+..+..+..++.+++
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N------~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN------NLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS------CCCCCCTTTTSSCTTCCEEEC
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC------CCCccChhHhccccCCCEEEc
Confidence 99997544443544 578999999986544444558899999999999885 333333444455667777777
Q ss_pred ceeeecCCCCC
Q 040255 711 KKSMYFPGNEI 721 (869)
Q Consensus 711 ~~~~~~pg~~i 721 (869)
..|.+.....+
T Consensus 287 ~~Np~~CdC~l 297 (440)
T 3zyj_A 287 HHNPWNCNCDI 297 (440)
T ss_dssp CSSCEECSSTT
T ss_pred CCCCccCCCCc
Confidence 76665445543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=9.1e-16 Score=171.96 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=95.4
Q ss_pred eecccccccCCcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCccccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~ 549 (869)
.+.+..|.++++|++|++++|....+++. +..++ +|++|++++|.+..+ ...+.+|++|++++|.++.+
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~---- 156 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI---- 156 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC----
T ss_pred ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC--CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc----
Confidence 34444555666666666655554444332 34443 566666666655555 12355566666666655421
Q ss_pred ccCCCccCCCCCccEEEecCCCCCcccCcc-ccccchhccccccccc-------------------CCCCcCCcccccee
Q 040255 550 QRLPSSLCTFKTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIRE-------------------LPESLGRLSWVKRL 609 (869)
Q Consensus 550 ~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~-------------------lP~~i~~l~~L~~L 609 (869)
.|..+.++++|++|++++|. +..++.. +++|+.|++++|.++. +|..+ +++|+.|
T Consensus 157 --~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L 231 (390)
T 3o6n_A 157 --EDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTIL 231 (390)
T ss_dssp --CTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC--CSSCCEE
T ss_pred --ChhhccCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc--cccccEE
Confidence 23345556666666666665 4444333 4444444444443332 22111 2344555
Q ss_pred cccccccccccCccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 610 ILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 610 ~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
+|++| .+..+| .+..+++|+.|+|++|...+..|.. +++|+.|++++| .+..+|..+..+++|+.|++++|
T Consensus 232 ~l~~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 232 KLQHN-NLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS
T ss_pred ECCCC-CCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC
Confidence 55554 444432 4555555555555554433333332 345555555553 34445554455555555555543
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=3.7e-16 Score=185.69 Aligned_cols=129 Identities=23% Similarity=0.207 Sum_probs=64.4
Q ss_pred ccccchhcccccccccCCCCcCCccccceeccccccccccc-CccccCCCCCCEEecCCCCCCcccCCC----Cccccee
Q 040255 580 LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERI-PESIRHLSKLTFLFISHCERLQTLPEL----PCNLGLL 654 (869)
Q Consensus 580 l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~lp~~----~~~L~~L 654 (869)
+++|++|++++|.++++|..++.+++|++|++++| .+..+ |..+..+++|++|++++|.....+|.. +++|+.|
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 44555555555555555555555555555555555 33333 334555555555555555444444432 3455555
Q ss_pred ecccCCCCccc--cCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCceeee
Q 040255 655 SARNCTSLEKL--PAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSMY 715 (869)
Q Consensus 655 ~l~~c~~l~~l--p~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 715 (869)
++++|...... |..+.++++|+.|++++| .+....+..+..+..++.+++..+.+
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYN------EPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSC------SCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCC------cCCcCCHHHhcCCccCCeEECCCCcC
Confidence 55554322221 344555556666665553 22222333344455566666655544
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=5.8e-16 Score=165.63 Aligned_cols=192 Identities=18% Similarity=0.261 Sum_probs=150.8
Q ss_pred CCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCc-ccccccccccCCCccC
Q 040255 484 MPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTK-VEQLWDDVQRLPSSLC 557 (869)
Q Consensus 484 l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~-l~~l~~~~~~lp~~~~ 557 (869)
.++|+.|++++|....++. .+..++ +|++|++++|.+..+ ...+.+|++|++++|. ++.+ .|..+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~------~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACR--NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV------DPATFH 102 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC------CTTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCC--CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc------CHHHhc
Confidence 4689999999887777765 455555 899999999988776 4567889999999986 6532 255678
Q ss_pred CCCCccEEEecCCCCCcccCc-c---ccccchhcccccccccCCCC-cCCccccceecccccccccccCcc-ccCCCCCC
Q 040255 558 TFKTPITFEIIDCKMLERLPD-E---LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPES-IRHLSKLT 631 (869)
Q Consensus 558 ~l~~L~~L~L~~~~~l~~lp~-~---l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~ 631 (869)
++++|++|+|++|. +..++. . +++|++|+|++|.++.+|.. ++.+++|++|+|++| .+..+|.. +..+++|+
T Consensus 103 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 103 GLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLD 180 (285)
T ss_dssp TCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccC
Confidence 88999999999998 555543 3 78899999999999988654 788999999999999 78888865 88899999
Q ss_pred EEecCCCCCCcccCCC---CcccceeecccCCCCccccC-CCCCCccceEEeccCCCCC
Q 040255 632 FLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLKL 686 (869)
Q Consensus 632 ~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~~ 686 (869)
.|+|++|......|.. +++|+.|++++| .+..+|. .+..+++|+.+++++|+-.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9999997655554654 468889999886 4555654 5788899999999886544
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=1.6e-16 Score=188.74 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=143.7
Q ss_pred ccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCC-Ccc-ccccccceeeecCCCcccccccccccCCCccC
Q 040255 480 AFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPL-KTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLC 557 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l-~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~ 557 (869)
.+..+++|+.|++++|....+| .+ .++ +|+.|++++|.. ... ...+++|+.|++++|.++.+ ..+|..+.
T Consensus 302 ~l~~~~~L~~L~l~~n~l~~lp-~~-~l~--~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~~ 373 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLKQFP-TL-DLP--FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS----GCCSYSDL 373 (606)
T ss_dssp CCCTTCCCSEEEEESCCCSSCC-CC-CCS--SCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEE----EECCHHHH
T ss_pred hccccccCCEEEcccccCcccc-cC-CCC--ccceeeccCCcCccchhhccCCCCCEEECcCCccCCC----cchhhhhc
Confidence 5666667777777776665555 33 333 777777777742 222 44566777777777776532 22345566
Q ss_pred CCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCC--CCcCCccccceecccccccccccCccccCCCCCCE
Q 040255 558 TFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELP--ESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTF 632 (869)
Q Consensus 558 ~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP--~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~ 632 (869)
.+++|+.|+|++|. +..+|.. +++|+.|++++|.+..++ ..++.+++|++|++++|...+..|..++.+++|+.
T Consensus 374 ~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 67777777777776 5566644 667777777777777553 36677777777777777433445666777777777
Q ss_pred EecCCCCCCcc-cCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhcccccccccccc
Q 040255 633 LFISHCERLQT-LPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEER 708 (869)
Q Consensus 633 L~L~~c~~l~~-lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 708 (869)
|++++|...+. +|.. +++|+.|++++|...+..|..+.++++|+.|++++| .+....+..+..+..++.+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N------~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN------NLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS------CCSCEEGGGTTTCTTCCEE
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC------cCCCcCHHHccCCCcCCEE
Confidence 77777655542 4543 466777777776444444556777777777777763 2333334444555666666
Q ss_pred CCceeeecCCCCCCccccc
Q 040255 709 GIKKSMYFPGNEIPKWFRH 727 (869)
Q Consensus 709 ~~~~~~~~pg~~iP~w~~~ 727 (869)
+++.|.+ ..+|.++..
T Consensus 527 ~l~~N~l---~~~p~~~~~ 542 (606)
T 3vq2_A 527 DCSFNRI---ETSKGILQH 542 (606)
T ss_dssp ECTTSCC---CCEESCGGG
T ss_pred ECCCCcC---cccCHhHhh
Confidence 6666655 356665433
No 41
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=7.6e-16 Score=181.65 Aligned_cols=212 Identities=22% Similarity=0.212 Sum_probs=120.4
Q ss_pred CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecCCCcccccccc-------------ccc
Q 040255 485 PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMPCTKVEQLWDD-------------VQR 551 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~-------------~~~ 551 (869)
++|+.|++++|....+|. .+ ++|++|++++|.++.+...+.+|++|++++|+++.++.. +..
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l--~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~ 135 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LP--PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 135 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CC--TTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSC
T ss_pred CCCcEEEecCCCCCCCCC---cC--CCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCc
Confidence 566777776665555554 12 366677777766666633566666666666666533210 001
Q ss_pred CCCccCCCCCccEEEecCCCCCcccCccccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCC
Q 040255 552 LPSSLCTFKTPITFEIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLT 631 (869)
Q Consensus 552 lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~ 631 (869)
+|. .+++|++|+|++|. +..+|..+.+|+.|++++|.++.+| ..+++|+.|+|++| .+..+|.. +++|+
T Consensus 136 lp~---~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~ 204 (622)
T 3g06_A 136 LPV---LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDN-QLASLPTL---PSELY 204 (622)
T ss_dssp CCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCC---CTTCC
T ss_pred CCC---CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCC-CCCCCCCc---cchhh
Confidence 221 12455555555554 4445544555555555555555555 23466777777777 66666643 35667
Q ss_pred EEecCCCCCCcccCCCCcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCc
Q 040255 632 FLFISHCERLQTLPELPCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIK 711 (869)
Q Consensus 632 ~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 711 (869)
.|++++| .+..+|..+++|+.|++++| .+..+| ..+++|+.|++++|. +.. ++. .+..++.+++.
T Consensus 205 ~L~L~~N-~l~~l~~~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~------L~~-lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 205 KLWAYNN-RLTSLPALPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNR------LTS-LPM---LPSGLLSLSVY 269 (622)
T ss_dssp EEECCSS-CCSSCCCCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC------CSC-CCC---CCTTCCEEECC
T ss_pred EEECcCC-cccccCCCCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCC------CCc-CCc---ccccCcEEeCC
Confidence 7777763 45566666677777777764 555666 344667777777642 211 111 23456666666
Q ss_pred eeeecCCCCCCcccccCCC
Q 040255 712 KSMYFPGNEIPKWFRHQSM 730 (869)
Q Consensus 712 ~~~~~pg~~iP~w~~~~~~ 730 (869)
.|.+ ..||.+|.....
T Consensus 270 ~N~L---~~lp~~l~~l~~ 285 (622)
T 3g06_A 270 RNQL---TRLPESLIHLSS 285 (622)
T ss_dssp SSCC---CSCCGGGGGSCT
T ss_pred CCCC---CcCCHHHhhccc
Confidence 6666 377877765543
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=182.72 Aligned_cols=124 Identities=12% Similarity=0.127 Sum_probs=82.1
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccc-cCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeee
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCM-VSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLK 536 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~-~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~ 536 (869)
.++.+.+..+.. ..+.+..|.++++|++|++++|....+ |..+..++ +|++|++++|.++.+ ...+.+|++|+
T Consensus 22 ~L~~L~Ls~n~i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~lp~~~l~~L~~L~ 96 (520)
T 2z7x_B 22 KTTILNISQNYI---SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ--ELEYLDLSHNKLVKISCHPTVNLKHLD 96 (520)
T ss_dssp TCSEEECCSSCC---CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT--TCCEEECCSSCCCEEECCCCCCCSEEE
T ss_pred cccEEECCCCcc---cccChhhccccccccEEecCCCccCCcChHHhhccc--CCCEEecCCCceeecCccccCCccEEe
Confidence 445444444433 345667788888888888888776666 45677766 888888888888877 33778888888
Q ss_pred cCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCc-ccccc--chhccccccc
Q 040255 537 MPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPD-ELENL--EYLTVKGTTI 593 (869)
Q Consensus 537 L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~L--~~L~L~~n~i 593 (869)
+++|.++.+ .+|..++++++|++|+|++|. +....- .+++| ++|++++|.+
T Consensus 97 L~~N~l~~~-----~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFNAFDAL-----PICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCSSC-----CCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccccc-----cchhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeecccc
Confidence 888887632 345667777777777777776 322111 14444 5556655555
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=7.1e-16 Score=164.97 Aligned_cols=210 Identities=16% Similarity=0.212 Sum_probs=163.9
Q ss_pred eEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCCCCcc
Q 040255 488 RFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPI 563 (869)
Q Consensus 488 r~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~ 563 (869)
+.++.+++....+|.++ + ++|+.|++++|.+..+ ...+.+|++|++++|.++.+ .|..+.++++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~---~-~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~------~~~~~~~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---P-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI------DAAAFTGLALLE 83 (285)
T ss_dssp CEEECCSSCCSSCCTTC---C-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CTTTTTTCTTCC
T ss_pred eEEEcCcCCcccCCcCC---C-CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee------CHhhcCCccCCC
Confidence 45666665555666543 3 5999999999999887 45678999999999998743 356788999999
Q ss_pred EEEecCCCCCcccCcc----ccccchhcccccccccC-CCCcCCccccceecccccccccccCcc-ccCCCCCCEEecCC
Q 040255 564 TFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISH 637 (869)
Q Consensus 564 ~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~ 637 (869)
+|+|++|..++.++.. +++|++|+|++|.++.+ |..+..+++|++|+|++| .+..+|.. ++.+++|+.|+|++
T Consensus 84 ~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCC
Confidence 9999999867777543 88999999999999977 667899999999999999 78888765 89999999999999
Q ss_pred CCCCcccCCC----CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCcee
Q 040255 638 CERLQTLPEL----PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKS 713 (869)
Q Consensus 638 c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 713 (869)
| .+..+|.. +++|+.|++++|......|..+.++++|+.|++++|. +..+.+..+..+..++.+++..|
T Consensus 163 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 163 N-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN------LSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CSCCCHHHHTTCTTCCEEECCSS
T ss_pred C-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc------CCcCCHHHcccCcccCEEeccCC
Confidence 6 45666653 5789999999976555557789999999999998853 32222233344556666666655
Q ss_pred ee
Q 040255 714 MY 715 (869)
Q Consensus 714 ~~ 715 (869)
.+
T Consensus 236 ~~ 237 (285)
T 1ozn_A 236 PW 237 (285)
T ss_dssp CE
T ss_pred Cc
Confidence 54
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=191.29 Aligned_cols=132 Identities=13% Similarity=0.170 Sum_probs=72.5
Q ss_pred eecccccccCCcceEEEEcCC-CCccc-cCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGD-KNKCM-VSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDD 548 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~-~~~~~-~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~ 548 (869)
.+.+..|.++++|++|++++| ....+ |..+..++ +|++|++++|.+..+ +..+.+|++|+|++|.++.
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~---- 111 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP--NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD---- 111 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT--TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS----
T ss_pred ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC--CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc----
Confidence 455666777777777777765 23344 34555555 777777777776655 4456677777777776652
Q ss_pred cccCCCc--cCCCCCccEEEecCCCCCcccCc-c---ccccchhccccccccc-CCCCcCCc--cccceeccccc
Q 040255 549 VQRLPSS--LCTFKTPITFEIIDCKMLERLPD-E---LENLEYLTVKGTTIRE-LPESLGRL--SWVKRLILSNN 614 (869)
Q Consensus 549 ~~~lp~~--~~~l~~L~~L~L~~~~~l~~lp~-~---l~~L~~L~L~~n~i~~-lP~~i~~l--~~L~~L~Ls~n 614 (869)
.+|.. +.++++|++|+|++|...+..|. . +++|++|+|++|.++. .|..++.+ ++|+.|+|++|
T Consensus 112 --~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 112 --AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp --CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred --ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 12222 55556666666666552222221 1 5555555555555543 23334333 34444444444
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.1e-15 Score=181.23 Aligned_cols=195 Identities=16% Similarity=0.129 Sum_probs=98.6
Q ss_pred eecccccccCCcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCccccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~ 549 (869)
.+.+..|+++++|+.|++++|....+|+. +..++ +|++|++++|.+..+ +..+.+|+.|+|++|.++.
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~----- 161 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER----- 161 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-----
T ss_pred CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC--CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-----
Confidence 34445566666666666665554444443 34443 666666666665555 1345566666666665542
Q ss_pred ccCCCccCCCCCccEEEecCCCCCcccCcc-ccccchhccccccccc-------------------CCCCcCCcccccee
Q 040255 550 QRLPSSLCTFKTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIRE-------------------LPESLGRLSWVKRL 609 (869)
Q Consensus 550 ~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~-------------------lP~~i~~l~~L~~L 609 (869)
..|..+.++++|++|+|++|. +..+|.. +++|+.|++++|.++. +|..+ .++|+.|
T Consensus 162 -~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L 237 (597)
T 3oja_B 162 -IEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTIL 237 (597)
T ss_dssp -CCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEE
T ss_pred -CChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEE
Confidence 223345566666666666665 4444433 4444444443333332 22111 1344555
Q ss_pred cccccccccccCccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 610 ILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 610 ~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
+|++| .+... ..++.+++|+.|+|++|...+..|.. +++|+.|++++| .+..+|..+..+++|+.|++++|
T Consensus 238 ~L~~n-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 238 KLQHN-NLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp ECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS
T ss_pred ECCCC-CCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC
Confidence 55555 33332 34555566666666655444433432 345555566553 44455555555556666665553
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=5.3e-16 Score=182.04 Aligned_cols=170 Identities=17% Similarity=0.209 Sum_probs=131.9
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
.++.+.+..+.. ..+.+..|.++++|++|++++|....+++ .+..++ +|++|++++|.+..+ ...+.+|+
T Consensus 27 ~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 27 AMKSLDLSFNKI---TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG--SLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TCCEEECCSSCC---CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CccEEECcCCcc---CccChhhhhcCCcccEEECCCCCcCccChhhccccc--cCCEEECCCCccCccCHHHhccCCCCc
Confidence 455555554443 35667889999999999999988777764 567766 999999999999887 45789999
Q ss_pred eeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccc-cCCCCcCCccccce
Q 040255 534 SLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIR-ELPESLGRLSWVKR 608 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~-~lP~~i~~l~~L~~ 608 (869)
+|++++|.++.+ ..|..+.++++|++|++++|..++.+|.. +++|++|++++|.++ .+|..++.+++|+.
T Consensus 102 ~L~Ls~n~l~~~-----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 102 YLNLMGNPYQTL-----GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp EEECTTCCCSSS-----CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred EEECCCCccccc-----chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 999999998732 34567889999999999999878888854 889999999999998 46888888877777
Q ss_pred ecccccccccccCccc-cCCCCCCEEecCCCC
Q 040255 609 LILSNNSNLERIPESI-RHLSKLTFLFISHCE 639 (869)
Q Consensus 609 L~Ls~n~~l~~lP~~i-~~L~~L~~L~L~~c~ 639 (869)
|++++| .+..+|..+ ..+++|++|++++|+
T Consensus 177 L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 177 LTLHLS-ESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEECS-BSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred EecccC-cccccchhhHhhcccccEEEccCCc
Confidence 777777 555555442 445666666666543
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=7.5e-16 Score=169.66 Aligned_cols=212 Identities=17% Similarity=0.212 Sum_probs=128.4
Q ss_pred ccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCC-CCcc--ccccccceeeecCCCcccccccccccCCCcc
Q 040255 480 AFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCP-LKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSL 556 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~-l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~ 556 (869)
.|.++++|++|++++|....++. +..++ +|+.|++++|+ +..+ ...+.+|++|++++|.+..+ + .+
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~-~~~l~--~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~-~~ 173 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP-LANLT--KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-------T-PI 173 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG-GTTCT--TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-------G-GG
T ss_pred HHcCCCcCCEEECcCCcccCchh-hccCC--ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-------h-hh
Confidence 57777788888887766555554 55554 77777777774 3333 45566777777777776532 1 15
Q ss_pred CCCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEe
Q 040255 557 CTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLF 634 (869)
Q Consensus 557 ~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~ 634 (869)
..+++|+.|++++|. +..+|.. +++|+.|++++|.+..++. +..+++|++|++++| .+..+|. +..+++|+.|+
T Consensus 174 ~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 249 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLE 249 (347)
T ss_dssp GGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred ccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEE
Confidence 566677777777775 5555544 6667777777777666554 666677777777777 6666665 66677777777
Q ss_pred cCCCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCce
Q 040255 635 ISHCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKK 712 (869)
Q Consensus 635 L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 712 (869)
+++|. +..++.. +++|+.|++++| .+..+| .+..+++|+.|++++|. +....+..+..+..++.+++..
T Consensus 250 l~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~------l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 250 IGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQ------LGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC------CCGGGHHHHHTCTTCSEEECCS
T ss_pred CCCCc-cCCChhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCc------CCCcChhHhhccccCCEEEccC
Confidence 77653 3444432 456677777665 444443 35566667777766642 2222223333344555555554
Q ss_pred eee
Q 040255 713 SMY 715 (869)
Q Consensus 713 ~~~ 715 (869)
|.+
T Consensus 321 n~l 323 (347)
T 4fmz_A 321 NHI 323 (347)
T ss_dssp SSC
T ss_pred Ccc
Confidence 444
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=1.2e-15 Score=179.75 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=98.4
Q ss_pred ccccchhccccccccc-CCCCcCCccccceecccccccccccC---ccccCCCCCCEEecCCCCCCcccCCC----Cccc
Q 040255 580 LENLEYLTVKGTTIRE-LPESLGRLSWVKRLILSNNSNLERIP---ESIRHLSKLTFLFISHCERLQTLPEL----PCNL 651 (869)
Q Consensus 580 l~~L~~L~L~~n~i~~-lP~~i~~l~~L~~L~Ls~n~~l~~lP---~~i~~L~~L~~L~L~~c~~l~~lp~~----~~~L 651 (869)
+++|++|++++|.++. +|..++.+++|+.|+|++| .+..+| ..++.+++|+.|++++|.....+|.. +++|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 5678888999999885 6888899999999999998 777654 56888999999999987766557753 5788
Q ss_pred ceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCceeeecCCCCCCcc-cccCC
Q 040255 652 GLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKW-FRHQS 729 (869)
Q Consensus 652 ~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP~w-~~~~~ 729 (869)
+.|++++|...+.+|..+. ++|+.|++++|.- .. ++.....+..++.+++..|.+ ..+|.. |..-.
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l------~~-ip~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~ 497 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI------MS-IPKDVTHLQALQELNVASNQL---KSVPDGVFDRLT 497 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC------CC-CCTTTTSSCCCSEEECCSSCC---CCCCTTSTTTCT
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcC------cc-cChhhcCCCCCCEEECCCCCC---CCCCHHHHhcCC
Confidence 8888888765566665543 5788888887532 21 222223566677777777776 467776 54433
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=4.7e-16 Score=174.32 Aligned_cols=214 Identities=16% Similarity=0.202 Sum_probs=160.2
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcC-CCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHL-EGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l-~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
.++.+.+..+.. ..+.+..|+++++|+.|++++|....+|..+ ..++ +|++|++++|.+..+ ...+.+|+
T Consensus 94 ~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 94 TIQKLYMGFNAI---RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP--KLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred CcCEEECCCCCC---CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCC--CCcEEECCCCccCccChhhccCCCCCC
Confidence 445444444433 3566778899999999999998888888764 5555 899999999988777 44678899
Q ss_pred eeecCCCcccccccccccCCC------------ccCCCCCccEEEecCCCCCcccCcc-ccccchhcccccccccCCCCc
Q 040255 534 SLKMPCTKVEQLWDDVQRLPS------------SLCTFKTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELPESL 600 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~------------~~~~l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP~~i 600 (869)
.|++++|.++.+. ...+|. .+...++|+.|++++|. +..+|.. +++|+.|++++|.++.+ +.+
T Consensus 169 ~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~n~l~~~-~~l 244 (390)
T 3o6n_A 169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDT-AWL 244 (390)
T ss_dssp EEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECCCCSSCCEEECCSSCCCCC-GGG
T ss_pred EEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCe-eeeccccccccccEEECCCCCCccc-HHH
Confidence 9999999887542 112221 12234567777777776 6666665 77899999999999876 478
Q ss_pred CCccccceeccccccccccc-CccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccce
Q 040255 601 GRLSWVKRLILSNNSNLERI-PESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVL 676 (869)
Q Consensus 601 ~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 676 (869)
+.+++|++|+|++| .+..+ |..+..+++|+.|+|++| .+..+|.. +++|+.|++++| .+..+|..+..+++|+
T Consensus 245 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 245 LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE 321 (390)
T ss_dssp GGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred cCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCC
Confidence 88999999999999 55554 777899999999999985 45666654 578999999886 6778888788888899
Q ss_pred EEeccCCC
Q 040255 677 YVNLCNFL 684 (869)
Q Consensus 677 ~l~l~~~~ 684 (869)
.|++++|.
T Consensus 322 ~L~L~~N~ 329 (390)
T 3o6n_A 322 NLYLDHNS 329 (390)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 99988754
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=1.6e-15 Score=178.62 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=64.9
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCcccc-CcCCCCCCCCeeEEecCCCCCCcc-ccccccceeee
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMV-SHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLK 536 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~-~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~ 536 (869)
.++.+.+..+.+ ..+.+..|.++++|++|++++|....++ ..+..++ +|++|++++|.++.+ ...+.+|++|+
T Consensus 53 ~L~~L~Ls~N~i---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~lp~~~l~~L~~L~ 127 (562)
T 3a79_B 53 RTKALSLSQNSI---SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ--DLEYLDVSHNRLQNISCCPMASLRHLD 127 (562)
T ss_dssp TCCEEECCSSCC---CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT--TCCEEECTTSCCCEECSCCCTTCSEEE
T ss_pred CcCEEECCCCCc---cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC--CCCEEECCCCcCCccCccccccCCEEE
Confidence 344444443333 3456677788888888888877666653 4456665 788888888887777 33677788888
Q ss_pred cCCCcccccccccccCCCccCCCCCccEEEecCCC
Q 040255 537 MPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCK 571 (869)
Q Consensus 537 L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~ 571 (869)
+++|+++.+. +|..+.++++|++|+|++|.
T Consensus 128 Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 128 LSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCSSCCSBCC-----CCGGGGGCTTCCEEEEECSB
T ss_pred CCCCCccccC-----chHhhcccCcccEEecCCCc
Confidence 8888776432 23345555555555555554
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=3e-15 Score=164.77 Aligned_cols=211 Identities=14% Similarity=0.223 Sum_probs=157.5
Q ss_pred ccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccC
Q 040255 480 AFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLC 557 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~ 557 (869)
.+..+++|++|++++|....++. +..++ +|++|++++|.+..+ ...+.+|++|++++|.++.+ |. +.
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~-~~~l~--~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-------~~-~~ 129 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISP-LSNLV--KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-------SP-LA 129 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCT--TCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-------GG-GT
T ss_pred hhhhcCCccEEEccCCccccchh-hhcCC--cCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-------hh-hc
Confidence 47889999999999887776666 66665 999999999998888 56788999999999988743 32 67
Q ss_pred CCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEec
Q 040255 558 TFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFI 635 (869)
Q Consensus 558 ~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L 635 (869)
.+++|+.|++++|..+..++.. +++|++|++++|.+..++. ++.+++|+.|++++| .+..+|. +..+++|+.|++
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTA 206 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEEC
T ss_pred cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeec
Confidence 8888999999998767776665 8888899999888887765 788888999999888 7777775 888888888888
Q ss_pred CCCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCcee
Q 040255 636 SHCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKS 713 (869)
Q Consensus 636 ~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 713 (869)
++|.. ..++.. +++|+.|++++| .+..+|. +..+++|+.|++++|.-... ..+..+..++.+++..+
T Consensus 207 ~~n~l-~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 207 YVNQI-TDITPVANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTNQISDI--------NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CSSCC-CCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEECCSS
T ss_pred ccCCC-CCCchhhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCCccCCC--------hhHhcCCCcCEEEccCC
Confidence 88643 333322 578888888886 4555554 77788888888877543321 12233455665555555
Q ss_pred ee
Q 040255 714 MY 715 (869)
Q Consensus 714 ~~ 715 (869)
.+
T Consensus 276 ~l 277 (347)
T 4fmz_A 276 QI 277 (347)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 52
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=5.9e-16 Score=167.60 Aligned_cols=185 Identities=17% Similarity=0.252 Sum_probs=148.0
Q ss_pred cccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 481 FSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
+..+++|+.|+++++....++ ++..++ +|++|++++|.+..+ ...+.+|++|++++|.++.+ | .+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~--~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~-------~-~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLN--NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-------S-AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCT--TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC-------G-GGTT
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccC--CCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc-------h-hhcC
Confidence 456888999999887666665 566665 899999999988877 56678899999999988743 3 5778
Q ss_pred CCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecC
Q 040255 559 FKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFIS 636 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~ 636 (869)
+++|+.|+|++|. +..+|.. +++|++|++++|.++.+|. ++.+++|+.|+|++| .+..+|. +..+++|+.|+++
T Consensus 106 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKAD 181 (308)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECC
Confidence 8899999999987 6777765 8889999999999988876 888999999999999 7888876 8889999999999
Q ss_pred CCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 637 HCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 637 ~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
+|. +..+|.. +++|+.|++++| .+..++ .+..+++|+.+++++|
T Consensus 182 ~n~-l~~~~~l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 182 DNK-ISDISPLASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp SSC-CCCCGGGGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEE
T ss_pred CCc-cCcChhhcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCC
Confidence 864 4556543 678888998886 455665 3788888888888774
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.4e-16 Score=183.84 Aligned_cols=207 Identities=15% Similarity=0.138 Sum_probs=150.1
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeec
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKM 537 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L 537 (869)
.+++.+.+..+.+ ..+.+..|.++++|++|++++|.....++ +..++ +|++|++++|.+..+.. .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~--~L~~L~Ls~N~l~~l~~-~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD-LESLS--TLRTLDLNNNYVQELLV-GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCC---CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCT--TCCEEECCSSEEEEEEE-CTTCCEEEC
T ss_pred CCccEEEeeCCcC---CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCC--CCCEEEecCCcCCCCCC-CCCcCEEEC
Confidence 3566555555443 34667788888888888888877665554 66665 88888888888777632 278888888
Q ss_pred CCCcccccccccccCCCccCCCCCccEEEecCCCCCccc-Ccc---ccccchhccccccccc-CCCCcC-Cccccceecc
Q 040255 538 PCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERL-PDE---LENLEYLTVKGTTIRE-LPESLG-RLSWVKRLIL 611 (869)
Q Consensus 538 ~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-p~~---l~~L~~L~L~~n~i~~-lP~~i~-~l~~L~~L~L 611 (869)
++|.++.+.. ..+++|+.|+|++|. +..+ |.. +++|++|+|++|.++. .|..+. .+++|++|+|
T Consensus 107 ~~N~l~~~~~---------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 107 ANNNISRVSC---------SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CSSCCCCEEE---------CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred cCCcCCCCCc---------cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 8888874422 235688888888887 4444 333 7888888888888885 466665 6888888888
Q ss_pred cccccccccCccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCC
Q 040255 612 SNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLK 685 (869)
Q Consensus 612 s~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~ 685 (869)
++| .+..+|. ...+++|+.|+|++|. +..+|.. +++|+.|++++| .+..+|..+..+++|+.+++++|+-
T Consensus 177 s~N-~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 177 QYN-FIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp TTS-CCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCC-ccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 888 7777764 4468888888888855 4556543 567888888884 5667888888888888888887543
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=8.2e-17 Score=175.16 Aligned_cols=207 Identities=16% Similarity=0.146 Sum_probs=154.2
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeec
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKM 537 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L 537 (869)
.+++.+.+..+.. ..+.+..|.++++|+.|++++|.....++ +..++ +|++|++++|.++.+. ...+|+.|++
T Consensus 34 ~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~--~L~~L~Ls~n~l~~l~-~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPL---SQISAADLAPFTKLELLNLSSNVLYETLD-LESLS--TLRTLDLNNNYVQELL-VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCC---CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCT--TCCEEECCSSEEEEEE-ECTTCCEEEC
T ss_pred CCCCEEECcCCcc---CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcC--CCCEEECcCCcccccc-CCCCcCEEEC
Confidence 3566555555443 34566788889999999998877665554 66665 8999999988877663 2378889999
Q ss_pred CCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccC-CCCc-CCccccceecc
Q 040255 538 PCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESL-GRLSWVKRLIL 611 (869)
Q Consensus 538 ~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i-~~l~~L~~L~L 611 (869)
++|.++.+.. ..+++|+.|++++|. +..+++. +++|++|+|++|.++.+ |..+ ..+++|++|+|
T Consensus 107 ~~n~l~~~~~---------~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 107 ANNNISRVSC---------SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCSEEEE---------CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCCccCCcCc---------cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 9888875422 235678999999987 6666543 78899999999998865 4445 46889999999
Q ss_pred cccccccccCccccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCC
Q 040255 612 SNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLK 685 (869)
Q Consensus 612 s~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~ 685 (869)
++| .+..+|. ...+++|+.|+|++|. +..+|.. +++|+.|++++| .+..+|..+..+++|+.+++++|+-
T Consensus 177 ~~N-~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 177 QYN-FIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp TTS-CCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred CCC-cCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 998 7888864 3458899999999854 5566654 578888899885 6778888888888999999888543
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.2e-15 Score=180.95 Aligned_cols=230 Identities=12% Similarity=0.070 Sum_probs=156.2
Q ss_pred eeecccccccCCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccc
Q 040255 474 IHMNSYAFSKMPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDD 548 (869)
Q Consensus 474 ~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~ 548 (869)
..+++..|.++++|++|++++|....+++ .+..++ +|++|++++|.+..+ +..+.+|++|+|++|.++.
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---- 137 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH--TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS---- 137 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC--CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC----
Confidence 35667778889999999999887777665 666665 999999999998877 3568899999999998873
Q ss_pred cccCCCc-cCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCCcCCccccceecccccccccc----
Q 040255 549 VQRLPSS-LCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLER---- 619 (869)
Q Consensus 549 ~~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~---- 619 (869)
+|.. +.++++|++|+|++|. +..+|+. +++|++|+|++|.++.+| ++.+++|+.|++++| .+..
T Consensus 138 ---l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n-~l~~l~~~ 210 (597)
T 3oja_B 138 ---LPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLAIP 210 (597)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS-CCSEEECC
T ss_pred ---CCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC-ccccccCC
Confidence 4444 5788999999999997 5555543 788999999999988775 445566666555555 3433
Q ss_pred ---------------cCccccCCCCCCEEecCCCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEeccC
Q 040255 620 ---------------IPESIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 620 ---------------lP~~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
+|..+ .++|+.|+|++|... ..+.. +++|+.|++++|...+..|..++++++|+.|++++
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp TTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred chhheeeccCCccccccccc--CCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 33222 245666666665432 22322 56777777777654455566777788888888777
Q ss_pred CCCCCchhhhhhhhccccccccccccCCceeeecCCCCCCcccccCC
Q 040255 683 FLKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQS 729 (869)
Q Consensus 683 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP~w~~~~~ 729 (869)
|. +.. ++.....+..+..++++.|.+ ..+|.++..-.
T Consensus 288 N~------l~~-l~~~~~~l~~L~~L~Ls~N~l---~~i~~~~~~l~ 324 (597)
T 3oja_B 288 NR------LVA-LNLYGQPIPTLKVLDLSHNHL---LHVERNQPQFD 324 (597)
T ss_dssp SC------CCE-EECSSSCCTTCCEEECCSSCC---CCCGGGHHHHT
T ss_pred CC------CCC-CCcccccCCCCcEEECCCCCC---CccCcccccCC
Confidence 43 222 122233455677777777666 46787765433
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=8.6e-16 Score=177.15 Aligned_cols=220 Identities=14% Similarity=0.103 Sum_probs=172.3
Q ss_pred cCCcceEEEEcCCCCcccc-CcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 483 KMPKLRFLRFYGDKNKCMV-SHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~~~~~~-~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
.+++|+.|++++|....++ ..+..++ +|++|++++|.+... ...+++|+.|+|++|.++.+. ..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-----------~~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----------VG 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCT--TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----------EC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCC--CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----------CC
Confidence 4559999999998777665 4677776 999999999999876 667899999999999987432 23
Q ss_pred CCccEEEecCCCCCcccCcc-ccccchhcccccccccC-CCCcCCccccceecccccccccc-cCcccc-CCCCCCEEec
Q 040255 560 KTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIREL-PESLGRLSWVKRLILSNNSNLER-IPESIR-HLSKLTFLFI 635 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~l-P~~i~~l~~L~~L~Ls~n~~l~~-lP~~i~-~L~~L~~L~L 635 (869)
++|++|+|++|. +..+|.. +++|+.|+|++|.++.+ |..++.+++|++|+|++| .+.. .|..+. .+++|+.|+|
T Consensus 99 ~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 99 PSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEec
Confidence 799999999998 6666655 89999999999999976 678999999999999999 5554 666675 8999999999
Q ss_pred CCCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCcee
Q 040255 636 SHCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKS 713 (869)
Q Consensus 636 ~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 713 (869)
++|. +..+|.. +++|+.|++++| .+..+|..+..+++|+.|++++|. +.+ ++..+..+..+..+++..|
T Consensus 177 s~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~------l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 177 QYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK------LVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC------CCE-ECTTCCCCTTCCEEECTTC
T ss_pred CCCc-cccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc------Ccc-cchhhccCCCCCEEEcCCC
Confidence 9966 5555654 789999999985 677888889999999999999853 322 2333444556666666666
Q ss_pred eecCCCCCCccccc
Q 040255 714 MYFPGNEIPKWFRH 727 (869)
Q Consensus 714 ~~~pg~~iP~w~~~ 727 (869)
.+.. +.+|.|+..
T Consensus 248 ~l~c-~~~~~~~~~ 260 (487)
T 3oja_A 248 GFHC-GTLRDFFSK 260 (487)
T ss_dssp CBCH-HHHHHHHTT
T ss_pred CCcC-cchHHHHHh
Confidence 5521 256666654
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=7.9e-16 Score=167.35 Aligned_cols=225 Identities=13% Similarity=0.102 Sum_probs=169.0
Q ss_pred ccccccCCcceEEEEcCCCCcccc-CcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCC
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKCMV-SHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPS 554 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~~~-~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~ 554 (869)
...+..+++|+.|++++|....++ ..+..++ +|++|++++|.+... ...+.+|++|++++|.++.+.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~-------- 96 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-------- 96 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE--------
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc--------
Confidence 345667789999999988766665 3566666 999999999998776 567889999999999887432
Q ss_pred ccCCCCCccEEEecCCCCCcccCcc-ccccchhcccccccccC-CCCcCCccccceecccccccccccC-ccc-cCCCCC
Q 040255 555 SLCTFKTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIREL-PESLGRLSWVKRLILSNNSNLERIP-ESI-RHLSKL 630 (869)
Q Consensus 555 ~~~~l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~l-P~~i~~l~~L~~L~Ls~n~~l~~lP-~~i-~~L~~L 630 (869)
..++|++|++++|. +..+|.. +++|++|++++|.++.+ |..++.+++|++|+|++| .+..++ ..+ ..+++|
T Consensus 97 ---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 97 ---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTL 171 (317)
T ss_dssp ---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTC
T ss_pred ---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcC
Confidence 34789999999998 6666655 88999999999999977 457888999999999999 666654 445 478999
Q ss_pred CEEecCCCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhcccccccccccc
Q 040255 631 TFLFISHCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEER 708 (869)
Q Consensus 631 ~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 708 (869)
++|+|++|. +..+|.. +++|+.|++++| .+..+|..+..+++|+.|++++|.-. . ++..+..+..++.+
T Consensus 172 ~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~l~------~-l~~~~~~l~~L~~L 242 (317)
T 3o53_A 172 EHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV------L-IEKALRFSQNLEHF 242 (317)
T ss_dssp CEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCC------E-ECTTCCCCTTCCEE
T ss_pred CEEECCCCc-CcccccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCccc------c-hhhHhhcCCCCCEE
Confidence 999999865 5666654 788999999885 67778877888899999999885322 1 23334445667777
Q ss_pred CCceeeecCCCCCCccccc
Q 040255 709 GIKKSMYFPGNEIPKWFRH 727 (869)
Q Consensus 709 ~~~~~~~~pg~~iP~w~~~ 727 (869)
++..|.+.. +.+|.|+..
T Consensus 243 ~l~~N~~~~-~~~~~~~~~ 260 (317)
T 3o53_A 243 DLRGNGFHC-GTLRDFFSK 260 (317)
T ss_dssp ECTTCCCBH-HHHHHHHHT
T ss_pred EccCCCccC-cCHHHHHhc
Confidence 776665511 356666643
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.9e-15 Score=160.62 Aligned_cols=169 Identities=19% Similarity=0.268 Sum_probs=105.6
Q ss_pred cccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 481 FSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
+..+++|+.|+++++....++ ++..++ +|++|++++|.+..+ ...+.+|++|++++|.++.+ .+..+.+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~--~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~------~~~~~~~ 107 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLP--NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL------PNGVFDK 107 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCT--TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC------CTTTTTT
T ss_pred cccccceeeeeeCCCCccccc-ccccCC--CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc------ChhHhcC
Confidence 445667777777665443332 345554 777777777776666 44566777777777766522 2233566
Q ss_pred CCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCccccceecccccccccccCcc-ccCCCCCCE
Q 040255 559 FKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPES-IRHLSKLTF 632 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~ 632 (869)
+++|++|+|++|. +..+|.. +++|++|+|++|.++.+|.. ++.+++|+.|+|++| .+..+|.. ++.+++|+.
T Consensus 108 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 108 LTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCE
Confidence 7777777777776 5555543 56777777777777766543 466777777777777 56666554 466777777
Q ss_pred EecCCCCCCcccCCC---CcccceeecccCC
Q 040255 633 LFISHCERLQTLPEL---PCNLGLLSARNCT 660 (869)
Q Consensus 633 L~L~~c~~l~~lp~~---~~~L~~L~l~~c~ 660 (869)
|++++|+..+..|.. +++|+.|++.+|+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 777775543333322 4567777777654
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=176.05 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=61.4
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-----ccccccc
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-----NICAEKL 532 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-----~~~~~~L 532 (869)
.+++.+.+..++. ..+.+..|+++++|++|++++|....+|.. .+ ++|++|++++|.+..+ ...+.+|
T Consensus 45 ~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l--~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 45 SKLRILIISHNRI---QYLDISVFKFNQELEYLDLSHNKLVKISCH--PT--VNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp TTCCEEECCSSCC---CEEEGGGGTTCTTCCEEECCSSCCCEEECC--CC--CCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred ccccEEecCCCcc---CCcChHHhhcccCCCEEecCCCceeecCcc--cc--CCccEEeccCCccccccchhhhccCCcc
Confidence 3455555544443 356788999999999999999888888877 44 4999999999998764 4568889
Q ss_pred eeeecCCCccc
Q 040255 533 VSLKMPCTKVE 543 (869)
Q Consensus 533 ~~L~L~~n~l~ 543 (869)
++|++++|.++
T Consensus 118 ~~L~L~~n~l~ 128 (520)
T 2z7x_B 118 KFLGLSTTHLE 128 (520)
T ss_dssp CEEEEEESSCC
T ss_pred eEEEecCcccc
Confidence 99999888875
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=5.1e-15 Score=182.60 Aligned_cols=143 Identities=17% Similarity=0.276 Sum_probs=105.9
Q ss_pred cccccccceeeecccccccCCcceEEEEcCCCCccc-cCcCCCCCCCCeeEEecCCCCCCcc------ccccccceeeec
Q 040255 465 LDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCM-VSHLEGVPFAEVRHLEWPQCPLKTL------NICAEKLVSLKM 537 (869)
Q Consensus 465 l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~-~~~l~~l~~~~L~~L~l~~~~l~~l------~~~~~~L~~L~L 537 (869)
||++.+.....+.+.+|.++++|++|++++|....+ |..+..++ +|++|++++|.+... ...+.+|++|+|
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF--HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS--SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc--ccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence 344443224567788999999999999999877666 66777776 999999999998752 446899999999
Q ss_pred CCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---c--cccchhcccccccc-cCCCCcCCccc------
Q 040255 538 PCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---L--ENLEYLTVKGTTIR-ELPESLGRLSW------ 605 (869)
Q Consensus 538 ~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l--~~L~~L~L~~n~i~-~lP~~i~~l~~------ 605 (869)
++|.++.+ ..+..++++++|++|+|++|......|.. + ++|+.|+|++|.+. ..|..++.+++
T Consensus 131 s~N~l~~~-----~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 131 SKNQIRSL-----YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp ESCCCCCC-----CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CCCccccc-----ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 99998743 13346889999999999999844444444 3 67778888877776 45655555544
Q ss_pred cceeccccc
Q 040255 606 VKRLILSNN 614 (869)
Q Consensus 606 L~~L~Ls~n 614 (869)
|+.|+|++|
T Consensus 206 L~~L~Ls~n 214 (844)
T 3j0a_A 206 LEILDVSGN 214 (844)
T ss_dssp BSEEBCSSC
T ss_pred eeEEecCCC
Confidence 666666666
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=7.5e-15 Score=155.73 Aligned_cols=187 Identities=24% Similarity=0.289 Sum_probs=144.9
Q ss_pred CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCCC
Q 040255 485 PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFK 560 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~ 560 (869)
.+++.++++++....+|..+ + .+|+.|++++|.+..+ +..+.+|++|++++|.++.+.. ..+.+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~---~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~------~~~~~l~ 85 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI---P-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA------GIFKELK 85 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC---C-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT------TTTSSCT
T ss_pred CCCCEEEccCCCCCccCCCC---C-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh------hhhcCCC
Confidence 35667788776666666544 2 4788888888888777 4467889999999988874322 2357788
Q ss_pred CccEEEecCCCCCcccCcc----ccccchhcccccccccCCC-CcCCccccceecccccccccccCcc-ccCCCCCCEEe
Q 040255 561 TPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPE-SLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLF 634 (869)
Q Consensus 561 ~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~ 634 (869)
+|++|+|++|. +..+|.. +++|++|+|++|.++.+|. .++.+++|++|+|++| .+..+|.. +..+++|+.|+
T Consensus 86 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 86 NLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELR 163 (270)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeE
Confidence 99999999987 7777754 7889999999999997754 5688999999999999 78888876 78899999999
Q ss_pred cCCCCCCcccCCC----CcccceeecccCCCCccccC-CCCCCccceEEeccCCCC
Q 040255 635 ISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLK 685 (869)
Q Consensus 635 L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~ 685 (869)
|++|. +..+|.. +++|+.|++++| .+..+|. .+..+++|+.+++++|+-
T Consensus 164 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 164 LYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 99864 5556542 578899999886 5667766 578889999999988764
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=4.4e-15 Score=169.60 Aligned_cols=236 Identities=19% Similarity=0.168 Sum_probs=141.1
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeee
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLK 536 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~ 536 (869)
.++.+.+..+... .++ .|+++++|++|++++|....+|..+ .+|++|++++|.+..+ ...+.+|+.|+
T Consensus 132 ~L~~L~L~~n~l~---~lp--~~~~l~~L~~L~l~~N~l~~lp~~~-----~~L~~L~L~~n~l~~l~~~~~l~~L~~L~ 201 (454)
T 1jl5_A 132 LLEYLGVSNNQLE---KLP--ELQNSSFLKIIDVDNNSLKKLPDLP-----PSLEFIAAGNNQLEELPELQNLPFLTAIY 201 (454)
T ss_dssp TCCEEECCSSCCS---SCC--CCTTCTTCCEEECCSSCCSCCCCCC-----TTCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred CCCEEECcCCCCC---CCc--ccCCCCCCCEEECCCCcCcccCCCc-----ccccEEECcCCcCCcCccccCCCCCCEEE
Confidence 4454544444433 232 4788888888888877655555432 3677777777777666 44566777777
Q ss_pred cCCCccccccc-------------ccccCCCccCCCCCccEEEecCCCCCcccCccccccchhcccccccccCCCCcCCc
Q 040255 537 MPCTKVEQLWD-------------DVQRLPSSLCTFKTPITFEIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRL 603 (869)
Q Consensus 537 L~~n~l~~l~~-------------~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l 603 (869)
+++|.++.+.. .+..+| .++++++|++|++++|. +..+|..+++|++|++++|.++.+|.. +
T Consensus 202 l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N~l~~l~~~---~ 276 (454)
T 1jl5_A 202 ADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDLPEL---P 276 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSSCCSCCCCC---C
T ss_pred CCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCCcccccCcc---c
Confidence 77776654321 122455 36777778888888776 666776677788888888877777754 3
Q ss_pred cccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCCCcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 604 SWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPELPCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 604 ~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
++|+.|++++| .+..+|.. .++|+.|++++| .+..+|..+++|+.|++++| .+..+|.. +++|+.|++++|
T Consensus 277 ~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N-~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 277 QSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSN-EIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN 347 (454)
T ss_dssp TTCCEEECCSS-CCSEESCC---CTTCCEEECCSS-CCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS
T ss_pred CcCCEEECcCC-ccCcccCc---CCcCCEEECcCC-cCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEECCCC
Confidence 67777788777 66665531 245666666654 34445555566777777664 34455543 356667776654
Q ss_pred CCCCchhhhhhhhccccccccccccCCceeeecCCCCCCcccccC
Q 040255 684 LKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQ 728 (869)
Q Consensus 684 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP~w~~~~ 728 (869)
.-. . ++. .+..++.+++..|.+-.-+.+|.++.+-
T Consensus 348 ~l~------~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 348 HLA------E-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp CCS------C-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ccc------c-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 221 1 111 1345555555555551111566666543
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=9.8e-16 Score=166.21 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=151.2
Q ss_pred cCCcceEEEEcCCCCc-cccCcC--CCCCCCCeeEEecCCCCCCcc---cccc-----ccceeeecCCCccccccccccc
Q 040255 483 KMPKLRFLRFYGDKNK-CMVSHL--EGVPFAEVRHLEWPQCPLKTL---NICA-----EKLVSLKMPCTKVEQLWDDVQR 551 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~~~-~~~~~l--~~l~~~~L~~L~l~~~~l~~l---~~~~-----~~L~~L~L~~n~l~~l~~~~~~ 551 (869)
++++|+.|++++|... .+|..+ ..++ +|++|++++|.+..+ ...+ .+|++|+|++|+++. .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~------~ 164 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGP--DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN------F 164 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSC--CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC------C
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCC--CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc------c
Confidence 6999999999997665 567665 5554 999999999998876 2233 899999999999873 3
Q ss_pred CCCccCCCCCccEEEecCCCCCccc--C-----ccccccchhcccccccccCC---CC-cCCccccceeccccccccccc
Q 040255 552 LPSSLCTFKTPITFEIIDCKMLERL--P-----DELENLEYLTVKGTTIRELP---ES-LGRLSWVKRLILSNNSNLERI 620 (869)
Q Consensus 552 lp~~~~~l~~L~~L~L~~~~~l~~l--p-----~~l~~L~~L~L~~n~i~~lP---~~-i~~l~~L~~L~Ls~n~~l~~l 620 (869)
.|..+.++++|++|+|++|...+.+ | ..+++|++|+|++|.++.+| .. +..+++|+.|+|++| .+...
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 243 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDA 243 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSS
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcc
Confidence 3467889999999999999855542 2 22789999999999998543 22 357799999999999 67665
Q ss_pred C--ccccCCCCCCEEecCCCCCCcccCCCC-cccceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 621 P--ESIRHLSKLTFLFISHCERLQTLPELP-CNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 621 P--~~i~~L~~L~~L~L~~c~~l~~lp~~~-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
+ ..+..+++|++|+|++|. +..+|..+ ++|+.|++++| .++.+|. +..+++|+.+++++|+
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred cchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 4 456778999999999965 55888764 58999999985 6777777 8899999999998854
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=1.5e-15 Score=180.37 Aligned_cols=229 Identities=13% Similarity=0.118 Sum_probs=186.3
Q ss_pred cccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 481 FSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
|..+++|+.|+++++....+| .+..++ +|+.|++++|.+..+ .+.+.+|+.|++++|.... .+ .+..+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~-~l~~~~--~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~------~~--~~~~l 349 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE-DVPKHF--KWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI------SF--KKVAL 349 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC-CCCTTC--CCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCE------EC--CCCCC
T ss_pred cccCCCCCEEEecCccchhhh-hccccc--cCCEEEcccccCcccccCCCCccceeeccCCcCcc------ch--hhccC
Confidence 889999999999998887777 666665 999999999999777 4488999999999995431 12 56789
Q ss_pred CCccEEEecCCCCCccc---Ccc---ccccchhcccccccccCCCCcCCccccceecccccccccccC--ccccCCCCCC
Q 040255 560 KTPITFEIIDCKMLERL---PDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIP--ESIRHLSKLT 631 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~l---p~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP--~~i~~L~~L~ 631 (869)
++|++|++++|. +..+ |.. +++|++|++++|.++.+|..++.+++|+.|++++| .+..++ ..+..+++|+
T Consensus 350 ~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 350 PSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp TTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCC
T ss_pred CCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC-ccCCccChhhhhccccCC
Confidence 999999999997 5555 444 89999999999999999999999999999999999 666554 4689999999
Q ss_pred EEecCCCCCCcccCCC---CcccceeecccCCCCc-cccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccc
Q 040255 632 FLFISHCERLQTLPEL---PCNLGLLSARNCTSLE-KLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEE 707 (869)
Q Consensus 632 ~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 707 (869)
.|++++|...+..|.. +++|+.|++++|...+ .+|..+.++++|+.|++++| .+....+..+..+..++.
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n------~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC------QLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS------CCCEECTTTTTTCTTCCE
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC------cCCccChhhhcccccCCE
Confidence 9999998877767764 5789999999986555 37889999999999999985 333444455566778888
Q ss_pred cCCceeeecCCCCCCcccccCCC
Q 040255 708 RGIKKSMYFPGNEIPKWFRHQSM 730 (869)
Q Consensus 708 ~~~~~~~~~pg~~iP~w~~~~~~ 730 (869)
++++.|.+ .+.+|.+|..-..
T Consensus 502 L~Ls~N~l--~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 502 LNMSHNNL--LFLDSSHYNQLYS 522 (606)
T ss_dssp EECCSSCC--SCEEGGGTTTCTT
T ss_pred EECCCCcC--CCcCHHHccCCCc
Confidence 88887776 4556888866543
No 65
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.1e-15 Score=165.00 Aligned_cols=212 Identities=20% Similarity=0.177 Sum_probs=170.1
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCcc-ccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccc
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKC-MVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKL 532 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~-~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L 532 (869)
.++.+.|..+++ ..+++.+|.++++|+.|+|++|.... ++. .+..++ ..+..+.+..|.+..+ +..+.+|
T Consensus 31 ~l~~L~Ls~N~i---~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 31 NAIELRFVLTKL---RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TCSEEEEESCCC---SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCEEEccCCcC---CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCCcccccCchhhhhcccc
Confidence 345555554443 46788899999999999999987544 554 345665 3344567777888877 4568899
Q ss_pred eeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc-----ccccchhcccccccccCCCCcCCccccc
Q 040255 533 VSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE-----LENLEYLTVKGTTIRELPESLGRLSWVK 607 (869)
Q Consensus 533 ~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-----l~~L~~L~L~~n~i~~lP~~i~~l~~L~ 607 (869)
+.|++++|+++.+. +..+....++..|++.++..+..+|.. ...|+.|+|++|.|+++|..+...++|+
T Consensus 107 ~~L~l~~n~l~~~~------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 107 QYLLISNTGIKHLP------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180 (350)
T ss_dssp CEEEEEEECCSSCC------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEE
T ss_pred ccccccccccccCC------chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchh
Confidence 99999999987432 224456678899999988889988875 3468899999999999999998999999
Q ss_pred eecccccccccccCcc-ccCCCCCCEEecCCCCCCcccCCC-CcccceeecccCCCCccccCCCCCCccceEEeccC
Q 040255 608 RLILSNNSNLERIPES-IRHLSKLTFLFISHCERLQTLPEL-PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 608 ~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
.|++++|+.++.+|.. +..+++|+.|+|++| .+..+|.. +.+|+.|.+.+|.+++.+|. +.++++|+.+++.+
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 9999976699999976 699999999999985 68889875 88999999999999999994 78889999888765
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=4.3e-15 Score=157.76 Aligned_cols=178 Identities=20% Similarity=0.281 Sum_probs=97.0
Q ss_pred ccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCc
Q 040255 480 AFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSS 555 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~ 555 (869)
.+..+++|+.|++++|....++ .+..++ +|++|++++|.+..+ ...+.+|++|++++|+++.+ .+..
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~-~l~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~ 128 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDIS-ALKELT--NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL------PDGV 128 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCG-GGTTCT--TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC------CTTT
T ss_pred ccccCCCCcEEECCCCCCCCch-hhcCCC--CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc------CHHH
Confidence 3555666666666655444332 344443 666666666665555 23455666666666665521 1223
Q ss_pred cCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCccccceecccccccccccCcc-ccCCCC
Q 040255 556 LCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPES-IRHLSK 629 (869)
Q Consensus 556 ~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~ 629 (869)
+.++++|++|+|++|. +..+|.. +++|++|++++|.++.+|.. ++.+++|+.|+|++| .+..+|.. +..+++
T Consensus 129 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred hccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcC
Confidence 4556666666666664 4455442 55666666666666655433 355666666666666 45444443 456666
Q ss_pred CCEEecCCCCCCcccCCCCcccceeecccCCCCccccCCCCCC
Q 040255 630 LTFLFISHCERLQTLPELPCNLGLLSARNCTSLEKLPAGLSSM 672 (869)
Q Consensus 630 L~~L~L~~c~~l~~lp~~~~~L~~L~l~~c~~l~~lp~~~~~l 672 (869)
|+.|+|++|+..... ++|+.|++..+...+.+|..++.+
T Consensus 207 L~~L~l~~N~~~~~~----~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 207 LQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCEEECCSSCBCCCT----TTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCEEEccCCCccccC----cHHHHHHHHHHhCCCcccCccccc
Confidence 666666665443332 245555555555555555555444
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=4.6e-15 Score=157.81 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=151.0
Q ss_pred CcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 485 PKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
++|+.|++++|....++. .+..++ +|++|++++|.+..+ ...+.+|++|++++|.++.+ .|..+.++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL------ALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT--TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTTTTTC
T ss_pred CCccEEECCCCcccccCHhHhcccc--CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc------ChhhhcCC
Confidence 479999999887777766 566665 899999999988877 44678999999999998743 34568889
Q ss_pred CCccEEEecCCCCCcccCcc----ccccchhccccccccc--CCCCcCCccccceecccccccccccCc-cccCCCCCC-
Q 040255 560 KTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRE--LPESLGRLSWVKRLILSNNSNLERIPE-SIRHLSKLT- 631 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~--lP~~i~~l~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~- 631 (869)
++|++|++++|. +..++.. +++|++|++++|.++. +|..++.+++|++|+|++| .+..+|. .+..+++|+
T Consensus 100 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 100 SSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred ccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccc
Confidence 999999999998 6666653 8899999999999986 6889999999999999999 7777764 566666666
Q ss_pred ---EEecCCCCCCcccCCC---CcccceeecccCCCCccccC-CCCCCccceEEeccCCCCC
Q 040255 632 ---FLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLKL 686 (869)
Q Consensus 632 ---~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~~ 686 (869)
.|++++|. +..+|.. ..+|+.|++++| .++.+|. .+.++++|+.+++++|+-.
T Consensus 178 l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 178 LNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCEEEECCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cceeeecCCCc-ccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCccc
Confidence 89999855 5556543 347999999986 4777776 4688999999999886544
No 68
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=2.9e-15 Score=174.62 Aligned_cols=175 Identities=22% Similarity=0.289 Sum_probs=145.9
Q ss_pred cceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecCCCcccccccccccCCCccCCCCCccEE
Q 040255 486 KLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITF 565 (869)
Q Consensus 486 ~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L 565 (869)
+|+.|++++|....+|..+. ++|++|++++|.++.+...+.+|+.|+|++|+++. +|. +.+ +|+.|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~----~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-------ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP----PQITVLEITQNALISLPELPASLEYLDACDNRLST-------LPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC----TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-------CCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCCccCHhHc----CCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-------cch-hhc--CCCEE
Confidence 89999999887777776552 48999999999988775557899999999999873 454 444 89999
Q ss_pred EecCCCCCcccCccccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccC
Q 040255 566 EIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLP 645 (869)
Q Consensus 566 ~L~~~~~l~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp 645 (869)
+|++|. +..+|..+++|++|+|++|.|+.+|. .+++|++|+|++| .++.+|. +. ++|+.|+|++| .+..+|
T Consensus 126 ~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp 196 (571)
T 3cvr_A 126 DVDNNQ-LTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN-LLESLP 196 (571)
T ss_dssp ECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CCSSCC
T ss_pred ECCCCc-CCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC-CCCchh
Confidence 999998 77788888899999999999999987 5789999999999 8888998 66 89999999986 566888
Q ss_pred CCCccc-------ceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 646 ELPCNL-------GLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 646 ~~~~~L-------~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
....+| +.|++++| .+..+|..+.++++|+.|++++|+
T Consensus 197 ~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 197 AVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred hHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 855578 99999985 678899988889999999999853
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=5.7e-15 Score=169.57 Aligned_cols=192 Identities=18% Similarity=0.246 Sum_probs=114.7
Q ss_pred cccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCC-----
Q 040255 481 FSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLP----- 553 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp----- 553 (869)
|.++++|++|++++|....+++ +..++ +|++|++++|.+..+ ...+.+|++|++++|.+..+.. +..++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~--~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLT--NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCT--TCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCC--CCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEe
Confidence 6777777777777766555555 55554 777777777777666 4566777777777776654421 11111
Q ss_pred ---------CccCCCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCc
Q 040255 554 ---------SSLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPE 622 (869)
Q Consensus 554 ---------~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~ 622 (869)
..+.++++|+.|++++|. +..++.. +++|++|++++|.++.+++ ++.+++|+.|++++| .+..+|
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~- 237 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIG- 237 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-
T ss_pred ecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCC-Ccccch-
Confidence 125666777777777776 5555544 6677777777777665543 566666666666666 555554
Q ss_pred cccCCCCCCEEecCCCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 623 SIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 623 ~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
.+..+++|+.|++++|... .++.. +++|+.|++++| .+..+|. +..+++|+.|++++|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN 297 (466)
T ss_dssp GGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS
T ss_pred hhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCC
Confidence 4566666666666665432 22221 455666666554 2333333 445555555555543
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=6.6e-15 Score=169.08 Aligned_cols=158 Identities=17% Similarity=0.250 Sum_probs=74.0
Q ss_pred CeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccchh
Q 040255 511 EVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYL 586 (869)
Q Consensus 511 ~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L 586 (869)
+|++|++++|.+..+ ...+.+|+.|++++|.++.+ + .+..+++|+.|++++|. +..++.. +++|++|
T Consensus 200 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-------~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L 270 (466)
T 1o6v_A 200 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-------G-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTEL 270 (466)
T ss_dssp TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-------G-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred CCCEEEecCCcccccccccccCCCCEEECCCCCcccc-------h-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEE
Confidence 444444444444333 22334444444444444321 1 23445555555555554 3333322 4555555
Q ss_pred cccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCC-CCcccceeecccCCCCccc
Q 040255 587 TVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPE-LPCNLGLLSARNCTSLEKL 665 (869)
Q Consensus 587 ~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~-~~~~L~~L~l~~c~~l~~l 665 (869)
++++|.++.+|. +..+++|+.|+|++| .+..+|. ++.+++|+.|+|++|+..+..|- .+++|+.|++.+| .+..+
T Consensus 271 ~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~ 346 (466)
T 1o6v_A 271 KLGANQISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDV 346 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred ECCCCccCcccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCc
Confidence 555555555443 555555555555555 4444443 55555555555555433222221 1445555555554 33333
Q ss_pred cCCCCCCccceEEeccC
Q 040255 666 PAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 666 p~~~~~l~~L~~l~l~~ 682 (869)
+ .+.++++|+.+++++
T Consensus 347 ~-~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 347 S-SLANLTNINWLSAGH 362 (466)
T ss_dssp G-GGTTCTTCCEEECCS
T ss_pred h-hhccCCCCCEEeCCC
Confidence 2 345555555555554
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=171.35 Aligned_cols=236 Identities=14% Similarity=0.203 Sum_probs=172.1
Q ss_pred CcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCc-cCC
Q 040255 485 PKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSS-LCT 558 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~-~~~ 558 (869)
++|+.|++++|....++. .+..++ +|++|++++|.+..+ +..+.+|++|++++|+++. +|.. +.+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~ 122 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCV--NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-------LSSSWFKP 122 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-------CCHHHHTT
T ss_pred ccCcEEECCCCcCcccCHHHhccCC--CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-------CCHhHhCC
Confidence 589999999988777776 566665 999999999998877 4567899999999999874 3433 778
Q ss_pred CCCccEEEecCCCCCcccCc-c----ccccchhccccc-ccccC-CCCcCCccccceeccccccccccc-CccccCCCCC
Q 040255 559 FKTPITFEIIDCKMLERLPD-E----LENLEYLTVKGT-TIREL-PESLGRLSWVKRLILSNNSNLERI-PESIRHLSKL 630 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~-~----l~~L~~L~L~~n-~i~~l-P~~i~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~L 630 (869)
+++|++|+|++|. +..+|. . +++|++|++++| .++.+ |..++.+++|++|++++| .+..+ |..++.+++|
T Consensus 123 l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 123 LSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNV 200 (353)
T ss_dssp CTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEE
T ss_pred CccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccC
Confidence 9999999999997 778887 2 889999999998 57766 568899999999999999 55554 7789999999
Q ss_pred CEEecCCCCCCcccCCC----CcccceeecccCCCCccccC-CC---CCCccceEEeccCCCCCCchhhhhhhhcccccc
Q 040255 631 TFLFISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPA-GL---SSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKH 702 (869)
Q Consensus 631 ~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~-~~---~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~ 702 (869)
++|++++|. ++.+|.. +++|+.|++++|. +..++. .+ .....++.++++.+.- ..+.+. .++..+..+
T Consensus 201 ~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l-~~~~l~-~l~~~l~~l 276 (353)
T 2z80_A 201 SHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKI-TDESLF-QVMKLLNQI 276 (353)
T ss_dssp EEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBC-CHHHHH-HHHHHHHTC
T ss_pred CeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccc-cCcchh-hhHHHHhcc
Confidence 999999865 5677753 6789999999864 443332 22 2345566667665321 122222 233444556
Q ss_pred ccccccCCceeeecCCCCCCccc-ccCCCCCeEEEecCC
Q 040255 703 SLYEERGIKKSMYFPGNEIPKWF-RHQSMGSSATLKTRP 740 (869)
Q Consensus 703 ~~l~~~~~~~~~~~pg~~iP~w~-~~~~~g~~i~i~lp~ 740 (869)
..++.++++.|.+ ..+|.++ ..-.. --.+.+..
T Consensus 277 ~~L~~L~Ls~N~l---~~i~~~~~~~l~~--L~~L~L~~ 310 (353)
T 2z80_A 277 SGLLELEFSRNQL---KSVPDGIFDRLTS--LQKIWLHT 310 (353)
T ss_dssp TTCCEEECCSSCC---CCCCTTTTTTCTT--CCEEECCS
T ss_pred cCCCEEECCCCCC---CccCHHHHhcCCC--CCEEEeeC
Confidence 6777788887777 4788764 44332 33444443
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=177.68 Aligned_cols=221 Identities=14% Similarity=0.179 Sum_probs=130.6
Q ss_pred ecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeeecCCCcccccccccccCCC
Q 040255 476 MNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPS 554 (869)
Q Consensus 476 ~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~ 554 (869)
..+..|..+++|+.|+++++....+|..+..+ +|+.|++++|.+..+ ...+.+|+.|++++|.+... .+
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~---~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~------~~- 342 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF---GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA------FS- 342 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC---CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB------CC-
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC---CccEEeeccCcccccCcccccccCEEeCcCCccccc------cc-
Confidence 34566777788888888776666666655443 677777777777666 44566677777766665421 11
Q ss_pred ccCCCCCccEEEecCCCCCccc---Ccc---ccccchhcccccccccCCCCcCCccccceecccccccccccCc--cccC
Q 040255 555 SLCTFKTPITFEIIDCKMLERL---PDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPE--SIRH 626 (869)
Q Consensus 555 ~~~~l~~L~~L~L~~~~~l~~l---p~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~--~i~~ 626 (869)
...+++|+.|++++|. +..+ |.. +++|++|++++|.+..+|..++.+++|+.|++++| .+..++. .+..
T Consensus 343 -~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 419 (570)
T 2z63_A 343 -EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLS 419 (570)
T ss_dssp -CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTT
T ss_pred -cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCC-ccccccchhhhhc
Confidence 1456666677776665 4333 222 56666666666666666555666666666666666 4444432 4566
Q ss_pred CCCCCEEecCCCCCCcccCCC---CcccceeecccCCCC-ccccCCCCCCccceEEeccCCCCCCchhhhhhhhcccccc
Q 040255 627 LSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSL-EKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKH 702 (869)
Q Consensus 627 L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~ 702 (869)
+++|++|++++|......|.. +++|+.|++.+|... +.+|..+..+++|+.|++++| .+....+..+..+
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n------~l~~~~~~~~~~l 493 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC------QLEQLSPTAFNSL 493 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS------CCCEECTTTTTTC
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC------ccccCChhhhhcc
Confidence 666666666666554444443 456666666665433 356666666666666666653 2222333333444
Q ss_pred ccccccCCceeee
Q 040255 703 SLYEERGIKKSMY 715 (869)
Q Consensus 703 ~~l~~~~~~~~~~ 715 (869)
..++.+++..|.+
T Consensus 494 ~~L~~L~l~~n~l 506 (570)
T 2z63_A 494 SSLQVLNMASNQL 506 (570)
T ss_dssp TTCCEEECCSSCC
T ss_pred cCCCEEeCCCCcC
Confidence 5555555555544
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=3.4e-15 Score=155.27 Aligned_cols=184 Identities=16% Similarity=0.211 Sum_probs=109.2
Q ss_pred cceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCC-CCcc----ccccccceeeecCC-CcccccccccccCCCccCC
Q 040255 486 KLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCP-LKTL----NICAEKLVSLKMPC-TKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 486 ~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~-l~~l----~~~~~~L~~L~L~~-n~l~~l~~~~~~lp~~~~~ 558 (869)
+|+.|++++|....+++ .+..++ +|++|++++|. ++.+ +..+.+|++|++++ |+++.+. +..+.+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~------~~~f~~ 103 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLP--NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID------PDALKE 103 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCT--TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC------TTSEEC
T ss_pred cccEEEEeCCcceEECHHHccCCC--CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC------HHHhCC
Confidence 67777777766666655 344444 67777777765 5555 23456666666665 6665321 224556
Q ss_pred CCCccEEEecCCCCCcccCcc--ccccc---hhccccc-ccccCCC-CcCCccccc-eecccccccccccCccccCCCCC
Q 040255 559 FKTPITFEIIDCKMLERLPDE--LENLE---YLTVKGT-TIRELPE-SLGRLSWVK-RLILSNNSNLERIPESIRHLSKL 630 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~--l~~L~---~L~L~~n-~i~~lP~-~i~~l~~L~-~L~Ls~n~~l~~lP~~i~~L~~L 630 (869)
+++|++|++++|. +..+|.. +++|+ +|++++| .++.+|. .+..+++|+ .|++++| .+..+|......++|
T Consensus 104 l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL 181 (239)
T ss_dssp CTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred CCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence 6667777777665 5556653 44554 6667666 6666654 366666676 7777666 566666654444666
Q ss_pred CEEecCCCCCCcccCCC----C-cccceeecccCCCCccccCCCCCCccceEEeccC
Q 040255 631 TFLFISHCERLQTLPEL----P-CNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 631 ~~L~L~~c~~l~~lp~~----~-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
+.|+|++|..+..+|.. + ++|+.|++++ +.+..+|.. .+.+|+.|++++
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTT
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh--HhccCceeeccC
Confidence 67777665445555532 3 5666666666 345556553 445555555554
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=3e-15 Score=155.66 Aligned_cols=189 Identities=20% Similarity=0.178 Sum_probs=152.6
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCC-CccccC-cCCCCCCCCeeEEecCC-CCCCcc----cccccc
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDK-NKCMVS-HLEGVPFAEVRHLEWPQ-CPLKTL----NICAEK 531 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~-~~~~~~-~l~~l~~~~L~~L~l~~-~~l~~l----~~~~~~ 531 (869)
.++.+.+..++. ..+.+..|.++++|+.|++++|. ...+++ .+..++ +|++|++++ |.++.+ +..+.+
T Consensus 32 ~l~~L~l~~n~l---~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~--~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHL---RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS--KVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCC---SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT--TCCEEEEEEETTCCEECTTSEECCTT
T ss_pred cccEEEEeCCcc---eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc--CCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 455555544443 35677789999999999999986 667776 566666 999999998 898887 346889
Q ss_pred ceeeecCCCcccccccccccCCCccCCCCCcc---EEEecCCCCCcccCcc----ccccc-hhcccccccccCCCCcCCc
Q 040255 532 LVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPI---TFEIIDCKMLERLPDE----LENLE-YLTVKGTTIRELPESLGRL 603 (869)
Q Consensus 532 L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~---~L~L~~~~~l~~lp~~----l~~L~-~L~L~~n~i~~lP~~i~~l 603 (869)
|+.|++++|.++. +|. +..+++|+ +|++++|..+..+|.. +++|+ +|++++|.++.+|......
T Consensus 107 L~~L~l~~n~l~~-------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 107 LKFLGIFNTGLKM-------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp CCEEEEEEECCCS-------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred CCEEeCCCCCCcc-------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 9999999999874 454 66777777 9999999558888875 78899 9999999999999887777
Q ss_pred cccceecccccccccccCcc-ccCC-CCCCEEecCCCCCCcccCCC-CcccceeecccCCC
Q 040255 604 SWVKRLILSNNSNLERIPES-IRHL-SKLTFLFISHCERLQTLPEL-PCNLGLLSARNCTS 661 (869)
Q Consensus 604 ~~L~~L~Ls~n~~l~~lP~~-i~~L-~~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c~~ 661 (869)
++|+.|+|++|..+..+|.. +..+ ++|+.|++++| .+..+|.. +++|+.|++.++..
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 99999999999548888754 7889 99999999985 56678765 88999999988754
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=9.4e-15 Score=174.15 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=65.5
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
.++.+.|..+. ...+.+.+|.++++|++|++++|....++++ +..++ +|++|++++|.++.+ +..+.+|+
T Consensus 53 ~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~--~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS--HLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT--TCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCC--CCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 34444443333 3456777788888888888888776666653 55565 888888888887776 34577888
Q ss_pred eeecCCCcccccccccccCCCccCCCCCccEEEecCCC
Q 040255 534 SLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCK 571 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~ 571 (869)
+|+|++|+++.+.. ..++++++|++|+|++|.
T Consensus 128 ~L~Ls~N~l~~l~~------~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 128 KLVAVETNLASLEN------FPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp EEECTTSCCCCSTT------CCCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCCCh------hhhhcCcccCeeccccCc
Confidence 88888887764422 134455555555555554
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=1.2e-14 Score=175.23 Aligned_cols=199 Identities=15% Similarity=0.179 Sum_probs=108.7
Q ss_pred eecccccccCCcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCccccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~ 549 (869)
.+.+.+|+++++|++|++++|....+|.. +..++ +|++|++++|.+..+ +..+.+|++|++++|.++.
T Consensus 63 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----- 135 (680)
T 1ziw_A 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT--NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS----- 135 (680)
T ss_dssp CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-----
T ss_pred ccCHHHHhcccCcCEEECCCCccCccChhhhccCC--CCCEEECCCCccCccChhHccccCCCCEEECCCCcccc-----
Confidence 34556666677777777766655555553 55554 677777777766555 3346667777777776652
Q ss_pred ccCCCccCCCCCccEEEecCCCCCcccCcc------ccccchhcccccccccC-CCCcCCc-------------------
Q 040255 550 QRLPSSLCTFKTPITFEIIDCKMLERLPDE------LENLEYLTVKGTTIREL-PESLGRL------------------- 603 (869)
Q Consensus 550 ~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~------l~~L~~L~L~~n~i~~l-P~~i~~l------------------- 603 (869)
..|..+.++++|++|+|++|. +..++.. +++|++|++++|.++.+ |..++.+
T Consensus 136 -~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 213 (680)
T 1ziw_A 136 -TKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213 (680)
T ss_dssp -CCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred -cCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH
Confidence 234456667777777777766 4444432 35677777777766644 3333322
Q ss_pred --------cccceecccccccccccCccccCCCC--CCEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCC
Q 040255 604 --------SWVKRLILSNNSNLERIPESIRHLSK--LTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLS 670 (869)
Q Consensus 604 --------~~L~~L~Ls~n~~l~~lP~~i~~L~~--L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~ 670 (869)
++|+.|++++|...+..|..+..++. |+.|+|++|...+..|.. +++|+.|++.+|...+..|..+.
T Consensus 214 ~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (680)
T 1ziw_A 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293 (680)
T ss_dssp HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT
T ss_pred HHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc
Confidence 33444445554222222334444433 666666654433322322 34556666665543333444555
Q ss_pred CCccceEEeccC
Q 040255 671 SMSSVLYVNLCN 682 (869)
Q Consensus 671 ~l~~L~~l~l~~ 682 (869)
++++|+.+++++
T Consensus 294 ~l~~L~~L~L~~ 305 (680)
T 1ziw_A 294 GLFNVRYLNLKR 305 (680)
T ss_dssp TCTTCCEEECTT
T ss_pred CCCCccEEeccc
Confidence 555666665544
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=1e-14 Score=166.67 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=137.2
Q ss_pred ccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 480 AFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
.|..+++|++|++++|....+| +..++ +|++|++++|.+..+ ...+.+|++|++++|+++.+ | +++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~--~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l-------~--~~~ 125 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNT--NLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKL-------D--VSQ 125 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCT--TCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCC-------C--CTT
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCC--CCCEEECcCCCCceeecCCCCcCCEEECCCCcCCee-------c--CCC
Confidence 5788888888888887665554 55554 888888888888777 66678888888888887632 2 677
Q ss_pred CCCccEEEecCCCCCcccCcc-ccccchhccccc-ccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecC
Q 040255 559 FKTPITFEIIDCKMLERLPDE-LENLEYLTVKGT-TIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFIS 636 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n-~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~ 636 (869)
+++|++|++++|. +..+|-. +++|++|++++| .+..+ .++.+++|+.|++++| .+..+| ++.+++|+.|+++
T Consensus 126 l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 126 NPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCD 199 (457)
T ss_dssp CTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECC
T ss_pred CCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--cccCCCCCEEECc
Confidence 8888888888887 6666644 788888888888 44455 4778888888888888 788887 7888888888888
Q ss_pred CCCCCcccCC-CCcccceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 637 HCERLQTLPE-LPCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 637 ~c~~l~~lp~-~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
+|+ +..++- .+++|+.|++++| .+..+| +..+++|+.+++++|.
T Consensus 200 ~N~-l~~~~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 200 TNN-ITKLDLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp SSC-CSCCCCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred CCc-CCeeccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc
Confidence 865 444442 2578888888885 556676 7788889999888753
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=9.9e-15 Score=155.23 Aligned_cols=200 Identities=16% Similarity=0.194 Sum_probs=151.1
Q ss_pred CCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCC
Q 040255 496 KNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCK 571 (869)
Q Consensus 496 ~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~ 571 (869)
....+|..+ + ++|+.|++++|.++.+ ...+.+|++|++++|.++.+ .+..+.++++|++|+|++|.
T Consensus 18 ~l~~ip~~l---~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 18 NFYKIPDNL---P-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------EDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp CCSSCCSSS---C-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------CTTTTTTCTTCCEEECTTCC
T ss_pred CccccCCCC---C-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------CHHHccCCcCCCEEECCCCc
Confidence 334455543 3 5899999999999877 45688999999999998743 23468889999999999998
Q ss_pred CCcccCcc----ccccchhcccccccccCCC-CcCCccccceecccccccccc--cCccccCCCCCCEEecCCCCCCccc
Q 040255 572 MLERLPDE----LENLEYLTVKGTTIRELPE-SLGRLSWVKRLILSNNSNLER--IPESIRHLSKLTFLFISHCERLQTL 644 (869)
Q Consensus 572 ~l~~lp~~----l~~L~~L~L~~n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~--lP~~i~~L~~L~~L~L~~c~~l~~l 644 (869)
+..+|.. +++|++|++++|.++.++. .++.+++|++|+|++| .+.. +|..++.+++|+.|+|++|. +..+
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~ 164 (276)
T 2z62_A 88 -IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 164 (276)
T ss_dssp -CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred -cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcC
Confidence 6666643 8899999999999998865 7999999999999999 7776 78899999999999999965 4445
Q ss_pred C-CC---Ccccc----eeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCceeee
Q 040255 645 P-EL---PCNLG----LLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSMY 715 (869)
Q Consensus 645 p-~~---~~~L~----~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 715 (869)
| .. +.+|+ .|+++++ .+..+|.......+|+.|++++|. +..+.+..+..+..++.+++..|.+
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ------LKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC------CSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc------eeecCHhHhcccccccEEEccCCcc
Confidence 4 33 34455 7888874 577777766566689999998843 3222223334455666666665555
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.59 E-value=1.2e-14 Score=166.23 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=154.7
Q ss_pred ceeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-ccccccceeee
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-NICAEKLVSLK 536 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~ 536 (869)
..++.+.+..+... .+ .++.+++|++|++++|....++ +..++ +|++|++++|.+..+ ...+.+|++|+
T Consensus 64 ~~L~~L~Ls~n~l~---~~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~--~L~~L~L~~N~l~~l~~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNIT---TL---DLSQNTNLTYLACDSNKLTNLD--VTPLT--KLTYLNCDTNKLTKLDVSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCS---CC---CCTTCTTCSEEECCSSCCSCCC--CTTCT--TCCEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCC---eE---ccccCCCCCEEECcCCCCceee--cCCCC--cCCEEECCCCcCCeecCCCCCcCCEEE
Confidence 34455555444443 12 3889999999999998766654 66665 999999999999888 67789999999
Q ss_pred cCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc-ccccchhcccccccccCCCCcCCccccceecccccc
Q 040255 537 MPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNS 615 (869)
Q Consensus 537 L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~ 615 (869)
+++|+++.+ .++++++|+.|++++|..++.++-. +++|++|++++|.++.+| ++.+++|+.|++++|
T Consensus 134 l~~N~l~~l---------~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N- 201 (457)
T 3bz5_A 134 CARNTLTEI---------DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN- 201 (457)
T ss_dssp CTTSCCSCC---------CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSS-
T ss_pred CCCCcccee---------ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCC-
Confidence 999998743 2778899999999999878888655 899999999999999988 889999999999999
Q ss_pred cccccCccccCCCCCCEEecCCCCCCcccCCC-CcccceeecccCCCCccccCCCCCCccceEEeccC
Q 040255 616 NLERIPESIRHLSKLTFLFISHCERLQTLPEL-PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 616 ~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~ 682 (869)
.+..++ ++.+++|+.|++++|+ +..+|-. +++|+.|++++| .+..+| ++.+++|+.++++.
T Consensus 202 ~l~~~~--l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N-~l~~~~--~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 202 NITKLD--LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CCSCCC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECTT
T ss_pred cCCeec--cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCC-cCCCcC--HHHCCCCCEEeccC
Confidence 788884 8899999999999865 4557732 678999999986 455565 34555565555443
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=163.10 Aligned_cols=190 Identities=17% Similarity=0.132 Sum_probs=146.9
Q ss_pred cCCcceEEEEcCCCCc-cccCcC--CCCCCCCeeEEecCCCCCCcc--------ccccccceeeecCCCccccccccccc
Q 040255 483 KMPKLRFLRFYGDKNK-CMVSHL--EGVPFAEVRHLEWPQCPLKTL--------NICAEKLVSLKMPCTKVEQLWDDVQR 551 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~~~-~~~~~l--~~l~~~~L~~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~l~~~~~~ 551 (869)
.+++|+.|++++|... ..|..+ ..++ +|+.|++++|.+... ...+++|++|+|++|.+.. .
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~------~ 160 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGL--ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA------F 160 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCB--CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC------C
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCC--CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch------h
Confidence 4577999999987654 344444 4454 999999999998762 3458899999999999863 3
Q ss_pred CCCccCCCCCccEEEecCCCCCcc--cC-----ccccccchhcccccccccCCCC----cCCccccceeccccccccccc
Q 040255 552 LPSSLCTFKTPITFEIIDCKMLER--LP-----DELENLEYLTVKGTTIRELPES----LGRLSWVKRLILSNNSNLERI 620 (869)
Q Consensus 552 lp~~~~~l~~L~~L~L~~~~~l~~--lp-----~~l~~L~~L~L~~n~i~~lP~~----i~~l~~L~~L~Ls~n~~l~~l 620 (869)
.|..+.++++|++|+|++|...+. +| ..+++|++|+|++|.++.+|.. ++.+++|++|+|++| .+..+
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~ 239 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRAT 239 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCC
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCcc
Confidence 445788899999999999984432 22 2278999999999999877653 467899999999999 66665
Q ss_pred -CccccCC---CCCCEEecCCCCCCcccCCC-CcccceeecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 621 -PESIRHL---SKLTFLFISHCERLQTLPEL-PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 621 -P~~i~~L---~~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
|..+..+ ++|++|+|++|. +..+|.. +++|+.|++++| .+..+|. +..+++|+.|++++|+
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred chhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 8777777 699999999855 5588875 578999999885 5666665 6778889999988854
No 81
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.58 E-value=9.8e-15 Score=175.92 Aligned_cols=214 Identities=17% Similarity=0.168 Sum_probs=158.8
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCcccc-CcCCCCCCCCeeEEecCCCCCCcc----ccccccce
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMV-SHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLV 533 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~-~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~ 533 (869)
.++.+.+..+.. ..+.+..|.++++|++|++++|....++ ..+..++ +|++|++++|.+..+ +..+.+|+
T Consensus 26 ~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 26 NITVLNLTHNQL---RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP--MLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TCSEEECCSSCC---CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCT--TCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCcEEECCCCCC---CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhccc--CcCEEECCCCccCccChhhhccCCCCC
Confidence 455555554443 3567778999999999999987665554 3455665 999999999998887 44688999
Q ss_pred eeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCC-c--CCccccc
Q 040255 534 SLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPES-L--GRLSWVK 607 (869)
Q Consensus 534 ~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~-i--~~l~~L~ 607 (869)
+|++++|+++.+ .|..++++++|++|+|++|...+..|.. +++|++|++++|.++.++.. + ..+++|+
T Consensus 101 ~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 101 ELHLMSNSIQKI------KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp EEECCSSCCCCC------CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred EEECCCCccCcc------ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 999999988632 3357889999999999999844444443 88999999999999977653 3 3568999
Q ss_pred eecccccccccccC-ccccCC---------------------------CCCCEEecCCCCCCcccCCCC-----ccccee
Q 040255 608 RLILSNNSNLERIP-ESIRHL---------------------------SKLTFLFISHCERLQTLPELP-----CNLGLL 654 (869)
Q Consensus 608 ~L~Ls~n~~l~~lP-~~i~~L---------------------------~~L~~L~L~~c~~l~~lp~~~-----~~L~~L 654 (869)
.|++++| .+..++ ..+..+ ++|+.|++++|...+..|..+ ++|+.|
T Consensus 175 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred EEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 9999999 665554 334443 567777788766555555543 349999
Q ss_pred ecccCCCCccccCCCCCCccceEEeccCCC
Q 040255 655 SARNCTSLEKLPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 655 ~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~ 684 (869)
++++|......|..+.++++|+.+++++|.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 999975444445678999999999998753
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=175.39 Aligned_cols=222 Identities=14% Similarity=0.112 Sum_probs=136.9
Q ss_pred ccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCc
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSS 555 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~ 555 (869)
+..+..+ +|+.|++++|....+|.. .+ ++|+.|++.+|.+... ...+++|+.|++++|.++.. ...|..
T Consensus 298 ~~~~~~~-~L~~L~l~~n~~~~l~~~--~l--~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~ 368 (570)
T 2z63_A 298 KDFSYNF-GWQHLELVNCKFGQFPTL--KL--KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK----GCCSQS 368 (570)
T ss_dssp CBCCSCC-CCSEEEEESCBCSSCCBC--BC--SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE----EEEEHH
T ss_pred hhhhccC-CccEEeeccCcccccCcc--cc--cccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc----cccccc
Confidence 3445666 888888877766655542 23 3777777777775554 35567777777777776632 122445
Q ss_pred cCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCC--CCcCCccccceecccccccccccCccccCCCCC
Q 040255 556 LCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELP--ESLGRLSWVKRLILSNNSNLERIPESIRHLSKL 630 (869)
Q Consensus 556 ~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP--~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L 630 (869)
+.++++|++|++++|. +..+|.. +++|++|++++|.+..++ ..+..+++|++|+|++|...+..|..+..+++|
T Consensus 369 ~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp HHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred ccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 5666777777777776 5555543 667777777777776543 356677777777777773333455566777777
Q ss_pred CEEecCCCCCC-cccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhcccccccccc
Q 040255 631 TFLFISHCERL-QTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYE 706 (869)
Q Consensus 631 ~~L~L~~c~~l-~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 706 (869)
+.|++++|... +.+|.. +++|+.|++++|...+..|..+.++++|+.|++++|. +....+..+..+..++
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ------LKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------CSCCCTTTTTTCTTCC
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc------CCCCCHHHhhcccCCc
Confidence 77777776544 356644 4567777777764444446667777777777776632 2222233334445555
Q ss_pred ccCCceeee
Q 040255 707 ERGIKKSMY 715 (869)
Q Consensus 707 ~~~~~~~~~ 715 (869)
.+++..|.+
T Consensus 522 ~L~l~~N~~ 530 (570)
T 2z63_A 522 KIWLHTNPW 530 (570)
T ss_dssp EEECCSSCB
T ss_pred EEEecCCcc
Confidence 555555544
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=9.4e-15 Score=158.11 Aligned_cols=187 Identities=18% Similarity=0.282 Sum_probs=152.7
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeee
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLK 536 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~ 536 (869)
.++.+.+..+... .+ ..+..+++|+.|++++|....++. +..++ +|++|++++|.++.+ ...+.+|+.|+
T Consensus 42 ~L~~L~l~~~~i~---~l--~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~--~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 42 GITTLSAFGTGVT---TI--EGVQYLNNLIGLELKDNQITDLAP-LKNLT--KITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp TCCEEECTTSCCC---CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCC--SCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred CcCEEEeeCCCcc---Cc--hhhhccCCCCEEEccCCcCCCChh-HccCC--CCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 3444444444332 22 258899999999999988777777 77776 999999999999988 66789999999
Q ss_pred cCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceeccccc
Q 040255 537 MPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNN 614 (869)
Q Consensus 537 L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n 614 (869)
+++|.++.+ | .+..+++|+.|+|++|. +..+|.. +++|++|+|++|.++.+|. +..+++|+.|+|++|
T Consensus 114 l~~n~l~~~-------~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 114 LTSTQITDV-------T-PLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CTTSCCCCC-------G-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCCCCCc-------h-hhcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC
Confidence 999998743 3 37889999999999997 7777765 8999999999999999887 999999999999999
Q ss_pred ccccccCccccCCCCCCEEecCCCCCCcccCCC--CcccceeecccCCCCccccC
Q 040255 615 SNLERIPESIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNCTSLEKLPA 667 (869)
Q Consensus 615 ~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~ 667 (869)
.+..+|. +..+++|++|+|++|. +..+|.. +++|+.|++.+|. +...|.
T Consensus 184 -~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 184 -KISDISP-LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp -CCCCCGG-GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred -ccCcChh-hcCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe-eecCCe
Confidence 8888886 8999999999999965 4555543 6789999998864 455554
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=2.7e-14 Score=163.03 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=139.7
Q ss_pred CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecCCCcccccccccccCCCccCCCCCccE
Q 040255 485 PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPIT 564 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~ 564 (869)
++|++|++++|....+| .+..++ +|++|++++|.++.+...+.+|++|++++|+++. +| .++++++|+.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~--~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-------l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSS--FLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-------LP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-------CC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCCCc-ccCCCC--CCCEEECCCCcCcccCCCcccccEEECcCCcCCc-------Cc-cccCCCCCCE
Confidence 68888888887776676 566665 8999999999888774445689999999888763 45 5888999999
Q ss_pred EEecCCCCCcccCccccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCccc
Q 040255 565 FEIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTL 644 (869)
Q Consensus 565 L~L~~~~~l~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~l 644 (869)
|++++|. +..+|....+|++|++++|.++.+|. ++.+++|++|++++| .+..+|.. +++|+.|++++|. +..+
T Consensus 200 L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~N~-l~~l 272 (454)
T 1jl5_A 200 IYADNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDNY-LTDL 272 (454)
T ss_dssp EECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCSSC-CSCC
T ss_pred EECCCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCC-cCCccccc---ccccCEEECCCCc-cccc
Confidence 9999998 77788878899999999999999984 899999999999999 88888863 4789999999854 5668
Q ss_pred CCCCcccceeecccCCCCccccCCCCCCccceEEeccCC
Q 040255 645 PELPCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 645 p~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~ 683 (869)
|..+++|+.|++++|. +..+|... ++|+.|++++|
T Consensus 273 ~~~~~~L~~L~ls~N~-l~~l~~~~---~~L~~L~l~~N 307 (454)
T 1jl5_A 273 PELPQSLTFLDVSENI-FSGLSELP---PNLYYLNASSN 307 (454)
T ss_dssp CCCCTTCCEEECCSSC-CSEESCCC---TTCCEEECCSS
T ss_pred CcccCcCCEEECcCCc-cCcccCcC---CcCCEEECcCC
Confidence 8888889999998863 55444321 34555665553
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=2.1e-14 Score=153.98 Aligned_cols=164 Identities=21% Similarity=0.271 Sum_probs=135.1
Q ss_pred CcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCCCC
Q 040255 485 PKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKT 561 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~ 561 (869)
++|+.|++++|....++. .+..++ +|++|++++|.+..+ ...+.+|+.|++++|+++ .+|..+.++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~ 101 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYT--RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-------SLPLLGQTLPA 101 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCT--TCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-------SCCCCTTTCTT
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCC--CCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-------cCchhhccCCC
Confidence 688999999887766653 566665 999999999998888 567889999999999886 46667888999
Q ss_pred ccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCccccceecccccccccccCcc-ccCCCCCCEEec
Q 040255 562 PITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFI 635 (869)
Q Consensus 562 L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L 635 (869)
|++|+|++|. +..+|.. +++|++|+|++|.++.+|.. +..+++|+.|+|++| .+..+|.. +..+++|+.|+|
T Consensus 102 L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 102 LTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp CCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEEC
Confidence 9999999997 7777754 88999999999999988765 578999999999999 88899876 578999999999
Q ss_pred CCCCCCcccCCC---CcccceeecccCC
Q 040255 636 SHCERLQTLPEL---PCNLGLLSARNCT 660 (869)
Q Consensus 636 ~~c~~l~~lp~~---~~~L~~L~l~~c~ 660 (869)
++| .+..+|.. ..+|+.|++.+++
T Consensus 180 ~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 180 QEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCC-cCCccChhhcccccCCeEEeCCCC
Confidence 984 56788876 3567888887753
No 86
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.56 E-value=4.1e-15 Score=174.41 Aligned_cols=165 Identities=17% Similarity=0.205 Sum_probs=115.7
Q ss_pred CCCcc-CCCCCccEEEecCCCCCcccCc------cccccchhcccccccccCC---CCcCCccccceecccccccccccC
Q 040255 552 LPSSL-CTFKTPITFEIIDCKMLERLPD------ELENLEYLTVKGTTIRELP---ESLGRLSWVKRLILSNNSNLERIP 621 (869)
Q Consensus 552 lp~~~-~~l~~L~~L~L~~~~~l~~lp~------~l~~L~~L~L~~n~i~~lP---~~i~~l~~L~~L~Ls~n~~l~~lP 621 (869)
+|..+ .++++|++|+|++|...+.+|. .+++|++|+|++|.++.+| ..++.+++|++|+|++| .+..+|
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp 403 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMP 403 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCC
Confidence 34343 3688899999999885555542 1788999999999888775 34788889999999998 888898
Q ss_pred ccccCCCCCCEEecCCCCCCcccCCC-CcccceeecccCCCCccccCCCCCCccceEEeccCCCCCCchhhhhhhhcccc
Q 040255 622 ESIRHLSKLTFLFISHCERLQTLPEL-PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWM 700 (869)
Q Consensus 622 ~~i~~L~~L~~L~L~~c~~l~~lp~~-~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 700 (869)
..++.+++|++|++++|. +..+|.. +++|+.|++++| .+..++ .++++|+.|++++|.-. . ++. +.
T Consensus 404 ~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N-~l~~~~---~~l~~L~~L~Ls~N~l~------~-ip~-~~ 470 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDSFS---LFLPRLQELYISRNKLK------T-LPD-AS 470 (549)
T ss_dssp SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS------S-CCC-GG
T ss_pred hhhcccccccEEECCCCC-cccccchhcCCceEEECCCC-Chhhhc---ccCChhcEEECCCCccC------c-CCC-cc
Confidence 888888999999999865 5666654 568888888886 444443 46778888888875322 1 111 22
Q ss_pred ccccccccCCceeeecCCCCCCcccccCCCCC
Q 040255 701 KHSLYEERGIKKSMYFPGNEIPKWFRHQSMGS 732 (869)
Q Consensus 701 ~~~~l~~~~~~~~~~~pg~~iP~w~~~~~~g~ 732 (869)
....++.++++.|.+ .+.+|.+|..-..-.
T Consensus 471 ~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 471 LFPVLLVMKISRNQL--KSVPDGIFDRLTSLQ 500 (549)
T ss_dssp GCTTCCEEECCSSCC--CCCCTTGGGGCTTCC
T ss_pred cCccCCEEecCCCcc--CCcCHHHHhcCcccC
Confidence 355667777777766 455566676554333
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.3e-14 Score=151.96 Aligned_cols=165 Identities=24% Similarity=0.321 Sum_probs=134.6
Q ss_pred CcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 485 PKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
++|+.|++++|....++. .+..++ +|++|++++|.+..+ +..+.+|++|++++|.++.+. +..+.++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLT--KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP------IGVFDQL 108 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCT--TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC------TTTTTTC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCC--CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC------HhHcccc
Confidence 579999999987777765 566665 999999999998887 245889999999999887432 2356788
Q ss_pred CCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCccccceecccccccccccCcc-ccCCCCCCEE
Q 040255 560 KTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFL 633 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 633 (869)
++|++|+|++|. +..+|.. +++|++|+|++|.++.+|.. ++.+++|+.|+|++| .+..+|.. +..+++|++|
T Consensus 109 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 109 VNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp SSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEE
Confidence 999999999998 6667653 88999999999999988765 788999999999999 78888765 8899999999
Q ss_pred ecCCCCCCcccCCC----CcccceeecccCC
Q 040255 634 FISHCERLQTLPEL----PCNLGLLSARNCT 660 (869)
Q Consensus 634 ~L~~c~~l~~lp~~----~~~L~~L~l~~c~ 660 (869)
+|++| .+..+|.. +++|+.|++.+++
T Consensus 187 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 187 KLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 99986 45666653 5678888888764
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=6.4e-14 Score=146.77 Aligned_cols=166 Identities=22% Similarity=0.313 Sum_probs=78.4
Q ss_pred cceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCCCC
Q 040255 486 KLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKT 561 (869)
Q Consensus 486 ~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~ 561 (869)
+.+.++++++....+|.++. .+|+.|++++|.+..+ ...+.+|++|+|++|.++.+ .|..+.++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~ 84 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL------SAGVFDDLTE 84 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTT
T ss_pred CCeEEecCCCCccccCCCCC----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc------CHhHhccCCc
Confidence 34556666555555554432 3556666655555444 22344455555555544421 1223444445
Q ss_pred ccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCccccceecccccccccccCc-cccCCCCCCEEec
Q 040255 562 PITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPE-SIRHLSKLTFLFI 635 (869)
Q Consensus 562 L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L~L 635 (869)
|++|+|++|. +..+|.. +++|++|+|++|.++.+|.. ++.+++|+.|+|++| .+..+|. .++.+++|+.
T Consensus 85 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~--- 159 (251)
T 3m19_A 85 LGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQT--- 159 (251)
T ss_dssp CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE---
T ss_pred CCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCE---
Confidence 5555555444 3333322 44444444444444444332 244444444444444 4444443 2444444444
Q ss_pred CCCCCCcccCCCCcccceeecccCCCCccccC-CCCCCccceEEeccCCCC
Q 040255 636 SHCERLQTLPELPCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLK 685 (869)
Q Consensus 636 ~~c~~l~~lp~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~ 685 (869)
|++++| .+..+|. .+.++++|+.+++++|+-
T Consensus 160 ------------------L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 160 ------------------LSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ------------------EECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ------------------EECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 444443 2333333 455666677777766543
No 89
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.53 E-value=1.6e-15 Score=144.47 Aligned_cols=69 Identities=25% Similarity=0.514 Sum_probs=66.6
Q ss_pred CCcEEEccccccccCchhHH-HHHHHccC--CceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccccccc
Q 040255 1 MYDVFLSFRGEDTRDNFTSH-LHHVLSLK--SIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~-l~~~L~~~--gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w 71 (869)
+|||||||+|+|+ +|+.| |+.+|+++ |+++|+|+ ++.+|+.+.++|.+||++|+++|+|+|++|++|.|
T Consensus 5 ~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~w 77 (149)
T 1fyx_A 5 XYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEW 77 (149)
T ss_dssp CEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHT
T ss_pred cceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccch
Confidence 5999999999996 89997 99999987 99999999 99999999999999999999999999999999999
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=2.2e-14 Score=153.79 Aligned_cols=163 Identities=21% Similarity=0.244 Sum_probs=111.1
Q ss_pred cccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 481 FSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
+..+++|+.|+++++....++ ++..++ +|++|++++|.+..+ ...+.+|+.|++++|.++. +| .+..
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~--~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-------~~-~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLP--NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-------LS-SLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCT--TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-------GG-GGTT
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCC--CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-------Ch-hhcc
Confidence 457888999999887665554 355555 788888888887776 4566777777777777663 22 3667
Q ss_pred CCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecC
Q 040255 559 FKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFIS 636 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~ 636 (869)
+++|++|+|++|. +..+|.. +++|++|++++|.++.+ +.++.+++|+.|+|++| .+..+|. +..+++|+.|+|+
T Consensus 111 l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 111 LKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLS 186 (291)
T ss_dssp CTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECC
Confidence 7777777777776 5666544 67777777777777766 46777777777777777 6666665 7777777777777
Q ss_pred CCCCCcccCCC--CcccceeecccC
Q 040255 637 HCERLQTLPEL--PCNLGLLSARNC 659 (869)
Q Consensus 637 ~c~~l~~lp~~--~~~L~~L~l~~c 659 (869)
+| .+..+|.. +++|+.|++.+|
T Consensus 187 ~N-~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 187 KN-HISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp SS-CCCBCGGGTTCTTCSEEEEEEE
T ss_pred CC-cCCCChhhccCCCCCEEECcCC
Confidence 64 34444432 345555555543
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=2.7e-15 Score=164.31 Aligned_cols=233 Identities=14% Similarity=0.141 Sum_probs=171.3
Q ss_pred cccccccC--CcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCc--c---ccccccceeeecCCCccccccccc
Q 040255 477 NSYAFSKM--PKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKT--L---NICAEKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 477 ~~~~f~~l--~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~--l---~~~~~~L~~L~L~~n~l~~l~~~~ 549 (869)
.+..+..+ ++++.|++.+|.....+..+..++ +|++|++++|.+.. + ...+++|++|++++|.++
T Consensus 60 ~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~--~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~------ 131 (336)
T 2ast_B 60 HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF--RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS------ 131 (336)
T ss_dssp CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCB--CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC------
T ss_pred CHHHHHhhhhccceEEEcCCccccccchhhccCC--CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC------
Confidence 35667777 899999999876666666665554 99999999998764 3 556889999999999876
Q ss_pred ccCCCccCCCCCccEEEecCCCCCcc--cCcc---ccccchhccccc-cccc--CCCCcCCcc-ccceecccccc-cc--
Q 040255 550 QRLPSSLCTFKTPITFEIIDCKMLER--LPDE---LENLEYLTVKGT-TIRE--LPESLGRLS-WVKRLILSNNS-NL-- 617 (869)
Q Consensus 550 ~~lp~~~~~l~~L~~L~L~~~~~l~~--lp~~---l~~L~~L~L~~n-~i~~--lP~~i~~l~-~L~~L~Ls~n~-~l-- 617 (869)
...|..+..+++|++|+|++|..+.. +|.. +++|++|++++| .++. +|..++.++ +|++|+|++|. .+
T Consensus 132 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 132 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 23455677899999999999965663 6654 899999999999 8884 688888999 99999999993 22
Q ss_pred cccCccccCCCCCCEEecCCCCCCc-ccCCC---CcccceeecccCCCCccc-cCCCCCCccceEEeccCCCCCCchhhh
Q 040255 618 ERIPESIRHLSKLTFLFISHCERLQ-TLPEL---PCNLGLLSARNCTSLEKL-PAGLSSMSSVLYVNLCNFLKLDPNELS 692 (869)
Q Consensus 618 ~~lP~~i~~L~~L~~L~L~~c~~l~-~lp~~---~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~l~l~~~~~~~~~~l~ 692 (869)
..+|..+..+++|+.|++++|..+. ..+.. +++|+.|++.+|..+..- ...+.++++|+.|++++| .....+.
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~ 289 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQ 289 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHH
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHH
Confidence 6678888999999999999988543 33332 578999999999633211 125678899999999987 2111222
Q ss_pred hhhhccccccccccccCCceeeecCCCCCCcccccC
Q 040255 693 EIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQ 728 (869)
Q Consensus 693 ~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP~w~~~~ 728 (869)
.+. +.++.+.+..+.+ .+..|.++...
T Consensus 290 ~l~-------~~l~~L~l~~n~l--~~~~~~~~~~~ 316 (336)
T 2ast_B 290 LLK-------EALPHLQINCSHF--TTIARPTIGNK 316 (336)
T ss_dssp HHH-------HHSTTSEESCCCS--CCTTCSSCSST
T ss_pred HHH-------hhCcceEEecccC--ccccCCccccc
Confidence 111 2234444555555 56778887654
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=7.3e-15 Score=159.34 Aligned_cols=191 Identities=19% Similarity=0.181 Sum_probs=144.3
Q ss_pred ceeeccccccccccceeeeccccc--ccCCcceEEEEcCCCCccccCcCCCC---CCCCeeEEecCCCCCCcc----ccc
Q 040255 458 EAIEGISLDMNKVNREIHMNSYAF--SKMPKLRFLRFYGDKNKCMVSHLEGV---PFAEVRHLEWPQCPLKTL----NIC 528 (869)
Q Consensus 458 ~~v~~i~l~~~~~~~~~~~~~~~f--~~l~~Lr~L~l~~~~~~~~~~~l~~l---~~~~L~~L~l~~~~l~~l----~~~ 528 (869)
..++.+.+..+... ...+..+ ..+++|+.|++++|.....|..+..+ ..++|++|++++|.+..+ ...
T Consensus 95 ~~L~~L~L~~n~l~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 95 SGLQELTLENLEVT---GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp SCCCEEEEEEEBCB---SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CCccEEEccCCccc---chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 35555555544432 2234433 89999999999998777666555444 114999999999998887 457
Q ss_pred cccceeeecCCCcccccccccccCCCcc--CCCCCccEEEecCCCCCcccCc---c----ccccchhcccccccccCC--
Q 040255 529 AEKLVSLKMPCTKVEQLWDDVQRLPSSL--CTFKTPITFEIIDCKMLERLPD---E----LENLEYLTVKGTTIRELP-- 597 (869)
Q Consensus 529 ~~~L~~L~L~~n~l~~l~~~~~~lp~~~--~~l~~L~~L~L~~~~~l~~lp~---~----l~~L~~L~L~~n~i~~lP-- 597 (869)
+.+|++|++++|++... ..+|..+ .++++|++|+|++|. +..+|. . +++|++|+|++|.++..+
T Consensus 172 l~~L~~L~Ls~N~l~~~----~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGE----RGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp CSSCCEEECCSCTTCHH----HHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred CCCCCEEECCCCCcCcc----hHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 89999999999997521 1123333 789999999999998 664443 2 589999999999999754
Q ss_pred CCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC--CcccceeecccCC
Q 040255 598 ESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNCT 660 (869)
Q Consensus 598 ~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~ 660 (869)
..+..+++|++|+|++| .+..+|..+. ++|+.|+|++| .+..+|.. +++|+.|++.+++
T Consensus 247 ~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred hhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 45677899999999999 8889999887 89999999985 55666763 5678888888753
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.52 E-value=5.5e-13 Score=146.63 Aligned_cols=256 Identities=12% Similarity=0.054 Sum_probs=154.3
Q ss_pred ccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhh---ccCCHHH
Q 040255 146 FQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAE---ETGGIKD 222 (869)
Q Consensus 146 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s---~~~~~~~ 222 (869)
++..++.++||++++++|.+++..+ +++.|+|++|+|||||+++++++.. .+|+.. .... .......
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDC-RELYAERGHITREE 76 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEH-HHHHHTTTCBCHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEe-ecccccccCCCHHH
Confidence 4455678999999999999998743 6899999999999999999998752 556652 2111 0113344
Q ss_pred HHHHHHHHhhc----------------CCC---CCCHHH----HHHHHcc-CceEEEecCCC------------------
Q 040255 223 LQKKLLSELSK----------------DGN---MRNIES----QLNRLAR-KKVRIVFDDVT------------------ 260 (869)
Q Consensus 223 l~~~il~~l~~----------------~~~---~~~~~~----l~~~L~~-kr~LlVLDDv~------------------ 260 (869)
+...+...+.. ... ...... +.+.... ++++|||||++
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 44444433321 011 112232 3333332 49999999984
Q ss_pred ------CCcEEEEEeCchhhhhh-----------cC-CCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHH
Q 040255 261 ------SGSRVIITTRDKQVLKN-----------CW-ANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKY 322 (869)
Q Consensus 261 ------~gsrIivTTR~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~ 322 (869)
++.++|+|++...+... .+ ....+++.+|+.+|+.+++....-..... -..+.+..+++.
T Consensus 157 ~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~ 234 (350)
T 2qen_A 157 YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVEL 234 (350)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Confidence 35688999987653221 11 12478999999999999997654221111 123567899999
Q ss_pred cCCCchhHHHHHhhhcC-CCHHHHHHHHHHHhcCCCchhhhHHHhhhccC---cHHHHHHHhhcccccCCCCHHHHHHH-
Q 040255 323 AQGVPLALKVLGCYLCG-RSKEVWESAMRKLEIIPHVEIEEVLKISYDSL---DDSQKNVFLDIACFLEGEHRDEVISI- 397 (869)
Q Consensus 323 ~~GlPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L---~~~~k~~fl~~a~F~~~~~~~~l~~~- 397 (869)
++|+|+++..++..+.. .+...+. ..+. ..+...+.-.+..+ ++..+.++..+|+ . ......+...
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l~~~~ 305 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLIRDYL 305 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHHHHHH
Confidence 99999999999876432 2222221 1111 01111122222233 6788889888887 2 2233333322
Q ss_pred ---------------Hhh--cCcceEeccCCeEEe-cHHHHHHh
Q 040255 398 ---------------FDA--SKSLINLDLFYRIRM-HDLLRDMG 423 (869)
Q Consensus 398 ---------------~~~--~~sLi~~~~~~~~~m-Hdll~~~~ 423 (869)
+.. +.+||... .+.|.+ |.+++++.
T Consensus 306 ~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 306 AVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVL 348 (350)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHH
Confidence 222 67777765 466765 56776654
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.2e-13 Score=144.79 Aligned_cols=145 Identities=19% Similarity=0.326 Sum_probs=87.1
Q ss_pred CccEEEecCCCCCcccCcc----ccccchhcccccccccCC-CCcCCccccceecccccccccccCcc-ccCCCCCCEEe
Q 040255 561 TPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELP-ESLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLF 634 (869)
Q Consensus 561 ~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP-~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~ 634 (869)
+|+.|+|++|. +..++.. +++|++|+|++|.++.+| ..+..+++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 36 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEE
Confidence 55666666655 3333332 556666666666666443 33566666666666666 55555533 46666666666
Q ss_pred cCCCCCCcccCCC----CcccceeecccCCCCccccC-CCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccC
Q 040255 635 ISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERG 709 (869)
Q Consensus 635 L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 709 (869)
|++| .+..+|.. +++|+.|++++| .+..+|. .+.++++|+.|++++|. +..+.+..+..+..++.++
T Consensus 114 L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 114 LGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQ------LQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC------CSCCCTTTTTTCTTCCEEE
T ss_pred cCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCc------CCccCHHHHhCCCCCCEEE
Confidence 6664 33444432 456666666664 4556665 67888999999998853 3333334455566777777
Q ss_pred Cceeee
Q 040255 710 IKKSMY 715 (869)
Q Consensus 710 ~~~~~~ 715 (869)
+..|.+
T Consensus 186 l~~N~~ 191 (251)
T 3m19_A 186 LFGNQF 191 (251)
T ss_dssp CCSCCB
T ss_pred eeCCce
Confidence 776666
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=156.15 Aligned_cols=189 Identities=16% Similarity=0.069 Sum_probs=143.8
Q ss_pred eeeccccccccccceeeeccccc--ccCCcceEEEEcCCCCccccC-----cCCCCCCCCeeEEecCCCCCCcc----cc
Q 040255 459 AIEGISLDMNKVNREIHMNSYAF--SKMPKLRFLRFYGDKNKCMVS-----HLEGVPFAEVRHLEWPQCPLKTL----NI 527 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f--~~l~~Lr~L~l~~~~~~~~~~-----~l~~l~~~~L~~L~l~~~~l~~l----~~ 527 (869)
.++.+.+..+... ...+..+ .++++|+.|++++|....... .+..+ ++|++|++++|.+..+ ..
T Consensus 92 ~L~~L~l~~n~l~---~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKIT---GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK--PGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCB---SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC--SCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCCEec---cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc--cCCCEEEeeCCCcchhhHHHhc
Confidence 3665555544432 3445555 899999999999976554211 22334 4999999999998777 44
Q ss_pred ccccceeeecCCCcccccccccccC--CCccCCCCCccEEEecCCCCCcccCcc-------ccccchhcccccccccC-C
Q 040255 528 CAEKLVSLKMPCTKVEQLWDDVQRL--PSSLCTFKTPITFEIIDCKMLERLPDE-------LENLEYLTVKGTTIREL-P 597 (869)
Q Consensus 528 ~~~~L~~L~L~~n~l~~l~~~~~~l--p~~~~~l~~L~~L~L~~~~~l~~lp~~-------l~~L~~L~L~~n~i~~l-P 597 (869)
.+++|++|+|++|++... ..+ +..+..+++|++|+|++|. +..+|.. +++|++|+|++|.++.+ |
T Consensus 167 ~l~~L~~L~Ls~N~l~~~----~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGE----RGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp CCTTCCEEECCSCTTCHH----HHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred cCCCCCEEECCCCCCccc----hhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 789999999999997521 112 2234688999999999998 7766652 68999999999999976 8
Q ss_pred CCcCCc---cccceecccccccccccCccccCCCCCCEEecCCCCCCc-ccCCCCcccceeecccCC
Q 040255 598 ESLGRL---SWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQ-TLPELPCNLGLLSARNCT 660 (869)
Q Consensus 598 ~~i~~l---~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~-~lp~~~~~L~~L~l~~c~ 660 (869)
..++.+ ++|++|+|++| .+..+|..+. ++|+.|+|++|+..+ ..+..+++|+.|++++++
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred hhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 888887 69999999999 8889998875 899999999976443 234457889999998864
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.50 E-value=1.6e-12 Score=143.20 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=154.6
Q ss_pred ccCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhh--ccCCHHHH
Q 040255 146 FQSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAE--ETGGIKDL 223 (869)
Q Consensus 146 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s--~~~~~~~l 223 (869)
++..++.+|||++++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+... ... .......+
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 77 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLR-KFEERNYISYKDF 77 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGG-GGTTCSCCCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEch-hhccccCCCHHHH
Confidence 44456789999999999999 753 689999999999999999999986532 4666522 110 00122233
Q ss_pred HHHHHHHhh-------------c-------CC----------CCCCHHHHHHHHcc---CceEEEecCCC----------
Q 040255 224 QKKLLSELS-------------K-------DG----------NMRNIESQLNRLAR---KKVRIVFDDVT---------- 260 (869)
Q Consensus 224 ~~~il~~l~-------------~-------~~----------~~~~~~~l~~~L~~---kr~LlVLDDv~---------- 260 (869)
...+...+. . .. .......+.+.+.. ++++|||||++
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 322222211 0 00 01124445454532 48999999995
Q ss_pred -----------CCcEEEEEeCchhhhhh-----------cCC-CeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHH
Q 040255 261 -----------SGSRVIITTRDKQVLKN-----------CWA-NKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTD 317 (869)
Q Consensus 261 -----------~gsrIivTTR~~~v~~~-----------~~~-~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~ 317 (869)
++.++|+|+|....... .+. ...+++.+|+.+|+.+++...+-......... .
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~ 233 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----E 233 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----H
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----H
Confidence 36789999998653221 111 35799999999999999987542111111221 7
Q ss_pred HHHHHcCCCchhHHHHHhhhcC-CCHHHHHHH-HHHHhcCCCchhhhHHH-hhh--ccCcHHHHHHHhhcccccCCCCHH
Q 040255 318 KAIKYAQGVPLALKVLGCYLCG-RSKEVWESA-MRKLEIIPHVEIEEVLK-ISY--DSLDDSQKNVFLDIACFLEGEHRD 392 (869)
Q Consensus 318 ~i~~~~~GlPLal~~~g~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~L~-~Sy--~~L~~~~k~~fl~~a~F~~~~~~~ 392 (869)
.+++.++|+|+++..++..+.. .+...|... .+... ..+...+. +.+ ..|++..+.++..+|+ .. +..
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g~--~~~ 306 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-CG--KWS 306 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-CB--CHH
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-CC--CHH
Confidence 8999999999999999877642 233333221 11110 01111121 111 1688999999999998 22 444
Q ss_pred HHHH-----------------HHhh--cCcceEeccCCeEE-ecHHHHHHh
Q 040255 393 EVIS-----------------IFDA--SKSLINLDLFYRIR-MHDLLRDMG 423 (869)
Q Consensus 393 ~l~~-----------------~~~~--~~sLi~~~~~~~~~-mHdll~~~~ 423 (869)
.+.. .+.. +.+||... .+.|+ -|+++++..
T Consensus 307 ~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 307 DVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 4332 1111 67787766 35666 467777653
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=1.2e-13 Score=164.60 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=88.8
Q ss_pred ccchhcccccccccC--CCCcCCccccceeccccccccccc-CccccCCCCCCEEecCCCCCCcc-cCCC---Cccccee
Q 040255 582 NLEYLTVKGTTIREL--PESLGRLSWVKRLILSNNSNLERI-PESIRHLSKLTFLFISHCERLQT-LPEL---PCNLGLL 654 (869)
Q Consensus 582 ~L~~L~L~~n~i~~l--P~~i~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~-lp~~---~~~L~~L 654 (869)
+|+.+++++++.... +..+..+++|+.++++.| .+..+ |..+..+++|+.|+|++|+.... +|.. +++|+.|
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred cccchhhhhcccccccccccccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 334444444443322 235667888888888888 44444 44577788888888888775554 3443 4678888
Q ss_pred ecccCCCCccc-cCCCCCCccceEEeccCCCCCCchhhhhhhhccccccccccccCCceeeecCCCCCCcccccC
Q 040255 655 SARNCTSLEKL-PAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGIKKSMYFPGNEIPKWFRHQ 728 (869)
Q Consensus 655 ~l~~c~~l~~l-p~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~pg~~iP~w~~~~ 728 (869)
++++|. +..+ |..+.++++|+.|++++| .+..+.+..+..+..++.++++.|.+ .+..|.+|.+.
T Consensus 500 ~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~N------~l~~l~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~l~~l 565 (635)
T 4g8a_A 500 DLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN------NFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHF 565 (635)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEECTTS------CCCBCCCGGGTTCTTCCEEECTTSCC--CBCCSSCTTCC
T ss_pred ECCCCc-cCCcChHHHcCCCCCCEEECCCC------cCCCCChhHHhCCCCCCEEECCCCcC--CCCCHHHHHhh
Confidence 888864 4444 557888888888888873 34444444555567777777777776 45566666543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=1.1e-13 Score=140.56 Aligned_cols=170 Identities=19% Similarity=0.293 Sum_probs=125.1
Q ss_pred EEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCCCCccE
Q 040255 489 FLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPIT 564 (869)
Q Consensus 489 ~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~ 564 (869)
.++.+++....+|.++ + ++|++|++++|.++.+ ...+.+|++|++++|+++.+ .+..+.++++|++
T Consensus 11 ~v~c~~~~l~~~p~~~---~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI---P-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL------PNGVFNKLTSLTY 80 (208)
T ss_dssp EEECCSSCCSSCCSCC---C-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------CTTTTTTCTTCCE
T ss_pred EEEecCCCccCCCCCC---C-CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc------ChhhcCCCCCcCE
Confidence 3444444444444333 2 4777777777777666 23567888888888887632 2234678889999
Q ss_pred EEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCccccceecccccccccccCcc-ccCCCCCCEEecCCC
Q 040255 565 FEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHC 638 (869)
Q Consensus 565 L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c 638 (869)
|+|++|. +..+|.. +++|++|+|++|.++.+|.. +..+++|++|+|++| .+..+|.. +..+++|+.|++++|
T Consensus 81 L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 81 LNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 9999987 6677764 78899999999999988665 688999999999999 77788765 788999999999998
Q ss_pred CCCcccCCCCcccceeecccCCCCccccCCCCCCcc
Q 040255 639 ERLQTLPELPCNLGLLSARNCTSLEKLPAGLSSMSS 674 (869)
Q Consensus 639 ~~l~~lp~~~~~L~~L~l~~c~~l~~lp~~~~~l~~ 674 (869)
...... ++|+.|++..+...+.+|..++++..
T Consensus 159 ~~~~~~----~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWDCTC----PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBCCCT----TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CeecCC----CCHHHHHHHHHhCCceeeccCccccC
Confidence 655443 46788888887777788887776643
No 99
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.49 E-value=4.5e-15 Score=142.85 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=65.9
Q ss_pred CCcEEEccccccccCchhHHHHHHHccC--CceEEecC-CccCCCcchHHHHHHhh-hhceeeeeeccccccccc
Q 040255 1 MYDVFLSFRGEDTRDNFTSHLHHVLSLK--SIKTFIDD-QLIRGDNISQSLLGTIE-ASCIAIIIFSERYASSRW 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~l~~~L~~~--gi~~f~d~-~~~~g~~i~~~l~~ai~-~s~~~ivv~S~~ya~s~w 71 (869)
+|||||||+|+| ++||+||+.+|+++ |+++|+|+ ++.+|+.|.++|.+||+ .|+++|+|+|++|++|.|
T Consensus 16 ~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 16 RFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp CEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred ceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 499999999999 68999999999985 69999999 99999999999999999 799999999999999999
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=6e-14 Score=165.21 Aligned_cols=162 Identities=21% Similarity=0.250 Sum_probs=83.9
Q ss_pred ccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 482 SKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 482 ~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
..+++|+.|+++++....++ .+..++ +|+.|++++|.+..+ ...+.+|+.|+|++|.+.. +| .+..+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~--~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-------l~-~l~~l 108 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLP--NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-------LS-SLKDL 108 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCT--TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-------CT-TSTTC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCC--CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-------Ch-hhccC
Confidence 34555555555554443333 344443 555555555555555 3445555555555555542 22 34555
Q ss_pred CCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCC
Q 040255 560 KTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISH 637 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~ 637 (869)
++|+.|+|++|. +..+|.. +++|+.|+|++|.++.+ ..++.+++|+.|+|++| .+..+++ +..|++|+.|+|++
T Consensus 109 ~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 109 KKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp TTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcC
Confidence 555555555555 4444433 55555555555555555 34555555555555555 4444443 55555555555555
Q ss_pred CCCCcccCCC--CcccceeecccC
Q 040255 638 CERLQTLPEL--PCNLGLLSARNC 659 (869)
Q Consensus 638 c~~l~~lp~~--~~~L~~L~l~~c 659 (869)
| .+..+|.+ +++|+.|++.+|
T Consensus 185 N-~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 185 N-HISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp S-CCCBCGGGTTCTTCSEEECCSE
T ss_pred C-CCCCChHHccCCCCCEEEccCC
Confidence 4 23334432 345555555554
No 101
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.48 E-value=7.8e-15 Score=141.04 Aligned_cols=71 Identities=25% Similarity=0.459 Sum_probs=65.8
Q ss_pred CCcEEEccccccc---------cCchhHHHHH-HHc-cCCceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccc-
Q 040255 1 MYDVFLSFRGEDT---------RDNFTSHLHH-VLS-LKSIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYA- 67 (869)
Q Consensus 1 ~~dvF~sf~g~d~---------r~~f~~~l~~-~L~-~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya- 67 (869)
.|||||||+|+|+ |++||.|+.. +|+ ++|+++|+|+ ++.+|+.|.++|.+||++||++|+|+|++|+
T Consensus 2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~ 81 (159)
T 1t3g_A 2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV 81 (159)
T ss_dssp CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence 5999999999997 5789999775 699 7999999999 9999999999999999999999999999996
Q ss_pred cccc
Q 040255 68 SSRW 71 (869)
Q Consensus 68 ~s~w 71 (869)
.|.|
T Consensus 82 ~S~w 85 (159)
T 1t3g_A 82 RRGW 85 (159)
T ss_dssp TTTT
T ss_pred cChH
Confidence 9999
No 102
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.48 E-value=7.5e-15 Score=143.54 Aligned_cols=69 Identities=23% Similarity=0.433 Sum_probs=65.4
Q ss_pred CCcEEEccccccccCchhHH-HHHHHcc--CCceEEecC-CccCCCcchHHHHHHhhhhceeeeeeccccccccc
Q 040255 1 MYDVFLSFRGEDTRDNFTSH-LHHVLSL--KSIKTFIDD-QLIRGDNISQSLLGTIEASCIAIIIFSERYASSRW 71 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~-l~~~L~~--~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~w 71 (869)
+|||||||+|+|+ +||.+ |+.+|++ +|+++|+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.|
T Consensus 35 ~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 35 RFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 4999999999995 89985 9999998 899999999 99999999999999999999999999999999999
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=5.2e-14 Score=141.72 Aligned_cols=146 Identities=13% Similarity=0.154 Sum_probs=99.7
Q ss_pred ccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 482 SKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 482 ~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
+.|++|+.|++++|....+| ++..++ +|++|++++|.+..+ ...+++|++|++++|.++ ...|..+.++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~--~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~------~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAH--NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT------SDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCT--TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCB------GGGSCCCTTC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCC--CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccC------cccChhhcCC
Confidence 67889999999988777666 666665 888888888876665 445677777777777765 2234456667
Q ss_pred CCccEEEecCCCCCcccCcc---ccccchhcccccc-cccCCCCcCCccccceecccccccccccCccccCCCCCCEEec
Q 040255 560 KTPITFEIIDCKMLERLPDE---LENLEYLTVKGTT-IRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFI 635 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~-i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L 635 (869)
++|++|+|++|......|.. +++|++|+|++|. ++.+| .+..+++|+.|++++| .+..+| .+..+++|+.|++
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEe
Confidence 77777777777633333433 6667777777776 66665 5666777777777777 666666 5666777777777
Q ss_pred CCCC
Q 040255 636 SHCE 639 (869)
Q Consensus 636 ~~c~ 639 (869)
++|+
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 7644
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.4e-13 Score=147.49 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=131.0
Q ss_pred CCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccch
Q 040255 510 AEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEY 585 (869)
Q Consensus 510 ~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~ 585 (869)
++|+.|++++|.++.+ ...+.+|+.|++++|+++. ++. +.++++|++|+|++|. +..+|.. +++|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-------~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 116 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-------IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKS 116 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCE
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-------Ccc-cccCCCCCEEECCCCc-CCCChhhccCCCCCE
Confidence 3899999999998888 5668899999999998874 333 7788999999999997 7777766 889999
Q ss_pred hcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC--CcccceeecccCCCCc
Q 040255 586 LTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNCTSLE 663 (869)
Q Consensus 586 L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~ 663 (869)
|+|++|.++.+| .++.+++|+.|+|++| .+..+ ..++.+++|+.|++++|. +..++.. +++|+.|++++| .++
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N-~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN-HIS 191 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCC-cCC
Confidence 999999999874 6888999999999999 78888 478999999999999865 4445443 578889999886 566
Q ss_pred cccCCCCCCccceEEeccCC
Q 040255 664 KLPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 664 ~lp~~~~~l~~L~~l~l~~~ 683 (869)
.+|. +..+++|+.|++++|
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEE
T ss_pred CChh-hccCCCCCEEECcCC
Confidence 7764 788888999988774
No 105
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.46 E-value=1.1e-12 Score=147.72 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=144.1
Q ss_pred CCcceeccccHHHHHHhh-cc--CC--CCeEEEEE--EecCCchHHHHHHHHHHhhcCc-----cCc-eEEEEeehhhhc
Q 040255 150 NKGLVGVECSIEEIESLL-CI--GS--EGVCKLRI--WGIGGISKITIAGAVFNKISRH-----FEG-SYFALNVREAEE 216 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~s~ 216 (869)
++.++||+.++++|...+ .. .. ...+.+.| +|++|+||||||++++++.... +.. .+|+. ...
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 96 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFN 96 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGG
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CCC
Confidence 467999999999999988 42 11 23345555 9999999999999999976543 222 34554 223
Q ss_pred cCCHHHHHHHHHHHhhcCCCC--CC----HHHHHHHHc--cCceEEEecCCC-----------------------C--C-
Q 040255 217 TGGIKDLQKKLLSELSKDGNM--RN----IESQLNRLA--RKKVRIVFDDVT-----------------------S--G- 262 (869)
Q Consensus 217 ~~~~~~l~~~il~~l~~~~~~--~~----~~~l~~~L~--~kr~LlVLDDv~-----------------------~--g- 262 (869)
......+...++..++..... .+ ...+.+.+. +++++|||||++ + +
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 456677888888887643221 12 344455554 679999999996 2 4
Q ss_pred -cE--EEEEeCchhhhhhc---------CCCeEEEeCCCCHHHHHHHHHHhh---cCCCCCCccHHHHHHHHHHHcC---
Q 040255 263 -SR--VIITTRDKQVLKNC---------WANKKYRMKELVYADAHKLFCQWA---FGGDHLDASHIELTDKAIKYAQ--- 324 (869)
Q Consensus 263 -sr--IivTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~~~--- 324 (869)
++ +|+||+...+.... .....+++++|+.+++.++|...+ +.... -..+....+++.++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV---WEPRHLELISDVYGEDK 253 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS---CCHHHHHHHHHHHCGGG
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC---CChHHHHHHHHHHHHhc
Confidence 55 67788765532111 112349999999999999997653 33211 22467788999999
Q ss_pred ---CCchhHHHHHhhh------cCC---CHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhccccc
Q 040255 325 ---GVPLALKVLGCYL------CGR---SKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIACFL 386 (869)
Q Consensus 325 ---GlPLal~~~g~~L------~~~---~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a~F~ 386 (869)
|.|..+..+.... .+. +.+.+..++..... ...+.-++..||+..+.++..+|.+.
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9997655544321 111 33444444433210 23455677899999999999999764
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.3e-13 Score=160.65 Aligned_cols=184 Identities=20% Similarity=0.208 Sum_probs=143.9
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecC
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMP 538 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~ 538 (869)
+++.+.+..+... .+++.. .++|+.|++++|....+| ..+ ++|++|++++|.+..+..-..+|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~---~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l--~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLS---SLPDNL---PPQITVLEITQNALISLP---ELP--ASLEYLDACDNRLSTLPELPASLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCS---CCCSCC---CTTCSEEECCSSCCSCCC---CCC--TTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred CccEEEeCCCCCC---ccCHhH---cCCCCEEECcCCCCcccc---ccc--CCCCEEEccCCCCCCcchhhcCCCEEECC
Confidence 4555555444433 244333 378999999998877777 233 59999999999998882223399999999
Q ss_pred CCcccccccccccCCCccCCCCCccEEEecCCCCCcccCccccccchhcccccccccCCCCcCCccccceeccccccccc
Q 040255 539 CTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDELENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLE 618 (869)
Q Consensus 539 ~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~ 618 (869)
+|+++. +|. .+++|+.|+|++|. +..+|..+++|++|+|++|.|+.+|. ++ ++|+.|+|++| .+.
T Consensus 129 ~N~l~~-------lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 129 NNQLTM-------LPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLE 193 (571)
T ss_dssp SSCCSC-------CCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCS
T ss_pred CCcCCC-------CCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCC
Confidence 999873 554 67899999999998 77799888999999999999999998 76 89999999999 899
Q ss_pred ccCccccCCCCC-------CEEecCCCCCCcccCCC---CcccceeecccCCCCccccCCCCCC
Q 040255 619 RIPESIRHLSKL-------TFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSM 672 (869)
Q Consensus 619 ~lP~~i~~L~~L-------~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l 672 (869)
.+|. +.. +| +.|+|++| .+..+|.. +++|+.|++++|+..+.+|..+.++
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 9998 655 77 99999985 56788875 5788999999987767777655544
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=6.6e-15 Score=164.72 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=114.7
Q ss_pred cccCCcceEEEEcCCCCcc----ccCcC-------CCCCCCCeeEEecCCCCCCc-----c---ccccccceeeecCCCc
Q 040255 481 FSKMPKLRFLRFYGDKNKC----MVSHL-------EGVPFAEVRHLEWPQCPLKT-----L---NICAEKLVSLKMPCTK 541 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~----~~~~l-------~~l~~~~L~~L~l~~~~l~~-----l---~~~~~~L~~L~L~~n~ 541 (869)
|.++++|+.|+++++.... +|.++ ..++ +|++|++++|.+.. + ...+++|+.|+|++|.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~--~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP--KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT--TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC--cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 5567777777776643332 23222 3443 77777777777665 2 3445677777777776
Q ss_pred ccccccccccCCCccCCC---------CCccEEEecCCCCC-cccCc---c---ccccchhcccccccc------cCCCC
Q 040255 542 VEQLWDDVQRLPSSLCTF---------KTPITFEIIDCKML-ERLPD---E---LENLEYLTVKGTTIR------ELPES 599 (869)
Q Consensus 542 l~~l~~~~~~lp~~~~~l---------~~L~~L~L~~~~~l-~~lp~---~---l~~L~~L~L~~n~i~------~lP~~ 599 (869)
++.. +...++..+..+ ++|++|+|++|... ..+|. . +++|++|+|++|.++ -+|..
T Consensus 134 l~~~--~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~ 211 (386)
T 2ca6_A 134 LGPQ--AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211 (386)
T ss_dssp CHHH--HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT
T ss_pred CCHH--HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH
Confidence 6421 111222233333 67777777777622 23442 1 566777777777766 23446
Q ss_pred cCCccccceecccccccc-----cccCccccCCCCCCEEecCCCCCCcc----cCCC-----CcccceeecccCCCCc--
Q 040255 600 LGRLSWVKRLILSNNSNL-----ERIPESIRHLSKLTFLFISHCERLQT----LPEL-----PCNLGLLSARNCTSLE-- 663 (869)
Q Consensus 600 i~~l~~L~~L~Ls~n~~l-----~~lP~~i~~L~~L~~L~L~~c~~l~~----lp~~-----~~~L~~L~l~~c~~l~-- 663 (869)
+..+++|+.|+|++| .+ ..+|..+..+++|+.|+|++|..... +|.. .++|+.|++++|..-.
T Consensus 212 l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 212 LAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp GGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred hhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 667777777777777 45 55666677777777777777653322 2332 4567777776654322
Q ss_pred --cccCCC-CCCccceEEeccCCC
Q 040255 664 --KLPAGL-SSMSSVLYVNLCNFL 684 (869)
Q Consensus 664 --~lp~~~-~~l~~L~~l~l~~~~ 684 (869)
.+|..+ .++++|+.|++++|.
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHhcCCCceEEEccCCc
Confidence 266555 456667777766643
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=2.5e-13 Score=136.69 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=114.9
Q ss_pred ccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccchhccccccccc-CCCCcCCcc
Q 040255 528 CAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRE-LPESLGRLS 604 (869)
Q Consensus 528 ~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~-lP~~i~~l~ 604 (869)
.+.+|+.|++++|.++ .+| .+..+++|++|++++|. +..+|.. +++|++|++++|.++. .|..++.++
T Consensus 42 ~l~~L~~L~l~~n~i~-------~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-------DLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHTCCEEEEESSCCS-------CCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hcCCccEEeccCCCcc-------ChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 4556777777777765 344 46778899999999984 6666655 8899999999999984 688899999
Q ss_pred ccceeccccccccc-ccCccccCCCCCCEEecCCCCCCcccCCC--CcccceeecccCCCCccccCCCCCCccceEEecc
Q 040255 605 WVKRLILSNNSNLE-RIPESIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLC 681 (869)
Q Consensus 605 ~L~~L~Ls~n~~l~-~lP~~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~ 681 (869)
+|++|+|++| .+. ..|..++.+++|++|++++|..++.+|.. +++|+.|++++| .+..++ .+..+++|+.|+++
T Consensus 113 ~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 113 SLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp TCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEEC
T ss_pred CCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEee
Confidence 9999999999 555 47778999999999999998767888754 678999999886 466666 67888999999988
Q ss_pred CCC
Q 040255 682 NFL 684 (869)
Q Consensus 682 ~~~ 684 (869)
+|.
T Consensus 190 ~N~ 192 (197)
T 4ezg_A 190 SQT 192 (197)
T ss_dssp BC-
T ss_pred Ccc
Confidence 743
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=5e-13 Score=157.37 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=135.8
Q ss_pred eeeccccccccccceeeecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeee
Q 040255 459 AIEGISLDMNKVNREIHMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLK 536 (869)
Q Consensus 459 ~v~~i~l~~~~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~ 536 (869)
.++.+.++.+.+. .+ ..|..+++|+.|+|++|....+++ +..++ +|+.|++++|.+..+ ...+.+|+.|+
T Consensus 44 ~L~~L~l~~n~i~---~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~--~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 44 SIDQIIANNSDIK---SV--QGIQYLPNVTKLFLNGNKLTDIKP-LTNLK--NLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp TCCCCBCTTCCCC---CC--TTGGGCTTCCEEECTTSCCCCCGG-GGGCT--TCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred CCCEEECcCCCCC---CC--hHHccCCCCCEEEeeCCCCCCChh-hccCC--CCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 3444445444433 22 358999999999999988777776 66665 999999999999988 67789999999
Q ss_pred cCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceeccccc
Q 040255 537 MPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNN 614 (869)
Q Consensus 537 L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n 614 (869)
|++|.+..+ + .+..+++|+.|+|++|. +..++.. +++|+.|+|++|.|+.+++ +..+++|+.|+|++|
T Consensus 116 Ls~N~l~~l-------~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 116 LEHNGISDI-------N-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CTTSCCCCC-------G-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ecCCCCCCC-------c-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence 999998743 2 57789999999999998 7777655 8999999999999998876 999999999999999
Q ss_pred ccccccCccccCCCCCCEEecCCCCCC
Q 040255 615 SNLERIPESIRHLSKLTFLFISHCERL 641 (869)
Q Consensus 615 ~~l~~lP~~i~~L~~L~~L~L~~c~~l 641 (869)
.+..+| .+..|++|+.|+|++|+..
T Consensus 186 -~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 186 -HISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -CCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred -CCCCCh-HHccCCCCCEEEccCCcCc
Confidence 888886 6999999999999997643
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=1.8e-14 Score=161.21 Aligned_cols=230 Identities=9% Similarity=0.044 Sum_probs=163.3
Q ss_pred ccccccCCcceEEEEcCCCCcc-----ccCcCCCCCCCCeeEEecCCCCCCcc--------------ccccccceeeecC
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKC-----MVSHLEGVPFAEVRHLEWPQCPLKTL--------------NICAEKLVSLKMP 538 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~-----~~~~l~~l~~~~L~~L~l~~~~l~~l--------------~~~~~~L~~L~L~ 538 (869)
...+..+++|+.|++++|.... ++..+..++ +|++|++++|.+..+ ...+++|++|+|+
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK--DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT--TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC--CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4567889999999999875443 333466665 999999999876543 1467899999999
Q ss_pred CCcccccccccccCCCccCCCCCccEEEecCCCCCccc-----Ccc---c---------cccchhcccccccc--cCC--
Q 040255 539 CTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERL-----PDE---L---------ENLEYLTVKGTTIR--ELP-- 597 (869)
Q Consensus 539 ~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~l-----p~~---l---------~~L~~L~L~~n~i~--~lP-- 597 (869)
+|.+.. .+...+|..+.++++|++|+|++|. ++.. +.. + ++|++|+|++|.++ .+|
T Consensus 103 ~n~l~~--~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 103 DNAFGP--TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp SCCCCT--TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCcCCH--HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 999873 1233467778889999999999998 5432 222 2 89999999999997 445
Q ss_pred -CCcCCccccceeccccccccc------ccCccccCCCCCCEEecCCCCCC----cccCCC---CcccceeecccCCCCc
Q 040255 598 -ESLGRLSWVKRLILSNNSNLE------RIPESIRHLSKLTFLFISHCERL----QTLPEL---PCNLGLLSARNCTSLE 663 (869)
Q Consensus 598 -~~i~~l~~L~~L~Ls~n~~l~------~lP~~i~~L~~L~~L~L~~c~~l----~~lp~~---~~~L~~L~l~~c~~l~ 663 (869)
..+..+++|++|+|++| .++ .+|..+..+++|+.|+|++|... ..+|.. .++|+.|++++|..-.
T Consensus 180 ~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 46778899999999999 776 34558899999999999997753 556643 5789999999986433
Q ss_pred c----ccCCC--CCCccceEEeccCCCCCCchhhhhhhhccc-cccccccccCCceeee
Q 040255 664 K----LPAGL--SSMSSVLYVNLCNFLKLDPNELSEIVKDGW-MKHSLYEERGIKKSMY 715 (869)
Q Consensus 664 ~----lp~~~--~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~ 715 (869)
. +|..+ +++++|+.|++++|.-.. ..+. .++... ..++.++.+++..|.+
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~-~g~~-~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAVR-TLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBH-HHHH-HHHHHHHHHCTTCCEEECTTSBS
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCH-HHHH-HHHHHHHhcCCCceEEEccCCcC
Confidence 2 45555 448899999998854221 0010 122222 2345666666665555
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=1.2e-12 Score=135.10 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=74.5
Q ss_pred eEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCCCCcc
Q 040255 488 RFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPI 563 (869)
Q Consensus 488 r~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~ 563 (869)
+.++.+++....+|.++. ++|++|++++|.+..+ +..+.+|+.|+|++|+++.+. +..+.++++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~------~~~~~~l~~L~ 91 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP------VGVFDSLTQLT 91 (229)
T ss_dssp TEEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCC
T ss_pred CEeEccCCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC------hhhcccCCCcC
Confidence 345555555555554332 3666666666665554 224455555555555554221 12244555666
Q ss_pred EEEecCCCCCcccCcc----ccccchhcccccccccCCCCcCCccccceecccccccccccCcc-ccCCCCCCEEecCCC
Q 040255 564 TFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHC 638 (869)
Q Consensus 564 ~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c 638 (869)
+|+|++|. +..+|.. +++|++|+|++|.|+.+|..+..+++|+.|+|++| .+..+|.. +..+++|+.|+|++|
T Consensus 92 ~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 92 VLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 66666554 4444432 45555555555555555555555555666666555 55555532 555555555555554
Q ss_pred C
Q 040255 639 E 639 (869)
Q Consensus 639 ~ 639 (869)
+
T Consensus 170 ~ 170 (229)
T 3e6j_A 170 P 170 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=1.8e-12 Score=133.69 Aligned_cols=124 Identities=19% Similarity=0.297 Sum_probs=82.0
Q ss_pred eEEecCCCCCCcc-ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhc
Q 040255 513 RHLEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLT 587 (869)
Q Consensus 513 ~~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~ 587 (869)
+.++.+++.+..+ ..-+.+|+.|+|++|.++. ..|..+.++++|+.|+|++|. +..+|.. +++|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEE
Confidence 3456666666666 3334677777777777763 234456677777777777776 5666653 66777777
Q ss_pred ccccccccCCCC-cCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccC
Q 040255 588 VKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLP 645 (869)
Q Consensus 588 L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp 645 (869)
|++|.|+.+|.. +..+++|++|+|++| .+..+|..+..+++|+.|+|++| .+..+|
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~ 151 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIP 151 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccC
Confidence 777777766544 466777777777777 67777777777777777777764 334443
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=1.4e-12 Score=133.58 Aligned_cols=139 Identities=17% Similarity=0.278 Sum_probs=87.6
Q ss_pred EEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCCCCCccE
Q 040255 489 FLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPIT 564 (869)
Q Consensus 489 ~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~ 564 (869)
.++++++....+|..+. ++|+.|++++|.++.+ +..+.+|+.|+|++|.++.+ .|..+.++++|++
T Consensus 15 ~v~c~~~~l~~iP~~l~----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL------APDAFQGLRSLNS 84 (220)
T ss_dssp EEECTTSCCSSCCSSCC----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE------CTTTTTTCSSCCE
T ss_pred EEEcCCCCcCcCCCccC----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc------CHHHhhCCcCCCE
Confidence 45555555555554432 4667777777766655 23456677777777766522 3455666777777
Q ss_pred EEecCCCCCcccCcc----ccccchhcccccccccC-CCCcCCccccceecccccccccccCcc-ccCCCCCCEEecCCC
Q 040255 565 FEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHC 638 (869)
Q Consensus 565 L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c 638 (869)
|+|++|. +..+|.. +++|++|+|++|.|+.+ |..+..+++|+.|+|++| .+..+|.. +..+++|+.|+|++|
T Consensus 85 L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 85 LVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 7777776 5666653 56677777777777755 455667777777777777 66666543 666777777777765
Q ss_pred C
Q 040255 639 E 639 (869)
Q Consensus 639 ~ 639 (869)
+
T Consensus 163 ~ 163 (220)
T 2v9t_B 163 P 163 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=133.00 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=99.8
Q ss_pred eEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-----ccccccceeeecCCCcccccccccccCCCccCCCCCc
Q 040255 488 RFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTP 562 (869)
Q Consensus 488 r~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L 562 (869)
+.++++++....+|..+ + ..++.|++++|.++.+ +..+.+|+.|+|++|+++.+ .+..+.++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~---~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i------~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---P-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI------EEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSSCCSCC---C-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE------CTTTTTTCTTC
T ss_pred CEeEeCCCCcccCccCC---C-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE------CHHHhCCCCCC
Confidence 46777776666666544 2 4667888888877766 23567788888888877633 23357777888
Q ss_pred cEEEecCCCCCcccCcc----ccccchhcccccccccC-CCCcCCccccceeccccccccccc-CccccCCCCCCEEecC
Q 040255 563 ITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLGRLSWVKRLILSNNSNLERI-PESIRHLSKLTFLFIS 636 (869)
Q Consensus 563 ~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L~L~ 636 (869)
++|+|++|. +..+|.. +++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+ |..+..+++|+.|+|+
T Consensus 84 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 84 NEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEec
Confidence 888888887 5556553 67788888888888766 667777888888888888 66666 5667778888888887
Q ss_pred CCCC
Q 040255 637 HCER 640 (869)
Q Consensus 637 ~c~~ 640 (869)
+|+.
T Consensus 162 ~N~l 165 (220)
T 2v70_A 162 ANPF 165 (220)
T ss_dssp SCCE
T ss_pred CcCC
Confidence 7653
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=1.2e-12 Score=144.28 Aligned_cols=185 Identities=18% Similarity=0.191 Sum_probs=141.9
Q ss_pred CcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCc-c----cccccccee-eecCCCcccccccccccCCCccC
Q 040255 485 PKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKT-L----NICAEKLVS-LKMPCTKVEQLWDDVQRLPSSLC 557 (869)
Q Consensus 485 ~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~-l----~~~~~~L~~-L~L~~n~l~~l~~~~~~lp~~~~ 557 (869)
++++.|+|++|....+|.+ +..++ +|++|++++|.+.. + +..+.+|.+ +.+.+|+++.+ .|..+.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~--~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l------~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI------NPEAFQ 101 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCT--TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE------CTTSBC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCC--CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc------Cchhhh
Confidence 5799999999988888874 66776 99999999998744 3 335666554 56677888743 244678
Q ss_pred CCCCccEEEecCCCCCcccCcc----ccccchhcccc-cccccCCC-CcCCc-cccceecccccccccccCccccCCCCC
Q 040255 558 TFKTPITFEIIDCKMLERLPDE----LENLEYLTVKG-TTIRELPE-SLGRL-SWVKRLILSNNSNLERIPESIRHLSKL 630 (869)
Q Consensus 558 ~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~-n~i~~lP~-~i~~l-~~L~~L~Ls~n~~l~~lP~~i~~L~~L 630 (869)
++++|++|++++|. +..+|+. ..++..|++.+ +.+..+|. .+..+ ..|+.|+|++| .+..+|..+...++|
T Consensus 102 ~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L 179 (350)
T 4ay9_X 102 NLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQL 179 (350)
T ss_dssp CCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEE
T ss_pred hccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccch
Confidence 89999999999997 7777765 45567777755 57887765 44554 46889999999 899999988888899
Q ss_pred CEEecCCCCCCcccCCC----CcccceeecccCCCCccccC-CCCCCccceEEec
Q 040255 631 TFLFISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNL 680 (869)
Q Consensus 631 ~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l 680 (869)
+.|++.+|+.++.+|.. +++|+.|+++++ .++.+|. .+.++.+|+.++.
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccC
Confidence 99999999999999963 578999999985 7888987 4555555554443
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.2e-12 Score=132.73 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=129.5
Q ss_pred CCcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 484 MPKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 484 l~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
.++|+.|++++|....++.. +..++ +|++|++++|.++.+ +..+.+|++|+|++|+++.+ .+..+.+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELT--SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL------PNGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------CTTTTTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccc--cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc------CHhHhcC
Confidence 46899999999877777664 44555 999999999998887 34688999999999998733 2234688
Q ss_pred CCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCccccceecccccccccccCccccCCCCCCEE
Q 040255 559 FKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPESIRHLSKLTFL 633 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L 633 (869)
+++|++|+|++|. +..+|.. +++|++|+|++|.++.+|.. +..+++|+.|+|++|.. .+.+++|+.|
T Consensus 99 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L 170 (208)
T 2o6s_A 99 LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYL 170 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------CCCTTTTHHH
T ss_pred ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------ecCCCCHHHH
Confidence 9999999999997 7777764 78999999999999988765 78899999999999932 2456789999
Q ss_pred ecCCCCCCcccCCCCcccceeecccCCC
Q 040255 634 FISHCERLQTLPELPCNLGLLSARNCTS 661 (869)
Q Consensus 634 ~L~~c~~l~~lp~~~~~L~~L~l~~c~~ 661 (869)
+++.|+..+.+|..++++.. +...|..
T Consensus 171 ~~~~n~~~g~ip~~~~~l~~-~~~~C~~ 197 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAGSVAP-DSAKCSG 197 (208)
T ss_dssp HHHHHHCTTTBBCTTSSBCT-TCSBBTT
T ss_pred HHHHHhCCceeeccCccccC-Ccccccc
Confidence 99999999999988776654 4445543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.1e-12 Score=138.40 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=77.9
Q ss_pred ccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCccccccccceeeecCCCcccccccccccCCCccCCC
Q 040255 480 AFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTLNICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTF 559 (869)
Q Consensus 480 ~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l 559 (869)
.+..+++|+.|++++|....++ ++..++ +|+.|++++|.+..+ |. +.++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~--~L~~L~L~~N~i~~~---------------------------~~-l~~l 84 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFT--NLKELHLSHNQISDL---------------------------SP-LKDL 84 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCT--TCCEEECCSSCCCCC---------------------------GG-GTTC
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCC--CCCEEECCCCccCCC---------------------------hh-hccC
Confidence 4567777777777776555444 444443 555555555554443 21 4455
Q ss_pred CCccEEEecCCCCCcccCcc-ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCC
Q 040255 560 KTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHC 638 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c 638 (869)
++|+.|+|++|. +..+|.. .++|++|+|++|.++.+| .++.+++|+.|+|++| .+..+| .++.+++|+.|+|++|
T Consensus 85 ~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 85 TKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS
T ss_pred CCCCEEECCCCc-cCCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC
Confidence 555555555554 4444433 345555566666555554 3555666666666666 555554 4555666666666654
Q ss_pred CCCcccCCC--CcccceeecccC
Q 040255 639 ERLQTLPEL--PCNLGLLSARNC 659 (869)
Q Consensus 639 ~~l~~lp~~--~~~L~~L~l~~c 659 (869)
. +..++.. +++|+.|++.++
T Consensus 161 ~-i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 161 E-ITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp C-CCBCTTSTTCCCCCEEEEEEE
T ss_pred c-CcchHHhccCCCCCEEeCCCC
Confidence 3 2223222 345555555554
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1.1e-12 Score=138.29 Aligned_cols=157 Identities=19% Similarity=0.286 Sum_probs=120.8
Q ss_pred CeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccchh
Q 040255 511 EVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYL 586 (869)
Q Consensus 511 ~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L 586 (869)
++..+++.++.++.+ ...+.+|+.|++++|.++. +| .+..+++|+.|+|++|. +..+|.. +++|++|
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-------l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L 90 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-------LA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-------CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEE
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-------ch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEE
Confidence 344445555555555 3456778888888887763 34 57788899999999997 7777765 8899999
Q ss_pred cccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC--CcccceeecccCCCCcc
Q 040255 587 TVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNCTSLEK 664 (869)
Q Consensus 587 ~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c~~l~~ 664 (869)
+|++|.++.+|.... ++|+.|+|++| .+..+| .+..+++|+.|+|++|+ +..+|.. +++|+.|++++| .+..
T Consensus 91 ~L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N-~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGN-EITN 164 (263)
T ss_dssp ECCSSCCSCCTTCCC--SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTS-CCCB
T ss_pred ECCCCccCCcCcccc--CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCC-cCcc
Confidence 999999998886544 89999999999 888886 58999999999999854 5666653 678899999885 4555
Q ss_pred ccCCCCCCccceEEeccCC
Q 040255 665 LPAGLSSMSSVLYVNLCNF 683 (869)
Q Consensus 665 lp~~~~~l~~L~~l~l~~~ 683 (869)
+ ..+..+++|+.+++++|
T Consensus 165 ~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEE
T ss_pred h-HHhccCCCCCEEeCCCC
Confidence 5 56778888888888774
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1.8e-13 Score=165.04 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=58.1
Q ss_pred ccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCCcc
Q 040255 528 CAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGRLS 604 (869)
Q Consensus 528 ~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~ 604 (869)
.+.+|+.|+|++|.+. .+|..+.++++|++|+|++|. +..+|.. +++|++|+|++|.|+.+|..|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-------~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-------NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp CCCCCCEEECTTSCCS-------CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred cCCCCcEEECCCCCCC-------CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 3445555555555543 233334445555555555554 4455543 5555555555555555555555555
Q ss_pred ccceecccccccccccCccccCCCCCCEEecCCCCCCcccCC
Q 040255 605 WVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPE 646 (869)
Q Consensus 605 ~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~ 646 (869)
+|++|+|++| .++.+|.+|+.|++|+.|+|++|+..+.+|.
T Consensus 294 ~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 5555555555 5555555555555555555555544444443
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=2e-12 Score=143.11 Aligned_cols=145 Identities=21% Similarity=0.287 Sum_probs=105.9
Q ss_pred eEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---cc--ccccceeeecCCCcccccccccccCCCccCCCCCc
Q 040255 488 RFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NI--CAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTP 562 (869)
Q Consensus 488 r~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~--~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L 562 (869)
+.++++++....+|..+ + ..++.|++++|.+..+ .+ .+.+|+.|+|++|+++.+ .|..+.++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~---~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i------~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---P-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI------SSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCSSCCSSC---C-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE------CTTTTTTCTTC
T ss_pred CEEEeCCCCcCccCccC---C-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc------ChhhccCCCCC
Confidence 46677666666666543 3 4678888888888777 22 678888888888888743 23457788888
Q ss_pred cEEEecCCCCCcccCcc----ccccchhcccccccccC-CCCcCCccccceecccccccccccCccc----cCCCCCCEE
Q 040255 563 ITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLGRLSWVKRLILSNNSNLERIPESI----RHLSKLTFL 633 (869)
Q Consensus 563 ~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~~l~~L~~L~Ls~n~~l~~lP~~i----~~L~~L~~L 633 (869)
+.|+|++|. +..+|.. +++|++|+|++|.|+.+ |..+..+++|+.|+|++| .+..+|..+ ..+++|+.|
T Consensus 91 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 91 RYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEE
T ss_pred CEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEE
Confidence 888888887 6677664 77888888888888866 667888888888888888 788888764 568888888
Q ss_pred ecCCCCCCcccC
Q 040255 634 FISHCERLQTLP 645 (869)
Q Consensus 634 ~L~~c~~l~~lp 645 (869)
+|++| .+..+|
T Consensus 169 ~L~~N-~l~~l~ 179 (361)
T 2xot_A 169 DLSSN-KLKKLP 179 (361)
T ss_dssp ECCSS-CCCCCC
T ss_pred ECCCC-CCCccC
Confidence 88874 455555
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=1.9e-14 Score=168.38 Aligned_cols=97 Identities=25% Similarity=0.254 Sum_probs=54.9
Q ss_pred ccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCCCCEEecCCCCCCcccCCC--CcccceeecccC
Q 040255 582 NLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSKLTFLFISHCERLQTLPEL--PCNLGLLSARNC 659 (869)
Q Consensus 582 ~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~l~~lp~~--~~~L~~L~l~~c 659 (869)
.|+.|+|++|.|+.+|. ++.+++|+.|+|++| .+..+|..++.|++|+.|+|++|. +..+|.. +++|+.|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCC
Confidence 45556666666666554 566666666666666 555666666666666666666533 3345532 445556666553
Q ss_pred CCCccc--cCCCCCCccceEEeccC
Q 040255 660 TSLEKL--PAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 660 ~~l~~l--p~~~~~l~~L~~l~l~~ 682 (869)
.+..+ |..++++++|+.|++++
T Consensus 519 -~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 519 -RLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp -CCCSSSTTGGGGGCTTCCEEECTT
T ss_pred -CCCCCCCcHHHhcCCCCCEEEecC
Confidence 33444 55566666666666655
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=1.3e-13 Score=152.72 Aligned_cols=200 Identities=15% Similarity=0.162 Sum_probs=112.8
Q ss_pred cccccCC-cceEEEEcCCCCccc-cCcCCC----CCCCCeeEEecCCCCCCcc----cc----cc-ccceeeecCCCccc
Q 040255 479 YAFSKMP-KLRFLRFYGDKNKCM-VSHLEG----VPFAEVRHLEWPQCPLKTL----NI----CA-EKLVSLKMPCTKVE 543 (869)
Q Consensus 479 ~~f~~l~-~Lr~L~l~~~~~~~~-~~~l~~----l~~~~L~~L~l~~~~l~~l----~~----~~-~~L~~L~L~~n~l~ 543 (869)
.+|.+++ +|+.|++++|..... +..+.. .. ++|+.|++++|.+... .. .. .+|+.|+|++|.++
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP-ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC-TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC-CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 5566676 777777776544332 112221 11 3677777777776544 11 11 57777777777765
Q ss_pred ccccccccCCCccCCC-CCccEEEecCCCCCc-----ccCcc---c-cccchhcccccccccCC-CC----cCCc-cccc
Q 040255 544 QLWDDVQRLPSSLCTF-KTPITFEIIDCKMLE-----RLPDE---L-ENLEYLTVKGTTIRELP-ES----LGRL-SWVK 607 (869)
Q Consensus 544 ~l~~~~~~lp~~~~~l-~~L~~L~L~~~~~l~-----~lp~~---l-~~L~~L~L~~n~i~~lP-~~----i~~l-~~L~ 607 (869)
.... ..+...+..+ ++|++|+|++|. ++ .++.. + ++|++|+|++|.++..+ .. +..+ ++|+
T Consensus 123 ~~~~--~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~ 199 (362)
T 3goz_A 123 SKSS--SEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199 (362)
T ss_dssp GSCH--HHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred cHHH--HHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCC
Confidence 3311 1111223332 477777777776 43 22222 2 36777777777776443 22 2233 4777
Q ss_pred eecccccccccc-----cCccccCC-CCCCEEecCCCCCCcccC--------CCCcccceeecccCC-------CCcccc
Q 040255 608 RLILSNNSNLER-----IPESIRHL-SKLTFLFISHCERLQTLP--------ELPCNLGLLSARNCT-------SLEKLP 666 (869)
Q Consensus 608 ~L~Ls~n~~l~~-----lP~~i~~L-~~L~~L~L~~c~~l~~lp--------~~~~~L~~L~l~~c~-------~l~~lp 666 (869)
+|+|++| .++. +|..+..+ ++|+.|+|++|. ++..+ ...++|+.|++++|. .+..++
T Consensus 200 ~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 200 SLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp EEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred EEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 7777777 5665 56556553 477777777754 33222 224567777777664 144455
Q ss_pred CCCCCCccceEEeccCCC
Q 040255 667 AGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 667 ~~~~~l~~L~~l~l~~~~ 684 (869)
..+.++++|+.+++++|.
T Consensus 278 ~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTSTTCCEEEEECTTSCB
T ss_pred HHhccCCceEEEecCCCc
Confidence 566677777777776643
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=1.4e-13 Score=150.50 Aligned_cols=216 Identities=15% Similarity=0.137 Sum_probs=158.0
Q ss_pred cceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCCccCCCCCc
Q 040255 486 KLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTP 562 (869)
Q Consensus 486 ~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L 562 (869)
.++.|+++++... +..+..+...+++.|++.+|.+... .+.+.+|++|++++|.++. ..+|..+..+++|
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~-----~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV-----STLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH-----HHHHHHHTTBCCC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH-----HHHHHHHhhCCCC
Confidence 3667777764322 2333333114899999999987766 6678999999999998762 1255567788999
Q ss_pred cEEEecCCCCCcccCcc---ccccchhccccc-ccc--cCCCCcCCccccceecccccccccc--cCccccCCC-CCCEE
Q 040255 563 ITFEIIDCKMLERLPDE---LENLEYLTVKGT-TIR--ELPESLGRLSWVKRLILSNNSNLER--IPESIRHLS-KLTFL 633 (869)
Q Consensus 563 ~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n-~i~--~lP~~i~~l~~L~~L~Ls~n~~l~~--lP~~i~~L~-~L~~L 633 (869)
++|+|++|......|.. +++|++|+|++| .++ .+|..+..+++|++|+|++|..+.. +|..+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 99999999844455554 889999999999 687 3777788999999999999955554 677789999 99999
Q ss_pred ecCCCC-CC--cccCCC---CcccceeecccCCCCc-cccCCCCCCccceEEeccCCCCCCchhhhhhhhcccccccccc
Q 040255 634 FISHCE-RL--QTLPEL---PCNLGLLSARNCTSLE-KLPAGLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYE 706 (869)
Q Consensus 634 ~L~~c~-~l--~~lp~~---~~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 706 (869)
++++|. .+ ..+|.. +++|+.|++++|..+. ..+..+.++++|+.|++++|....+..+. .+..+..++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~l~~~~~L~ 275 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-----ELGEIPTLK 275 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-----GGGGCTTCC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHH-----HHhcCCCCC
Confidence 999985 23 445543 6799999999997544 56667888999999999987644333221 223355666
Q ss_pred ccCCcee
Q 040255 707 ERGIKKS 713 (869)
Q Consensus 707 ~~~~~~~ 713 (869)
.+++..+
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 6655543
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.3e-10 Score=129.60 Aligned_cols=220 Identities=17% Similarity=0.123 Sum_probs=148.1
Q ss_pred CcceeccccHHHHHHhhcc--CCCCeEEEEEEecCCchHHHHHHHHHHhhcCc------c--CceEEEEeehhhhccC-C
Q 040255 151 KGLVGVECSIEEIESLLCI--GSEGVCKLRIWGIGGISKITIAGAVFNKISRH------F--EGSYFALNVREAEETG-G 219 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F--~~~~~~~~~~~~s~~~-~ 219 (869)
+.++||+.+++++..++.. .....+.|.|+|++|+||||||+++++.+... + ...+|+. ..... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCCC
Confidence 6799999999999988754 23445689999999999999999999976443 2 2334444 22233 5
Q ss_pred HHHHHHHHHHHhhcCCCCC---C----HHHHHHHHccCceEEEecCCC-------------------CCcEEEEEeCchh
Q 040255 220 IKDLQKKLLSELSKDGNMR---N----IESQLNRLARKKVRIVFDDVT-------------------SGSRVIITTRDKQ 273 (869)
Q Consensus 220 ~~~l~~~il~~l~~~~~~~---~----~~~l~~~L~~kr~LlVLDDv~-------------------~gsrIivTTR~~~ 273 (869)
...+..+++..+.+..... . ...+.+.+..++.+|||||++ .+.++|+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 6677777777774322211 1 455566677766699999997 2567888998753
Q ss_pred hhhhc------CCCeEEEeCCCCHHHHHHHHHHhh---cCCCCCCccHHHHHHHHHHHcC---CCch-hHHHHHhhh--c
Q 040255 274 VLKNC------WANKKYRMKELVYADAHKLFCQWA---FGGDHLDASHIELTDKAIKYAQ---GVPL-ALKVLGCYL--C 338 (869)
Q Consensus 274 v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~g~~L--~ 338 (869)
..... .....+++++++.++..+++...+ |......+ +..+.++++++ |.|. |+..+-... .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 21111 112389999999999999999874 32222222 45567777777 8887 444433322 1
Q ss_pred ----CCCHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhccc
Q 040255 339 ----GRSKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIAC 384 (869)
Q Consensus 339 ----~~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a~ 384 (869)
.-+.+.++.++..... ..+.-+++.|++++|..+..++.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHT
T ss_pred cCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHH
Confidence 2367777777776532 45667788999999988887876
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=2.8e-12 Score=141.96 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=132.3
Q ss_pred eEEecCCCCCCcc-ccccccceeeecCCCcccccccccccCCCccC-CCCCccEEEecCCCCCcccCcc----ccccchh
Q 040255 513 RHLEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLC-TFKTPITFEIIDCKMLERLPDE----LENLEYL 586 (869)
Q Consensus 513 ~~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L 586 (869)
+.++.+++.++.+ ..-+..++.|+|++|+++.+. +..+. ++++|+.|+|++|. +..+|.. +++|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~------~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLR------AEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEEC------TTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccC------hhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEE
Confidence 5688888888888 444567999999999998543 23455 89999999999998 7777754 8899999
Q ss_pred cccccccccCCC-CcCCccccceeccccccccccc-CccccCCCCCCEEecCCCCCCcccCCC-------Ccccceeecc
Q 040255 587 TVKGTTIRELPE-SLGRLSWVKRLILSNNSNLERI-PESIRHLSKLTFLFISHCERLQTLPEL-------PCNLGLLSAR 657 (869)
Q Consensus 587 ~L~~n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~lp~~-------~~~L~~L~l~ 657 (869)
+|++|.|+.+|. .+..+++|+.|+|++| .+..+ |..+..+++|+.|+|++| .+..+|.. +++|+.|+++
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECC
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECC
Confidence 999999998865 6889999999999999 77777 567999999999999985 56677753 5789999999
Q ss_pred cCCCCccccC-CCCCCcc--ceEEeccCCCCCCch
Q 040255 658 NCTSLEKLPA-GLSSMSS--VLYVNLCNFLKLDPN 689 (869)
Q Consensus 658 ~c~~l~~lp~-~~~~l~~--L~~l~l~~~~~~~~~ 689 (869)
++ .+..+|. .+..++. |+.+++++|+-....
T Consensus 172 ~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 172 SN-KLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp SS-CCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred CC-CCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 84 6777774 4555655 467888887655433
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=1.3e-13 Score=152.80 Aligned_cols=231 Identities=16% Similarity=0.060 Sum_probs=159.3
Q ss_pred ccccccCCcceEEEEcCCCCcccc-----CcCCCCCCCCeeEEecCCCCCCcc----cccc-----ccceeeecCCCccc
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKCMV-----SHLEGVPFAEVRHLEWPQCPLKTL----NICA-----EKLVSLKMPCTKVE 543 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~~~-----~~l~~l~~~~L~~L~l~~~~l~~l----~~~~-----~~L~~L~L~~n~l~ 543 (869)
+..+...++|+.|++++|.....+ ..+..++ .+|+.|++++|.+... ...+ .+|++|+|++|.++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTP-ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCC-TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCC-CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 444555666999999998766554 3455555 4899999999998775 2232 89999999999987
Q ss_pred ccccccccCCCccCCC-CCccEEEecCCCCCcccCcc---------ccccchhcccccccc-----cCCCCcCCcc-ccc
Q 040255 544 QLWDDVQRLPSSLCTF-KTPITFEIIDCKMLERLPDE---------LENLEYLTVKGTTIR-----ELPESLGRLS-WVK 607 (869)
Q Consensus 544 ~l~~~~~~lp~~~~~l-~~L~~L~L~~~~~l~~lp~~---------l~~L~~L~L~~n~i~-----~lP~~i~~l~-~L~ 607 (869)
.... ..+...+..+ ++|++|+|++|. ++..+.. .++|++|+|++|.++ .++..+..++ +|+
T Consensus 94 ~~~~--~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 94 YKSS--DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GSCH--HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred hHHH--HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 4321 1122224445 799999999998 6666653 158999999999998 3444555565 999
Q ss_pred eecccccccccccCc-----cccCC-CCCCEEecCCCCCCcc-----cCCC----CcccceeecccCCCCccc-----cC
Q 040255 608 RLILSNNSNLERIPE-----SIRHL-SKLTFLFISHCERLQT-----LPEL----PCNLGLLSARNCTSLEKL-----PA 667 (869)
Q Consensus 608 ~L~Ls~n~~l~~lP~-----~i~~L-~~L~~L~L~~c~~l~~-----lp~~----~~~L~~L~l~~c~~l~~l-----p~ 667 (869)
+|+|++| .++..+. .+..+ ++|+.|+|++|. ++. +|.. +++|+.|++++|. ++.. ..
T Consensus 171 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 247 (362)
T 3goz_A 171 SLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKL 247 (362)
T ss_dssp EEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred EeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHH
Confidence 9999999 6765543 34555 599999999976 444 4443 4589999999974 4332 33
Q ss_pred CCCCCccceEEeccCCC-CCCchhhhhhhhccccccccccccCCceeee
Q 040255 668 GLSSMSSVLYVNLCNFL-KLDPNELSEIVKDGWMKHSLYEERGIKKSMY 715 (869)
Q Consensus 668 ~~~~l~~L~~l~l~~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 715 (869)
.+..+++|+.|++++|. .......-......+...+.+..+++..|.+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 55778899999998853 1111111122333445566777788877776
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=4.9e-14 Score=164.93 Aligned_cols=187 Identities=20% Similarity=0.164 Sum_probs=135.0
Q ss_pred ccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCC-------------CCcc----ccccccceeee-cCCCccc
Q 040255 482 SKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCP-------------LKTL----NICAEKLVSLK-MPCTKVE 543 (869)
Q Consensus 482 ~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~-------------l~~l----~~~~~~L~~L~-L~~n~l~ 543 (869)
...++|+.|++++|....+|..++.++ +|+.|++++|. .... ...+.+|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~--~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCK--ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHH--HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHH--HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 567888888888877778888887776 78888876653 1111 34566777777 5655544
Q ss_pred cccc------ccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccc
Q 040255 544 QLWD------DVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNS 615 (869)
Q Consensus 544 ~l~~------~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~ 615 (869)
.+.. .+..+|. ..|+.|+|++|. +..+|.. +++|+.|+|++|.|+.+|..++.+++|+.|+|++|
T Consensus 424 ~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N- 496 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY-----ADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN- 496 (567)
T ss_dssp HHHHHHHHHHHHHHHHH-----TTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-
T ss_pred hhhhhhhhcccccccCc-----cCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-
Confidence 3321 1222221 258889999987 7778876 78899999999999999999999999999999999
Q ss_pred cccccCccccCCCCCCEEecCCCCCCccc--CCC---CcccceeecccCCCCccccCCCC----CCccceEEec
Q 040255 616 NLERIPESIRHLSKLTFLFISHCERLQTL--PEL---PCNLGLLSARNCTSLEKLPAGLS----SMSSVLYVNL 680 (869)
Q Consensus 616 ~l~~lP~~i~~L~~L~~L~L~~c~~l~~l--p~~---~~~L~~L~l~~c~~l~~lp~~~~----~l~~L~~l~l 680 (869)
.+..+| .++.|++|+.|+|++|+ +..+ |.. +++|+.|++++| .+..+|.... .+++|+.||+
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 788888 88999999999999865 4444 654 577888888885 4666665433 3577777763
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=1.2e-11 Score=126.54 Aligned_cols=124 Identities=19% Similarity=0.304 Sum_probs=67.6
Q ss_pred CCccEEEecCCCCCcccCcc----ccccchhcccccccccC-CCCcCCccccceecccccccccccCcc-ccCCCCCCEE
Q 040255 560 KTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFL 633 (869)
Q Consensus 560 ~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L 633 (869)
++|+.|+|++|. +..+|.. +++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|.. +..+++|+.|
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEE
Confidence 345555555554 4444432 45555555555555544 455556666666666666 55555544 3556666666
Q ss_pred ecCCCCCCcccCCC---CcccceeecccCCCCccccC-CCCCCccceEEeccCCCCC
Q 040255 634 FISHCERLQTLPEL---PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLKL 686 (869)
Q Consensus 634 ~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~~ 686 (869)
+|++|......|.. +++|+.|+++++ .+..++. .+..+++|+.+++++|+-.
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66654332222222 345556666553 3444443 4667777888888775533
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=1.4e-11 Score=126.11 Aligned_cols=142 Identities=16% Similarity=0.250 Sum_probs=90.5
Q ss_pred eeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccC-cc----ccccchhcccccccccCCC-CcCCcccc
Q 040255 533 VSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLP-DE----LENLEYLTVKGTTIRELPE-SLGRLSWV 606 (869)
Q Consensus 533 ~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp-~~----l~~L~~L~L~~n~i~~lP~-~i~~l~~L 606 (869)
+.+++++|.++. +|..+. ..++.|+|++|. +..++ .. +++|++|+|++|.|+.+|. .++.+++|
T Consensus 14 ~~l~~s~n~l~~-------iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNK-------IPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSS-------CCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEeEeCCCCccc-------CccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 356666666553 333222 245677777776 55553 21 6677777777777776644 67777777
Q ss_pred ceecccccccccccCcc-ccCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCccc-cCCCCCCccceEEecc
Q 040255 607 KRLILSNNSNLERIPES-IRHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEKL-PAGLSSMSSVLYVNLC 681 (869)
Q Consensus 607 ~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~l~l~ 681 (869)
++|+|++| .+..+|.. +..+++|++|+|++|......|.. +++|+.|++++| .+..+ |..+..+++|+.++++
T Consensus 84 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 84 NEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEec
Confidence 77777777 66666554 677777777777775544333433 456777777774 34444 6678888889999988
Q ss_pred CCCCC
Q 040255 682 NFLKL 686 (869)
Q Consensus 682 ~~~~~ 686 (869)
+|+-.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 85433
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.29 E-value=1.9e-10 Score=128.09 Aligned_cols=290 Identities=15% Similarity=0.152 Sum_probs=172.9
Q ss_pred CCcceeccccHHHHHHhhccC--CCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-----C-ceEEEEeehhhhccCCHH
Q 040255 150 NKGLVGVECSIEEIESLLCIG--SEGVCKLRIWGIGGISKITIAGAVFNKISRHF-----E-GSYFALNVREAEETGGIK 221 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~-~~~~~~~~~~~s~~~~~~ 221 (869)
++.++||+.+++++..++... ....+.+.|+|++|+||||||+++++.....+ . ..+|+. .....+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~ 93 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETPY 93 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCHH
Confidence 477999999999999988542 34566889999999999999999999764432 1 233443 23334566
Q ss_pred HHHHHHHHHhhcCCCCC--C----HHHHHHHH--ccCceEEEecCCC-------------------C----C--cEEEEE
Q 040255 222 DLQKKLLSELSKDGNMR--N----IESQLNRL--ARKKVRIVFDDVT-------------------S----G--SRVIIT 268 (869)
Q Consensus 222 ~l~~~il~~l~~~~~~~--~----~~~l~~~L--~~kr~LlVLDDv~-------------------~----g--srIivT 268 (869)
.+...++..++...... . ...+.+.+ .+++.+|||||++ . + ..+|.|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 77777887776432222 1 33444455 3468899999997 1 2 356778
Q ss_pred eCchhh--------hhhcCCCeEEEeCCCCHHHHHHHHHHhh---cCCCCCCccHHHHHHHHHHHcC---CCch-hHHHH
Q 040255 269 TRDKQV--------LKNCWANKKYRMKELVYADAHKLFCQWA---FGGDHLDASHIELTDKAIKYAQ---GVPL-ALKVL 333 (869)
Q Consensus 269 TR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~ 333 (869)
|+.... ...+ ....+.+++++.++..+++...+ +......+ +..+.++++++ |.|. ++.++
T Consensus 174 t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 876532 2222 12578999999999999998874 33222222 34567777777 9994 33333
Q ss_pred Hhhhc-----C---CCHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhcccccCCCC---HHHHHHHHhh--
Q 040255 334 GCYLC-----G---RSKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIACFLEGEH---RDEVISIFDA-- 400 (869)
Q Consensus 334 g~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a~F~~~~~---~~~l~~~~~~-- 400 (869)
..... + -+.+.++.++.... ...+.-++..|+++++..++.++....+.. ...+.+....
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 22221 2 25677777766542 235666788999999998888885544432 3333222211
Q ss_pred -cCcceEeccCCeEEecHHHHHHhHhhhhccccCCCC------CcceecchhhHHHHHhhcCCc
Q 040255 401 -SKSLINLDLFYRIRMHDLLRDMGREIVRKESINHPG------KRNRLWHHKDIYQVLKKNTGT 457 (869)
Q Consensus 401 -~~sLi~~~~~~~~~mHdll~~~~~~i~~~e~~~~~~------~~~~l~~~~~~~~vl~~~~~~ 457 (869)
..+. .....-.+.+.++.+...-.-+......| +.+..|+++++..++......
T Consensus 323 ~~~~~---~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~i~~~l~~~~~~ 383 (387)
T 2v1u_A 323 STLGL---EHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKTREVSLDADRLAVENALSEDPFV 383 (387)
T ss_dssp HHTTC---CCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEEEEEEECSCHHHHHHHHHHSTTG
T ss_pred HhcCC---CCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCceeEEEecCCHHHHHHHHhccHhh
Confidence 1110 11112234455555443311111001111 233678889999988866543
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=6.5e-11 Score=131.76 Aligned_cols=227 Identities=15% Similarity=0.100 Sum_probs=145.2
Q ss_pred cCCcceeccccHHHHHHhhccC--CCCeEEEEEEecCCchHHHHHHHHHHhhcCccC---ceEEEEeehhhhccCCHHHH
Q 040255 149 KNKGLVGVECSIEEIESLLCIG--SEGVCKLRIWGIGGISKITIAGAVFNKISRHFE---GSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~~~l 223 (869)
.++.++||+.+++++.+++... ....+.+.|+|++|+||||||+++++.+...+. ..+|+. .........+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHH
Confidence 3477999999999999988642 344568999999999999999999998765542 344444 2223345566
Q ss_pred HHHHHHHhhcCCCCC--C----HHHHHHHHc--cCceEEEecCCC-----------------------CCcEEEEEeCch
Q 040255 224 QKKLLSELSKDGNMR--N----IESQLNRLA--RKKVRIVFDDVT-----------------------SGSRVIITTRDK 272 (869)
Q Consensus 224 ~~~il~~l~~~~~~~--~----~~~l~~~L~--~kr~LlVLDDv~-----------------------~gsrIivTTR~~ 272 (869)
...++..++...... . .+.+.+.+. +++.+||||+++ .+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 666666554321111 1 333444443 458999999996 134568888876
Q ss_pred hhhhhcC-------CCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcC---CCchhHHHH-Hhhhc---
Q 040255 273 QVLKNCW-------ANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQ---GVPLALKVL-GCYLC--- 338 (869)
Q Consensus 273 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~---GlPLal~~~-g~~L~--- 338 (869)
....... ....+.+++++.++..+++...+-.......-..+..+.+++.++ |.|..+..+ .....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4432221 125899999999999999987642111111122455667777777 999844333 22211
Q ss_pred --C---CCHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhccccc
Q 040255 339 --G---RSKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIACFL 386 (869)
Q Consensus 339 --~---~~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a~F~ 386 (869)
+ -+.+..+.++.... ...+.-++..|+...+..+..++...
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~ 299 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSIS 299 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 25566666665543 23566778889999999888888643
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=7.5e-13 Score=159.71 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=106.9
Q ss_pred cCcCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccC
Q 040255 501 VSHLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLP 577 (869)
Q Consensus 501 ~~~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp 577 (869)
+..+..+. .|+.|++++|.+..+ .+.+.+|++|+|++|.|+ .+|..+++|++|++|+|++|. +..+|
T Consensus 217 ~~~~~~l~--~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~l~~L~~L~Ls~N~-l~~lp 286 (727)
T 4b8c_D 217 KDSKYDDQ--LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-------ELPAEIKNLSNLRVLDLSHNR-LTSLP 286 (727)
T ss_dssp -----CCC--CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-------CCCGGGGGGTTCCEEECTTSC-CSSCC
T ss_pred hhhhccCC--CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-------ccChhhhCCCCCCEEeCcCCc-CCccC
Confidence 34455554 888888888888777 667889999999999886 467778899999999999998 77898
Q ss_pred cc---ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCCC-CCEEecCCCCCCcccCCCCcccce
Q 040255 578 DE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLSK-LTFLFISHCERLQTLPELPCNLGL 653 (869)
Q Consensus 578 ~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~~-L~~L~L~~c~~l~~lp~~~~~L~~ 653 (869)
.. +++|++|+|++|.|+.+|.+|++|++|++|+|++|...+.+|..+..+.. +..|+|++|...+.+|. .|..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~ 363 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRF 363 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccce
Confidence 86 88999999999999999999999999999999999444466666654422 22467888777776665 4555
Q ss_pred eecccC
Q 040255 654 LSARNC 659 (869)
Q Consensus 654 L~l~~c 659 (869)
|++..+
T Consensus 364 l~l~~n 369 (727)
T 4b8c_D 364 IEINTD 369 (727)
T ss_dssp ------
T ss_pred eEeecc
Confidence 555554
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=8.1e-12 Score=121.98 Aligned_cols=126 Identities=23% Similarity=0.299 Sum_probs=86.0
Q ss_pred CeeEEecCCCCCC--cc---ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccc
Q 040255 511 EVRHLEWPQCPLK--TL---NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LEN 582 (869)
Q Consensus 511 ~L~~L~l~~~~l~--~l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~ 582 (869)
+|+.|++++|.+. .+ ...+.+|+.|++++|.++.+ ..+..+++|++|+|++|.....+|.. +++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 4444444444443 22 23455677777777776532 35667788888888888733335554 778
Q ss_pred cchhcccccccccCC--CCcCCccccceecccccccccccCc----cccCCCCCCEEecCCCCCCcccCC
Q 040255 583 LEYLTVKGTTIRELP--ESLGRLSWVKRLILSNNSNLERIPE----SIRHLSKLTFLFISHCERLQTLPE 646 (869)
Q Consensus 583 L~~L~L~~n~i~~lP--~~i~~l~~L~~L~Ls~n~~l~~lP~----~i~~L~~L~~L~L~~c~~l~~lp~ 646 (869)
|++|+|++|.++.+| ..++.+++|+.|+|++| .+..+|. .+..+++|++|++++|. ...+|.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 888888888888776 67788888888888888 7777776 67788888888888754 445554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1.2e-11 Score=121.89 Aligned_cols=99 Identities=14% Similarity=0.240 Sum_probs=73.8
Q ss_pred cceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCC--CcCCcc
Q 040255 531 KLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPE--SLGRLS 604 (869)
Q Consensus 531 ~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~--~i~~l~ 604 (869)
+|+.|++++|.++.+ ..+.++++|++|+|++|. +..+|+. +++|++|+|++|.++.+|. .++.++
T Consensus 43 ~L~~L~Ls~N~l~~~--------~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--------DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113 (176)
T ss_dssp CCSEEECCSSCCCEE--------CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCT
T ss_pred CCCEEECCCCCCCcc--------cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCC
Confidence 666777777766632 256677788888888887 6677653 6788888888888887776 777888
Q ss_pred ccceecccccccccccCcc----ccCCCCCCEEecCCCC
Q 040255 605 WVKRLILSNNSNLERIPES----IRHLSKLTFLFISHCE 639 (869)
Q Consensus 605 ~L~~L~Ls~n~~l~~lP~~----i~~L~~L~~L~L~~c~ 639 (869)
+|+.|++++| .+..+|.. +..+++|+.|++++|.
T Consensus 114 ~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 114 SLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8888888888 77777764 7788888888887754
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=8.5e-12 Score=121.83 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=107.5
Q ss_pred cCCcceEEEEcCCCCc--cccCcCCCCCCCCeeEEecCCCCCCcc--ccccccceeeecCCCcccccccccccCCCccCC
Q 040255 483 KMPKLRFLRFYGDKNK--CMVSHLEGVPFAEVRHLEWPQCPLKTL--NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCT 558 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~~~--~~~~~l~~l~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~ 558 (869)
..++|+.|++++|... .+|..+..++ +|++|++++|.+..+ ...+.+|+.|++++|.++. .+|..+.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~--~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFV--NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG------GLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGG--GCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCS------CCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCC--CCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCch------HHHHHHhh
Confidence 3477888888887655 6776666665 888888888888776 5567889999999998873 25556667
Q ss_pred CCCccEEEecCCCCCcccCc--c---ccccchhcccccccccCCC----CcCCccccceecccccccccccCccc
Q 040255 559 FKTPITFEIIDCKMLERLPD--E---LENLEYLTVKGTTIRELPE----SLGRLSWVKRLILSNNSNLERIPESI 624 (869)
Q Consensus 559 l~~L~~L~L~~~~~l~~lp~--~---l~~L~~L~L~~n~i~~lP~----~i~~l~~L~~L~Ls~n~~l~~lP~~i 624 (869)
+++|++|+|++|. +..+|. . +++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.+.
T Consensus 94 l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~ 166 (168)
T 2ell_A 94 LPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDSD 166 (168)
T ss_dssp CTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSSS
T ss_pred CCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccccc
Confidence 8999999999997 777763 2 8899999999999999987 7899999999999999 888888653
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.21 E-value=7.7e-13 Score=151.35 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=158.0
Q ss_pred ccccccCCcceEEEEcCCCCccc-----cCcCCCCCCCCeeEEecCCCCCCcc--------ccccccceeeecCCCcccc
Q 040255 478 SYAFSKMPKLRFLRFYGDKNKCM-----VSHLEGVPFAEVRHLEWPQCPLKTL--------NICAEKLVSLKMPCTKVEQ 544 (869)
Q Consensus 478 ~~~f~~l~~Lr~L~l~~~~~~~~-----~~~l~~l~~~~L~~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~ 544 (869)
+..|.++++|+.|++++|..... ...+.... .+|+.|++++|.+... ...+++|++|++++|.+..
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ-CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC-CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 66788999999999988764321 11222211 4799999999988763 2345789999999998763
Q ss_pred cccccccCCCccC-CCCCccEEEecCCCCCcc-----cCcc---ccccchhcccccccccC------CCCcCCcccccee
Q 040255 545 LWDDVQRLPSSLC-TFKTPITFEIIDCKMLER-----LPDE---LENLEYLTVKGTTIREL------PESLGRLSWVKRL 609 (869)
Q Consensus 545 l~~~~~~lp~~~~-~l~~L~~L~L~~~~~l~~-----lp~~---l~~L~~L~L~~n~i~~l------P~~i~~l~~L~~L 609 (869)
. +...+...+. .+++|+.|+|++|. +.. +|.. +++|++|+|++|.++.. +..+..+++|++|
T Consensus 185 ~--~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 185 A--GVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp H--HHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred H--HHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 2 1111221221 35689999999997 554 4444 78899999999988742 2233468899999
Q ss_pred cccccccccc-----cCccccCCCCCCEEecCCCCCCcc----cC----CCCcccceeecccCCCCc----cccCCCCCC
Q 040255 610 ILSNNSNLER-----IPESIRHLSKLTFLFISHCERLQT----LP----ELPCNLGLLSARNCTSLE----KLPAGLSSM 672 (869)
Q Consensus 610 ~Ls~n~~l~~-----lP~~i~~L~~L~~L~L~~c~~l~~----lp----~~~~~L~~L~l~~c~~l~----~lp~~~~~l 672 (869)
+|++| .++. +|..+..+++|++|+|++|..... ++ ...++|+.|++.+|..-. .++..+.++
T Consensus 262 ~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 262 WIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred ECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 99999 7776 788888899999999999754221 22 123689999999986432 255566677
Q ss_pred ccceEEeccCCCCCCchhhhhhhhcccc-ccccccccCCceeeecCCC----CCCcccccCC
Q 040255 673 SSVLYVNLCNFLKLDPNELSEIVKDGWM-KHSLYEERGIKKSMYFPGN----EIPKWFRHQS 729 (869)
Q Consensus 673 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~pg~----~iP~w~~~~~ 729 (869)
++|+.|++++|.-.. .....+ ..... ....++.+++..|.+ +. .+|.++..-.
T Consensus 341 ~~L~~L~Ls~n~i~~-~~~~~l-~~~l~~~~~~L~~L~L~~n~i--~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 341 RFLLELQISNNRLED-AGVREL-CQGLGQPGSVLRVLWLADCDV--SDSSCSSLAATLLANH 398 (461)
T ss_dssp SSCCEEECCSSBCHH-HHHHHH-HHHHTSTTCCCCEEECTTSCC--CHHHHHHHHHHHHHCC
T ss_pred CCccEEEccCCcccc-ccHHHH-HHHHcCCCCceEEEECCCCCC--ChhhHHHHHHHHHhCC
Confidence 899999998853111 001111 11111 134566666666655 32 5676665443
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.3e-11 Score=117.86 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=61.5
Q ss_pred ccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCC--CCcCCcc
Q 040255 530 EKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELP--ESLGRLS 604 (869)
Q Consensus 530 ~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP--~~i~~l~ 604 (869)
.+|+.|++++|.++.+ ..+.++++|++|+|++|.....+|.. +++|++|++++|.++.+| ..++.++
T Consensus 42 ~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~ 113 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE 113 (149)
T ss_dssp TTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred CCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence 3445555555555422 24556667777777777633325554 667777777777777654 6677777
Q ss_pred ccceecccccccccccCc----cccCCCCCCEEecC
Q 040255 605 WVKRLILSNNSNLERIPE----SIRHLSKLTFLFIS 636 (869)
Q Consensus 605 ~L~~L~Ls~n~~l~~lP~----~i~~L~~L~~L~L~ 636 (869)
+|++|++++| .+..+|. .++.+++|+.|+++
T Consensus 114 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 114 NLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 7777777777 6666665 46677777777665
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=5.9e-11 Score=118.78 Aligned_cols=100 Identities=20% Similarity=0.367 Sum_probs=62.4
Q ss_pred cceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCC-CcCCccc
Q 040255 531 KLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPE-SLGRLSW 605 (869)
Q Consensus 531 ~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~-~i~~l~~ 605 (869)
+|++|+|++|.++ .+|..+.++++|+.|+|++|. +..+|.. +++|++|+|++|.|+.+|+ .+..+++
T Consensus 32 ~l~~L~L~~n~i~-------~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 32 DVTELYLDGNQFT-------LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS 103 (193)
T ss_dssp TCCEEECCSSCCC-------SCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred CCCEEECCCCcCc-------hhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCC
Confidence 4555555555554 334456666677777777666 5555543 5666677777777766543 5666777
Q ss_pred cceecccccccccccCcc-ccCCCCCCEEecCCCC
Q 040255 606 VKRLILSNNSNLERIPES-IRHLSKLTFLFISHCE 639 (869)
Q Consensus 606 L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~ 639 (869)
|++|+|++| .+..+|.. +..+++|+.|+|++|+
T Consensus 104 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 104 LRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 777777777 66666654 5666777777776654
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=1.7e-12 Score=148.51 Aligned_cols=199 Identities=19% Similarity=0.170 Sum_probs=108.3
Q ss_pred cccccCCcceEEEEcCCCCccc-c----CcCCCCCCCCeeEEecCCCCCCc-----c---ccccccceeeecCCCccccc
Q 040255 479 YAFSKMPKLRFLRFYGDKNKCM-V----SHLEGVPFAEVRHLEWPQCPLKT-----L---NICAEKLVSLKMPCTKVEQL 545 (869)
Q Consensus 479 ~~f~~l~~Lr~L~l~~~~~~~~-~----~~l~~l~~~~L~~L~l~~~~l~~-----l---~~~~~~L~~L~L~~n~l~~l 545 (869)
..+..+++|+.|++++|..... + ..+.... .+|++|++++|.+.. + ...+++|++|++++|.++..
T Consensus 50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS-CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT-CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC-CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 3455566666666666443221 1 1111111 146666666666653 1 33455666666666665421
Q ss_pred ccccccCCCc-cCCCCCccEEEecCCCCCcc-----cCcc---ccccchhcccccccccC-CCCcC-----Cccccceec
Q 040255 546 WDDVQRLPSS-LCTFKTPITFEIIDCKMLER-----LPDE---LENLEYLTVKGTTIREL-PESLG-----RLSWVKRLI 610 (869)
Q Consensus 546 ~~~~~~lp~~-~~~l~~L~~L~L~~~~~l~~-----lp~~---l~~L~~L~L~~n~i~~l-P~~i~-----~l~~L~~L~ 610 (869)
+...+... ....++|++|+|++|. +.. ++.. +++|++|++++|.++.. +..+. .+++|++|+
T Consensus 129 --~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 129 --GLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp --HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred --HHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 11111111 1224466777777665 332 1222 46677777777766532 22222 245777777
Q ss_pred ccccccccc-----cCccccCCCCCCEEecCCCCCCcc----c-C---CCCcccceeecccCCCCcc-----ccCCCCCC
Q 040255 611 LSNNSNLER-----IPESIRHLSKLTFLFISHCERLQT----L-P---ELPCNLGLLSARNCTSLEK-----LPAGLSSM 672 (869)
Q Consensus 611 Ls~n~~l~~-----lP~~i~~L~~L~~L~L~~c~~l~~----l-p---~~~~~L~~L~l~~c~~l~~-----lp~~~~~l 672 (869)
|++| .++. +|..+..+++|++|++++|..... + + ...++|+.|++++| .++. ++..+.++
T Consensus 206 L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 206 LESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAK 283 (461)
T ss_dssp CTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHC
T ss_pred ccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhC
Confidence 7777 5554 566677777888888887642211 1 1 12467788888776 4443 56666667
Q ss_pred ccceEEeccCC
Q 040255 673 SSVLYVNLCNF 683 (869)
Q Consensus 673 ~~L~~l~l~~~ 683 (869)
++|+.|++++|
T Consensus 284 ~~L~~L~Ls~n 294 (461)
T 1z7x_W 284 ESLKELSLAGN 294 (461)
T ss_dssp TTCCEEECTTC
T ss_pred CCcceEECCCC
Confidence 77888887774
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=2.9e-11 Score=115.43 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=87.3
Q ss_pred cccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc--ccccchhccccccccc-CCCCcCCccc
Q 040255 529 AEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRE-LPESLGRLSW 605 (869)
Q Consensus 529 ~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~-lP~~i~~l~~ 605 (869)
+.+|+.|++++|.++. +.+|..+..+++|+.|++++|. +..++.. +++|++|+|++|.++. +|..++.+++
T Consensus 16 ~~~l~~L~l~~n~l~~-----~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-----GKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBT-----TBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CccCeEEEccCCcCCh-----hHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 4567777777777651 2456677888899999999886 6665433 7888888888888886 6777777888
Q ss_pred cceecccccccccccC--ccccCCCCCCEEecCCCCCCcccCC----C---Ccccceeecc
Q 040255 606 VKRLILSNNSNLERIP--ESIRHLSKLTFLFISHCERLQTLPE----L---PCNLGLLSAR 657 (869)
Q Consensus 606 L~~L~Ls~n~~l~~lP--~~i~~L~~L~~L~L~~c~~l~~lp~----~---~~~L~~L~l~ 657 (869)
|++|++++| .+..+| ..++.+++|++|++++|+ +..+|. . +++|+.|+++
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 888888888 677765 678888888888888864 455554 1 3455555543
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=1.2e-10 Score=116.33 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=58.5
Q ss_pred cEEEecCCCCCcccCcc-ccccchhcccccccccCCCC--cCCccccceeccccccccccc-CccccCCCCCCEEecCCC
Q 040255 563 ITFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELPES--LGRLSWVKRLILSNNSNLERI-PESIRHLSKLTFLFISHC 638 (869)
Q Consensus 563 ~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP~~--i~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c 638 (869)
++++++++. ++.+|.. ..+|++|+|++|.++.+|.. ++.+++|++|+|++| .+..+ |..+..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 344444443 4444443 33455555555555544432 445555555555555 33333 334555555555555543
Q ss_pred CCCcccCCC---CcccceeecccCCCCccccCCCCCCccceEEeccCCCCC
Q 040255 639 ERLQTLPEL---PCNLGLLSARNCTSLEKLPAGLSSMSSVLYVNLCNFLKL 686 (869)
Q Consensus 639 ~~l~~lp~~---~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~l~l~~~~~~ 686 (869)
+..+..|.. +++|+.|+++++...+..|..+..+++|+.+++++|+-.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 322222221 344555555554323333556666777777777775433
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=1.5e-10 Score=114.03 Aligned_cols=104 Identities=19% Similarity=0.380 Sum_probs=65.3
Q ss_pred ccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCcc
Q 040255 530 EKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLS 604 (869)
Q Consensus 530 ~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~ 604 (869)
.+|+.|++++|+++.+ .+..+.++++|++|+|++|. +..+|.. +++|++|+|++|.++.+|.. ++.++
T Consensus 28 ~~l~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQSL------PHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCcccEe------CHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 4555666666655421 12235566777777777775 5555543 56677777777777766554 46677
Q ss_pred ccceecccccccccccCcc-ccCCCCCCEEecCCCCCC
Q 040255 605 WVKRLILSNNSNLERIPES-IRHLSKLTFLFISHCERL 641 (869)
Q Consensus 605 ~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l 641 (869)
+|++|+|++| .+..+|.. +..+++|++|+|++|+..
T Consensus 101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 7777777777 66666665 466777777777776543
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=7.2e-11 Score=116.22 Aligned_cols=75 Identities=28% Similarity=0.377 Sum_probs=36.3
Q ss_pred CccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCc-CCccccceecccccccccccCc--cccCCCCCCEEec
Q 040255 561 TPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESL-GRLSWVKRLILSNNSNLERIPE--SIRHLSKLTFLFI 635 (869)
Q Consensus 561 ~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i-~~l~~L~~L~Ls~n~~l~~lP~--~i~~L~~L~~L~L 635 (869)
+|++|+|++|. +..++.. +++|++|+|++|.|+.+|+.+ +.+++|++|+|++| .++.+|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEe
Confidence 55555555554 3333222 444555555555555444433 44555555555555 4444444 4444555555555
Q ss_pred CC
Q 040255 636 SH 637 (869)
Q Consensus 636 ~~ 637 (869)
++
T Consensus 121 ~~ 122 (176)
T 1a9n_A 121 LR 122 (176)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=2e-10 Score=114.74 Aligned_cols=83 Identities=22% Similarity=0.335 Sum_probs=49.5
Q ss_pred cCCCCCccEEEecCCCCCccc-Ccc---ccccchhcccccccccCCC-CcCCccccceeccccccccccc-CccccCCCC
Q 040255 556 LCTFKTPITFEIIDCKMLERL-PDE---LENLEYLTVKGTTIRELPE-SLGRLSWVKRLILSNNSNLERI-PESIRHLSK 629 (869)
Q Consensus 556 ~~~l~~L~~L~L~~~~~l~~l-p~~---l~~L~~L~L~~n~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~l-P~~i~~L~~ 629 (869)
+.++++|++|+|++|. +..+ |.. +++|++|+|++|.|+.+|. .++.+++|++|+|++| .+..+ |..+..+++
T Consensus 50 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNS 127 (192)
T ss_dssp GGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTT
T ss_pred cccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCC
Confidence 5556666666666665 3333 332 5566666666666665533 3666666777777666 44433 555666666
Q ss_pred CCEEecCCCCC
Q 040255 630 LTFLFISHCER 640 (869)
Q Consensus 630 L~~L~L~~c~~ 640 (869)
|++|+|++|+.
T Consensus 128 L~~L~L~~N~l 138 (192)
T 1w8a_A 128 LTSLNLASNPF 138 (192)
T ss_dssp CCEEECTTCCB
T ss_pred CCEEEeCCCCc
Confidence 66666666543
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.11 E-value=1.1e-09 Score=112.92 Aligned_cols=173 Identities=14% Similarity=0.064 Sum_probs=110.2
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceE-------------------EE
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSY-------------------FA 208 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-------------------~~ 208 (869)
.....++||+..++.+..++..+. ..+.+.|+|++|+||||||+++++.+...+.... ++
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI 98 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEE
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceE
Confidence 344679999999999999987543 2347889999999999999999997654331110 00
Q ss_pred EeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeC
Q 040255 209 LNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTR 270 (869)
Q Consensus 209 ~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR 270 (869)
... ...... .....+++..+... ...+++.+||+||++ .+.++|+||+
T Consensus 99 ~~~--~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 99 EID--AASRTK-VEDTRDLLDNVQYA-----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp EEE--TTCGGG-HHHHHHHHHSCCCS-----------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred Eec--Cccccc-HHHHHHHHHHhhhc-----------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 000 000000 01111111111100 013467899999997 4678888887
Q ss_pred chhhhh--hcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhh
Q 040255 271 DKQVLK--NCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYL 337 (869)
Q Consensus 271 ~~~v~~--~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L 337 (869)
...... .......+++++++.++..+++...+...... -..+..+.+++.++|.|..+..+...+
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 654221 11234689999999999999998877533221 124567889999999999988766543
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=2.8e-10 Score=113.78 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=63.5
Q ss_pred EEEecCCCCCcccCcc-ccccchhcccccccccCCCCcCCccccceecccccccccccCc-cccCCCCCCEEecCCCCCC
Q 040255 564 TFEIIDCKMLERLPDE-LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPE-SIRHLSKLTFLFISHCERL 641 (869)
Q Consensus 564 ~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L~L~~c~~l 641 (869)
+++++++. +..+|.. .++|++|+|++|.|+.+|..+..+++|+.|+|++| .+..+|. .+..+++|+.|+|++|. +
T Consensus 14 ~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l 90 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-L 90 (193)
T ss_dssp EEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred EEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-c
Confidence 44444444 4455544 44555555555555555555555555555555555 4444443 25555555555555533 3
Q ss_pred cccCC-C---CcccceeecccCCCCccccC-CCCCCccceEEeccCCCC
Q 040255 642 QTLPE-L---PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLK 685 (869)
Q Consensus 642 ~~lp~-~---~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~ 685 (869)
..+|. . +++|+.|+++++ .+..+|. .+..+++|+.+++++|+-
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 33332 1 345555555553 4445554 466777888888877543
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.09 E-value=2.9e-09 Score=118.59 Aligned_cols=226 Identities=13% Similarity=0.077 Sum_probs=141.6
Q ss_pred CCcceeccccHHHHHHhhcc----CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-CceEEEEeehhhhccCCHHHHH
Q 040255 150 NKGLVGVECSIEEIESLLCI----GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
++.++||+.+++++..++.. .....+.+.|+|++|+||||||+++++...... ...+++. .+.......+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHH
Confidence 36799999999999988864 222344899999999999999999999876542 2334444 23334556777
Q ss_pred HHHHHHhhcCCCCC--C----HHHHHHHHc--cCceEEEecCCC------------------C----CcEEEEEeCchhh
Q 040255 225 KKLLSELSKDGNMR--N----IESQLNRLA--RKKVRIVFDDVT------------------S----GSRVIITTRDKQV 274 (869)
Q Consensus 225 ~~il~~l~~~~~~~--~----~~~l~~~L~--~kr~LlVLDDv~------------------~----gsrIivTTR~~~v 274 (869)
..++..++...... . .+.+.+.+. +++.+|||||++ . +..||+||++...
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 77777775332211 2 233334443 568899999997 1 5567888887644
Q ss_pred hhhcC-------CCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHc---------CCCchhHHHHHhhhc
Q 040255 275 LKNCW-------ANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYA---------QGVPLALKVLGCYLC 338 (869)
Q Consensus 275 ~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~~g~~L~ 338 (869)
..... ....+.+++++.++..+++...+........-..+..+.+++.+ +|.|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 33221 12379999999999999998775320001112246678888888 788755444332211
Q ss_pred ------CC---CHHHHHHHHHHHhcCCCchhhhHHHhhhccCcHHHHHHHhhccccc
Q 040255 339 ------GR---SKEVWESAMRKLEIIPHVEIEEVLKISYDSLDDSQKNVFLDIACFL 386 (869)
Q Consensus 339 ------~~---~~~~w~~~l~~l~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a~F~ 386 (869)
+. +.+....++..... ..+.-.+..|+.+++.++..++.+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~ 301 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSL 301 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21 33344444433321 1233345678888888887777654
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=1.4e-12 Score=131.25 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=56.6
Q ss_pred cCCCccCCCCCccEEEecCCCCCcccCcc--ccccchhcccccccccCCCCcCCccccceecccccccccccCccccCCC
Q 040255 551 RLPSSLCTFKTPITFEIIDCKMLERLPDE--LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPESIRHLS 628 (869)
Q Consensus 551 ~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~ 628 (869)
.+|..+..+++|++|+|++|. +..+|.. +++|++|++++|.++.+|..++.+++|++|+|++| .+..+| .+..++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLV 115 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCC
Confidence 344455555566666666554 4445522 55566666666666666555555566666666666 555555 455556
Q ss_pred CCCEEecCCCCCCcccCC-----CCcccceeecccC
Q 040255 629 KLTFLFISHCERLQTLPE-----LPCNLGLLSARNC 659 (869)
Q Consensus 629 ~L~~L~L~~c~~l~~lp~-----~~~~L~~L~l~~c 659 (869)
+|+.|++++|+ +..+|. .+++|+.|++.+|
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 66666666533 333322 1345555555554
No 149
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.03 E-value=4.9e-09 Score=106.59 Aligned_cols=173 Identities=13% Similarity=0.013 Sum_probs=110.0
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
|.....++|++..++++.+++.... .+.+.|+|++|+|||+||+++++.+........++... .+...+...+...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 88 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVRHK 88 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHHHH
Confidence 3345679999999999999987543 23389999999999999999999764433222233211 1222233333222
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCchhhh-h-hcCCCeEEEe
Q 040255 227 LLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDKQVL-K-NCWANKKYRM 286 (869)
Q Consensus 227 il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~~v~-~-~~~~~~~~~l 286 (869)
+........ .-..++.+||+||++ .+.++|+||+..... . .......+++
T Consensus 89 ~~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 89 IKEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp HHHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred HHHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 211111000 012578899999997 567888888765321 1 1122348999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHh
Q 040255 287 KELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGC 335 (869)
Q Consensus 287 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 335 (869)
++++.++..+++...+...... -..+....+++.++|.|..+..+..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999998876432221 1235677888999999986555443
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=2.6e-11 Score=121.89 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=92.7
Q ss_pred ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccCCCCcCC
Q 040255 526 NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIRELPESLGR 602 (869)
Q Consensus 526 ~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~ 602 (869)
...+.+|++|++++|.++. +| .+.++++|++|+|++|. +..+|.. +++|++|+|++|.++.+| .++.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-------l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-------IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-------CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HhcCCCCCEEECCCCCCcc-------cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 3456788888888888763 55 77888999999999998 7788876 689999999999999988 6889
Q ss_pred ccccceecccccccccccCc--cccCCCCCCEEecCCCCCCcccCC
Q 040255 603 LSWVKRLILSNNSNLERIPE--SIRHLSKLTFLFISHCERLQTLPE 646 (869)
Q Consensus 603 l~~L~~L~Ls~n~~l~~lP~--~i~~L~~L~~L~L~~c~~l~~lp~ 646 (869)
+++|+.|+|++| .+..+|. .+..+++|++|++++|.....+|.
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999999999 8888775 689999999999999865554443
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=4.5e-09 Score=103.26 Aligned_cols=101 Identities=25% Similarity=0.454 Sum_probs=44.9
Q ss_pred cccchhcccccccccCCCC-cCCccccceecccccccccccCcc-ccCCCCCCEEecCCCCCCcccCCC----Cccccee
Q 040255 581 ENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHCERLQTLPEL----PCNLGLL 654 (869)
Q Consensus 581 ~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~~lp~~----~~~L~~L 654 (869)
++|+.|++++|.++.+|.. ++.+++|++|+|++| .+..+|.. +..+++|+.|+|++|. +..+|.. +++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEE
Confidence 3444444444444444332 244444444444444 34444432 3444444444444432 2223221 2344444
Q ss_pred ecccCCCCccccCC-CCCCccceEEeccCCC
Q 040255 655 SARNCTSLEKLPAG-LSSMSSVLYVNLCNFL 684 (869)
Q Consensus 655 ~l~~c~~l~~lp~~-~~~l~~L~~l~l~~~~ 684 (869)
+++++ .++.+|.. +.++++|+.+++++|+
T Consensus 106 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 106 ALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 44443 33444442 3556666667766643
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=2.2e-08 Score=108.41 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=107.7
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-cCc-eEEEEeehhhhccCCHHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-FEG-SYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~s~~~~~~~l~~ 225 (869)
.....++|++..++.+.+++..+. .+.+.|+|++|+||||+|+++++.+... +.. ...+. .+...+...+.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i~- 90 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVVR- 90 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHHH-
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHHH-
Confidence 344679999999999999987543 2338899999999999999999976432 221 22222 12222333222
Q ss_pred HHHHHhhcCCCCCCHHHHHHHH-ccCceEEEecCCC------------------CCcEEEEEeCchhh-hh-hcCCCeEE
Q 040255 226 KLLSELSKDGNMRNIESQLNRL-ARKKVRIVFDDVT------------------SGSRVIITTRDKQV-LK-NCWANKKY 284 (869)
Q Consensus 226 ~il~~l~~~~~~~~~~~l~~~L-~~kr~LlVLDDv~------------------~gsrIivTTR~~~v-~~-~~~~~~~~ 284 (869)
+++..+..... .+ .+++.++|+||++ .+.++|+||+...- .. .......+
T Consensus 91 ~~~~~~~~~~~---------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 91 NQIKHFAQKKL---------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp THHHHHHHBCC---------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHHHHhccc---------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 22222210000 01 3458899999997 46788888876432 11 11234589
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchh-HHHHHh
Q 040255 285 RMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLA-LKVLGC 335 (869)
Q Consensus 285 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~g~ 335 (869)
++++++.++..+++...+...... -..+....+++.++|.|.. +..+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999998876422211 1235678899999999954 444433
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=3e-09 Score=104.40 Aligned_cols=96 Identities=18% Similarity=0.365 Sum_probs=59.7
Q ss_pred eeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCccccc
Q 040255 533 VSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWVK 607 (869)
Q Consensus 533 ~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L~ 607 (869)
..+++++|.++. +|..+. ++|+.|+|++|. +..+|+. +++|++|+|++|.|+.+|.. +..+++|+
T Consensus 15 ~~l~~~~n~l~~-------iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 15 TLVNCQNIRLAS-------VPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SEEECCSSCCSS-------CCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cEEEeCCCCCCc-------cCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 455666665543 333332 566777777766 4445332 66677777777777766654 36677777
Q ss_pred eecccccccccccCcc-ccCCCCCCEEecCCCC
Q 040255 608 RLILSNNSNLERIPES-IRHLSKLTFLFISHCE 639 (869)
Q Consensus 608 ~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~ 639 (869)
+|+|++| .+..+|.. +..+++|++|+|++|+
T Consensus 85 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 85 QLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 7777777 66666665 6667777777777643
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=3.5e-09 Score=103.88 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=76.6
Q ss_pred EecCCCCCCcc-ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhccc
Q 040255 515 LEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVK 589 (869)
Q Consensus 515 L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~ 589 (869)
++++++.+..+ ..-+.+|+.|+|++|+++.+ .|..+.++++|++|+|++|. +..+|.. +++|++|+|+
T Consensus 17 l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIPTDKQRLWLNNNQITKL------EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred EEeCCCCCCccCCCcCCCCcEEEeCCCCcccc------CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 34444444444 11225667777777777632 35568889999999999997 7788874 7899999999
Q ss_pred ccccccCCCC-cCCccccceecccccccccccCccccC
Q 040255 590 GTTIRELPES-LGRLSWVKRLILSNNSNLERIPESIRH 626 (869)
Q Consensus 590 ~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP~~i~~ 626 (869)
+|.|+.+|.. +..+++|+.|+|++| .+...|..+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~~~~~ 126 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNN-PWDCECRDIMY 126 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSS-CBCTTBGGGHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCC-CcccccccHHH
Confidence 9999999876 889999999999999 77766654433
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=4.6e-09 Score=102.58 Aligned_cols=97 Identities=20% Similarity=0.382 Sum_probs=60.3
Q ss_pred ceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCC-cCCcccc
Q 040255 532 LVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPES-LGRLSWV 606 (869)
Q Consensus 532 L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~-i~~l~~L 606 (869)
.+.+++++|.++. +|..+ .++|++|+|++|. +..+++. +++|++|+|++|.|+.+|.. +..+++|
T Consensus 11 ~~~l~~s~n~l~~-------ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSGKSLAS-------VPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTTSCCSS-------CCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCEEEeCCCCcCc-------cCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 3456666666553 33333 2566777777766 5555332 56677777777777766554 3667777
Q ss_pred ceecccccccccccCcc-ccCCCCCCEEecCCCC
Q 040255 607 KRLILSNNSNLERIPES-IRHLSKLTFLFISHCE 639 (869)
Q Consensus 607 ~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~ 639 (869)
++|+|++| .+..+|.. +..+++|+.|+|++|+
T Consensus 81 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 81 TQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 77777777 66666654 6677777777777654
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=7e-09 Score=112.91 Aligned_cols=202 Identities=13% Similarity=0.141 Sum_probs=118.5
Q ss_pred CCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-ccc--------cccceeeecCCCcccccccccccCCC
Q 040255 484 MPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-NIC--------AEKLVSLKMPCTKVEQLWDDVQRLPS 554 (869)
Q Consensus 484 l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-~~~--------~~~L~~L~L~~n~l~~l~~~~~~lp~ 554 (869)
+++|+.|+|++|....+......++ .++.+.+..+.+..- +.. +.+|+.|+|+. .++.+.+ .
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~--~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~------~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP--NGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED------A 118 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG--GGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT------T
T ss_pred hccCeEEecCcceeEEecCcccccc--ccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhH------H
Confidence 7789999998865542222222222 234444444433332 334 67777777776 6654322 2
Q ss_pred ccCCCCCccEEEecCCCCCcccCcc----ccccchhccccccc----ccC------------------------------
Q 040255 555 SLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTI----REL------------------------------ 596 (869)
Q Consensus 555 ~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i----~~l------------------------------ 596 (869)
.|.++++|+.|++++|. +..+++. ..++..+.+..+.. ..+
T Consensus 119 aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 46777778888877776 4455544 22233333222100 000
Q ss_pred ---CCC---------c---------CCccccceecccccccccccCcc-ccCCCCCCEEecCCCCCCcccCCC----Ccc
Q 040255 597 ---PES---------L---------GRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHCERLQTLPEL----PCN 650 (869)
Q Consensus 597 ---P~~---------i---------~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~~lp~~----~~~ 650 (869)
|.. + ..+++|+.|+|++| .+..+|.. |..+++|+.|+|.++ +..|+.. ..+
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGR 274 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChh
Confidence 000 0 02678889999888 78888875 788889999999874 7778764 456
Q ss_pred cc-eeecccCCCCccccC-CCCCCccceEEeccCCCCCCchhhhhhhhcccccccccc
Q 040255 651 LG-LLSARNCTSLEKLPA-GLSSMSSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYE 706 (869)
Q Consensus 651 L~-~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 706 (869)
|+ .|.+.+ +++.++. .|.++++|+.++++. +++..+...++..+..++
T Consensus 275 L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~------n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 275 LAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG------DKITTLGDELFGNGVPSK 324 (329)
T ss_dssp CCEEEEECT--TCCEECTTTTTTCTTEEEEEECS------SCCCEECTTTTCTTCCCC
T ss_pred ccEEEEEcc--cceEEchhhhhCCccCCEEEeCC------CccCccchhhhcCCcchh
Confidence 77 777766 6777764 788888888888754 333333344444444444
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=6.7e-09 Score=101.42 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=74.1
Q ss_pred EEecCCCCCCcc-ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcc
Q 040255 514 HLEWPQCPLKTL-NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTV 588 (869)
Q Consensus 514 ~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L 588 (869)
.|+++++.++.+ ..-+.+|+.|+|++|+++.+ .|..+.++++|++|+|++|. +..+|.. +++|++|+|
T Consensus 13 ~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~------~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 13 TVDCSGKSLASVPTGIPTTTQVLYLYDNQITKL------EPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCcCccCccCCCCCcEEEcCCCcCCcc------ChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 344444444444 11235677777777777632 35568889999999999997 7778764 788999999
Q ss_pred cccccccCCCC-cCCccccceecccccccccccC
Q 040255 589 KGTTIRELPES-LGRLSWVKRLILSNNSNLERIP 621 (869)
Q Consensus 589 ~~n~i~~lP~~-i~~l~~L~~L~Ls~n~~l~~lP 621 (869)
++|.|+.+|+. +..+++|++|+|++| .+...+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNN-PWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCC-CCCCCc
Confidence 99999988764 889999999999999 554443
No 158
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.80 E-value=4.5e-10 Score=132.66 Aligned_cols=195 Identities=14% Similarity=0.067 Sum_probs=101.4
Q ss_pred cCCcceEEEEcCCCCcc-ccCcCCC-CCCCCeeEEecCCCCC-Cc--c---ccccccceeeecCCCcccccccccccCCC
Q 040255 483 KMPKLRFLRFYGDKNKC-MVSHLEG-VPFAEVRHLEWPQCPL-KT--L---NICAEKLVSLKMPCTKVEQLWDDVQRLPS 554 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~~~~-~~~~l~~-l~~~~L~~L~l~~~~l-~~--l---~~~~~~L~~L~L~~n~l~~l~~~~~~lp~ 554 (869)
.+++|+.|+++++.... .+..+.. .+ .+|++|++++|.. .. + ...+++|++|+|++|.++.. +...++.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~ 186 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARA-DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK--DGKWLHE 186 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHG-GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC--CSHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhcc-ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc--chhHHHH
Confidence 56666666666542211 1111111 11 2366666666541 11 1 12456666666666655321 1011222
Q ss_pred ccCCCCCccEEEecCCCCC----cccCcc---ccccchhcccccccccCCCCcCCccccceecccccccc---cccCccc
Q 040255 555 SLCTFKTPITFEIIDCKML----ERLPDE---LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNL---ERIPESI 624 (869)
Q Consensus 555 ~~~~l~~L~~L~L~~~~~l----~~lp~~---l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l---~~lP~~i 624 (869)
.+.++++|+.|+|++|..- ..++.. +++|+.|+|++|.+..+|..++.+++|+.|+++++... ...+..+
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 2345566666666666521 122222 56666666666666666666666666666666643222 2333455
Q ss_pred cCCCCCCEEecCCCCCCcccCCC---CcccceeecccCCCCcc--ccCCCCCCccceEEeccC
Q 040255 625 RHLSKLTFLFISHCERLQTLPEL---PCNLGLLSARNCTSLEK--LPAGLSSMSSVLYVNLCN 682 (869)
Q Consensus 625 ~~L~~L~~L~L~~c~~l~~lp~~---~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~l~l~~ 682 (869)
..+++|+.|+++++ ....+|.. .++|+.|++++|. +.. ++..+.++++|+.|++++
T Consensus 267 ~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 267 VFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp CCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred hccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC
Confidence 66667777776653 33444543 4577888888776 321 222346677777777653
No 159
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.71 E-value=1.2e-09 Score=129.01 Aligned_cols=198 Identities=16% Similarity=0.068 Sum_probs=126.2
Q ss_pred cccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc-----ccccccceeeecCCCcccccccccccCC
Q 040255 479 YAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL-----NICAEKLVSLKMPCTKVEQLWDDVQRLP 553 (869)
Q Consensus 479 ~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l-----~~~~~~L~~L~L~~n~l~~l~~~~~~lp 553 (869)
..+..+++|+.|.+.+.....+|..+..++ +|++|++++|.+... ...+++|+.|++. +.+.. ..++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~-----~~l~ 335 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAA--QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD-----RGLE 335 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGG--GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH-----HHHH
T ss_pred HHhhccccccccCccccchhHHHHHHhhcC--CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH-----HHHH
Confidence 345667777777777655555665555554 788888888775433 2456778888777 33321 1223
Q ss_pred CccCCCCCccEEEecC----------CCCCcc--cCc---cccccchhcccccccc-cCCCCcCC-ccccceecccc---
Q 040255 554 SSLCTFKTPITFEIID----------CKMLER--LPD---ELENLEYLTVKGTTIR-ELPESLGR-LSWVKRLILSN--- 613 (869)
Q Consensus 554 ~~~~~l~~L~~L~L~~----------~~~l~~--lp~---~l~~L~~L~L~~n~i~-~lP~~i~~-l~~L~~L~Ls~--- 613 (869)
....++++|+.|+|++ |..+.. ++. .+++|++|+++.|.++ ..+..++. +++|+.|+|++
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 3335677888888884 654542 222 1778888888877777 34455554 77888888873
Q ss_pred cccccccC------ccccCCCCCCEEecCCCCC-C-----cccCCCCcccceeecccCCCCc-cccCCCCCCccceEEec
Q 040255 614 NSNLERIP------ESIRHLSKLTFLFISHCER-L-----QTLPELPCNLGLLSARNCTSLE-KLPAGLSSMSSVLYVNL 680 (869)
Q Consensus 614 n~~l~~lP------~~i~~L~~L~~L~L~~c~~-l-----~~lp~~~~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~l~l 680 (869)
|+.++..| ..+..+++|+.|+|++|.. + ..+....++|+.|++++|..-. .++..+.++++|+.|++
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence 33566543 3366788899999876653 1 1122235678888888775322 34444567788888888
Q ss_pred cCCC
Q 040255 681 CNFL 684 (869)
Q Consensus 681 ~~~~ 684 (869)
++|.
T Consensus 496 ~~n~ 499 (592)
T 3ogk_B 496 RGCC 499 (592)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 8865
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=1.4e-07 Score=102.24 Aligned_cols=173 Identities=18% Similarity=0.111 Sum_probs=106.7
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
|....+++|++..++.+..++..+. .+.+.|+|++|+||||+|+++++.+........++... .+...+...+...
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~ 96 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN--ASDERGINVIREK 96 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE--TTCHHHHHTTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee--ccccCchHHHHHH
Confidence 3445679999999999999987543 33489999999999999999999764332111122210 1111011111111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCchhhh-hh-cCCCeEEEe
Q 040255 227 LLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDKQVL-KN-CWANKKYRM 286 (869)
Q Consensus 227 il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~~v~-~~-~~~~~~~~l 286 (869)
+ ........ ...+++.++|+||++ .+.++|+||....-. .. ......+++
T Consensus 97 ~-~~~~~~~~---------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 97 V-KEFARTKP---------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp H-HHHHHSCC---------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred H-HHHHhhCC---------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 1 11100000 012567899999997 567888888764321 11 112347899
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHh
Q 040255 287 KELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGC 335 (869)
Q Consensus 287 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~ 335 (869)
++++.++..+++...+...... -..+..+.+++.++|.|..+..+..
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999998876433221 2245678889999999987655443
No 161
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=8.9e-08 Score=104.08 Aligned_cols=195 Identities=14% Similarity=0.123 Sum_probs=124.3
Q ss_pred eeccccccc--------CCcceEEEEcCCCCccccCc-CCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCc
Q 040255 475 HMNSYAFSK--------MPKLRFLRFYGDKNKCMVSH-LEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTK 541 (869)
Q Consensus 475 ~~~~~~f~~--------l~~Lr~L~l~~~~~~~~~~~-l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~ 541 (869)
.++..+|.+ +++|+.|.+.. ....++.. +..++ +|+.|++.+|.+..+ +....++..+.+..+.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~--~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~ 159 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD--NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSD 159 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT--TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCc--ccceEEcCCCCccccchhhhcCCCceEEecCcchh
Confidence 456677777 88888888876 44445543 44444 788888887776655 3334445555544321
Q ss_pred ccccccccccC-CCccCCCCCcc--------------------------EEEecCCCCCcc---cCccccccchhccccc
Q 040255 542 VEQLWDDVQRL-PSSLCTFKTPI--------------------------TFEIIDCKMLER---LPDELENLEYLTVKGT 591 (869)
Q Consensus 542 l~~l~~~~~~l-p~~~~~l~~L~--------------------------~L~L~~~~~l~~---lp~~l~~L~~L~L~~n 591 (869)
... +...+ +..+.++..|+ .+.+.++-.... ++..+++|+.|+|++|
T Consensus 160 ~~~---~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 160 AYR---FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp HHH---TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB
T ss_pred hhh---ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC
Confidence 100 00000 01122333333 333333210000 0011568999999999
Q ss_pred ccccCCC-CcCCccccceecccccccccccCcc-ccCCCCCC-EEecCCCCCCcccCCC----CcccceeecccCCCCcc
Q 040255 592 TIRELPE-SLGRLSWVKRLILSNNSNLERIPES-IRHLSKLT-FLFISHCERLQTLPEL----PCNLGLLSARNCTSLEK 664 (869)
Q Consensus 592 ~i~~lP~-~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~-~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~ 664 (869)
+++.+|. .|.++++|+.|+|.+| +..++.. |..+++|+ .|.+.+ .+..+++. ..+|+.|++.+ +.+..
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~ 311 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITT 311 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCE
T ss_pred CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCc
Confidence 9999976 5788999999999987 7888865 89999999 999987 67788754 46788888765 57888
Q ss_pred ccC-CCCCCccceEEec
Q 040255 665 LPA-GLSSMSSVLYVNL 680 (869)
Q Consensus 665 lp~-~~~~l~~L~~l~l 680 (869)
++. .|.++++|+.++.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 877 7888888988763
No 162
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.54 E-value=1.3e-09 Score=128.77 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=52.2
Q ss_pred cCCcceEEEEcCCCCcc---ccCcCCCCCCCCeeEEecCCCCCCcc--------ccccccceeeecCCCccccccccccc
Q 040255 483 KMPKLRFLRFYGDKNKC---MVSHLEGVPFAEVRHLEWPQCPLKTL--------NICAEKLVSLKMPCTKVEQLWDDVQR 551 (869)
Q Consensus 483 ~l~~Lr~L~l~~~~~~~---~~~~l~~l~~~~L~~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~l~~~~~~ 551 (869)
.+++|+.|++.++.... ++.-...++ +|++|++++|.+... ...+++|+.|++++|. ..+. ...
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~--~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~--~~~ 202 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCR--NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVS--FSA 202 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCT--TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCC--HHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCC--CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCC--HHH
Confidence 46777777776642111 222222333 677777777664332 2245567777777665 1110 011
Q ss_pred CCCccCCCCCccEEEecCCCCCcccCcc---ccccchhccc
Q 040255 552 LPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVK 589 (869)
Q Consensus 552 lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~ 589 (869)
++..+.++++|++|+|++|..+..+|.. +++|++|+++
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 1112234567777777777555555544 5566666643
No 163
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.53 E-value=9e-09 Score=121.42 Aligned_cols=194 Identities=16% Similarity=0.122 Sum_probs=122.7
Q ss_pred cccCCcceEEEEcCCCCcc-ccCcCC-CCCCCCeeEEecCCCC-CCc--c---ccccccceeeecCCCcccccccccccC
Q 040255 481 FSKMPKLRFLRFYGDKNKC-MVSHLE-GVPFAEVRHLEWPQCP-LKT--L---NICAEKLVSLKMPCTKVEQLWDDVQRL 552 (869)
Q Consensus 481 f~~l~~Lr~L~l~~~~~~~-~~~~l~-~l~~~~L~~L~l~~~~-l~~--l---~~~~~~L~~L~L~~n~l~~l~~~~~~l 552 (869)
+..+++|+.|+++++.... .+..+. .+ ++|+.|++.+|. +.. + ...+++|++|++++|.++.. +...+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~--~~~~l 176 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSF--KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV--SGHWL 176 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHC--TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC--CGGGG
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhC--CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc--chHHH
Confidence 4578899999998864322 122222 34 499999999984 443 2 33688999999999987632 22234
Q ss_pred CCccCCCCCccEEEecCCCCCcccCcc--------ccccchhccccc-ccccCCCCcCCccccceecccccc--------
Q 040255 553 PSSLCTFKTPITFEIIDCKMLERLPDE--------LENLEYLTVKGT-TIRELPESLGRLSWVKRLILSNNS-------- 615 (869)
Q Consensus 553 p~~~~~l~~L~~L~L~~~~~l~~lp~~--------l~~L~~L~L~~n-~i~~lP~~i~~l~~L~~L~Ls~n~-------- 615 (869)
+.....+++|+.|+|++|. ..++.. +++|++|+|++| .+..+|..+.++++|+.|+++.+.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 4444578899999999986 223221 589999999988 455677777777888888754431
Q ss_pred ----------------------cccccCccccCCCCCCEEecCCCCCCcc--cC---CCCcccceeecccCCCCccccCC
Q 040255 616 ----------------------NLERIPESIRHLSKLTFLFISHCERLQT--LP---ELPCNLGLLSARNCTSLEKLPAG 668 (869)
Q Consensus 616 ----------------------~l~~lP~~i~~L~~L~~L~L~~c~~l~~--lp---~~~~~L~~L~l~~c~~l~~lp~~ 668 (869)
....+|..+..+++|+.|+|++|. +.. ++ ...++|+.|++.+|-.-..++..
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l 333 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH
Confidence 112233334456777778887776 322 11 13467777777776221222222
Q ss_pred CCCCccceEEecc
Q 040255 669 LSSMSSVLYVNLC 681 (869)
Q Consensus 669 ~~~l~~L~~l~l~ 681 (869)
...+++|+.|++.
T Consensus 334 ~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 334 ASTCKDLRELRVF 346 (594)
T ss_dssp HHHCTTCCEEEEE
T ss_pred HHhCCCCCEEEEe
Confidence 2345667777763
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=1.6e-07 Score=102.90 Aligned_cols=96 Identities=22% Similarity=0.171 Sum_probs=75.9
Q ss_pred eecCCC-cccccccccccCCCccCCCCCccEEEecC-CCCCcccCcc----ccccchhcccccccccCC-CCcCCccccc
Q 040255 535 LKMPCT-KVEQLWDDVQRLPSSLCTFKTPITFEIID-CKMLERLPDE----LENLEYLTVKGTTIRELP-ESLGRLSWVK 607 (869)
Q Consensus 535 L~L~~n-~l~~l~~~~~~lp~~~~~l~~L~~L~L~~-~~~l~~lp~~----l~~L~~L~L~~n~i~~lP-~~i~~l~~L~ 607 (869)
++.+++ .|+ .+|. +..+++|+.|+|++ |. +..+|.. +++|+.|+|++|.|+.+| ..|++|++|+
T Consensus 13 v~~~~~n~l~-------~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 13 LRCTRDGALD-------SLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp EECCSSCCCT-------TTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEcCCCCCCC-------ccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 455555 554 4777 88889999999997 65 8888864 889999999999999775 4678999999
Q ss_pred eecccccccccccCccccCCCCCCEEecCCCCC
Q 040255 608 RLILSNNSNLERIPESIRHLSKLTFLFISHCER 640 (869)
Q Consensus 608 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~L~~c~~ 640 (869)
.|+|++| .+..+|..+....+|+.|+|.+|+.
T Consensus 84 ~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 84 RLNLSFN-ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp EEECCSS-CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred EEeCCCC-ccceeCHHHcccCCceEEEeeCCCc
Confidence 9999999 8888887754444499999998653
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.50 E-value=9.3e-07 Score=95.27 Aligned_cols=168 Identities=11% Similarity=0.047 Sum_probs=103.6
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC-ccCc-eEEEEeehhhhccCCHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR-HFEG-SYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~s~~~~~~~l~ 224 (869)
|...++++|++..++.+.+++..+ ..+.+.|+|++|+||||+|+++++.+.. .+.. ...+. .........+..+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRHKI 89 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSHHH
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHHHH
Confidence 334467999999999999988754 3334889999999999999999997632 2221 11222 11100001111111
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHH-ccCceEEEecCCC------------------CCcEEEEEeCchh-hhhh-cCCCeE
Q 040255 225 KKLLSELSKDGNMRNIESQLNRL-ARKKVRIVFDDVT------------------SGSRVIITTRDKQ-VLKN-CWANKK 283 (869)
Q Consensus 225 ~~il~~l~~~~~~~~~~~l~~~L-~~kr~LlVLDDv~------------------~gsrIivTTR~~~-v~~~-~~~~~~ 283 (869)
..+.... .+ .+++.++|+||++ .+.++|+||.... +... ......
T Consensus 90 ~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 90 KEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp HHHHHSC--------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred HHHHhcC--------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 1111000 01 2567899999997 4567787776543 1111 123358
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 284 YRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 284 ~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
+++.+++.++..+++...+-..... -..+....+++.++|.+..+..+
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999998776433221 22456778889999998865543
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.49 E-value=1.3e-06 Score=97.47 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=96.5
Q ss_pred eecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCcccccccccc
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQLWDDVQ 550 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~ 550 (869)
.+...+|.+. +|+.+.+..+ ...+......-. +|+.+.+.. .++.+ +..+.+|+.++++.|+++.+..
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~--- 197 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA--- 197 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT---
T ss_pred EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech---
Confidence 3445566663 5666666543 223333222222 566666654 44444 4455666777776666654322
Q ss_pred cCCCccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCCCCcCCccccceecccccccccccCcc-cc
Q 040255 551 RLPSSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELPESLGRLSWVKRLILSNNSNLERIPES-IR 625 (869)
Q Consensus 551 ~lp~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~ 625 (869)
......+|+.+.|..+ +..++.. +.+|+.+.|..+ ++.++.....-.+|+.+.|.+ .+..++.. +.
T Consensus 198 ----~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~ 268 (401)
T 4fdw_A 198 ----STFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN--GVTNIASRAFY 268 (401)
T ss_dssp ----TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET--TCCEECTTTTT
T ss_pred ----hhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC--CccEEChhHhh
Confidence 2222456666666532 5555554 455666666543 455543322225666666633 35555433 56
Q ss_pred CCCCCCEEecCCCCCC----cccCCC----CcccceeecccCCCCccccC-CCCCCccceEEeccC
Q 040255 626 HLSKLTFLFISHCERL----QTLPEL----PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCN 682 (869)
Q Consensus 626 ~L~~L~~L~L~~c~~l----~~lp~~----~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~ 682 (869)
.+++|+.+.+.++... ..++.. ..+|+.+.+.+ ++..++. .|.++++|+.+++..
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc
Confidence 6666666666553221 134332 23555555542 3555554 555666666666543
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=1.8e-08 Score=111.45 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=93.4
Q ss_pred CCcceEEEEcCCCCcc-----ccCcCCCCCCCCeeEEecCCCCCCcc-----ccccccceeeecCCCcccccccccccCC
Q 040255 484 MPKLRFLRFYGDKNKC-----MVSHLEGVPFAEVRHLEWPQCPLKTL-----NICAEKLVSLKMPCTKVEQLWDDVQRLP 553 (869)
Q Consensus 484 l~~Lr~L~l~~~~~~~-----~~~~l~~l~~~~L~~L~l~~~~l~~l-----~~~~~~L~~L~L~~n~l~~l~~~~~~lp 553 (869)
+++|+.|++++|.... +...+...+ .+|+.|++++|.+... ...+.+|+.|+|++|.++.. +...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~--~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGR-HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE--ACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCS-SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH--HHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCC-CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH--HHHHHH
Confidence 4677788887765432 122222222 4788888888887643 22456788888888877532 112222
Q ss_pred Ccc-CCCCCccEEEecCCCCCcc-----cCcc---ccccchhccccccccc-----CCCCcCCccccceecccccccccc
Q 040255 554 SSL-CTFKTPITFEIIDCKMLER-----LPDE---LENLEYLTVKGTTIRE-----LPESLGRLSWVKRLILSNNSNLER 619 (869)
Q Consensus 554 ~~~-~~l~~L~~L~L~~~~~l~~-----lp~~---l~~L~~L~L~~n~i~~-----lP~~i~~l~~L~~L~Ls~n~~l~~ 619 (869)
..+ ...++|+.|+|++|. ++. ++.. .++|++|+|++|.|+. ++..+...++|++|+|++| .++.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 222 235678888888886 543 2221 5677888888887763 3445566677888888887 5553
Q ss_pred -----cCccccCCCCCCEEecCCCC
Q 040255 620 -----IPESIRHLSKLTFLFISHCE 639 (869)
Q Consensus 620 -----lP~~i~~L~~L~~L~L~~c~ 639 (869)
++..+...++|++|+|++|.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC
Confidence 34445566778888888764
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.48 E-value=6.8e-07 Score=88.17 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=41.1
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
....++||+..++++.+.+... ..+.+.|+|++|+||||||+++++.+.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999988653 345678999999999999999999764
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.45 E-value=1.4e-06 Score=96.20 Aligned_cols=174 Identities=14% Similarity=0.103 Sum_probs=104.1
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHH
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLL 228 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il 228 (869)
...+++|++..++.+...+..+. ....+.|+|++|+||||+|+++++.+....... .. ..+...-...+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~--------~~~~~~~~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-AT--------PCGVCDNCREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SS--------CCSSSHHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CC--------CCcccHHHHHHh
Confidence 44679999999999999887542 234678999999999999999998764322100 00 000000000000
Q ss_pred HH----h---hcCC-CCC-CHHHHHHHH-----ccCceEEEecCCC------------------CCcEEEEEeCchh-hh
Q 040255 229 SE----L---SKDG-NMR-NIESQLNRL-----ARKKVRIVFDDVT------------------SGSRVIITTRDKQ-VL 275 (869)
Q Consensus 229 ~~----l---~~~~-~~~-~~~~l~~~L-----~~kr~LlVLDDv~------------------~gsrIivTTR~~~-v~ 275 (869)
.. + .... ... ....+.+.+ .+++.++|+||++ .+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0 0000 001 133333333 2467899999997 3456777776443 11
Q ss_pred h-hcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 276 K-NCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 276 ~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
. .......+++.+++.++..+++...+-..... -..+....+++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 11234689999999999999998765321111 123567789999999998876654
No 170
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.43 E-value=1.5e-06 Score=94.07 Aligned_cols=218 Identities=14% Similarity=0.045 Sum_probs=121.4
Q ss_pred CcCCcceeccccHHHHHHhhccC---CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIG---SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
...+.++|++..++++...+... ......|.|+|++|+|||+||+++++.....| .++. . +.......+.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~---~~~~~~~~l~ 81 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-G---PAIEKPGDLA 81 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-T---TTCCSHHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-c---cccCChHHHH
Confidence 34567999999999988877531 12345688999999999999999999775332 2222 1 1111222222
Q ss_pred HHHHHHhhc------CCCCC-C---HHHHHHHHccCceEEEecCCC---------CCcEEEEEeCchhhhh-hc--CCCe
Q 040255 225 KKLLSELSK------DGNMR-N---IESQLNRLARKKVRIVFDDVT---------SGSRVIITTRDKQVLK-NC--WANK 282 (869)
Q Consensus 225 ~~il~~l~~------~~~~~-~---~~~l~~~L~~kr~LlVLDDv~---------~gsrIivTTR~~~v~~-~~--~~~~ 282 (869)
..+...+.. ++... . ...+.+.+....+-+|.++-. ++.++|.||....... .. ....
T Consensus 82 ~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~ 161 (324)
T 1hqc_A 82 AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI 161 (324)
T ss_dssp HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSC
T ss_pred HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccE
Confidence 211110110 00000 0 233333344444433333221 1345776666442211 11 1235
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHHhhhcC---------CCHHHHHHHHHHHh
Q 040255 283 KYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLGCYLCG---------RSKEVWESAMRKLE 353 (869)
Q Consensus 283 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g~~L~~---------~~~~~w~~~l~~l~ 353 (869)
.+.+++++.+|..+++...+...... -..+....++++++|.|..+..+...+.. -+.+....++..+
T Consensus 162 ~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~- 238 (324)
T 1hqc_A 162 VEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL- 238 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH-
T ss_pred EEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-
Confidence 89999999999999998877443221 22466788999999999888766544421 1333443333322
Q ss_pred cCCCchhhhHHHhhhccCcHHHHHHHhhccccc
Q 040255 354 IIPHVEIEEVLKISYDSLDDSQKNVFLDIACFL 386 (869)
Q Consensus 354 ~~~~~~i~~~L~~Sy~~L~~~~k~~fl~~a~F~ 386 (869)
...+..|++.++..+..++...
T Consensus 239 -----------~~~~~~l~~~e~~~i~~~~~~~ 260 (324)
T 1hqc_A 239 -----------GLDELGLEKRDREILEVLILRF 260 (324)
T ss_dssp -----------TCCTTCCCHHHHHHHHHHHHHS
T ss_pred -----------cccccCCCHHHHHHHHHHHHHh
Confidence 2334567777777776655443
No 171
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.42 E-value=2.2e-06 Score=95.64 Aligned_cols=190 Identities=9% Similarity=0.120 Sum_probs=138.4
Q ss_pred eeecccccccCCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc---ccccccceeeecCCCccccccccc
Q 040255 474 IHMNSYAFSKMPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL---NICAEKLVSLKMPCTKVEQLWDDV 549 (869)
Q Consensus 474 ~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~ 549 (869)
..+...+|.+ .+|+.+.+.+ ....+.. .+.... +|+.+++.+|.++.+ .|...+|..+.|+.+ ++.+..
T Consensus 147 ~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~--~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~-- 219 (401)
T 4fdw_A 147 KSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCY--NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGS-- 219 (401)
T ss_dssp CEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCT--TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECT--
T ss_pred cEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcc--cCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehh--
Confidence 4567788888 4799998875 3334443 344444 899999999888887 555688999998844 554322
Q ss_pred ccCCCccCCCCCccEEEecCCCCCcccCcc---ccccchhcccccccccC-CCCcCCccccceeccccccccc-----cc
Q 040255 550 QRLPSSLCTFKTPITFEIIDCKMLERLPDE---LENLEYLTVKGTTIREL-PESLGRLSWVKRLILSNNSNLE-----RI 620 (869)
Q Consensus 550 ~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~---l~~L~~L~L~~n~i~~l-P~~i~~l~~L~~L~Ls~n~~l~-----~l 620 (869)
..|.++++|+.++|..+ +..++.. -.+|+.+.| .++++.+ +..+.++++|+.+++.+| .+. .+
T Consensus 220 ----~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I 291 (401)
T 4fdw_A 220 ----QAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMI 291 (401)
T ss_dssp ----TTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEE
T ss_pred ----hHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEE
Confidence 25788999999999874 6777766 457888888 4557777 556788999999999887 444 46
Q ss_pred Cc-cccCCCCCCEEecCCCCCCcccCCC----CcccceeecccCCCCccccC-CCCCCccceEEeccCC
Q 040255 621 PE-SIRHLSKLTFLFISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPA-GLSSMSSVLYVNLCNF 683 (869)
Q Consensus 621 P~-~i~~L~~L~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~l~l~~~ 683 (869)
+. .+..+++|+.+.|.+ .+..++.. ..+|+.|.+.+ ++..++. .|.++ +|+.++++.+
T Consensus 292 ~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 54 488899999999984 47777764 36788888854 4777765 67777 8988887764
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.8e-06 Score=99.64 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=103.6
Q ss_pred cCcCCcceeccccHHHHHHhhccCC---------------CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEee
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGS---------------EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNV 211 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 211 (869)
|....+++|++..+++|..++.... +..+.+.|+|++|+||||+|+++++.+. +. .+.+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-- 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-- 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC--
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe--
Confidence 3445679999999999999986410 1347899999999999999999999873 11 11221
Q ss_pred hhhhccCCHHHHHHHHHHHhhc-CCCCCCHHHHHHH--HccCceEEEecCCC-------------------CCcEEEEEe
Q 040255 212 REAEETGGIKDLQKKLLSELSK-DGNMRNIESQLNR--LARKKVRIVFDDVT-------------------SGSRVIITT 269 (869)
Q Consensus 212 ~~~s~~~~~~~l~~~il~~l~~-~~~~~~~~~l~~~--L~~kr~LlVLDDv~-------------------~gsrIivTT 269 (869)
.+...... +....+..... .....-.....+. ...++.+|++|+++ .+.+||+++
T Consensus 110 --~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~ 186 (516)
T 1sxj_A 110 --ASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILIC 186 (516)
T ss_dssp --TTSCCCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEE
T ss_pred --CCCcchHH-HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEE
Confidence 12222222 22222221111 1110000000001 23578899999997 345577666
Q ss_pred Cchh---hhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCc-hhHHHH
Q 040255 270 RDKQ---VLKNCWANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVP-LALKVL 333 (869)
Q Consensus 270 R~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP-Lal~~~ 333 (869)
.+.. +.........+++++++.++..+.+...+..... .. .+....|++.++|.+ -++..+
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 5432 2222234568999999999999998877643221 12 234678888999855 444444
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.41 E-value=1.3e-06 Score=98.63 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=101.4
Q ss_pred Ccce-eccccH--HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCce--EEEEeehhhhccCCHHHHHH
Q 040255 151 KGLV-GVECSI--EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGS--YFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 151 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~--~~~~~~~~~s~~~~~~~l~~ 225 (869)
+.|| |....+ ..+........ ....+.|+|++|+||||||+++++.+...+... .++.. ..+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~----------~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH----------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHH
Confidence 4566 654433 23333333222 256789999999999999999999876655332 33331 12233
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCch---------hhh
Q 040255 226 KLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDK---------QVL 275 (869)
Q Consensus 226 ~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~---------~v~ 275 (869)
++...+... ....+.+.++.+.-+|+|||++ .|..||+||... .+.
T Consensus 174 ~~~~~~~~~----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 174 DLVDSMKEG----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp HHHHHHHTT----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH
T ss_pred HHHHHHHcc----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH
Confidence 343333321 1334455555467899999996 577899998863 222
Q ss_pred hhcCCCeEEEeCCCCHHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 276 KNCWANKKYRMKELVYADAHKLFCQWAFGGD-HLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 276 ~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
..+....++.+++++.++..+++.+.+-... ..+ .+....|++.+.|.+-.+..
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 2232335788999999999999988764211 112 23466778888888865543
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.38 E-value=5e-06 Score=88.07 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=97.2
Q ss_pred CcCCcceeccccHHHHHHhhccC-----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhc
Q 040255 148 SKNKGLVGVECSIEEIESLLCIG-----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEE 216 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~ 216 (869)
...++++|++..+++|.+.+... ....+-+.|+|++|+|||+||+++++.....|- .+. ..+...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RVV-GSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EEE-GGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hHHHHH
Confidence 34567999999999998877431 133456889999999999999999998654321 111 111111
Q ss_pred cC-C-HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------
Q 040255 217 TG-G-IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------------------------- 260 (869)
Q Consensus 217 ~~-~-~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------------------------- 260 (869)
.. + .......+ +......++.+|+|||++
T Consensus 90 ~~~~~~~~~~~~~---------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 KFIGEGASLVKDI---------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp CSTTHHHHHHHHH---------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred hccchHHHHHHHH---------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 10 1 11111111 122223456789999985
Q ss_pred CCcEEEEEeCchhhhh-----hcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHHcCCC-chhHHH
Q 040255 261 SGSRVIITTRDKQVLK-----NCWANKKYRMKELVYADAHKLFCQWAFGGDHL-DASHIELTDKAIKYAQGV-PLALKV 332 (869)
Q Consensus 261 ~gsrIivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl-PLal~~ 332 (869)
.+..||.||....... .......+.++.++.++..+++...+...... ..+ ...+++.+.|. |-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 2446777887543322 11233578999999999999998876443222 222 34566667663 434443
No 175
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.37 E-value=1.7e-06 Score=88.90 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=96.8
Q ss_pred cCCcceecc---ccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHH
Q 040255 149 KNKGLVGVE---CSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQK 225 (869)
Q Consensus 149 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 225 (869)
..+.++|.+ ..++.+..++... ..+.+.|+|++|+||||||+++++..........|+.. .+..... .
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~~~------~ 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHASIS------T 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGGSC------G
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHHHH------H
Confidence 346688743 4455555555432 45678899999999999999999977654344455542 1111100 0
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------------CCc-EEEEEeCchh---------h
Q 040255 226 KLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------------SGS-RVIITTRDKQ---------V 274 (869)
Q Consensus 226 ~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------------~gs-rIivTTR~~~---------v 274 (869)
.. + +.+ .++.+||+||++ .+. ++|+||+... +
T Consensus 97 ~~---------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 AL---------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp GG---------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred HH---------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 00 0 001 346789999986 232 5888887432 1
Q ss_pred hhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 275 LKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 275 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
...+.....+++++++.++..+++...+-.... .-..+....+++.++|.+-.+..+.
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 111112268999999999999999887642221 1224567788899999887665543
No 176
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.31 E-value=1.1e-06 Score=96.07 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=71.2
Q ss_pred EEEecCCCCCcccCcc--ccccchhcccc-cccccCC-CCcCCccccceecccccccccccCc-cccCCCCCCEEecCCC
Q 040255 564 TFEIIDCKMLERLPDE--LENLEYLTVKG-TTIRELP-ESLGRLSWVKRLILSNNSNLERIPE-SIRHLSKLTFLFISHC 638 (869)
Q Consensus 564 ~L~L~~~~~l~~lp~~--l~~L~~L~L~~-n~i~~lP-~~i~~l~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L~L~~c 638 (869)
.++++++..+..+|.. +.+|+.|+|++ |.|+.+| ..|+.|++|+.|+|++| .+..+|+ .|.+|++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577777348888874 56788999986 8998876 56888999999999999 6777665 5788999999999984
Q ss_pred CCCcccCCC-C--cccceeecccC
Q 040255 639 ERLQTLPEL-P--CNLGLLSARNC 659 (869)
Q Consensus 639 ~~l~~lp~~-~--~~L~~L~l~~c 659 (869)
.+..+|.. + .+|+.|++.++
T Consensus 91 -~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 91 -ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp -CCSCCCSTTTCSCCCCEEECCSS
T ss_pred -ccceeCHHHcccCCceEEEeeCC
Confidence 45667653 2 23778887764
No 177
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.31 E-value=4.2e-08 Score=108.45 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=97.6
Q ss_pred CCeeEEecCCCCCCcc---------ccccccceeeecCCCcccccccccccCCCccCCCCCccEEEecCCCCCcccCcc-
Q 040255 510 AEVRHLEWPQCPLKTL---------NICAEKLVSLKMPCTKVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLERLPDE- 579 (869)
Q Consensus 510 ~~L~~L~l~~~~l~~l---------~~~~~~L~~L~L~~n~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~- 579 (869)
+.|+.|++++|.+... .....+|++|+|++|.++.. +...+ ...+++|+.|+|++|. ++.....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~--~~~~l---~~~L~~L~~L~Ls~n~-l~~~~~~~ 145 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA--GLRTL---LPVFLRARKLGLQLNS-LGPEACKD 145 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH--HHHHT---HHHHHTEEEEECCSSC-CCHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH--HHHHH---HHHHHhccHhhcCCCC-CCHHHHHH
Confidence 4789999999998764 11236899999999987531 11111 1234578999999997 5432221
Q ss_pred --------ccccchhccccccccc-----CCCCcCCccccceecccccccccc-----cCccccCCCCCCEEecCCCCCC
Q 040255 580 --------LENLEYLTVKGTTIRE-----LPESLGRLSWVKRLILSNNSNLER-----IPESIRHLSKLTFLFISHCERL 641 (869)
Q Consensus 580 --------l~~L~~L~L~~n~i~~-----lP~~i~~l~~L~~L~Ls~n~~l~~-----lP~~i~~L~~L~~L~L~~c~~l 641 (869)
.++|++|+|++|.|+. ++..+..+++|++|+|++| .++. ++..+...++|+.|+|++|...
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 3668999999998863 4555567788999999988 5654 4556777888999999887542
Q ss_pred c----ccCCC---CcccceeecccCC
Q 040255 642 Q----TLPEL---PCNLGLLSARNCT 660 (869)
Q Consensus 642 ~----~lp~~---~~~L~~L~l~~c~ 660 (869)
. .++.. .++|+.|++++|.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 2 12222 3678888888764
No 178
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=8.3e-06 Score=89.19 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=105.3
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC--ccCceEEEEeehhhhccCCHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR--HFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
|.....++|++..++.+...+..+. ...+.|+|++|+||||+|+++++.+.. .+...+.-.+ .+...+...+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~---~~~~~~~~~~~ 107 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN---ASDERGISIVR 107 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC---SSSCCCHHHHT
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc---cccccchHHHH
Confidence 3445679999999999999887543 223889999999999999999997642 1222221111 11112333332
Q ss_pred HHHHHHhhcCCCCCC-HHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCchh-hhhh-cCCCeE
Q 040255 225 KKLLSELSKDGNMRN-IESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDKQ-VLKN-CWANKK 283 (869)
Q Consensus 225 ~~il~~l~~~~~~~~-~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~~-v~~~-~~~~~~ 283 (869)
..+ ........... .......-..++-+|++|+++ ...++|++|.... +... ......
T Consensus 108 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 108 EKV-KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp THH-HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred HHH-HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 222 11111100000 000000112355699999997 4567777775432 1111 112247
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 284 YRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 284 ~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
+++.+++.++..+.+...+-..... -..+..+.+++.++|.|..+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999998876432221 12466788999999999865443
No 179
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.30 E-value=4.5e-06 Score=89.07 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=94.1
Q ss_pred cceeccccHHHHHHhhcc--CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-----C--ceEEEEeehhhhccCCHHH
Q 040255 152 GLVGVECSIEEIESLLCI--GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF-----E--GSYFALNVREAEETGGIKD 222 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~--~~~~~~~~~~~s~~~~~~~ 222 (869)
.+.||++++++|...|.. ..+....+.|+|++|.|||++|+++++++.... . ..+.+.+. ...+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----ELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----ccCCHHH
Confidence 489999999999887753 234567789999999999999999999774321 1 12334321 2234456
Q ss_pred HHHHHHHHhhcCCCCC--CHHHHHHHH------ccCceEEEecCCC-----------------CCcEE--EEEeCchhh-
Q 040255 223 LQKKLLSELSKDGNMR--NIESQLNRL------ARKKVRIVFDDVT-----------------SGSRV--IITTRDKQV- 274 (869)
Q Consensus 223 l~~~il~~l~~~~~~~--~~~~l~~~L------~~kr~LlVLDDv~-----------------~gsrI--ivTTR~~~v- 274 (869)
+...|..++.+..... ..+.+.+.+ .+++++++||+++ ..+++ |.++...+.
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 7777888876543222 234444333 3567999999998 34444 333433211
Q ss_pred --------hhhcCCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 275 --------LKNCWANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 275 --------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
...++ ...+.+++++.+|-.+++.+++
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 12221 2578999999999999998775
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=1.7e-05 Score=85.65 Aligned_cols=162 Identities=13% Similarity=0.089 Sum_probs=94.6
Q ss_pred CCcce-ecccc--HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH
Q 040255 150 NKGLV-GVECS--IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 150 ~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
.+.|| |.... ...+...+.........+.|+|++|+||||||+++++.+...-...+++.. ..+...
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~----------~~~~~~ 79 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA----------DDFAQA 79 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH----------HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH----------HHHHHH
Confidence 34565 54332 234444444332245678899999999999999999976443112333331 122223
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCch---------hhhh
Q 040255 227 LLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDK---------QVLK 276 (869)
Q Consensus 227 il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~---------~v~~ 276 (869)
+...+... ....+...+. +.-+|+|||++ .|.+||+||... .+..
T Consensus 80 ~~~~~~~~----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 80 MVEHLKKG----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS 154 (324)
T ss_dssp HHHHHHHT----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH
T ss_pred HHHHHHcC----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh
Confidence 33332211 1223333333 46799999996 567888888643 1222
Q ss_pred hcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhH
Q 040255 277 NCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLAL 330 (869)
Q Consensus 277 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 330 (869)
.+.....+++++ +.++..+++...+...... -..+....+++++ |..-.+
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHH
T ss_pred cccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHH
Confidence 222336789999 9999999998877432221 1245567788888 766543
No 181
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.26 E-value=1e-05 Score=91.16 Aligned_cols=165 Identities=17% Similarity=0.201 Sum_probs=102.0
Q ss_pred cCcCCcceeccccH---HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHH
Q 040255 147 QSKNKGLVGVECSI---EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 147 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 223 (869)
|...+.+||.+..+ ..|...+..+ ....+.|+|++|+||||||+.+++.....|.. +. ....+...+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-----a~~~~~~~i 91 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-----AVTSGVKEI 91 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-----TTTCCHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-----eccCCHHHH
Confidence 34456799998877 6677777643 34678999999999999999999987554321 11 112233333
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------CCc-EEEE-EeCchh--h-hhhcCCCeE
Q 040255 224 QKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------SGS-RVII-TTRDKQ--V-LKNCWANKK 283 (869)
Q Consensus 224 ~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------~gs-rIiv-TTR~~~--v-~~~~~~~~~ 283 (869)
...+ ... ......+++.+|+||+++ .|. .+|. ||.+.. + ........+
T Consensus 92 r~~~-~~a-----------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v 159 (447)
T 3pvs_A 92 REAI-ERA-----------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARV 159 (447)
T ss_dssp HHHH-HHH-----------HHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEE
T ss_pred HHHH-HHH-----------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeE
Confidence 2221 111 111124678899999998 333 3443 444432 1 111123458
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCC-----CCCccHHHHHHHHHHHcCCCchhHHHH
Q 040255 284 YRMKELVYADAHKLFCQWAFGGD-----HLDASHIELTDKAIKYAQGVPLALKVL 333 (869)
Q Consensus 284 ~~l~~L~~~ea~~Lf~~~af~~~-----~~~~~~~~~~~~i~~~~~GlPLal~~~ 333 (869)
+.+++++.++..+++.+.+-... ....-..+..+.++++++|.+-.+..+
T Consensus 160 ~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 160 YLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp EECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 89999999999999988764311 111223467778888899988765543
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.19 E-value=2.3e-05 Score=85.96 Aligned_cols=185 Identities=14% Similarity=0.134 Sum_probs=105.1
Q ss_pred hhhhHhHHHHHHHhhccccccCcCCcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHH
Q 040255 127 ESKLIEEIANDVLKRLDATFQSKNKGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 127 e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
+...++.+...+..+ .++...++++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||+++++
T Consensus 63 ~~~~~~~i~~~i~~~---~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 63 EPKMIELIMNEIMDH---GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CHHHHHHHHHHTBCC---SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccC---CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 334445444444332 2233446799999999999887642 113356788999999999999999998
Q ss_pred hhcCccCceEEEEeehhhhccC-C-HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC--------------
Q 040255 197 KISRHFEGSYFALNVREAEETG-G-IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-------------- 260 (869)
Q Consensus 197 ~~~~~F~~~~~~~~~~~~s~~~-~-~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-------------- 260 (869)
.....| +.+. ..+..... + .....+.++. ..-..++.+|+||+++
T Consensus 140 ~~~~~~---~~i~-~~~l~~~~~g~~~~~~~~~~~---------------~a~~~~~~vl~iDEid~l~~~~~~~~~~~~ 200 (357)
T 3d8b_A 140 QSGATF---FSIS-ASSLTSKWVGEGEKMVRALFA---------------VARCQQPAVIFIDEIDSLLSQRGDGEHESS 200 (357)
T ss_dssp HTTCEE---EEEE-GGGGCCSSTTHHHHHHHHHHH---------------HHHHTCSEEEEEETHHHHTBC------CHH
T ss_pred HcCCeE---EEEe-hHHhhccccchHHHHHHHHHH---------------HHHhcCCeEEEEeCchhhhccCCCCcchHH
Confidence 764332 1222 22111111 1 1111111111 1123456788888883
Q ss_pred -------------------CCcEEEEEeCchhhhh-h--cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHH
Q 040255 261 -------------------SGSRVIITTRDKQVLK-N--CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDK 318 (869)
Q Consensus 261 -------------------~gsrIivTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~ 318 (869)
.+..||.||.....+. . -.....+.++..+.++..+++...+-...... ..+....
T Consensus 201 ~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~l~~ 278 (357)
T 3d8b_A 201 RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL--SEEEIEQ 278 (357)
T ss_dssp HHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--CHHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--cHHHHHH
Confidence 1234555665432211 0 12345788999999999999887764322111 1345677
Q ss_pred HHHHcCC-CchhHHHHHh
Q 040255 319 AIKYAQG-VPLALKVLGC 335 (869)
Q Consensus 319 i~~~~~G-lPLal~~~g~ 335 (869)
+++.+.| .+-.+..+..
T Consensus 279 la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 279 IVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHTTTCCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHH
Confidence 8888888 4455555543
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.18 E-value=1.5e-05 Score=86.79 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=99.5
Q ss_pred CcCCcceeccccHHHHHHhhccC---CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHH
Q 040255 148 SKNKGLVGVECSIEEIESLLCIG---SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQ 224 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 224 (869)
...++++|++..++++..++... ......|.|+|++|+|||+||++++++....|- .+. . ........+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~~-~---~~~~~~~~~~ 98 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TTA-A---PMIEKSGDLA 98 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EEE-G---GGCCSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eec-c---hhccchhHHH
Confidence 34567999999999998888642 334456899999999999999999987654431 121 1 1111222222
Q ss_pred HHHHHHhhcC------CCC-CC---HHHHHHHHccCceEEEecCCC---------CCcEEEEEeCchhhhh---hcCCCe
Q 040255 225 KKLLSELSKD------GNM-RN---IESQLNRLARKKVRIVFDDVT---------SGSRVIITTRDKQVLK---NCWANK 282 (869)
Q Consensus 225 ~~il~~l~~~------~~~-~~---~~~l~~~L~~kr~LlVLDDv~---------~gsrIivTTR~~~v~~---~~~~~~ 282 (869)
..+...... +.. .. ...+.+.+...++.+|..+-. ++.++|.||....... .-....
T Consensus 99 -~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~ 177 (338)
T 3pfi_A 99 -AILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGM 177 (338)
T ss_dssp -HHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSE
T ss_pred -HHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCE
Confidence 122211100 000 00 334444455555444443310 2346666665432211 012246
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 283 KYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 283 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
.+.+++++.++..+++...+-... ..-..+..+.+++.+.|.|-.+..+.
T Consensus 178 ~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 178 QFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 899999999999999987763322 12234667788889999996655443
No 184
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.16 E-value=2.6e-05 Score=83.11 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=97.4
Q ss_pred CcCCcceeccccHHHHHHhhccC----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc
Q 040255 148 SKNKGLVGVECSIEEIESLLCIG----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET 217 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 217 (869)
....+++|.+..++.|.+.+... ....+.|.|+|++|+||||+|+++++.....| ..+. .......
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~~ 93 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTSK 93 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhhc
Confidence 34477999999999998876321 12346788999999999999999999765332 1121 1111100
Q ss_pred --CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------C------
Q 040255 218 --GGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------S------ 261 (869)
Q Consensus 218 --~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------~------ 261 (869)
.......+.++ ......++.+|+||+++ +
T Consensus 94 ~~~~~~~~~~~~~---------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 94 YVGDGEKLVRALF---------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp SCSCHHHHHHHHH---------------HHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred ccchHHHHHHHHH---------------HHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 11122222221 11223456788899885 1
Q ss_pred CcEEEEEeCchh-----hhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHHHH
Q 040255 262 GSRVIITTRDKQ-----VLKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL-ALKVLG 334 (869)
Q Consensus 262 gsrIivTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g 334 (869)
+..||.||.... +... ....+.++..+.++..+++...+-...... ..+....+++.+.|.+- ++..+.
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 134566776542 2222 235778888888888888877653322111 13456778888888875 554443
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.16 E-value=4.2e-05 Score=79.69 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=93.4
Q ss_pred CCcceeccccHHHHHHhhcc---C-------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC-
Q 040255 150 NKGLVGVECSIEEIESLLCI---G-------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG- 218 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~- 218 (869)
.++++|.+..+++|.+++.. . ....+-|.|+|++|+|||++|++++++....| ..+. ........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 35689998888777665431 1 12345688999999999999999999765432 1222 11111111
Q ss_pred CH-HHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-----------------------------------CC
Q 040255 219 GI-KDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-----------------------------------SG 262 (869)
Q Consensus 219 ~~-~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-----------------------------------~g 262 (869)
+. ...... .+.......+.+|+|||++ .+
T Consensus 81 ~~~~~~~~~---------------~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 81 GLGAARVRS---------------LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp THHHHHHHH---------------HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ChhHHHHHH---------------HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00 111111 1122223456788888886 12
Q ss_pred cEEEEEeCchhhhhh----c-CCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHHH
Q 040255 263 SRVIITTRDKQVLKN----C-WANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL-ALKVL 333 (869)
Q Consensus 263 srIivTTR~~~v~~~----~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 333 (869)
..||.||.....+.. . .....+.++.++.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 356667755432211 1 23467889999999999999887643222 11222234677888888754 44433
No 186
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.15 E-value=2.5e-05 Score=85.90 Aligned_cols=178 Identities=11% Similarity=-0.019 Sum_probs=98.5
Q ss_pred CCcceeccccHHHHH---HhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH
Q 040255 150 NKGLVGVECSIEEIE---SLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
.+.+||++..++.+. ..+..+....+.+.|+|++|+|||++|+++++.+...... +.+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHH
Confidence 567999998877644 4444333333678999999999999999999987643221 111111111122223333333
Q ss_pred HHHHhhcC-------------------------------CCCCCHHHHHHH---------HccC----ceEEEecCCC--
Q 040255 227 LLSELSKD-------------------------------GNMRNIESQLNR---------LARK----KVRIVFDDVT-- 260 (869)
Q Consensus 227 il~~l~~~-------------------------------~~~~~~~~l~~~---------L~~k----r~LlVLDDv~-- 260 (869)
.+....+. ........+++. ..++ +.+|+||+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 32221100 000001111111 1233 3599999997
Q ss_pred ---------------CCcEEEEEeCc-----------------hhhhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC
Q 040255 261 ---------------SGSRVIITTRD-----------------KQVLKNCWANKKYRMKELVYADAHKLFCQWAFGGDHL 308 (869)
Q Consensus 261 ---------------~gsrIivTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 308 (869)
....++++|.. +.+... ...+.+++++.++..+++...+-....
T Consensus 202 ~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~~~- 277 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEEDV- 277 (368)
T ss_dssp BHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 22344445431 122222 245899999999999999877643222
Q ss_pred CccHHHHHHHHHHHcC-CCchhHHHH
Q 040255 309 DASHIELTDKAIKYAQ-GVPLALKVL 333 (869)
Q Consensus 309 ~~~~~~~~~~i~~~~~-GlPLal~~~ 333 (869)
.-..+....+++++. |.|..+..+
T Consensus 278 -~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 278 -EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp -CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 122456778888887 777655443
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.14 E-value=4.4e-05 Score=82.37 Aligned_cols=166 Identities=17% Similarity=0.096 Sum_probs=97.5
Q ss_pred CcCCcceeccccHHHHHHhhc----------cCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc
Q 040255 148 SKNKGLVGVECSIEEIESLLC----------IGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET 217 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 217 (869)
..-.+++|.+..+++|.+.+. ......+-|.|+|++|+|||+||+++++.....|- .+. ..+....
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~---~v~-~~~l~~~ 90 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF---SVS-SSDLVSK 90 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEE---EEE-HHHHHTT
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEE---EEc-hHHHhhc
Confidence 344679999999999988772 11223456889999999999999999998654331 111 1111000
Q ss_pred --CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC--------------------------------CCc
Q 040255 218 --GGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT--------------------------------SGS 263 (869)
Q Consensus 218 --~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~--------------------------------~gs 263 (869)
.......+.++ ...-..++.+|+||+++ .+.
T Consensus 91 ~~g~~~~~~~~~f---------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 91 WMGESEKLVKQLF---------------AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp TGGGHHHHHHHHH---------------HHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred ccchHHHHHHHHH---------------HHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 01111122221 11223456788899986 233
Q ss_pred EEEEEeCchhhhhh---cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHHHH
Q 040255 264 RVIITTRDKQVLKN---CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGV-PLALKVLG 334 (869)
Q Consensus 264 rIivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 334 (869)
.||.||.....+.. -.....+.++..+.++-.+++..++....... .......+++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45657765432210 02346788999999999999988774332211 133456777888774 43444433
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.13 E-value=4.9e-05 Score=79.81 Aligned_cols=181 Identities=10% Similarity=0.019 Sum_probs=95.4
Q ss_pred CcceeccccHHHHHH-------hhcc-CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHH
Q 040255 151 KGLVGVECSIEEIES-------LLCI-GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKD 222 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~ 222 (869)
..++|.+..++++.. .+.. .....+.|.|+|++|+|||+||+++++.....| +.+...... .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCCchHH
Confidence 457787777666555 2321 234567889999999999999999999754332 112111100 0001111
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-----------------------------CC--cEEEEEeCc
Q 040255 223 LQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-----------------------------SG--SRVIITTRD 271 (869)
Q Consensus 223 l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-----------------------------~g--srIivTTR~ 271 (869)
....+ ...+......+..+|+|||++ .+ ..||.||..
T Consensus 109 ~~~~~------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 109 KCQAM------------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp HHHHH------------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred HHHHH------------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 11110 011122223567788888863 12 246777877
Q ss_pred hhhhhh---cC-CCeEEEeCCCCH-HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCC------chhHHHHHhhhcCC
Q 040255 272 KQVLKN---CW-ANKKYRMKELVY-ADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGV------PLALKVLGCYLCGR 340 (869)
Q Consensus 272 ~~v~~~---~~-~~~~~~l~~L~~-~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl------PLal~~~g~~L~~~ 340 (869)
...+.. .+ ....+.+++++. ++..+++.... .. ..+....+++.+.|. +-++.++-......
T Consensus 177 ~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 177 KDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp HHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC
T ss_pred hhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc
Confidence 654433 11 246789999988 55555554421 11 134567788888874 23333332222222
Q ss_pred CHHHHHHHHHHHhc
Q 040255 341 SKEVWESAMRKLEI 354 (869)
Q Consensus 341 ~~~~w~~~l~~l~~ 354 (869)
....++.++..+..
T Consensus 250 ~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 250 PEYRVRKFLALLRE 263 (272)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33455555555543
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.5e-05 Score=87.19 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=100.8
Q ss_pred cCcCCcceeccccHHHHHHhh-ccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE-----------------
Q 040255 147 QSKNKGLVGVECSIEEIESLL-CIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA----------------- 208 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~----------------- 208 (869)
|....+++|.+..++.+..++ ..+.. .. +.|+|+.|+||||+|+.++..+...-.+.+.+
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 334467999999999998888 54322 23 89999999999999999998643221111111
Q ss_pred -------EeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCc
Q 040255 209 -------LNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGS 263 (869)
Q Consensus 209 -------~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gs 263 (869)
........... ....++++..+.....-...-.+ ..+.+++-++|||+++ .+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNND-RIVIQELLKEVAQMEQVDFQDSK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EECSSEEEECCC----CC-HHHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred ecccceEEecHhhcCCcc-hHHHHHHHHHHHHhccccccccc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 00000000000 00122222222111000000000 0023467799999997 567
Q ss_pred EEEEEeCchh-hhh-hcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccH-HHHHHHHHHHcCCCchhHHHHH
Q 040255 264 RVIITTRDKQ-VLK-NCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASH-IELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 264 rIivTTR~~~-v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~-~~~~~~i~~~~~GlPLal~~~g 334 (869)
++|++|.+.. +.. .......+++++++.++..+.+...+-..... -. .+....+++.++|.+..+..+.
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888877632 211 11233689999999999999998776322211 11 2556788899999887655443
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.09 E-value=5e-05 Score=81.09 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=92.1
Q ss_pred CCcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC
Q 040255 150 NKGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG 218 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 218 (869)
-++++|.+..+++|.+.+.. +-...+.|.|+|++|+||||||+++++..... ++..
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~v-------- 80 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISI-------- 80 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEEE--------
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEEE--------
Confidence 45689999988888876642 12344678999999999999999999976532 2221
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCcE
Q 040255 219 GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGSR 264 (869)
Q Consensus 219 ~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gsr 264 (869)
+...+.. ...+.....-...+.......+.+|+||+++ .+..
T Consensus 81 ~~~~l~~----~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~ 156 (301)
T 3cf0_A 81 KGPELLT----MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156 (301)
T ss_dssp CHHHHHH----HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE
T ss_pred EhHHHHh----hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE
Confidence 0111221 1111111000122222334567888899886 1345
Q ss_pred EEEEeCchhhhhh-----cCCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCchh
Q 040255 265 VIITTRDKQVLKN-----CWANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVPLA 329 (869)
Q Consensus 265 IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlPLa 329 (869)
||.||.....+.. ......+.++.++.++-.+++....-.... ...+. ..+++.+.|.|-+
T Consensus 157 vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 6777765532211 123467899999999999988776533221 11222 2444556666543
No 191
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.06 E-value=8.9e-05 Score=81.08 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=95.2
Q ss_pred cCCcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC
Q 040255 149 KNKGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG 218 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 218 (869)
.-.+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+..+.....
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~~~ 124 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSKW 124 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHSCC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhhhh
Confidence 346799999999999876621 112234588999999999999999999875332 111111110000
Q ss_pred --CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC--------------------------------CCcE
Q 040255 219 --GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT--------------------------------SGSR 264 (869)
Q Consensus 219 --~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~--------------------------------~gsr 264 (869)
......+.+ +......++.+|+||+++ .+..
T Consensus 125 ~g~~~~~~~~~---------------f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 125 MGESEKLVKQL---------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp ---CHHHHHHH---------------HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred cchHHHHHHHH---------------HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 001111111 111123467888899887 1234
Q ss_pred EEEEeCchh-----hhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHHHH
Q 040255 265 VIITTRDKQ-----VLKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGV-PLALKVLG 334 (869)
Q Consensus 265 IivTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 334 (869)
||.||.... +.. .....+.++..+.++-.+++..++....... .......+++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555665442 222 3446788999999999999988764322111 134456778888874 43444443
No 192
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.06 E-value=9.2e-06 Score=79.60 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=41.4
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
....++||+.+++++.+.+.. ...+.+.|+|++|+||||||+++++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345799999999999998864 33456789999999999999999997644
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=6.7e-07 Score=98.07 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=25.4
Q ss_pred Cccccceecccccccccc-cCccc---cCCCCCCEEecCCCCCCc----ccCCC---CcccceeecccC
Q 040255 602 RLSWVKRLILSNNSNLER-IPESI---RHLSKLTFLFISHCERLQ----TLPEL---PCNLGLLSARNC 659 (869)
Q Consensus 602 ~l~~L~~L~Ls~n~~l~~-lP~~i---~~L~~L~~L~L~~c~~l~----~lp~~---~~~L~~L~l~~c 659 (869)
.+++|+.|+|++| .++. .+..+ ..+++|++|+|+.|.... .++.. +++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 3555666666555 3221 11111 234556666665533211 12222 345566666554
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.02 E-value=1.3e-05 Score=80.01 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=54.7
Q ss_pred CCcceeccc----cHHHHHHhhccCCCC--eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHH
Q 040255 150 NKGLVGVEC----SIEEIESLLCIGSEG--VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDL 223 (869)
Q Consensus 150 ~~~~vGr~~----~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 223 (869)
.+.+++.+. .++.+.+++...... .+.|.|+|++|+||||||+++++....+....+|+.. ..+
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~----------~~~ 93 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV----------PEL 93 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH----------HHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh----------HHH
Confidence 355676543 334445555433222 2678899999999999999999987665445556541 123
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC
Q 040255 224 QKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT 260 (869)
Q Consensus 224 ~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~ 260 (869)
...+....... ....+.+.+... -+|||||++
T Consensus 94 ~~~~~~~~~~~----~~~~~~~~~~~~-~~lilDei~ 125 (202)
T 2w58_A 94 FRELKHSLQDQ----TMNEKLDYIKKV-PVLMLDDLG 125 (202)
T ss_dssp HHHHHHC---C----CCHHHHHHHHHS-SEEEEEEEC
T ss_pred HHHHHHHhccc----hHHHHHHHhcCC-CEEEEcCCC
Confidence 33333222111 122333334333 399999995
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.02 E-value=0.00011 Score=79.05 Aligned_cols=163 Identities=15% Similarity=0.110 Sum_probs=94.7
Q ss_pred cCCcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHHhh-cCccCceEEEEeehhhhcc
Q 040255 149 KNKGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFNKI-SRHFEGSYFALNVREAEET 217 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~~~~s~~ 217 (869)
.-++++|.+..+++|.+.+.. .....+-|.|+|++|+|||+||+++++.. ...| +.+. ..+....
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~~ 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVSK 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHhh
Confidence 346789999888888776531 11234678899999999999999999976 2222 1111 1111000
Q ss_pred --CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC--------------------------------CCc
Q 040255 218 --GGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT--------------------------------SGS 263 (869)
Q Consensus 218 --~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~--------------------------------~gs 263 (869)
.......+.++. ..-..++.+|+||+++ .+-
T Consensus 86 ~~g~~~~~~~~lf~---------------~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 86 WLGESEKLVKNLFQ---------------LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp SCCSCHHHHHHHHH---------------HHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred hhhHHHHHHHHHHH---------------HHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 011122222211 1123567788899987 112
Q ss_pred EEEEEeCchh-----hhhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCc-hhHHHHH
Q 040255 264 RVIITTRDKQ-----VLKNCWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVP-LALKVLG 334 (869)
Q Consensus 264 rIivTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~g 334 (869)
.||.||.... +.. .....+.++..+.++-.+++..+.-...... .......+++.+.|.. -.|..+.
T Consensus 151 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3455665432 222 2346788999999999999988763322111 2345667888888874 3455444
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=9.8e-05 Score=83.31 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=95.5
Q ss_pred CcCCcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc
Q 040255 148 SKNKGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET 217 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 217 (869)
...++++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.... ..|+.. +..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v----~~~ 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSI----SSS 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEE----CCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEE----eHH
Confidence 3447799999999988876621 1123467889999999999999999998621 122221 100
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHH-HccCceEEEecCCC--------------------------------CCcE
Q 040255 218 GGIKDLQKKLLSELSKDGNMRNIESQLNR-LARKKVRIVFDDVT--------------------------------SGSR 264 (869)
Q Consensus 218 ~~~~~l~~~il~~l~~~~~~~~~~~l~~~-L~~kr~LlVLDDv~--------------------------------~gsr 264 (869)
.+.. ...+.. ......+.+. -..++.+|+||+++ .+..
T Consensus 203 ----~l~~----~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 203 ----DLVS----KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp -----------------C-CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred ----HHHh----hhcchH-HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 0100 000100 1112222222 23567889999997 1234
Q ss_pred EEEEeCchhhhhh---cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCC-chhHHHHH
Q 040255 265 VIITTRDKQVLKN---CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGV-PLALKVLG 334 (869)
Q Consensus 265 IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~g 334 (869)
||.||.....+.. -.....+.++..+.++..++|..++...... -.......+++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5656654422111 0234578899999999999998876332211 1134456778888884 43444443
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=2.2e-06 Score=93.98 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCCccCCCCCccEEEecCCCCCcccCcc-ccccchhcccccccc-cCCCCc--CCccccceecccccc-c------cccc
Q 040255 552 LPSSLCTFKTPITFEIIDCKMLERLPDE-LENLEYLTVKGTTIR-ELPESL--GRLSWVKRLILSNNS-N------LERI 620 (869)
Q Consensus 552 lp~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~L~~n~i~-~lP~~i--~~l~~L~~L~Ls~n~-~------l~~l 620 (869)
++..+..+++|+.|+|++|..+ .+|.. +++|+.|+|..|.+. +....+ ..+++|+.|+|+.+. . +..+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 4445566788999999888533 34444 788999999887765 212223 268899999986321 1 2222
Q ss_pred Cccc--cCCCCCCEEecCCCCCCcccC------CCCcccceeecccCCCCcc-----ccCCCCCCccceEEeccCCC
Q 040255 621 PESI--RHLSKLTFLFISHCERLQTLP------ELPCNLGLLSARNCTSLEK-----LPAGLSSMSSVLYVNLCNFL 684 (869)
Q Consensus 621 P~~i--~~L~~L~~L~L~~c~~l~~lp------~~~~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~l~l~~~~ 684 (869)
...+ ..+++|++|+|.+|......+ ..+++|+.|+++.| .++. ++..+.++++|+.|+++.|.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 2222 357899999999876543221 13678999999765 4443 55555677889999988753
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.91 E-value=0.00016 Score=80.27 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=96.3
Q ss_pred CcCCcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc
Q 040255 148 SKNKGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET 217 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 217 (869)
....+++|.+..++.|...+.. .....+-|.|+|.+|+|||+||++++++....| +..+.......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhhcc
Confidence 3456799999999999887731 012246789999999999999999998764332 11111111000
Q ss_pred C--CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC---------------------------------CC
Q 040255 218 G--GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT---------------------------------SG 262 (869)
Q Consensus 218 ~--~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~---------------------------------~g 262 (869)
+ ........++ ...-...+.+|+||+++ ..
T Consensus 188 ~~g~~~~~~~~~~---------------~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 YVGEGEKLVRALF---------------AVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp ----CHHHHHHHH---------------HHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred ccchHHHHHHHHH---------------HHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 0 0011111111 11123455789999995 11
Q ss_pred cEEEEEeCchhhhhh---cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCch-hHHHHH
Q 040255 263 SRVIITTRDKQVLKN---CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPL-ALKVLG 334 (869)
Q Consensus 263 srIivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~g 334 (869)
-.||.||.....+.. -.....+.++..+.++..+++...+-...... ..+....+++.+.|..- ++..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 245556654322110 12335788999999999999987764322221 23456788888888654 554443
No 199
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.87 E-value=0.00017 Score=77.79 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=96.2
Q ss_pred cCcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHH
Q 040255 147 QSKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKK 226 (869)
Q Consensus 147 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 226 (869)
|...++++|.+..++.+.+++..+. ...++.+.|++|+||||+|+++++.+... ...+. ....+...+...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-----~~~~~~~~i~~~ 92 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-----GSDCKIDFVRGP 92 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-----TTTCCHHHHHTH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-----ccccCHHHHHHH
Confidence 3445789999999999999987442 23567788899999999999999987422 12222 112233333222
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-------------------CCcEEEEEeCchh-----hhhhcCCCe
Q 040255 227 LLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-------------------SGSRVIITTRDKQ-----VLKNCWANK 282 (869)
Q Consensus 227 il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-------------------~gsrIivTTR~~~-----v~~~~~~~~ 282 (869)
+........ ..+++-+|++||++ .+.++|+||.... +... ..
T Consensus 93 ~~~~~~~~~-----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~ 158 (324)
T 3u61_B 93 LTNFASAAS-----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CR 158 (324)
T ss_dssp HHHHHHBCC-----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SE
T ss_pred HHHHHhhcc-----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---Cc
Confidence 211111100 12367899999998 3567888887643 2222 25
Q ss_pred EEEeCCCCHHHHHHHH-------HHhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 283 KYRMKELVYADAHKLF-------CQWAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 283 ~~~l~~L~~~ea~~Lf-------~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
.+++++++.++-.+++ ...+....... ...+....+++.++|.+..+.
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHHH
Confidence 7999999988843332 22221111111 112567778888888776443
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00037 Score=76.25 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=93.4
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC-
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG- 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~- 218 (869)
+++.|.+..+++|.+.+.. +-...+=|.++|++|.|||.||++++++....|- .....+....+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~----~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI----RVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE----EEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce----EEEhHHhhcccc
Confidence 5678999999888775532 2234456889999999999999999998765541 11222211111
Q ss_pred -CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCc
Q 040255 219 -GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGS 263 (869)
Q Consensus 219 -~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gs 263 (869)
.-....++++... -...+++|++|+++ .+-
T Consensus 224 Gese~~vr~lF~~A---------------r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 224 GEGSRMVRELFVMA---------------REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp THHHHHHHHHHHHH---------------HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred chHHHHHHHHHHHH---------------HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 1223333333322 12456777777776 233
Q ss_pred EEEEEeCchhhh-----hhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 040255 264 RVIITTRDKQVL-----KNCWANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 264 rIivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 327 (869)
.||.||...+.+ ..-..+..++++..+.++-.++|..+.-+-.. ...++ ..+++.+.|.-
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 456677654332 21235678999999999999999877633221 12233 45667777754
No 201
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.75 E-value=0.00021 Score=76.37 Aligned_cols=131 Identities=10% Similarity=0.025 Sum_probs=78.2
Q ss_pred cceeccccHHHHHHhhccC-------------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccC--ceEEEE-eehhhh
Q 040255 152 GLVGVECSIEEIESLLCIG-------------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFE--GSYFAL-NVREAE 215 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~-~~~~~s 215 (869)
.++|.+..++.|.+++... ......|.|+|++|+|||++|+++++.+..... ...++. +.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4888888888887665421 233456889999999999999999986643211 112222 111110
Q ss_pred cc-C-CHHHHHHHHHHHhhcCCCCCCHHHHHHHH-ccCceEEEecCCC---------------------------CCcEE
Q 040255 216 ET-G-GIKDLQKKLLSELSKDGNMRNIESQLNRL-ARKKVRIVFDDVT---------------------------SGSRV 265 (869)
Q Consensus 216 ~~-~-~~~~l~~~il~~l~~~~~~~~~~~l~~~L-~~kr~LlVLDDv~---------------------------~gsrI 265 (869)
.. . ... ..+...+ ..+.-+|+||+++ .+..|
T Consensus 112 ~~~~g~~~-------------------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 112 GQYIGHTA-------------------PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp CSSTTCHH-------------------HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred hhcccccH-------------------HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 00 0 011 1111111 1134588899885 24577
Q ss_pred EEEeCchh----------hhhhcCCCeEEEeCCCCHHHHHHHHHHhhc
Q 040255 266 IITTRDKQ----------VLKNCWANKKYRMKELVYADAHKLFCQWAF 303 (869)
Q Consensus 266 ivTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af 303 (869)
|.||.... +... ....+.+++++.++-.+++...+-
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 77875432 2222 236899999999999999987764
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.74 E-value=0.00019 Score=81.68 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=94.1
Q ss_pred CcceeccccHHHHHHhhccC-----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc-C
Q 040255 151 KGLVGVECSIEEIESLLCIG-----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET-G 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~ 218 (869)
..++|.+..+++|.+++... ....+-|.|+|++|+|||++|++++++....| +.+ +..+.... .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~v-n~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEE-EHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEE-EchHhhhhhc
Confidence 56899999999998877531 23345688999999999999999998764332 112 11111111 1
Q ss_pred CH-HHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-------------------------------CCcEEE
Q 040255 219 GI-KDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-------------------------------SGSRVI 266 (869)
Q Consensus 219 ~~-~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-------------------------------~gsrIi 266 (869)
+. .... ...+.....+++.+|+||+++ .+-+||
T Consensus 280 g~~~~~~---------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 280 GESESNL---------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp THHHHHH---------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred chhHHHH---------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 00 0111 112223334567789999983 234566
Q ss_pred EEeCchhh-----hhhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHHcCCC-chhHHHH
Q 040255 267 ITTRDKQV-----LKNCWANKKYRMKELVYADAHKLFCQWAFGGDHL-DASHIELTDKAIKYAQGV-PLALKVL 333 (869)
Q Consensus 267 vTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~Gl-PLal~~~ 333 (869)
.||..... .........+.++..+.++-.+++..++-..... ...+ .++++.+.|. +-.+..+
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 67765432 1112234578999999999999998876332211 1122 4555666664 4334433
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=7.2e-05 Score=73.17 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=42.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccC-ceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCce
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFE-GSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKV 252 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~ 252 (869)
-..+.|+|++|+||||||+++++.+..... .+.++. ...+...+.......... .+.+.+. +.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~ 102 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDEGKDT----KFLKTVL-NSP 102 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHHTCCS----HHHHHHH-TCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcCchHH----HHHHHhc-CCC
Confidence 467899999999999999999997642111 233333 223333333333222111 2222333 456
Q ss_pred EEEecCCC
Q 040255 253 RIVFDDVT 260 (869)
Q Consensus 253 LlVLDDv~ 260 (869)
+|||||++
T Consensus 103 llilDE~~ 110 (180)
T 3ec2_A 103 VLVLDDLG 110 (180)
T ss_dssp EEEEETCS
T ss_pred EEEEeCCC
Confidence 89999996
No 204
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.71 E-value=4.9e-05 Score=71.60 Aligned_cols=47 Identities=21% Similarity=0.137 Sum_probs=35.9
Q ss_pred cceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 152 GLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+++|++..++++.+.+..-...-.-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988775422223447899999999999999999854
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00053 Score=76.17 Aligned_cols=154 Identities=17% Similarity=0.242 Sum_probs=93.6
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC-
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG- 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~- 218 (869)
+++.|.+..+++|.+.+.. +-...+=|.++|++|.|||+||+++++.....| +.....+....+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKYI 256 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccccc
Confidence 5678999999888776532 223456788999999999999999999876543 222222221111
Q ss_pred C-HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCc
Q 040255 219 G-IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGS 263 (869)
Q Consensus 219 ~-~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gs 263 (869)
+ .....+.++.. .-...+++|++|+++ .+.
T Consensus 257 Gese~~ir~~F~~---------------A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 257 GESARIIREMFAY---------------AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp SHHHHHHHHHHHH---------------HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred hHHHHHHHHHHHH---------------HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 1 12222332222 123467788888886 233
Q ss_pred EEEEEeCchhhhhhc-----CCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 040255 264 RVIITTRDKQVLKNC-----WANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 264 rIivTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 327 (869)
.||.||-....+... ..+..++++..+.++-.++|..+.-+-.. ...++ ..+++.+.|.-
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 567777655443221 13567889999999999999877643221 22233 45666777654
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.68 E-value=0.00067 Score=73.63 Aligned_cols=166 Identities=11% Similarity=0.151 Sum_probs=97.7
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc-cCceEEEEeehhhhccCCHHHHHHHH
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH-FEGSYFALNVREAEETGGIKDLQKKL 227 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~i 227 (869)
....++|.+..++.|...+..+ +...+.++|+.|+||||+|+.+++.+... +... ++. .. .+...+...+...
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~~-~~-~~~~~~~~~ir~~- 96 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM-VLE-LN-ASDDRGIDVVRNQ- 96 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH-EEE-EC-TTSCCSHHHHHTH-
T ss_pred cHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccce-EEE-Ec-CcccccHHHHHHH-
Confidence 3456889888888888888754 33338899999999999999999976432 2211 111 10 1122233333221
Q ss_pred HHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCchh-hhh-hcCCCeEEEeC
Q 040255 228 LSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDKQ-VLK-NCWANKKYRMK 287 (869)
Q Consensus 228 l~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~~-v~~-~~~~~~~~~l~ 287 (869)
+..+..... ...+.+-++|+|+++ ...++|++|.... +.. .......+++.
T Consensus 97 i~~~~~~~~---------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 97 IKDFASTRQ---------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQ 167 (340)
T ss_dssp HHHHHHBCC---------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred HHHHHhhcc---------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEecc
Confidence 111110000 011346788999986 3557777765432 111 11223578999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHH
Q 040255 288 ELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALK 331 (869)
Q Consensus 288 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 331 (869)
+++.++..+.+...+-..... -..+..+.+++.++|.+--+.
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 168 PLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp CCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 999999988887665322211 123567788899999887443
No 207
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.68 E-value=0.00058 Score=73.89 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=90.6
Q ss_pred cHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccC---------------------ceEEEEeehhhhcc
Q 040255 159 SIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFE---------------------GSYFALNVREAEET 217 (869)
Q Consensus 159 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~~~~~s~~ 217 (869)
..+.+...+..+ .-...+.++|+.|+||||+|+++++.+..... ...++... +.+..
T Consensus 10 ~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~~~ 87 (334)
T 1a5t_A 10 DFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGKNT 87 (334)
T ss_dssp HHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC-TTCSS
T ss_pred HHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-ccCCC
Confidence 345555555432 22356889999999999999999997643221 11122100 00011
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCchh-hhhh-
Q 040255 218 GGIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDKQ-VLKN- 277 (869)
Q Consensus 218 ~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~~-v~~~- 277 (869)
.++..+. ++...+.... ..+++-++|+|+++ ++..+|++|.+.. +...
T Consensus 88 ~~i~~ir-~l~~~~~~~~-----------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 88 LGVDAVR-EVTEKLNEHA-----------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp BCHHHHH-HHHHHTTSCC-----------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred CCHHHHH-HHHHHHhhcc-----------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 2222221 2222221110 12467789999998 3466677776543 2221
Q ss_pred cCCCeEEEeCCCCHHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHcCCCchhHHHHH
Q 040255 278 CWANKKYRMKELVYADAHKLFCQWAFGGDHLDASHIELTDKAIKYAQGVPLALKVLG 334 (869)
Q Consensus 278 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~~g 334 (869)
......+++++++.++..+.+...+ . -..+.+..+++.++|.|..+..+.
T Consensus 156 ~SRc~~~~~~~~~~~~~~~~L~~~~----~---~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 156 RSRCRLHYLAPPPEQYAVTWLSREV----T---MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHC----C---CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred hhcceeeeCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 1334689999999999999988775 1 113456788999999997665543
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.64 E-value=0.00026 Score=86.77 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=41.2
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...+.++||+.+++++...|.... .+-+.|+|.+|+||||||+.+++++.
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 345679999999999999886532 33468999999999999999999764
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.63 E-value=0.00066 Score=70.43 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=38.1
Q ss_pred cCCcceeccccHHHHHHhhcc---C-------CCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 149 KNKGLVGVECSIEEIESLLCI---G-------SEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..++++|.+..++++.+++.. . ....+-|.|+|++|+||||||+++++.....
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 446789998888777665421 0 1123348899999999999999999976543
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=9e-06 Score=80.20 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=59.7
Q ss_pred ccceeeecCCC-cccccccccccCCCccCCCCCccEEEecCCCCCcc-----cCcc---ccccchhccccccccc-----
Q 040255 530 EKLVSLKMPCT-KVEQLWDDVQRLPSSLCTFKTPITFEIIDCKMLER-----LPDE---LENLEYLTVKGTTIRE----- 595 (869)
Q Consensus 530 ~~L~~L~L~~n-~l~~l~~~~~~lp~~~~~l~~L~~L~L~~~~~l~~-----lp~~---l~~L~~L~L~~n~i~~----- 595 (869)
..|++|+|++| .+.. .+...+...+...++|++|+|++|. ++. +... .++|++|+|++|.|+.
T Consensus 36 ~~L~~L~L~~n~~i~~--~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPV--PTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCCEEECTTCTTCCH--HHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred CCCCEEEecCCCCCCH--HHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34555555555 4432 1223333345556677777777776 432 1111 3456677777766652
Q ss_pred CCCCcCCccccceecc--cccccccc-----cCccccCCCCCCEEecCCCC
Q 040255 596 LPESLGRLSWVKRLIL--SNNSNLER-----IPESIRHLSKLTFLFISHCE 639 (869)
Q Consensus 596 lP~~i~~l~~L~~L~L--s~n~~l~~-----lP~~i~~L~~L~~L~L~~c~ 639 (869)
+...+...++|++|+| ++| .++. +...+...++|+.|+|++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4455556667777777 666 5543 33445566777777777654
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00086 Score=74.34 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=92.9
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhcc-C
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEET-G 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~-~ 218 (869)
.++.|.+..+++|.+.+.. +-...+=|.++|++|.|||+||++++++....|- .....+.... .
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi----~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI----RVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE----EEEhHHhhcccC
Confidence 5688999999888775421 2244567889999999999999999998765432 1112221111 1
Q ss_pred C-HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCc
Q 040255 219 G-IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGS 263 (869)
Q Consensus 219 ~-~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gs 263 (869)
+ -....+.++... -...+++|++|+++ .+-
T Consensus 285 Gesek~ir~lF~~A---------------r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 285 GEGARMVRELFEMA---------------RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp SHHHHHHHHHHHHH---------------HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred CHHHHHHHHHHHHH---------------HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 1 122333333221 23456788888886 222
Q ss_pred EEEEEeCchhhh-----hhcCCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 040255 264 RVIITTRDKQVL-----KNCWANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 264 rIivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 327 (869)
.||.||-....+ ..-..+..++++..+.++-.++|..+.-+-.. ...++ ..+++.+.|.-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 456666544332 11135678999999999999999877633221 12233 45667777753
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00062 Score=75.48 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=40.7
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
+++.|.+..+++|.+.+.. +-...+=|.++|++|.|||+||+++++.....|
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5678999999888776532 224456688999999999999999999876543
No 213
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00047 Score=76.51 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=91.0
Q ss_pred CCcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC
Q 040255 150 NKGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG 218 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 218 (869)
-+++.|.+..+++|.+.+.. +-...+=|.++|++|.|||+||++++++....| +.....+....+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhcc
Confidence 36789999999888765421 223456788999999999999999999876543 221222221111
Q ss_pred -C-HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CC
Q 040255 219 -G-IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SG 262 (869)
Q Consensus 219 -~-~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~g 262 (869)
+ -....+.++... -...+++|++|+++ .+
T Consensus 256 vGese~~ir~lF~~A---------------~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 256 IGEGAKLVRDAFALA---------------KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp SSHHHHHHHHHHHHH---------------HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred cchHHHHHHHHHHHH---------------HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 1 123333333221 12346677777775 22
Q ss_pred cEEEEEeCchhhhhh-----cCCCeEEEeCCCCHHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHHcCCC
Q 040255 263 SRVIITTRDKQVLKN-----CWANKKYRMKELVYADAHKLFCQWAFGGD-HLDASHIELTDKAIKYAQGV 326 (869)
Q Consensus 263 srIivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~Gl 326 (869)
--||.||...+.+.. -..+..++++..+.++-.++|..+.-+-. ....++ ..+++.+.|.
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 245557765544321 12456789999999999999876653222 122233 4556667665
No 214
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.53 E-value=3.9e-05 Score=72.12 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=34.4
Q ss_pred cceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 152 GLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 578999999888887653112223477999999999999999987643
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00069 Score=74.36 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=92.1
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC-
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG- 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~- 218 (869)
+++.|.+..+++|.+.+.. +-...+=|.++|++|.|||.||++++++....|- .....+....+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEEHHHhhhccC
Confidence 5678999998888775532 2234566889999999999999999998765432 11222221111
Q ss_pred -CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCc
Q 040255 219 -GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGS 263 (869)
Q Consensus 219 -~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gs 263 (869)
......+.++... -...+++|++|+++ .+-
T Consensus 258 Gesek~ir~lF~~A---------------r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V 322 (437)
T 4b4t_I 258 GDGPRLCRQIFKVA---------------GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322 (437)
T ss_dssp SHHHHHHHHHHHHH---------------HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE
T ss_pred chHHHHHHHHHHHH---------------HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE
Confidence 1223333333322 12456777777776 233
Q ss_pred EEEEEeCchhhhhhc-----CCCeEEEeCCCCHHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHHcCCCc
Q 040255 264 RVIITTRDKQVLKNC-----WANKKYRMKELVYADAHKLFCQWAFGGDH-LDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 264 rIivTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~af~~~~-~~~~~~~~~~~i~~~~~GlP 327 (869)
.||.||-..+.+... ..+..+.++..+.++-.++|..+.-+-.. ...++ ..+++.+.|.-
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 456677655443321 23457889999999999999877633221 12233 35566666653
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.47 E-value=0.00026 Score=73.83 Aligned_cols=49 Identities=22% Similarity=0.089 Sum_probs=34.8
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999998888776643222234577999999999999999998654
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.45 E-value=0.00096 Score=80.73 Aligned_cols=137 Identities=18% Similarity=0.213 Sum_probs=82.7
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc------cCceEEEEeehhhh----ccC
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH------FEGSYFALNVREAE----ETG 218 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~s----~~~ 218 (869)
..+.++||+.+++++.+.|... ...-+.|+|.+|+||||+|+.+++++... ....+|..+..... ...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 4467999999999999988754 23446799999999999999999976321 23333332221110 011
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-------------------------CCcEEEEEeCchh
Q 040255 219 GIKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-------------------------SGSRVIITTRDKQ 273 (869)
Q Consensus 219 ~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-------------------------~gsrIivTTR~~~ 273 (869)
......+.++..+ -..++.+|++||++ .+-++|.+|....
T Consensus 262 ~~e~~l~~~~~~~---------------~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 262 DFEKRFKALLKQL---------------EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_dssp CHHHHHHHHHHHH---------------SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHH
T ss_pred hHHHHHHHHHHHH---------------HhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchH
Confidence 1222222222211 12356889999996 2345666665443
Q ss_pred hhhhc-------CCCeEEEeCCCCHHHHHHHHHHhh
Q 040255 274 VLKNC-------WANKKYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 274 v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 302 (869)
..... .....+.++.++.++..+++...+
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 21111 112368999999999988887544
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.00084 Score=71.67 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=37.9
Q ss_pred cceeccccHHHHHHhhccCC-------CCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 152 GLVGVECSIEEIESLLCIGS-------EGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.++|.+..++.+...+.... .....+.|+|++|+||||+|+++++....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 47888888888877665321 12357999999999999999999997644
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.43 E-value=0.0024 Score=72.03 Aligned_cols=155 Identities=18% Similarity=0.149 Sum_probs=89.5
Q ss_pred CCcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccC-
Q 040255 150 NKGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETG- 218 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~- 218 (869)
.++++|.+..++++.+++.. +..-.+-|.|+|++|.||||||++++++....|- .+. ..+....+
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~---~is-~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFF---HIS-GSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE---EEE-GGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCee---eCC-HHHHHHHHh
Confidence 35689999888777765431 1111234789999999999999999997654331 121 11111111
Q ss_pred CH-HHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC----------------------------------CCc
Q 040255 219 GI-KDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT----------------------------------SGS 263 (869)
Q Consensus 219 ~~-~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~----------------------------------~gs 263 (869)
+. ..-.+ ..+.......+.+|+||+++ .+-
T Consensus 91 g~~~~~~r---------------~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 91 GVGAARVR---------------DLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp THHHHHHH---------------HHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred cccHHHHH---------------HHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 11 00011 12223334567788888884 123
Q ss_pred EEEEEeCchhhhhh--c---CCCeEEEeCCCCHHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHHcCCCc
Q 040255 264 RVIITTRDKQVLKN--C---WANKKYRMKELVYADAHKLFCQWAFGGDHL-DASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 264 rIivTTR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlP 327 (869)
.||.||...+.+.. . .....+.++..+.++-.+++..++-..... ..+ ...+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 56667766544321 1 234578899999888888887766332211 112 234677778876
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.41 E-value=0.00086 Score=71.41 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=37.4
Q ss_pred cceeccccHHHHHHhhcc------------CCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 152 GLVGVECSIEEIESLLCI------------GSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.++|.+..++.+...+.. .......+.|+|++|+|||++|+++++....
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 488998888888776643 0112346789999999999999999997743
No 221
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.41 E-value=0.00073 Score=76.66 Aligned_cols=135 Identities=10% Similarity=0.082 Sum_probs=78.6
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-----CceEEEE-eehhhhccCCHHH
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF-----EGSYFAL-NVREAEETGGIKD 222 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~-~~~~~s~~~~~~~ 222 (869)
..+.+|||+.+++.+...|.... ..-+.|+|++|+|||+||+.+++.+...+ ...-++. +..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 34679999999999999987532 23457999999999999999999874432 1222221 110
Q ss_pred HHHHHHHHhhcCCCCCCHH-HHHHHHccCceEEEecCCC-----------CC-cEEEEEeCchhhh---hh----cCCCe
Q 040255 223 LQKKLLSELSKDGNMRNIE-SQLNRLARKKVRIVFDDVT-----------SG-SRVIITTRDKQVL---KN----CWANK 282 (869)
Q Consensus 223 l~~~il~~l~~~~~~~~~~-~l~~~L~~kr~LlVLDDv~-----------~g-srIivTTR~~~v~---~~----~~~~~ 282 (869)
....+. ...... .+...-..++.+|++|.-. .| -++|.||...... .. .....
T Consensus 246 ------~~~~g~-~e~~~~~~~~~~~~~~~~iLfiD~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~ 318 (468)
T 3pxg_A 246 ------TKYRGE-FEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred ------ccccch-HHHHHHHHHHHHHhcCCeEEEEeCchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCc
Confidence 000000 001111 2222223567888888211 23 4566555544311 10 01224
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 040255 283 KYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 283 ~~~l~~L~~~ea~~Lf~~~a 302 (869)
.+.++.++.++..+++...+
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTT
T ss_pred cceeCCCCHHHHHHHHHHHH
Confidence 68999999999999998655
No 222
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.39 E-value=0.0074 Score=65.13 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=39.4
Q ss_pred cCCcceeccccHHHHHHhhccC---CCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 149 KNKGLVGVECSIEEIESLLCIG---SEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..+.++|.+..++.+...+..+ ......+.|+|++|+||||||+.+++.+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456889887777777666432 233467899999999999999999997744
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.39 E-value=8e-05 Score=77.93 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=39.8
Q ss_pred cCCcceeccccHHHHHHhhcc----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 149 KNKGLVGVECSIEEIESLLCI----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
..++++|.+..++++.+.+.. +....+-|.|+|++|+|||+||++++++....|
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 346799999998888876641 111123377999999999999999999765443
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.35 E-value=0.0014 Score=78.19 Aligned_cols=154 Identities=15% Similarity=0.178 Sum_probs=91.5
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhh-hccC
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREA-EETG 218 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~-s~~~ 218 (869)
+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||++++++...+| +..+..+. +...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhcccc
Confidence 5678999999888876532 113456788999999999999999999876443 22221111 1111
Q ss_pred C-HHHHHHHHHHHhhcCCCCCCHHHHHHHHccCceEEEecCCC-------------------------------CCcEEE
Q 040255 219 G-IKDLQKKLLSELSKDGNMRNIESQLNRLARKKVRIVFDDVT-------------------------------SGSRVI 266 (869)
Q Consensus 219 ~-~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr~LlVLDDv~-------------------------------~gsrIi 266 (869)
+ .....+.++. ......+.+|++|+++ .+--||
T Consensus 280 gese~~lr~lF~---------------~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 280 GESESNLRKAFE---------------EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp THHHHHHHHHHH---------------HHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred hHHHHHHHHHHH---------------HHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1 1122222222 2224567888888887 122345
Q ss_pred EEeCchhhhh-h----cCCCeEEEeCCCCHHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHHcCCCc
Q 040255 267 ITTRDKQVLK-N----CWANKKYRMKELVYADAHKLFCQWAFGGD-HLDASHIELTDKAIKYAQGVP 327 (869)
Q Consensus 267 vTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlP 327 (869)
.||...+.+. . ......++++..+.++-.++|..+.-+.. ....+ ...+++.+.|.-
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 5665443321 1 12456789999999999999887653221 11222 345667777764
No 225
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.32 E-value=0.00018 Score=67.95 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=26.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
-..++|+|..|.||||||+.++..+...=...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 457899999999999999999997654211145554
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.31 E-value=9.9e-05 Score=76.74 Aligned_cols=14 Identities=0% Similarity=0.235 Sum_probs=8.3
Q ss_pred CCCCccEEEecCCC
Q 040255 558 TFKTPITFEIIDCK 571 (869)
Q Consensus 558 ~l~~L~~L~L~~~~ 571 (869)
++++|+.|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~ 181 (267)
T 3rw6_A 168 NIPELLSLNLSNNR 181 (267)
T ss_dssp HCTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCC
Confidence 45566666666665
No 227
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.28 E-value=0.00043 Score=73.79 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=37.5
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999888775422233457799999999999999999854
No 228
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.25 E-value=0.00041 Score=74.08 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=37.2
Q ss_pred Ccceecc----ccHHHHHHhhccCCC-CeEEEEEEecCCchHHHHHHHHHHhhc-CccCceEEEE
Q 040255 151 KGLVGVE----CSIEEIESLLCIGSE-GVCKLRIWGIGGISKITIAGAVFNKIS-RHFEGSYFAL 209 (869)
Q Consensus 151 ~~~vGr~----~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 209 (869)
+.|++.+ ..++.+.+++..... ....+.|+|.+|+|||+||+++++... ..-..+.++.
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4555433 233344455543222 246788999999999999999999766 4433444554
No 229
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00016 Score=75.13 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=35.2
Q ss_pred ccccchhcccccccccC---CCCcCCccccceecccccccccccCccccCCC--CCCEEecCCCCCCcccC
Q 040255 580 LENLEYLTVKGTTIREL---PESLGRLSWVKRLILSNNSNLERIPESIRHLS--KLTFLFISHCERLQTLP 645 (869)
Q Consensus 580 l~~L~~L~L~~n~i~~l---P~~i~~l~~L~~L~Ls~n~~l~~lP~~i~~L~--~L~~L~L~~c~~l~~lp 645 (869)
+++|+.|+|++|.|+.+ |..++.+++|+.|+|++| .+..+. .+..++ +|+.|+|++|+..+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 45566666666666543 234445666666666666 555542 233333 66666666655544444
No 230
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.20 E-value=0.0027 Score=67.56 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=79.5
Q ss_pred eccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc---CccCceEEEEeehhhhccCCHHHHHHHHHHHh
Q 040255 155 GVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS---RHFEGSYFALNVREAEETGGIKDLQKKLLSEL 231 (869)
Q Consensus 155 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l 231 (869)
|-++.++.|.+.+..+. .....++|++|.||||+|+++.+... ........+.. .....++..+.. +....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~---~~~~~~id~ir~-li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP---EGENIGIDDIRT-IKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC---SSSCBCHHHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC---CcCCCCHHHHHH-HHHHH
Confidence 34555677777776543 67888999999999999999987531 11222333321 111234444333 33333
Q ss_pred hcCCCCCCHHHHHHHHccCceEEEecCCC------------------CCcEEEEEeCch-hhhhhcCCCeEEEeCCCCHH
Q 040255 232 SKDGNMRNIESQLNRLARKKVRIVFDDVT------------------SGSRVIITTRDK-QVLKNCWANKKYRMKELVYA 292 (869)
Q Consensus 232 ~~~~~~~~~~~l~~~L~~kr~LlVLDDv~------------------~gsrIivTTR~~-~v~~~~~~~~~~~l~~L~~~ 292 (869)
.... ..+++-++|+|+++ +.+.+|++|.+. .+....... .+++++++.+
T Consensus 75 ~~~p-----------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 75 NYSP-----------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp TSCC-----------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred hhcc-----------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 2111 12456788999998 456777666443 344333333 8999999999
Q ss_pred HHHHHHHHhh
Q 040255 293 DAHKLFCQWA 302 (869)
Q Consensus 293 ea~~Lf~~~a 302 (869)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887765
No 231
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.09 E-value=0.00017 Score=69.59 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=21.0
Q ss_pred ccceecccccccccccC-ccccCCCCCCEEecCCCCCCc
Q 040255 605 WVKRLILSNNSNLERIP-ESIRHLSKLTFLFISHCERLQ 642 (869)
Q Consensus 605 ~L~~L~Ls~n~~l~~lP-~~i~~L~~L~~L~L~~c~~l~ 642 (869)
+|++|+|++|..++.-- ..+.++++|++|+|++|..++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 56666666664443310 124556666666666665544
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.06 E-value=0.0027 Score=76.77 Aligned_cols=135 Identities=11% Similarity=0.086 Sum_probs=79.5
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc------CceEEEEeehhhhccCCHHH
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF------EGSYFALNVREAEETGGIKD 222 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~~~ 222 (869)
..+.+|||+.+++++...|.... ..-+.++|++|+|||++|+.+++.+.... ...++..+. +
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------g--- 245 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------G--- 245 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------c---
Confidence 44679999999999999987532 23467999999999999999999863321 122221111 0
Q ss_pred HHHHHHHHhhcCCCCCC-HHHHHHHHccCceEEEecCCC------------CCcEEEEEeCchhhhhh-------cCCCe
Q 040255 223 LQKKLLSELSKDGNMRN-IESQLNRLARKKVRIVFDDVT------------SGSRVIITTRDKQVLKN-------CWANK 282 (869)
Q Consensus 223 l~~~il~~l~~~~~~~~-~~~l~~~L~~kr~LlVLDDv~------------~gsrIivTTR~~~v~~~-------~~~~~ 282 (869)
....+ ..... ...+......++.+|++|.-. ..-++|.||........ .....
T Consensus 246 ------~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~ 318 (758)
T 3pxi_A 246 ------TKYRG-EFEDRLKKVMDEIRQAGNIILFIDAAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQ 318 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEE
T ss_pred ------ccccc-hHHHHHHHHHHHHHhcCCEEEEEcCchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCc
Confidence 00000 00111 122222334567888998321 33566666654431110 01225
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 040255 283 KYRMKELVYADAHKLFCQWA 302 (869)
Q Consensus 283 ~~~l~~L~~~ea~~Lf~~~a 302 (869)
.+.++.++.++..+++...+
T Consensus 319 ~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 319 PIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EEECCCCCHHHHHHHHHHTT
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 78999999999999998654
No 233
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.06 E-value=0.0056 Score=63.17 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=34.6
Q ss_pred cCCcceeccccHHHHHHhhcc--C-------C-CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 149 KNKGLVGVECSIEEIESLLCI--G-------S-EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..++++|.+..+.++..+... . + .-.+-+.|+|++|+||||||++++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678887766666554321 0 0 0011289999999999999999998765
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.02 E-value=0.0017 Score=68.77 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=24.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..+.+.++|++|+|||+||+++++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34678899999999999999999987543
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.99 E-value=0.0085 Score=62.62 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.8
Q ss_pred EEEEecCCchHHHHHHHHHHhhcC
Q 040255 177 LRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 177 v~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
++|+|++|.||||||++++.....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 899999999999999999997654
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.95 E-value=0.002 Score=77.90 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=38.6
Q ss_pred CcceeccccHHHHHHhhccCC-------CCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 151 KGLVGVECSIEEIESLLCIGS-------EGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 468999998888877765311 22347899999999999999999997633
No 237
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.93 E-value=0.00057 Score=66.00 Aligned_cols=83 Identities=11% Similarity=0.229 Sum_probs=41.2
Q ss_pred ccceeccccccccccc-CccccCCCCCCEEecCCCCCCcc-----cCCC---CcccceeecccCCCCcccc-CCCCCCcc
Q 040255 605 WVKRLILSNNSNLERI-PESIRHLSKLTFLFISHCERLQT-----LPEL---PCNLGLLSARNCTSLEKLP-AGLSSMSS 674 (869)
Q Consensus 605 ~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L~L~~c~~l~~-----lp~~---~~~L~~L~l~~c~~l~~lp-~~~~~l~~ 674 (869)
.|+.|||++| .++.. -..+..+++|+.|+|++|..++. |... .++|+.|++++|+.++.-- ..+.++++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4555555555 23221 11244555666666666654332 2221 1256666666666544211 12345667
Q ss_pred ceEEeccCCCCCCc
Q 040255 675 VLYVNLCNFLKLDP 688 (869)
Q Consensus 675 L~~l~l~~~~~~~~ 688 (869)
|+.|++++|+....
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777665543
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.92 E-value=0.0029 Score=76.54 Aligned_cols=52 Identities=23% Similarity=0.357 Sum_probs=41.3
Q ss_pred CcceeccccHHHHHHhhcc-----------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 151 KGLVGVECSIEEIESLLCI-----------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
++++|.+..+++|.+++.. +-.....|.|+|.+|+||||||++++......|
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~ 266 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE
Confidence 6789999999999887753 123345689999999999999999998765443
No 239
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.92 E-value=0.01 Score=62.17 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=36.4
Q ss_pred CcCCcceeccccHHHHHHhhcc--C-------C-CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 148 SKNKGLVGVECSIEEIESLLCI--G-------S-EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...++++|.+..++++..+... . + .-.+-|.|+|++|+||||||++++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 3346788988877777654421 0 0 0011288999999999999999999765
No 240
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.90 E-value=0.0066 Score=67.11 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=30.8
Q ss_pred eecccccccCCcceEEEEcCCCCccccCcCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCC
Q 040255 475 HMNSYAFSKMPKLRFLRFYGDKNKCMVSHLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPC 539 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~~~~~~~~~~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~ 539 (869)
.+...+|.++++|+.+.+.++. ..++.+...-. .+|+.+.+..+ ++.+ +.....|..+.++.
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c-~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGC-GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTC-TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccchhhhcccCCCcEEecCCcc-ceeccccccCC-CCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 3455677777777777775432 22333222211 35666665543 3322 33344555555443
No 241
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.89 E-value=0.00026 Score=69.60 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=47.2
Q ss_pred cccccCCcceEEEEcCC-CCcc-----ccCcCCCCCCCCeeEEecCCCCCCcc--------ccccccceeeecCCCcccc
Q 040255 479 YAFSKMPKLRFLRFYGD-KNKC-----MVSHLEGVPFAEVRHLEWPQCPLKTL--------NICAEKLVSLKMPCTKVEQ 544 (869)
Q Consensus 479 ~~f~~l~~Lr~L~l~~~-~~~~-----~~~~l~~l~~~~L~~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~ 544 (869)
..+...++|+.|++++| .... +...+...+ +|++|++++|.+..- .....+|++|+|++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~--~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT--YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC--SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC--CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34566778888888775 4322 233344433 677777777766532 1223456666666666542
Q ss_pred cccccccCCCccCCCCCccEEEe--cCCC
Q 040255 545 LWDDVQRLPSSLCTFKTPITFEI--IDCK 571 (869)
Q Consensus 545 l~~~~~~lp~~~~~l~~L~~L~L--~~~~ 571 (869)
.+...+...+...++|++|+| ++|.
T Consensus 108 --~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 108 --SGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp --HHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred --HHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 122233334444555666666 4444
No 242
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.79 E-value=0.017 Score=63.73 Aligned_cols=133 Identities=12% Similarity=0.193 Sum_probs=72.5
Q ss_pred eeeecccccccCCcceEEEEcCCCCccccC-cCCCCCCCCeeEEecCCCCCCcc----ccccccceeeecCCCccccc--
Q 040255 473 EIHMNSYAFSKMPKLRFLRFYGDKNKCMVS-HLEGVPFAEVRHLEWPQCPLKTL----NICAEKLVSLKMPCTKVEQL-- 545 (869)
Q Consensus 473 ~~~~~~~~f~~l~~Lr~L~l~~~~~~~~~~-~l~~l~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l-- 545 (869)
...+...+|.++.+|+.+.+..+ ...+.. .+.... +|+.+.+..+ ++.+ +..+.+|..+.++.+ ++.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~--~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCS--KLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCT--TCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCC--CCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 34577788888888888888642 233333 233333 7888877654 4443 344555665555432 1111
Q ss_pred -------------ccccccCC-CccCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccC-CCCcCCcccc
Q 040255 546 -------------WDDVQRLP-SSLCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIREL-PESLGRLSWV 606 (869)
Q Consensus 546 -------------~~~~~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~l-P~~i~~l~~L 606 (869)
+.....+. ..+.++++|+.+.+.++ +..++.. ..+|+.+.+..+ ++.+ ...+.++..|
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 11111111 25677888888888653 4555554 456777777554 3433 2234445555
Q ss_pred ceecccc
Q 040255 607 KRLILSN 613 (869)
Q Consensus 607 ~~L~Ls~ 613 (869)
+.+.+..
T Consensus 211 ~~i~~~~ 217 (394)
T 4fs7_A 211 ENMEFPN 217 (394)
T ss_dssp CBCCCCT
T ss_pred ceeecCC
Confidence 5555443
No 243
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.29 E-value=0.0064 Score=68.67 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=39.2
Q ss_pred CCcceeccccHHHHHHhh---ccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 150 NKGLVGVECSIEEIESLL---CIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.+.++|.+..++.+..++ ..+....+-+.++|++|+|||+||+++++.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 367999998887665544 3333333568899999999999999999987643
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.28 E-value=0.018 Score=65.29 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=36.9
Q ss_pred cCCcceeccccHHHHHHhhcc--CC--------CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 149 KNKGLVGVECSIEEIESLLCI--GS--------EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..++++|.+..+.++.++... .. .-.+-|.|+|++|.||||||++++....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789998887777665421 10 1112389999999999999999999765
No 245
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.27 E-value=0.021 Score=65.77 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=36.2
Q ss_pred cceeccccHHHHHHhhcc----CCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 152 GLVGVECSIEEIESLLCI----GSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
+++|.+...+.+.+.+.. ....-..+.|+|++|+||||||+.++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 478887777666544321 11234579999999999999999999977544
No 246
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.05 E-value=0.06 Score=59.30 Aligned_cols=20 Identities=20% Similarity=0.271 Sum_probs=14.7
Q ss_pred eecccccccCCcceEEEEcC
Q 040255 475 HMNSYAFSKMPKLRFLRFYG 494 (869)
Q Consensus 475 ~~~~~~f~~l~~Lr~L~l~~ 494 (869)
.+...+|.++++|+.+.+..
T Consensus 77 ~Ig~~AF~~C~~L~~i~~~~ 96 (394)
T 4gt6_A 77 EIGSNAFYNCTSLKRVTIQD 96 (394)
T ss_dssp EECTTTTTTCTTCCEEEEGG
T ss_pred EEhHHHhhCCccCceEeecC
Confidence 46667788888888887754
No 247
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.03 E-value=0.11 Score=56.84 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=64.4
Q ss_pred CcCCccccceecccccccccccCcc-ccCCCCCCEEecCCCCCCcccCCC----CcccceeecccCCCCccccC-CCCCC
Q 040255 599 SLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPA-GLSSM 672 (869)
Q Consensus 599 ~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~-~~~~l 672 (869)
.+..+.+|+.+.+..+ +..++.. +..+.+|+.+.+.. .+..++.. ..+|+.+.+.+ +.++.|+. .|.++
T Consensus 235 ~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c 309 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDC 309 (379)
T ss_dssp TTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTC
T ss_pred cccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCC
Confidence 3456778888888654 5666543 67778888888864 45666653 35677777755 35667765 67788
Q ss_pred ccceEEeccCCCCCCchhhhhhhhccccccccccccCC
Q 040255 673 SSVLYVNLCNFLKLDPNELSEIVKDGWMKHSLYEERGI 710 (869)
Q Consensus 673 ~~L~~l~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 710 (869)
.+|+.+++.. ++..+...++..+..|+.+.+
T Consensus 310 ~~L~~i~lp~-------~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 310 VKLSSVTLPT-------ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEECCT-------TCCEECTTTTTTCTTCCCCCC
T ss_pred CCCCEEEcCc-------cccEEHHHHhhCCCCCCEEEE
Confidence 8888887653 233344455666666665544
No 248
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.01 E-value=0.0084 Score=63.35 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=24.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
+++.|+|++|+||||||.+++.. .-..+.|+.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs 155 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYAT 155 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEE
Confidence 56789999999999999999876 212345665
No 249
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.99 E-value=0.13 Score=56.63 Aligned_cols=76 Identities=11% Similarity=0.200 Sum_probs=42.3
Q ss_pred cCCccccceecccccccccccCc-cccCCCCCCEEecCCCCCCcccCCC----CcccceeecccCCCCccccC-CCCCCc
Q 040255 600 LGRLSWVKRLILSNNSNLERIPE-SIRHLSKLTFLFISHCERLQTLPEL----PCNLGLLSARNCTSLEKLPA-GLSSMS 673 (869)
Q Consensus 600 i~~l~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L~L~~c~~l~~lp~~----~~~L~~L~l~~c~~l~~lp~-~~~~l~ 673 (869)
+..+++|+.+.+..+ +..++. .+.++++|+.+.+. +.+..+++. -.+|+.+.+.+ +++.|.. .|.++.
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCE 334 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCC
Confidence 445666666666543 333433 25666677777665 345555543 24566665543 3555544 566666
Q ss_pred cceEEecc
Q 040255 674 SVLYVNLC 681 (869)
Q Consensus 674 ~L~~l~l~ 681 (869)
+|+.+.+.
T Consensus 335 ~L~~i~ip 342 (394)
T 4gt6_A 335 QLERIAIP 342 (394)
T ss_dssp TCCEEEEC
T ss_pred CCCEEEEC
Confidence 66666654
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.88 E-value=0.026 Score=68.04 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=37.9
Q ss_pred CcceeccccHHHHHHhhccC-------CCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 151 KGLVGVECSIEEIESLLCIG-------SEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..++|.+..++.+...+... ......+.++|++|+|||++|+++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45889998888887766421 12335789999999999999999999773
No 251
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.86 E-value=0.085 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 252
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.57 E-value=0.0073 Score=64.99 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=39.0
Q ss_pred CCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 150 NKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 150 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.+.++|++..++.+...+..+ .-+.++|.+|+|||+||+++++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356899999988887777643 357899999999999999999976544
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.38 E-value=0.0074 Score=58.31 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=23.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.+|.|.|++|+||||+|+++.+++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47889999999999999999997653
No 254
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.37 E-value=0.03 Score=54.68 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=54.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhh--cCCCC--C-----------
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELS--KDGNM--R----------- 238 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~--~~~~~--~----------- 238 (869)
-..|-|++-.|.||||.|-.+.-+...+=-.+.++.-+... ...+-..+.+.+.-.+. +.... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 34677778888999999998888655443344455422211 12233333333310000 00000 0
Q ss_pred -CHHHHHHHHccCce-EEEecCCC---------------------CCcEEEEEeCch
Q 040255 239 -NIESQLNRLARKKV-RIVFDDVT---------------------SGSRVIITTRDK 272 (869)
Q Consensus 239 -~~~~l~~~L~~kr~-LlVLDDv~---------------------~gsrIivTTR~~ 272 (869)
..+..++.+...+| |||||++. ....||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 03344555555555 99999994 667899999985
No 255
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.33 E-value=0.065 Score=55.10 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=28.1
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.-+..+|....+...-|.++|++|.|||++|.++++.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3456666543233456999999999999999999985
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.30 E-value=0.013 Score=58.47 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..-.+|+|+|..|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457899999999999999999988654
No 257
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.30 E-value=0.069 Score=58.32 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=33.9
Q ss_pred cCCCCCccEEEecCCCCCcccCcc----ccccchhcccccccccCC-CCcCCccccceecccccccccccCcc-ccCCCC
Q 040255 556 LCTFKTPITFEIIDCKMLERLPDE----LENLEYLTVKGTTIRELP-ESLGRLSWVKRLILSNNSNLERIPES-IRHLSK 629 (869)
Q Consensus 556 ~~~l~~L~~L~L~~~~~l~~lp~~----l~~L~~L~L~~n~i~~lP-~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~ 629 (869)
+.++.+|+.+.+..+ +..++.. ..+|+.+.+.++.++.++ ..+.++++|+.+.|..+ +..|+.. +.++++
T Consensus 259 F~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT
T ss_pred cceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCC
Confidence 344445555555332 3444433 344555555554454442 23444555555555432 4444332 444444
Q ss_pred CCEEec
Q 040255 630 LTFLFI 635 (869)
Q Consensus 630 L~~L~L 635 (869)
|+.+.+
T Consensus 335 L~~i~i 340 (379)
T 4h09_A 335 LSTISY 340 (379)
T ss_dssp CCCCCC
T ss_pred CCEEEE
Confidence 444433
No 258
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.23 E-value=0.011 Score=64.51 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=35.1
Q ss_pred ceeccccHHHHHHhhc-------------cCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 153 LVGVECSIEEIESLLC-------------IGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 153 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
++|.+..++.+...+. ........|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6788777777776662 1111335688999999999999999999774
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.20 E-value=0.0095 Score=57.03 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=22.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|.|.|+.|+||||+|+.+.+++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 260
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.15 E-value=0.05 Score=54.26 Aligned_cols=33 Identities=12% Similarity=-0.106 Sum_probs=25.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
-.++.|+|.+|+||||||..++. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 35799999999999999999987 1 223566665
No 261
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.10 E-value=0.018 Score=52.61 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=27.4
Q ss_pred hcccccccc--cCCCCcCCccccceecccccccccccCcc-ccCCCCCCEEecCCCC
Q 040255 586 LTVKGTTIR--ELPESLGRLSWVKRLILSNNSNLERIPES-IRHLSKLTFLFISHCE 639 (869)
Q Consensus 586 L~L~~n~i~--~lP~~i~~l~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L~L~~c~ 639 (869)
++.++++++ .+|..+ .++|+.|+|++| .+..||.. +..+++|+.|+|++|.
T Consensus 13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 444455555 555432 234566666666 55566544 4556666666666543
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.08 E-value=0.035 Score=67.87 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=37.5
Q ss_pred cceeccccHHHHHHhhccC-------CCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 152 GLVGVECSIEEIESLLCIG-------SEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++|.+..++.+...+... ......+.|+|++|+|||++|+++++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999888887766431 12235789999999999999999999763
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.07 E-value=0.018 Score=56.98 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=31.2
Q ss_pred cccHHHHHHhhccC-CCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 157 ECSIEEIESLLCIG-SEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 157 ~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
++.++++.+.+... .....+|+|.|..|.||||+|+.+...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455565555432 24457899999999999999999988653
No 264
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.03 E-value=0.059 Score=57.45 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=27.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
...++|+|+|.+|+||||++..++..++.. ...+.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVll 138 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLI 138 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEE
Confidence 346799999999999999999999866543 333444
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.97 E-value=0.012 Score=58.25 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+|.|+|+.|+||||+|+.+..++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998763
No 266
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.95 E-value=0.012 Score=57.19 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=22.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+.|.|+|+.|+||||+|+.+.+++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998764
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.94 E-value=0.011 Score=56.65 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+|+|.|++|+||||+|+.+ .+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 543
No 268
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.73 E-value=0.016 Score=62.06 Aligned_cols=46 Identities=20% Similarity=0.165 Sum_probs=32.1
Q ss_pred cccHHHHHHhhcc--CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 157 ECSIEEIESLLCI--GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 157 ~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
+.-.+++.+.+.. ..+....|.|+|++|.||||+|+.++..+...|
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3334444444431 234567799999999999999999999766554
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.65 E-value=0.029 Score=59.02 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=25.5
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 171 SEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 171 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.....+|+|+|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 355679999999999999999999886543
No 270
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.64 E-value=0.15 Score=54.92 Aligned_cols=50 Identities=16% Similarity=-0.002 Sum_probs=35.0
Q ss_pred HHHHHHhhc-cCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 160 IEEIESLLC-IGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 160 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
..+|-..|. .+=..-+++.|.|.+|+||||||.+++..+...=..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 456666664 22233468999999999999999999986654323466775
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.63 E-value=0.18 Score=53.32 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=31.4
Q ss_pred cHHHHHHhhccC------CCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 159 SIEEIESLLCIG------SEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 159 ~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
-.++|.+.|... .....+|+|+|.+|+||||++..++..++..
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 345556665432 1345799999999999999999999866543
No 272
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.48 E-value=0.019 Score=54.91 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+|+|.|+.|+||||+|+.+.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 273
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.47 E-value=0.098 Score=55.90 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=24.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
...+++|+|+.|+||||+++.++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999986543
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.41 E-value=0.015 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|+|+.|.||||+|+.+...+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.36 E-value=0.021 Score=54.98 Aligned_cols=22 Identities=23% Similarity=0.104 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 276
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.33 E-value=0.036 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.+|.|.|+.|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999997764
No 277
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.30 E-value=0.017 Score=55.90 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+.|.|+|++|+||||+|+.+.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.29 E-value=0.022 Score=55.53 Aligned_cols=24 Identities=38% Similarity=0.213 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
-.+|+|+|+.|.|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 367999999999999999999875
No 279
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.29 E-value=0.028 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..+|.|.|++|+||||+|+.+.+++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999876
No 280
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.26 E-value=0.026 Score=61.89 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..+.++|++|+|||++|+++++.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999997743
No 281
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.21 E-value=0.017 Score=62.31 Aligned_cols=26 Identities=12% Similarity=-0.035 Sum_probs=22.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++|+|..|.|||||++.+.+.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh
Confidence 47899999999999999999886644
No 282
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.16 E-value=0.026 Score=58.10 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=22.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|.|.|++|+||||||++++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998654
No 283
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.13 E-value=0.024 Score=55.86 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.4
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcC
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999987653
No 284
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.11 E-value=0.033 Score=50.83 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=41.9
Q ss_pred cEEEecCCCCCc--ccCcc-ccccchhcccccccccCCCC-cCCccccceeccccc
Q 040255 563 ITFEIIDCKMLE--RLPDE-LENLEYLTVKGTTIRELPES-LGRLSWVKRLILSNN 614 (869)
Q Consensus 563 ~~L~L~~~~~l~--~lp~~-l~~L~~L~L~~n~i~~lP~~-i~~l~~L~~L~Ls~n 614 (869)
..++.+++. +. .+|.. ..+|+.|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus 11 ~~v~Cs~~~-L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRG-LTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSC-CCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCC-CccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 366777765 66 88877 56899999999999999765 567899999999998
No 285
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.08 E-value=0.024 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.|.|.|++|.||||+|+.+..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.05 E-value=0.02 Score=56.55 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=22.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..+|+|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 287
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.04 E-value=0.02 Score=55.54 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
++|+|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 288
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.04 E-value=0.023 Score=55.16 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988654
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.98 E-value=0.03 Score=55.33 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.-.+|+|+|+.|.||||||+.+...+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999765
No 290
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.98 E-value=0.038 Score=62.69 Aligned_cols=45 Identities=24% Similarity=0.146 Sum_probs=36.9
Q ss_pred CcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 151 KGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+.++|.+..++.+...+..+ .-|.|+|++|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35899999888887766543 3578999999999999999998663
No 291
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.94 E-value=0.023 Score=61.55 Aligned_cols=96 Identities=15% Similarity=0.077 Sum_probs=56.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEE-EEeehhhhccCCHHHHHHHHHHHhhcCCCCCC-HHHHHHHHccCce
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYF-ALNVREAEETGGIKDLQKKLLSELSKDGNMRN-IESQLNRLARKKV 252 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~-~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~-~~~l~~~L~~kr~ 252 (869)
.+|+|+|+.|.|||||.+.+...+.......+. +.+..+...... ..+..+......... .+.+++.|...+=
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-----~~~v~q~~~~~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-----KCLVNQREVHRDTLGFSEALRSALREDPD 198 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEEBTTTBSCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-----ccceeeeeeccccCCHHHHHHHHhhhCcC
Confidence 489999999999999999998866543333332 221111000000 000000000000111 5578888899999
Q ss_pred EEEecCCC-------------CCcEEEEEeCchhhh
Q 040255 253 RIVFDDVT-------------SGSRVIITTRDKQVL 275 (869)
Q Consensus 253 LlVLDDv~-------------~gsrIivTTR~~~v~ 275 (869)
+|++|.+. .|.-||+||-+.+.+
T Consensus 199 villDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 199 IILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred EEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 99999996 566777777766544
No 292
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.91 E-value=0.037 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
-.+|+|.|+.|.||||||+.+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 293
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.90 E-value=0.03 Score=54.77 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=23.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+|.|.|+.|+||||+|+.+.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.90 E-value=0.033 Score=56.92 Aligned_cols=27 Identities=15% Similarity=-0.027 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.....|+|.|++|+||||+|+.+.+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998865
No 295
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.90 E-value=0.026 Score=54.92 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=23.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.+|.|.|++|+||||+|+.+.+++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999997653
No 296
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.88 E-value=0.023 Score=61.42 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=34.9
Q ss_pred CcCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 148 SKNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 148 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...+.++|.+..++.+...+... ...-|.|+|.+|+|||+||+++++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34466899988655543333211 122388999999999999999999664
No 297
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.81 E-value=0.043 Score=65.54 Aligned_cols=51 Identities=20% Similarity=0.228 Sum_probs=37.4
Q ss_pred CcceeccccHHHHHHhhccC-----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 151 KGLVGVECSIEEIESLLCIG-----------SEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.++.|.+..+++|.+.+... -...+-|.++|++|.|||.||++++++....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 45678888888877655321 1223457899999999999999999976543
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.81 E-value=0.033 Score=53.47 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
-.+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 299
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.81 E-value=0.34 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999986
No 300
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.78 E-value=0.13 Score=57.15 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=25.5
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCccC-ceEEE
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRHFE-GSYFA 208 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~ 208 (869)
.++|+|..|+||||||..+......++. .+++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 5889999999999999999987655443 34443
No 301
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.77 E-value=0.76 Score=49.24 Aligned_cols=139 Identities=9% Similarity=-0.051 Sum_probs=87.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc-CccCceEEEEeehhhhccCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHccCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS-RHFEGSYFALNVREAEETGGIKDLQKKLLSELSKDGNMRNIESQLNRLARKK 251 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~l~~~L~~kr 251 (869)
-.++..++|..|.||++.|+++.+.+. ..|+....+. + ....++..+...+... -+.+++
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~---------------plf~~~ 77 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFSLCQAM---------------SLFASR 77 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHHHHHHH---------------HHCCSC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHHHhcCc---------------CCccCC
Confidence 456888999999999999999988654 3454322221 1 1234555555443211 123456
Q ss_pred eEEEecCCC-------------------CCcEEEEEeCc-------hhhhhh-cCCCeEEEeCCCCHHHHHHHHHHhhcC
Q 040255 252 VRIVFDDVT-------------------SGSRVIITTRD-------KQVLKN-CWANKKYRMKELVYADAHKLFCQWAFG 304 (869)
Q Consensus 252 ~LlVLDDv~-------------------~gsrIivTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~ 304 (869)
-++|+|+++ ++..+|++|-. ..+... ......++..+++.++..+.+...+-.
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 677778764 46677766543 233333 234578999999999998888776532
Q ss_pred CCCCCccHHHHHHHHHHHcCCCchhHHH
Q 040255 305 GDHLDASHIELTDKAIKYAQGVPLALKV 332 (869)
Q Consensus 305 ~~~~~~~~~~~~~~i~~~~~GlPLal~~ 332 (869)
.+. .-..+.+..+++.++|.+.++..
T Consensus 158 ~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 158 LNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred cCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 221 12246678888999998877654
No 302
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.73 E-value=0.037 Score=54.62 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
....+|+|.|+.|+||||+|+.+.++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999999865
No 303
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.73 E-value=0.033 Score=54.68 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=22.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|.|++|+||||+|+.+.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998764
No 304
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.72 E-value=0.18 Score=53.53 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=44.2
Q ss_pred eeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHH
Q 040255 154 VGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSE 230 (869)
Q Consensus 154 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~ 230 (869)
.|...-+..|-.++ .+=..-.++.|.|.+|+||||||..++..+..+-..++|++ -......+...++..
T Consensus 49 ~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 49 TGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 118 (315)
T ss_dssp CSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred CCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 34444455566655 22233457889999999999999998876543335666665 224455666655544
No 305
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.71 E-value=0.035 Score=54.14 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|.|++|+||||+|+.+.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988653
No 306
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.70 E-value=0.2 Score=55.46 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=24.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...+|.++|.+|+||||++..++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999998866554
No 307
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.68 E-value=0.036 Score=53.77 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..|+|.|+.|+||||+|+.+.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988653
No 308
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.67 E-value=0.052 Score=52.76 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
-.+|.|.|++|.||||+|+.+...+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999987653
No 309
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.66 E-value=0.026 Score=53.98 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=22.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|.|.|+.|+||||+|+.+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 310
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.65 E-value=0.024 Score=55.32 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFE 203 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 203 (869)
|.|.|.|+.|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45789999999999999999887655543
No 311
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.61 E-value=0.024 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=18.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|.|.|+.|+||||+|+.+.+++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988754
No 312
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.58 E-value=0.037 Score=52.63 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.7
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 313
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.57 E-value=0.051 Score=51.97 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=24.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..++++|.|..|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999876544
No 314
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.54 E-value=0.042 Score=53.49 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=23.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+|+|.|+.|+||||+|+.+.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.53 E-value=0.043 Score=53.98 Aligned_cols=26 Identities=23% Similarity=0.083 Sum_probs=23.2
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
+...+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999885
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.48 E-value=0.036 Score=53.93 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHHh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
...|+|+|+.|+||||+|+.+.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999887
No 317
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.47 E-value=0.041 Score=56.53 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
....+|+|.|+.|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.45 E-value=0.04 Score=53.73 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
.+++|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 319
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.45 E-value=0.066 Score=52.97 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=23.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.+|.|.|+.|+||||+|+.+.+++...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999977553
No 320
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.40 E-value=0.16 Score=53.50 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.-.+++|+|+.|+||||+++.++..+... .+.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 34699999999999999999999866543 3455554
No 321
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.39 E-value=0.18 Score=52.99 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..+++++|.+|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999998866543
No 322
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.39 E-value=0.04 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 323
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.38 E-value=0.28 Score=52.77 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=33.5
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC------ccCceEEEE
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR------HFEGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 209 (869)
..|-.+|..+=..-.++.|+|.+|+||||||..++..... .=..++|+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4455555432234578999999999999999998876432 123567776
No 324
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.37 E-value=0.038 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
-.+|+|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999987643
No 325
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.36 E-value=0.039 Score=55.34 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..|.|.|++|+||||+|+.+.+++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998764
No 326
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.35 E-value=0.043 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...|.|.|++|+||||+|+.+.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999999999998763
No 327
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.35 E-value=0.16 Score=56.52 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=30.9
Q ss_pred HHHHHHhhccC-------CCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 160 IEEIESLLCIG-------SEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 160 ~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
.++|.++|... ....++|.|+|.||+||||+|..++..++.+
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34555555432 1346899999999999999999999866554
No 328
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.28 E-value=0.033 Score=54.29 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFE 203 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 203 (869)
++++|.|+.|.|||||++.+...+...|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 46899999999999999999987654443
No 329
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.26 E-value=0.043 Score=55.19 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=22.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|+|+.|.||||+|+.+...+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 330
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.25 E-value=0.061 Score=52.86 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=29.5
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 160 IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 160 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
+..+..++.. -.....+.|+|++|.||||+|.++++.+..
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5556666643 222346899999999999999999997643
No 331
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.24 E-value=0.046 Score=54.15 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
....+|+|+|+.|.||||+|+.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999988753
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.20 E-value=0.033 Score=55.16 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++|.|+|++|+|||||++.+..+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46789999999999999999998764
No 333
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.11 E-value=0.1 Score=52.38 Aligned_cols=35 Identities=9% Similarity=-0.283 Sum_probs=26.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
-.++.|+|..|.||||+|..+..+...+-..+..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 36788999999999999999888775543334444
No 334
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.08 E-value=0.062 Score=59.65 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=35.4
Q ss_pred cceeccccHHHHHHhhcc------------CCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 152 GLVGVECSIEEIESLLCI------------GSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
.++|.+..++.|...+.. .....+-|.++|++|+||||+|++++..+...|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 467777766666554421 001234588999999999999999999775443
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.03 E-value=0.067 Score=53.10 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=24.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999977543
No 336
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.01 E-value=0.049 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999764
No 337
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.98 E-value=0.047 Score=53.83 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999998864
No 338
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.95 E-value=0.063 Score=53.28 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=23.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 339
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.92 E-value=0.053 Score=56.04 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+|.|.|++|+||||+|+.+..++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999998753
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.90 E-value=0.048 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
.+|+|.|+.|.||||+|+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 341
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.89 E-value=0.049 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=22.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+|+|+|+.|+||||+|+.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998865
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.87 E-value=0.049 Score=54.02 Aligned_cols=27 Identities=11% Similarity=0.002 Sum_probs=23.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..+|+|.|+.|+||||+|+.+.+++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999987654
No 343
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.87 E-value=0.057 Score=52.93 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...+|+|.|+.|.||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 344
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.85 E-value=0.22 Score=53.78 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.-.+++|+|..|+||||+++.++..+... .+.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 34699999999999999999999866543 3455554
No 345
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.81 E-value=0.064 Score=53.61 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=24.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...++|.|.|++|+||||.|+.+.+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999875
No 346
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.81 E-value=0.054 Score=55.39 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..+|+|+|+.|.|||||++.+.+++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997653
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.80 E-value=0.055 Score=54.50 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...|.|.|++|+||||+|+.+.+++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999865
No 348
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.79 E-value=0.044 Score=52.62 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEEecCCchHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVF 195 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~ 195 (869)
.+++|+|+.|.|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999744
No 349
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.75 E-value=0.043 Score=56.26 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|+|+.|.||||+++.+...+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999998764
No 350
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.75 E-value=0.31 Score=51.24 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=27.0
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCcc--CceEEEE
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRHF--EGSYFAL 209 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~ 209 (869)
++-|.|.+|+||||||.++.......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 689999999999999998887665442 3567776
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.73 E-value=0.049 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..|.|.|++|+||||+|+.+.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 352
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.69 E-value=0.043 Score=54.51 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+|+|.|+.|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 353
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.65 E-value=0.057 Score=55.50 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
-.+|+|.|+.|.||||+|+.+.+++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 354
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.65 E-value=0.27 Score=55.05 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=28.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.-.+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35699999999999999999999866533 3455554
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.61 E-value=0.074 Score=56.57 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=32.7
Q ss_pred ceeccccHHHHHHhhccC--CCCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 153 LVGVECSIEEIESLLCIG--SEGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 153 ~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|-...+..+...+... .....+|||.|..|+||||||+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345444555554443322 34567999999999999999999887654
No 356
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.61 E-value=0.058 Score=52.97 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.-++|+|+|+.|+|||||++.+......
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 3467899999999999999999986543
No 357
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.51 E-value=0.1 Score=54.80 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998865
No 358
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.50 E-value=0.029 Score=55.09 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=10.3
Q ss_pred ccCCCCCccEEEecCCC
Q 040255 555 SLCTFKTPITFEIIDCK 571 (869)
Q Consensus 555 ~~~~l~~L~~L~L~~~~ 571 (869)
.+..-+.|+.|+|++|.
T Consensus 65 aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTA 81 (197)
T ss_dssp HHTTCSCCCEEECTTSC
T ss_pred HHhhCCCcCEEEccCCC
Confidence 34445566666666665
No 359
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=92.49 E-value=0.022 Score=50.15 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=41.4
Q ss_pred CCcEEEccccccccCchhHHHHHHHccCCceEEecCCccCCCcchHHHHHHhhhhceeeeeeccccccccceEeeec
Q 040255 1 MYDVFLSFRGEDTRDNFTSHLHHVLSLKSIKTFIDDQLIRGDNISQSLLGTIEASCIAIIIFSERYASSRWFFYRVD 77 (869)
Q Consensus 1 ~~dvF~sf~g~d~r~~f~~~l~~~L~~~gi~~f~d~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~ya~s~wvfy~vd 77 (869)
+|.|||||..+|.++.|++.| .+.|+. |.| +.|+.|.+.||+.++.-+.|.|+-|+++
T Consensus 4 ~~~lFISh~~~d~~~~L~~~l----~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~ 61 (111)
T 1eiw_A 4 EIRLYITEGEVEDYRVFLERL----EQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVD 61 (111)
T ss_dssp CEEEEECCCCSHHHHHHHHHH----HHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHH
T ss_pred eEEEEEecccHhHHHHHHHHH----hCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHH
Confidence 489999999999434444444 355664 444 6788888888888887778999655554
No 360
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.45 E-value=0.22 Score=53.74 Aligned_cols=52 Identities=15% Similarity=0.005 Sum_probs=35.2
Q ss_pred ccHHHHHHhhc-cCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 158 CSIEEIESLLC-IGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 158 ~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.-...|-.+|. .+=..-+++.|+|.+|+||||||.++...+...=..++|+.
T Consensus 44 TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 44 TGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33455555564 22223468999999999999999999876543334567776
No 361
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.44 E-value=0.065 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 362
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.40 E-value=0.068 Score=62.48 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=40.4
Q ss_pred cCCcceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 149 KNKGLVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 149 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 3467899988888888777644 4789999999999999999999665443
No 363
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.32 E-value=0.066 Score=56.91 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
++.++|+|.|-||+||||.|..+.--++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 46799999999999999999888775543
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.28 E-value=0.071 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.8
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 365
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.28 E-value=0.064 Score=53.66 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..|.|.|++|+||||+|+.+.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.23 E-value=0.069 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 367
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.21 E-value=0.076 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.172 Sum_probs=22.1
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+|+|.|+.|.||||+|+.+..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988764
No 368
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.19 E-value=0.38 Score=53.38 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=34.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC-ccCceEEEEeehhhhccCCHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLS 229 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~il~ 229 (869)
..++|.|..|+|||+|+..+.+.+.. +-+.++|+ .+++-. ..+.++.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER~--rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGERT--REGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCCH--HHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCcc--hHHHHHHHHhhh
Confidence 45899999999999999999987643 33455554 333321 234455555544
No 369
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.18 E-value=0.17 Score=54.77 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 162 EIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 162 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
++.+.+........+|+|+|.+|+|||||+.++...+..
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444333456789999999999999999999876543
No 370
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.12 E-value=0.25 Score=52.78 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=44.8
Q ss_pred ceeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHh
Q 040255 153 LVGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSEL 231 (869)
Q Consensus 153 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l 231 (869)
+.|...-...|-+++. +-..-.++.|.|.+|+||||||..++..+..+=..++|++ -......+...++...
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHh
Confidence 3444444555655553 2223357889999999999999999886554223455554 2345566666665544
No 371
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.11 E-value=0.082 Score=52.57 Aligned_cols=26 Identities=15% Similarity=0.168 Sum_probs=23.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
-.+|.|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.09 E-value=0.088 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
-.+|+|.|+.|.||||+|+.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999998663
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.06 E-value=0.067 Score=52.63 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=22.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999876
No 374
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.00 E-value=0.36 Score=53.81 Aligned_cols=52 Identities=27% Similarity=0.318 Sum_probs=34.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC-ccCceEEEEeehhhhccCCHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR-HFEGSYFALNVREAEETGGIKDLQKKLLS 229 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~il~ 229 (869)
..++|.|..|+|||+|+..+.+.+.. +-+.++|+. +++- ...+.++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGER--~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGER--TREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESCC--SHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-cccC--cHHHHHHHHhhhc
Confidence 45899999999999999999997643 445666663 3332 1234455555544
No 375
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.99 E-value=0.15 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
-.+++|+|..|.|||||++.++..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998743
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.98 E-value=0.082 Score=56.45 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=22.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 377
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.94 E-value=0.077 Score=54.49 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=23.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...+|.|+|++|.||||+|+.+..++.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999998764
No 378
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.94 E-value=0.061 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
++++|+|+.|.|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999988654
No 379
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.92 E-value=0.81 Score=51.06 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=43.9
Q ss_pred eeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-CceEEEEeehhhhccCCHHHHHHHHHHHh
Q 040255 154 VGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQKKLLSEL 231 (869)
Q Consensus 154 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~~~il~~l 231 (869)
.|...-...|-.++ .+=..-.++.|.|.+|+||||||..++..+.... ..++|++ -......+...++...
T Consensus 181 ~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 181 AGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSE 252 (444)
T ss_dssp --CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHH
T ss_pred CcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHH
Confidence 34444455565555 3323345788999999999999999988665322 3466654 2344556666665543
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.91 E-value=0.091 Score=54.91 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHH
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 381
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.77 E-value=0.24 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=22.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++|+|.+|+|||+|+..+.+.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 46899999999999999999997654
No 382
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.77 E-value=0.19 Score=50.26 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
....|.|+|.+|+|||||+.++.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 56889999999999999999998865433
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.76 E-value=0.13 Score=51.13 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=30.4
Q ss_pred ccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 158 CSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 158 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...+++.+.+.. ...++|+|+|.+|+|||||+.++.......
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444444432 356899999999999999999998865444
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.73 E-value=0.089 Score=53.16 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|.|++|.||||+|+.+..++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998763
No 385
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.66 E-value=0.091 Score=53.64 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=22.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.-.+|+|.|..|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998855
No 386
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.64 E-value=0.072 Score=56.71 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=23.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++|.|+|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35899999999999999999998754
No 387
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.63 E-value=0.096 Score=55.60 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..-.+|+|.|..|.||||||+.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4457999999999999999999988654
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.60 E-value=0.1 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHH
Q 040255 174 VCKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.60 E-value=0.1 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.|.|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 390
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.58 E-value=0.084 Score=55.97 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
++|.|+|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998753
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.58 E-value=0.092 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..|.|.|+.|+||||+|+.+.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 392
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.56 E-value=0.14 Score=54.16 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=28.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.-.+|+|+|++|+||||+++.++..+... .+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999866543 4455554
No 393
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.50 E-value=0.088 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+++|+|+.|.|||||++.+...+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998865
No 394
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.48 E-value=0.29 Score=52.85 Aligned_cols=54 Identities=17% Similarity=0.072 Sum_probs=36.3
Q ss_pred ccccHHHHHHhhc-cCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 156 VECSIEEIESLLC-IGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 156 r~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
...-...|-.+|. .+=..-+++.|.|.+|+||||||.+++......=..++|+.
T Consensus 44 i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 44 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3333455655564 22223458899999999999999998876544334577776
No 395
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.48 E-value=0.13 Score=51.91 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=32.3
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcC------ccCceEEEE
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISR------HFEGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 209 (869)
..|-.+|..+=..-.+++|+|.+|+||||||+.++..+.. .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3444445322122358999999999999999999885322 124677776
No 396
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.36 E-value=0.079 Score=50.84 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.+++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886543
No 397
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.31 E-value=0.1 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.1
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.|.|.|+.|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.22 E-value=0.13 Score=51.45 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=26.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.+++|.|.+|+|||||++.++......=..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57899999999999999999975543222445544
No 399
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.21 E-value=0.12 Score=48.92 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.-.+++|+|+-|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999855
No 400
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.14 E-value=0.082 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+++|+|+.|.|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998855
No 401
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.98 E-value=0.13 Score=52.17 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=26.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.++.|.|.+|+||||||..++......=..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 57899999999999999988775543334566665
No 402
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.93 E-value=0.4 Score=53.49 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=35.8
Q ss_pred eeccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 154 VGVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 154 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.|...-...|-+++. +=..-.++.|.|.+|+||||+|..++..+..+=..++|++
T Consensus 178 ~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 178 TGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 344444555555552 2233457889999999999999999886654422455554
No 403
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.78 E-value=0.17 Score=52.26 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
-.+++|+|+.|.|||||++.+...+...+.+.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 46899999999999999999988665443455544
No 404
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.73 E-value=0.11 Score=52.76 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=25.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc-CccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS-RHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 209 (869)
.+++|+|+.|.|||||++.+..... ..-....++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5899999999999999999885322 2223445554
No 405
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.66 E-value=0.13 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=20.7
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+|.|.|++|+||||.|+.+.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999875
No 406
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.66 E-value=0.12 Score=54.44 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=23.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..++|+|+|.+|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999988664
No 407
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.59 E-value=0.13 Score=54.00 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=22.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
++|.|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 578999999999999999999865
No 408
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.56 E-value=0.86 Score=51.00 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=40.6
Q ss_pred eccccHHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCcc-CceEEEEeehhhhccCCHHHHHHHHHH
Q 040255 155 GVECSIEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRHF-EGSYFALNVREAEETGGIKDLQKKLLS 229 (869)
Q Consensus 155 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~~~il~ 229 (869)
|...-...|..++ .+=..-.++.|.|.+|+||||||..++..+...- ..++|+.. ......+...++.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~------E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL------EMSAQQLVMRMLC 253 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES------SSCHHHHHHHHHH
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC------CCCHHHHHHHHHH
Confidence 3344444555544 2222335788999999999999999988665422 24666541 2334455555443
No 409
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.47 E-value=0.15 Score=53.93 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=24.3
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
....+|+|.|..|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999988664
No 410
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.38 E-value=0.12 Score=50.52 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.5
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
+++|+|..|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999998654
No 411
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.35 E-value=0.2 Score=48.14 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999986543
No 412
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.35 E-value=0.25 Score=54.64 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=24.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..++|.++|.+|+||||++..++..++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998866543
No 413
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.32 E-value=0.082 Score=55.52 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=20.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...+|+|.|..|.||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 414
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.31 E-value=0.13 Score=51.53 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=23.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999998665
No 415
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.30 E-value=0.15 Score=51.70 Aligned_cols=28 Identities=18% Similarity=0.155 Sum_probs=24.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
....+|+|.|+.|.||||+|+.+..++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999988653
No 416
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.24 E-value=0.14 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.+|.|.|++|.||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.21 E-value=0.21 Score=52.45 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=26.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccC-ceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFE-GSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~ 209 (869)
.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 57999999999999999999886654322 344554
No 418
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.19 E-value=0.091 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=15.9
Q ss_pred EEEEEEecCCchHHHHHHHHH-Hhh
Q 040255 175 CKLRIWGIGGISKITIAGAVF-NKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~-~~~ 198 (869)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 579999999999999999998 654
No 419
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.15 E-value=0.32 Score=53.62 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=47.0
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcCccC----ceEEEEeehhhhccCCHHHHHHHHHHHhh-cC------CCCCC-----
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISRHFE----GSYFALNVREAEETGGIKDLQKKLLSELS-KD------GNMRN----- 239 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~s~~~~~~~l~~~il~~l~-~~------~~~~~----- 239 (869)
.++|.|..|+|||+|+..+.+....+-+ .++++. +++- ...+..+.+++...-. .. ..+..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR--~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGIT--FEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEEC--HHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecCC--cHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 3789999999999999999987654333 344443 3321 1233445555433210 00 00010
Q ss_pred -----HHHHHHHHc---cCceEEEecCCC
Q 040255 240 -----IESQLNRLA---RKKVRIVFDDVT 260 (869)
Q Consensus 240 -----~~~l~~~L~---~kr~LlVLDDv~ 260 (869)
.-.+.++++ ++.+|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 223345554 689999999994
No 420
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.03 E-value=0.16 Score=53.26 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=23.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..++|.|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34688999999999999999999875
No 421
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.96 E-value=0.19 Score=54.74 Aligned_cols=28 Identities=18% Similarity=0.006 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..-++++|+|+.|.|||||++.+.....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4456899999999999999999998643
No 422
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.90 E-value=0.42 Score=50.94 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=32.6
Q ss_pred HHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhhcCc------cCceEEEE
Q 040255 161 EEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKISRH------FEGSYFAL 209 (869)
Q Consensus 161 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 209 (869)
..|-.+|..+=..-.++.|+|.+|+||||||..++..+... =..++|+.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44555553221223588999999999999999988764322 23567776
No 423
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.65 E-value=0.29 Score=50.92 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.++.|+|.+|+||||||..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999998875543
No 424
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.63 E-value=0.2 Score=49.34 Aligned_cols=26 Identities=12% Similarity=-0.081 Sum_probs=23.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.+|.|.|+.|.||||+|+.+++++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998753
No 425
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.58 E-value=0.16 Score=51.64 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=26.3
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.. .+++|+|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 57 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP-DRGEVRL 57 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCC-SEEEEEE
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEE
Confidence 45 78999999999999999999875432 2344444
No 426
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.58 E-value=0.31 Score=49.93 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
...++.+.|.||+||||++..+...+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457888999999999999999987665
No 427
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.37 E-value=0.19 Score=55.88 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=23.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
..++|+|+|.+|+||||+|..++.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999886543
No 428
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.32 E-value=0.16 Score=51.10 Aligned_cols=33 Identities=24% Similarity=0.106 Sum_probs=25.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 63 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAP-TEGKVFL 63 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEE
Confidence 47999999999999999998864432 2455554
No 429
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.32 E-value=0.21 Score=50.37 Aligned_cols=27 Identities=19% Similarity=0.355 Sum_probs=24.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
-..|.|.|+.|+||||+++.+.+.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 467899999999999999999998765
No 430
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.27 E-value=0.14 Score=50.75 Aligned_cols=23 Identities=22% Similarity=0.011 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 431
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.26 E-value=0.16 Score=56.24 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
....+|.|+|++|.||||+|+++..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999998765
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.21 E-value=0.42 Score=55.45 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=62.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc----c--CceEEEEe---------ehhh-----hccCCHHHHHHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH----F--EGSYFALN---------VREA-----EETGGIKDLQKKLLSELSKD 234 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~----F--~~~~~~~~---------~~~~-----s~~~~~~~l~~~il~~l~~~ 234 (869)
.+++|+|..|.|||||++.++--.... . ....++.. +.+. ...........+++..++-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999998732211 0 01122210 0000 00000112233444444422
Q ss_pred CCC---C---C-----HHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCchhhhhhcCCCe
Q 040255 235 GNM---R---N-----IESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDKQVLKNCWANK 282 (869)
Q Consensus 235 ~~~---~---~-----~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~~v~~~~~~~~ 282 (869)
... . . .-.+.+.|..++=+|+||.-- .|..||+.|-+...+... .+.
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~-aDr 537 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL-ADK 537 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-CSE
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCE
Confidence 111 1 1 334556788889999999874 477888888887766554 345
Q ss_pred EEEeC
Q 040255 283 KYRMK 287 (869)
Q Consensus 283 ~~~l~ 287 (869)
++.+.
T Consensus 538 vivl~ 542 (608)
T 3j16_B 538 VIVFE 542 (608)
T ss_dssp EEECE
T ss_pred EEEEe
Confidence 55554
No 433
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.20 E-value=0.22 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
+-|.|+|.+|+|||||..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998863
No 434
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.18 E-value=0.19 Score=49.12 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+.|.|.|..|+||||||.++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998763
No 435
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.17 E-value=0.23 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHHh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 436
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.11 E-value=2.1 Score=49.57 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=62.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc-----cC-ceEEEEeehhhhccCCHHHH--------------HHHHHHHhhcC
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH-----FE-GSYFALNVREAEETGGIKDL--------------QKKLLSELSKD 234 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~-~~~~~~~~~~~s~~~~~~~l--------------~~~il~~l~~~ 234 (869)
.+++|+|+.|.|||||++.++..+... +. ...++..-........+... ..+++..++-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~ 462 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII 462 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence 479999999999999999999743211 11 12333211000001112111 12333333321
Q ss_pred CC-CC-----C-----HHHHHHHHccCceEEEecCCC---------------------CCcEEEEEeCchhhhhhcCCCe
Q 040255 235 GN-MR-----N-----IESQLNRLARKKVRIVFDDVT---------------------SGSRVIITTRDKQVLKNCWANK 282 (869)
Q Consensus 235 ~~-~~-----~-----~~~l~~~L~~kr~LlVLDDv~---------------------~gsrIivTTR~~~v~~~~~~~~ 282 (869)
.. .. . .-.+.+.|...+=+|+||.-- .|..||++|-+...+... .++
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~-adr 541 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV-SDR 541 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-CSE
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh-CCE
Confidence 11 11 1 334556778888899999864 477889999987776554 345
Q ss_pred EEEeC
Q 040255 283 KYRMK 287 (869)
Q Consensus 283 ~~~l~ 287 (869)
++.+.
T Consensus 542 v~vl~ 546 (607)
T 3bk7_A 542 LIVFE 546 (607)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 55553
No 437
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.10 E-value=0.59 Score=50.60 Aligned_cols=54 Identities=19% Similarity=0.053 Sum_probs=36.0
Q ss_pred ccccHHHHHHhhc-cCCCCeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 156 VECSIEEIESLLC-IGSEGVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 156 r~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
...-...|-.+|. .+=..-+++.|.|.+|+||||||..++......=..++|+.
T Consensus 55 i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 55 VSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3334455666664 22123357888999999999999998876544334677776
No 438
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.09 E-value=0.24 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=22.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
..|.|.|+.|+||||+|+.+.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998764
No 439
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.08 E-value=0.66 Score=51.64 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred EEEEEEecCCchHHHHH-HHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC-------CCCCC-------
Q 040255 175 CKLRIWGIGGISKITIA-GAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD-------GNMRN------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~-------~~~~~------- 239 (869)
..++|.|..|+|||+|| ..+.++ .+-+..+.+..+++-. ..+..+.+.+...-..+ .....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~--~~~dv~~V~~~IGeR~--~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ--RDSGIKCIYVAIGQKA--STISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT--SSSSCEEEEEEESCCH--HHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh--ccCCceEEEEEecCCh--HHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 35789999999999997 567664 2334433333343321 23344455443321000 00000
Q ss_pred ---HHHHHHHH--ccCceEEEecCCC
Q 040255 240 ---IESQLNRL--ARKKVRIVFDDVT 260 (869)
Q Consensus 240 ---~~~l~~~L--~~kr~LlVLDDv~ 260 (869)
.-.+.+++ +++.+||++||+.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11223333 5789999999994
No 440
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.98 E-value=0.18 Score=51.07 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=25.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.+++|+|+.|.|||||.+.+..-+.. ..+.+++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~ 65 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYID 65 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEEC
Confidence 57999999999999999998864432 24555553
No 441
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.96 E-value=0.31 Score=51.18 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=27.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
...+++|+|.+|+||||+|..++..++.. ...+.+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 35789999999999999999999866543 3344443
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.95 E-value=0.24 Score=54.00 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.5
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|.|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998754
No 443
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.93 E-value=0.57 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHHHhhc
Q 040255 176 KLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.++|.|..|+|||+|+..+.+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred EEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999988654
No 444
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.93 E-value=0.14 Score=61.89 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=39.5
Q ss_pred CcceeccccHHHHHHhhccC-----------CCCeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 151 KGLVGVECSIEEIESLLCIG-----------SEGVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 151 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
.+++|.+..+++|.+.+... -...+.+.++|++|+||||||++++......|
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 56789988888888766421 12234588999999999999999999775543
No 445
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.92 E-value=0.46 Score=51.02 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
....+|+|+|.+|.|||||+..+...+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999999987543
No 446
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.85 E-value=0.44 Score=53.83 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=23.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
...++|.|+|.+|+||||++..++..++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34679999999999999999999886654
No 447
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.75 E-value=0.66 Score=51.87 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=46.0
Q ss_pred EEEEEEecCCchHHHHH-HHHHHhhcC------ccCceEEEEeehhhhccCCHHHHHHHHHHHhhc-------CCCCCC-
Q 040255 175 CKLRIWGIGGISKITIA-GAVFNKISR------HFEGSYFALNVREAEETGGIKDLQKKLLSELSK-------DGNMRN- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA-~~v~~~~~~------~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~-------~~~~~~- 239 (869)
..++|.|..|+|||+|| ..+.+.... +-+..+.+..+++-. ..+..+.+.+...-.. ...+..
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~--~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKR--STVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCH--HHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCc--HHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 35789999999999995 577775542 245434343443321 1334445544432100 000110
Q ss_pred ---------HHHHHHHH--ccCceEEEecCCC
Q 040255 240 ---------IESQLNRL--ARKKVRIVFDDVT 260 (869)
Q Consensus 240 ---------~~~l~~~L--~~kr~LlVLDDv~ 260 (869)
.-.+.+++ .++.+||++||+.
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 11223444 4789999999994
No 448
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.70 E-value=0.4 Score=49.38 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
++|+|.|-||+||||+|..++..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578888999999999999999876643
No 449
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.63 E-value=0.22 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
..+||.|++|+||||+|+.+.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998876
No 450
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.57 E-value=0.18 Score=51.16 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+++|+|..|.|||||++.+..-+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998743
No 451
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.53 E-value=0.2 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
.+|+|.|+.|.||||+|+.+..++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3689999999999999999988653
No 452
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.47 E-value=0.21 Score=51.00 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=26.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.+++|+|+.|.|||||.+.++.-+... +.+++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 479999999999999999998866554 666653
No 453
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.45 E-value=0.85 Score=50.87 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=45.2
Q ss_pred EEEEEEecCCchHHHHH-HHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhcC-------CCCCC-------
Q 040255 175 CKLRIWGIGGISKITIA-GAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSKD-------GNMRN------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~-------~~~~~------- 239 (869)
..++|.|..|+|||+|| ..+.+... -+..+.+..+++-. ..+..+.+.+...-..+ ..+..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iGeR~--~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVAIGQKQ--STVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEEESCCH--HHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEECCCcc--hHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 35789999999999996 47777643 34443333443321 23344444444321100 00000
Q ss_pred ---HHHHHHHH--ccCceEEEecCCC
Q 040255 240 ---IESQLNRL--ARKKVRIVFDDVT 260 (869)
Q Consensus 240 ---~~~l~~~L--~~kr~LlVLDDv~ 260 (869)
.-.+.+++ +++.+||++||+.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11233444 4789999999994
No 454
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.43 E-value=0.22 Score=51.01 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=25.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh-cCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI-SRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~ 208 (869)
.+++|+|..|.|||||.+.++.-. .....+.+++
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~ 64 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 479999999999999999998741 1223455554
No 455
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.31 E-value=0.21 Score=51.85 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=24.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||++.+..-+.. ..+.+++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p-~~G~I~~ 67 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKP-SSGRILF 67 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCeEEEE
Confidence 47999999999999999998864322 2344444
No 456
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.29 E-value=0.36 Score=50.91 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=24.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
...++|+|+|-||+||||+|..++..++..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 456889999999999999999998866543
No 457
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.28 E-value=0.19 Score=51.82 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=25.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||.+.+..-+.. ..+.+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEE
Confidence 57999999999999999998874432 2455555
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.27 E-value=0.26 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHH
Q 040255 175 CKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
..|+|+|.+|+|||||..++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999876
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.26 E-value=0.35 Score=55.11 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcCcc
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISRHF 202 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 202 (869)
...+|.++|++|.||||+|+.+...+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 356889999999999999999998765433
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.24 E-value=0.22 Score=48.66 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHh
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999873
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.22 E-value=0.25 Score=45.98 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 040255 176 KLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~ 196 (869)
-|.|+|.+|+|||||+.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999886
No 462
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.20 E-value=0.23 Score=51.40 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=26.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhc-CccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKIS-RHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~ 209 (869)
.+++|+|..|.|||||.+.++.-.. ....+.+++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 4799999999999999999987531 2234555553
No 463
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=88.17 E-value=0.65 Score=50.78 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=33.3
Q ss_pred cceeccccHHHHHHhhccCC-CCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 152 GLVGVECSIEEIESLLCIGS-EGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 152 ~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.++|....++++.+.+..-. .+.. |.|.|.+|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 47787777777766654322 2333 589999999999999999874
No 464
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.06 E-value=0.2 Score=50.88 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=25.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 65 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIF 65 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEE
Confidence 47999999999999999999874432 2455554
No 465
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.02 E-value=0.38 Score=46.64 Aligned_cols=24 Identities=17% Similarity=-0.224 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.++.|+|+.|+||||+|..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999997776654
No 466
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.98 E-value=0.73 Score=45.76 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=23.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 201 (869)
..|.|.|+.|.||||+|+.+.+.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 578899999999999999999977653
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.98 E-value=0.22 Score=50.69 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=21.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+++|+|..|.|||||.+.++.-+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998643
No 468
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.97 E-value=0.45 Score=48.14 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=25.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHh-hcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK-ISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~~ 209 (869)
.++.|.|.+|+||||+|.+++.. ....-..++|++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 57889999999999999987654 333334455554
No 469
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.95 E-value=0.26 Score=51.94 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=22.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34679999999999999999998755
No 470
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.94 E-value=0.21 Score=51.40 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=25.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~ 66 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYF 66 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEE
Confidence 47999999999999999999875432 2355554
No 471
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.87 E-value=0.21 Score=51.49 Aligned_cols=33 Identities=18% Similarity=0.031 Sum_probs=25.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 83 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIII 83 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEE
Confidence 57999999999999999998875432 2455555
No 472
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.86 E-value=0.34 Score=46.76 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHh
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
....|+|+|.+|+|||||..++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998863
No 473
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.86 E-value=0.36 Score=48.15 Aligned_cols=30 Identities=13% Similarity=-0.030 Sum_probs=23.1
Q ss_pred EEEEEecCCchHHHHHHHHHHhhcC-ccCce
Q 040255 176 KLRIWGIGGISKITIAGAVFNKISR-HFEGS 205 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~ 205 (869)
.|.+.|.||+||||+|..++..... .++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 4778899999999999998886543 34443
No 474
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.85 E-value=0.21 Score=50.30 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+++|+|+.|.|||||.+.++.-+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998744
No 475
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.83 E-value=0.18 Score=50.22 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=24.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 68 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKP-LKGEIIY 68 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEE
Confidence 46899999999999999998874432 2455554
No 476
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.74 E-value=0.22 Score=50.90 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=25.3
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|..|.|||||.+.++.-+.. ..+.+++
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i 68 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLI 68 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEE
Confidence 47999999999999999998874432 2455555
No 477
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=87.74 E-value=0.77 Score=51.27 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=45.5
Q ss_pred EEEEEEecCCchHHHHH-HHHHHhhcCccCceEEEEeehhhhccCCHHHHHHHHHHHhhc-------CCCCCC-------
Q 040255 175 CKLRIWGIGGISKITIA-GAVFNKISRHFEGSYFALNVREAEETGGIKDLQKKLLSELSK-------DGNMRN------- 239 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~-------~~~~~~------- 239 (869)
..++|.|..|+|||+|| ..+.+... -+..+.+..+++-. ..+..+.+.+...-.. ...+..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR~--~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQKK--SAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCCH--HHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCCc--HHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 35889999999999996 47777543 34443333443321 2334455555432110 011110
Q ss_pred ---HHHHHHHH--ccCceEEEecCCC
Q 040255 240 ---IESQLNRL--ARKKVRIVFDDVT 260 (869)
Q Consensus 240 ---~~~l~~~L--~~kr~LlVLDDv~ 260 (869)
.-.+.+++ +++.+||++||+.
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 11233444 4789999999994
No 478
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.72 E-value=0.77 Score=48.75 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 160 IEEIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 160 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
...|-.+|..+=..-.++.|+|.+|+||||||..++...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555554222334689999999999999999988753
No 479
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.63 E-value=0.45 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 174 VCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
.++|+|.|-||+||||+|..++..++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 367888999999999999999986654
No 480
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.60 E-value=0.34 Score=45.29 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHH
Q 040255 174 VCKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
.--|.|+|.+|+|||||..++..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34578999999999999999887
No 481
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.58 E-value=0.23 Score=51.06 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=24.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 74 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTV 74 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEE
Confidence 47999999999999999999874332 2345544
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.57 E-value=0.23 Score=47.76 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHHH
Q 040255 176 KLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~ 196 (869)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 483
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.53 E-value=0.45 Score=46.98 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=25.6
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCc
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEG 204 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 204 (869)
..|.|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 468899999999999999999988765543
No 484
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.49 E-value=0.23 Score=51.17 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=26.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFAL 209 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 209 (869)
.+++|+|..|.|||||.+.+..-+.. .+.+++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~ 79 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIG 79 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC--CeEEEEC
Confidence 47999999999999999999875542 4666653
No 485
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.45 E-value=0.35 Score=52.13 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHhhccCCCCeEEEEEEecCCchHHHHHHHHHHhh
Q 040255 162 EIESLLCIGSEGVCKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 162 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.|-.+|..+=..-.++.|+|..|+|||||+..++..+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444453222344789999999999999999998865
No 486
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.40 E-value=0.28 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
-.|.|+|.+|+|||||+.++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.26 E-value=0.33 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHH
Q 040255 174 VCKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35689999999999999999986
No 488
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.25 E-value=0.24 Score=51.35 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=25.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|..|.|||||.+.++.-+.. ..+.+++
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~ 78 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLL 78 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEE
Confidence 47999999999999999999874432 2345554
No 489
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.23 E-value=0.28 Score=55.49 Aligned_cols=28 Identities=7% Similarity=0.002 Sum_probs=24.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHHHhhcC
Q 040255 173 GVCKLRIWGIGGISKITIAGAVFNKISR 200 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 200 (869)
...+|.+.|+.|.||||+|+++..++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3468899999999999999999998764
No 490
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.17 E-value=0.61 Score=47.06 Aligned_cols=29 Identities=17% Similarity=0.081 Sum_probs=24.3
Q ss_pred CeEEEEEEe-cCCchHHHHHHHHHHhhcCc
Q 040255 173 GVCKLRIWG-IGGISKITIAGAVFNKISRH 201 (869)
Q Consensus 173 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~ 201 (869)
..++|+|+| -||+||||+|..++..++..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 457888886 59999999999999977665
No 491
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.14 E-value=0.25 Score=51.13 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=24.7
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|..|.|||||.+.++.-+.. ..+.+++
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~I~~ 66 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLY 66 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEE
Confidence 47999999999999999998864322 2344444
No 492
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.12 E-value=0.67 Score=49.62 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHhhc
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNKIS 199 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 199 (869)
....+++|+|.+|+|||||.+.+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4567899999999999999999987543
No 493
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.12 E-value=0.25 Score=50.60 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHHHhh
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.+++|+|..|.|||||.+.++.-+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999988743
No 494
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.04 E-value=1.3 Score=53.96 Aligned_cols=23 Identities=17% Similarity=-0.255 Sum_probs=20.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHH
Q 040255 173 GVCKLRIWGIGGISKITIAGAVF 195 (869)
Q Consensus 173 ~~~vv~I~G~gGiGKTtLA~~v~ 195 (869)
.-.+++|.|+.|.||||+.+.+.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999984
No 495
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.00 E-value=0.25 Score=51.40 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=25.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHhhcCccCceEEE
Q 040255 175 CKLRIWGIGGISKITIAGAVFNKISRHFEGSYFA 208 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 208 (869)
.+++|+|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 80 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNL 80 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEE
Confidence 47999999999999999999875432 2345554
No 496
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=86.97 E-value=0.79 Score=51.21 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=24.6
Q ss_pred EEEEEEecCCchHHHHH-HHHHHhhcCccCceEEEEeeh
Q 040255 175 CKLRIWGIGGISKITIA-GAVFNKISRHFEGSYFALNVR 212 (869)
Q Consensus 175 ~vv~I~G~gGiGKTtLA-~~v~~~~~~~F~~~~~~~~~~ 212 (869)
..++|.|..|+|||+|| ..+.+... -+..+.+..++
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~iG 200 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVAIG 200 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEEES
T ss_pred CEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEEcC
Confidence 35789999999999996 57777543 34443444443
No 497
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.92 E-value=0.34 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
+.+|+|..|.|||||+.+++--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998643
No 498
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.91 E-value=0.47 Score=45.44 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCeEEEEEEecCCchHHHHHHHHHHh
Q 040255 172 EGVCKLRIWGIGGISKITIAGAVFNK 197 (869)
Q Consensus 172 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 197 (869)
.....|+|+|.+|+|||||..++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999988753
No 499
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.84 E-value=0.35 Score=50.10 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEEecCCchHHHHHHHHHHhh
Q 040255 176 KLRIWGIGGISKITIAGAVFNKI 198 (869)
Q Consensus 176 vv~I~G~gGiGKTtLA~~v~~~~ 198 (869)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 500
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.83 E-value=0.33 Score=46.59 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHH
Q 040255 174 VCKLRIWGIGGISKITIAGAVFN 196 (869)
Q Consensus 174 ~~vv~I~G~gGiGKTtLA~~v~~ 196 (869)
.--|.|+|.+|+|||||..++.+
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999887
Done!