Query 040256
Match_columns 228
No_of_seqs 151 out of 1029
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 7E-72 1.5E-76 480.1 26.4 225 3-228 28-256 (256)
2 PLN00050 expansin A; Provision 100.0 5E-71 1.1E-75 473.1 25.4 223 3-228 23-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 7.2E-65 1.6E-69 434.6 24.1 210 2-228 22-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 2.5E-28 5.4E-33 196.2 19.0 192 6-228 31-230 (232)
5 PLN03024 Putative EG45-like do 99.9 1.5E-27 3.3E-32 185.6 11.4 102 4-127 20-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 4.8E-27 1E-31 172.3 7.8 85 40-125 1-87 (87)
7 PLN00115 pollen allergen group 99.9 1.7E-25 3.6E-30 172.0 11.2 92 129-228 21-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 2.4E-23 5.2E-28 151.3 9.7 77 136-213 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 8.9E-20 1.9E-24 131.2 6.6 75 40-125 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 1E-10 2.2E-15 88.5 3.1 60 50-130 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.3 3.6E-06 7.8E-11 65.0 8.2 66 39-129 44-113 (119)
12 COG0797 RlpA Lipoproteins [Cel 97.9 0.00012 2.6E-09 62.5 9.9 59 55-131 120-178 (233)
13 TIGR00413 rlpA rare lipoprotei 97.8 0.00025 5.4E-09 59.6 10.8 96 8-133 1-96 (208)
14 PRK10672 rare lipoprotein A; P 97.1 0.0066 1.4E-07 55.2 11.2 93 6-128 79-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.5 0.068 1.5E-06 44.9 3.0 54 40-108 70-123 (201)
16 cd02854 Glycogen_branching_enz 80.2 4.6 0.0001 29.9 5.1 48 160-207 16-76 (99)
17 cd02110 SO_family_Moco_dimer S 68.2 12 0.00025 33.8 5.4 51 155-205 233-293 (317)
18 PF03404 Mo-co_dimer: Mo-co ox 67.9 9.5 0.00021 29.8 4.2 49 156-204 38-105 (131)
19 PRK10564 maltose regulon perip 56.5 42 0.00091 30.2 6.6 75 122-225 47-125 (303)
20 cd02855 Glycogen_branching_enz 44.9 75 0.0016 22.8 5.6 34 173-206 49-85 (106)
21 TIGR02588 conserved hypothetic 44.7 1.5E+02 0.0032 23.1 7.3 57 143-200 49-118 (122)
22 cd02113 bact_SoxC_Moco bacteri 44.1 53 0.0011 29.8 5.4 51 155-205 235-294 (326)
23 PF10417 1-cysPrx_C: C-termina 41.7 15 0.00032 22.7 1.1 11 210-220 10-20 (40)
24 COG2372 CopC Uncharacterized p 41.4 43 0.00093 26.2 3.8 27 115-141 96-125 (127)
25 PRK10301 hypothetical protein; 41.2 45 0.00098 25.7 4.0 27 115-141 95-124 (124)
26 PF08770 SoxZ: Sulphur oxidati 36.9 1.6E+02 0.0034 21.8 6.2 45 158-209 53-97 (100)
27 PF04234 CopC: CopC domain; I 36.1 40 0.00086 24.6 2.8 26 116-141 69-97 (97)
28 PLN00177 sulfite oxidase; Prov 35.8 1E+02 0.0022 28.7 6.1 23 155-177 293-316 (393)
29 cd02114 bact_SorA_Moco sulfite 35.0 1.1E+02 0.0023 28.3 6.0 51 155-205 285-345 (367)
30 PF02922 CBM_48: Carbohydrate- 34.3 1.5E+02 0.0033 20.2 6.1 49 160-208 22-80 (85)
31 cd02861 E_set_proteins_like E 30.2 1.9E+02 0.0041 20.0 5.8 44 161-206 14-60 (82)
32 KOG0427 Ubiquitin conjugating 30.1 40 0.00087 26.6 2.0 36 193-228 34-69 (161)
33 cd02111 eukary_SO_Moco molybdo 29.9 1.6E+02 0.0034 27.1 6.3 51 155-205 273-339 (365)
34 cd02859 AMPKbeta_GBD_like AMP- 29.3 2E+02 0.0043 20.0 5.5 48 160-209 12-62 (79)
35 KOG4192 Uncharacterized conser 27.8 1.2E+02 0.0026 23.6 4.2 74 100-177 42-124 (134)
36 cd02860 Pullulanase_N_term Pul 26.0 1.8E+02 0.0039 20.9 4.9 33 173-205 39-73 (100)
37 PRK12568 glycogen branching en 25.6 1.6E+02 0.0036 29.7 5.9 46 161-206 150-201 (730)
38 PF06290 PsiB: Plasmid SOS inh 23.9 2.7E+02 0.0059 22.2 5.7 45 118-166 57-105 (143)
39 COG3895 Predicted periplasmic 22.6 57 0.0012 24.9 1.6 22 201-225 60-81 (112)
40 cd05841 BS69_related The PWWP 22.1 1E+02 0.0022 22.2 2.8 26 128-153 4-30 (83)
41 PRK13159 cytochrome c-type bio 20.7 1.3E+02 0.0028 24.4 3.4 28 193-220 73-101 (155)
42 PRK13701 psiB plasmid SOS inhi 20.7 3.4E+02 0.0075 21.6 5.6 45 118-166 57-105 (144)
43 cd02112 eukary_NR_Moco molybdo 20.2 3.4E+02 0.0073 25.2 6.5 20 158-177 300-320 (386)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=7e-72 Score=480.06 Aligned_cols=225 Identities=56% Similarity=1.114 Sum_probs=212.1
Q ss_pred CCceeeEEEEecCCCCCCCCccccCCCCCCCCCCCCeEEEcChhccCCCCCCCceEEEEEe--CCCccccCCCceEEEEE
Q 040256 3 GAWEDAHATFYGDMSGGETMQGACGYGDLKRQGYGLETAALSTALFNNGSTCGACFEIICV--NDPQWCLKGAGSIKITA 80 (228)
Q Consensus 3 ~~w~~g~aT~Yg~~~~~g~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~--~~~~~C~~g~~sv~v~V 80 (228)
++|++++|||||+++++|+++|||||+++...+++.++||+|+++|++|++||+||||+|. .++..|.+|+ +|+|+|
T Consensus 28 ~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~-sV~Vt~ 106 (256)
T PLN00193 28 SGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGA-SVTITA 106 (256)
T ss_pred CCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCC-eEEEEE
Confidence 5899999999999999999999999999888889999999999999999999999999995 2567898776 899999
Q ss_pred ecCCCCCCCCCCC--cCCCCCCCceeechhHHhhccCCCCCeeeEEEEEEEeccCCceEEEEcCCCceEEEEEEeeCCCc
Q 040256 81 TNFCPPNYTKTKD--IWCNPPQKHFDLSMPMFVKLAPSKAGIIPVRYRRILCSKQGGVKFEVKGNPNWTLVLVYNVGGAG 158 (228)
Q Consensus 81 ~D~Cp~~~~~~~~--~~C~~~~~~~DLs~~aF~~la~~~~G~v~v~~~~V~C~~~g~i~~~v~s~~~w~av~v~n~~G~~ 158 (228)
||+||+++.+|++ .||.+++.|||||..||.+||.+..|+|+|+||||+|+++|+|+|+|++++||++|+|.|++|++
T Consensus 107 td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~nv~G~g 186 (256)
T PLN00193 107 TNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISNVGGAG 186 (256)
T ss_pred ecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEEeCCCc
Confidence 9999998776633 49998899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCCceEEcCCCCCCeEEeCCCCCCccEEEEEEecCCcEEEEccccCCCCCCCeEEecccCC
Q 040256 159 DVTAVQVKGSSTGWLPMSRNWGQNWQTGTVLLGQGLSFQVTTSDGKTLQFDNVAPRNWQFGQTFQGRGNF 228 (228)
Q Consensus 159 ~I~~Vev~~~~~~w~~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~~vip~~w~~g~~y~~~vqf 228 (228)
+|++|+||++++.|++|+|+||++|+++.+|.++||+||||+.+|+++++.||||++|++|+||++.|||
T Consensus 187 dV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 187 SIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred cEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 9999999998778999999999999999878888999999999999999999999999999999999998
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=5e-71 Score=473.05 Aligned_cols=223 Identities=63% Similarity=1.173 Sum_probs=209.9
Q ss_pred CCceeeEEEEecCCCCCCCCccccCCCCCCCCCCCCeEEEcChhccCCCCCCCceEEEEEeCCCccccCCCceEEEEEec
Q 040256 3 GAWEDAHATFYGDMSGGETMQGACGYGDLKRQGYGLETAALSTALFNNGSTCGACFEIICVNDPQWCLKGAGSIKITATN 82 (228)
Q Consensus 3 ~~w~~g~aT~Yg~~~~~g~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~D 82 (228)
.+|..++|||||++++.|+++|||||+++..++++.++||+|+++|++|++||+||||+|.+++..|.++ +|+|+|||
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~g--sV~V~itd 100 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPG--SIIITATN 100 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCC--cEEEEEec
Confidence 5899999999999999999999999999888899999999999999999999999999997666789865 79999999
Q ss_pred CCCCCCCCCCC--cCCCCCCCceeechhHHhhccCCCCCeeeEEEEEEEeccCCceEEEEcCCCceEEEEEEeeCCCcce
Q 040256 83 FCPPNYTKTKD--IWCNPPQKHFDLSMPMFVKLAPSKAGIIPVRYRRILCSKQGGVKFEVKGNPNWTLVLVYNVGGAGDV 160 (228)
Q Consensus 83 ~Cp~~~~~~~~--~~C~~~~~~~DLs~~aF~~la~~~~G~v~v~~~~V~C~~~g~i~~~v~s~~~w~av~v~n~~G~~~I 160 (228)
+||+++..|++ .||.+++.|||||..||.+||.+..|+|+|+||||+|+++|+|+|+|++++||++|+|.|++|+++|
T Consensus 101 ~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~gdi 180 (247)
T PLN00050 101 FCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDI 180 (247)
T ss_pred CCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCccE
Confidence 99998776633 4999889999999999999999999999999999999999999999998889999999999999999
Q ss_pred EEEEEEcCCCceEEcCCCCCCeEEeCCCCCCccEEEEEEecCCcEEEEccccCCCCCCCeEEecccCC
Q 040256 161 TAVQVKGSSTGWLPMSRNWGQNWQTGTVLLGQGLSFQVTTSDGKTLQFDNVAPRNWQFGQTFQGRGNF 228 (228)
Q Consensus 161 ~~Vev~~~~~~w~~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~~vip~~w~~g~~y~~~vqf 228 (228)
++|+|+++++.|++|+|+||++|+++.+|.++||+||||+.+|+++++.||||++|++|++|++. ||
T Consensus 181 ~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~-~f 247 (247)
T PLN00050 181 VAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGM-QF 247 (247)
T ss_pred EEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecC-cC
Confidence 99999998778999999999999998877788999999999999999999999999999999996 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=7.2e-65 Score=434.61 Aligned_cols=210 Identities=28% Similarity=0.598 Sum_probs=190.7
Q ss_pred CCCceeeEEEEecCCCCCCCCccccCCCCCCCCCCCCeEEEcChhccCCCCCCCceEEEEEeCCCccccCCCceEEEEEe
Q 040256 2 NGAWEDAHATFYGDMSGGETMQGACGYGDLKRQGYGLETAALSTALFNNGSTCGACFEIICVNDPQWCLKGAGSIKITAT 81 (228)
Q Consensus 2 ~~~w~~g~aT~Yg~~~~~g~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~ 81 (228)
.++|++++|||||+++++|+++|||||+++..+.++..+||++ +||++|++||+||||+|. ++..|.++ +|+|+||
T Consensus 22 ~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~-~~~~C~~~--~v~V~iT 97 (247)
T PLN03023 22 SQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCK-APNLCSDD--GVNVVVT 97 (247)
T ss_pred cCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecC-CCCccCCC--CeEEEEE
Confidence 3579999999999999999999999999988888899999999 999999999999999998 57899964 6999999
Q ss_pred cCCCCCCCCCCCcCCCCCCCceeechhHHhhccC-------CCCCeeeEEEEEEEeccCC-ceEEEEc--CC-CceEEEE
Q 040256 82 NFCPPNYTKTKDIWCNPPQKHFDLSMPMFVKLAP-------SKAGIIPVRYRRILCSKQG-GVKFEVK--GN-PNWTLVL 150 (228)
Q Consensus 82 D~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~-------~~~G~v~v~~~~V~C~~~g-~i~~~v~--s~-~~w~av~ 150 (228)
|.||. + +.|||||.+||.+||. +..|+|+|+||||+|.++| +|+|+|+ ++ ++|++|+
T Consensus 98 d~~~~---------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vl 165 (247)
T PLN03023 98 DYGEG---------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIV 165 (247)
T ss_pred eCCCC---------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEE
Confidence 99983 3 5899999999999998 5679999999999999999 9999998 43 7899999
Q ss_pred EEeeCCCcceEEEEEEcCC-CceEEcCCCCCCeEEeCCCCCCccEEEEEE--ecCCcE-EEEccccCCCCCCCeEEeccc
Q 040256 151 VYNVGGAGDVTAVQVKGSS-TGWLPMSRNWGQNWQTGTVLLGQGLSFQVT--TSDGKT-LQFDNVAPRNWQFGQTFQGRG 226 (228)
Q Consensus 151 v~n~~G~~~I~~Vev~~~~-~~w~~m~r~~g~~W~~~~~~~g~p~~vRvT--~~~G~~-v~~~~vip~~w~~g~~y~~~v 226 (228)
|.|++|+++|++||||+++ ..|++|+|+||++|+++.+|+| ||+||++ ..+|++ |+++||||++|++|+||+++|
T Consensus 166 v~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~v 244 (247)
T PLN03023 166 MLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNI 244 (247)
T ss_pred EEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEeccc
Confidence 9999999999999999965 5899999999999999988888 6666664 456755 889999999999999999999
Q ss_pred CC
Q 040256 227 NF 228 (228)
Q Consensus 227 qf 228 (228)
||
T Consensus 245 q~ 246 (247)
T PLN03023 245 QL 246 (247)
T ss_pred cc
Confidence 98
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=196.20 Aligned_cols=192 Identities=23% Similarity=0.323 Sum_probs=157.6
Q ss_pred eeeEEEEecCCCCCCCCccccCCCCCCCCCCCCeEEEcChhccCC----CCCCCceEEEEEeCCCccccCCCceEEEEEe
Q 040256 6 EDAHATFYGDMSGGETMQGACGYGDLKRQGYGLETAALSTALFNN----GSTCGACFEIICVNDPQWCLKGAGSIKITAT 81 (228)
Q Consensus 6 ~~g~aT~Yg~~~~~g~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~----g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~ 81 (228)
..|.|||-|.. ..+||=.+ ++.+-+..+.|+++++-+- .+.-|+.++|. +|+ | +.+|.||
T Consensus 31 f~G~ATyTgsG----YsGGAflL---DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq---GPK----G--~TTVYVT 94 (232)
T COG4305 31 FEGYATYTGSG----YSGGAFLL---DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ---GPK----G--KTTVYVT 94 (232)
T ss_pred cceeEEEeccc----ccCceEEe---cCcCCcceeeecCHHHcccCCchhhhccceEEEE---CCC----C--ceEEEEe
Confidence 56888887643 35787754 4444567899999988774 37799999999 675 5 5899999
Q ss_pred cCCCCCCCCCCCcCCCCCCCceeechhHHhhccCCCCCeeeEEEEEEEeccCCceEEEEc--CCCceEEEEEEeeCCCcc
Q 040256 82 NFCPPNYTKTKDIWCNPPQKHFDLSMPMFVKLAPSKAGIIPVRYRRILCSKQGGVKFEVK--GNPNWTLVLVYNVGGAGD 159 (228)
Q Consensus 82 D~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~v~~~~V~C~~~g~i~~~v~--s~~~w~av~v~n~~G~~~ 159 (228)
|+.|++ . .+.||||+.||.+|++..+|+|+|+||.|+-|..||+.++|| |+.||.+|||+|+. .+
T Consensus 95 DlYPeg---------a--sGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~--yP 161 (232)
T COG4305 95 DLYPEG---------A--SGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK--YP 161 (232)
T ss_pred cccccc---------c--ccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc--Cc
Confidence 999984 2 489999999999999999999999999999999999999999 67899999999999 99
Q ss_pred eEEEEEEcCCCceEEcCCCCCCeEEeCCCCCCccEEEEEEecCCcEEEEc-cccCCCCC-CCeEEecccCC
Q 040256 160 VTAVQVKGSSTGWLPMSRNWGQNWQTGTVLLGQGLSFQVTTSDGKTLQFD-NVAPRNWQ-FGQTFQGRGNF 228 (228)
Q Consensus 160 I~~Vev~~~~~~w~~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~-~vip~~w~-~g~~y~~~vqf 228 (228)
|.++|+.+. +.|..|.+.++|+|.-.+ |...||.+|||++.|+.++.. -.+|..=. -..+-.+.|||
T Consensus 162 V~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~asSKaY~V~G~VQF 230 (232)
T COG4305 162 VMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSASSKAYTVPGHVQF 230 (232)
T ss_pred eEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeecccccccccccCCceeecceeec
Confidence 999999975 789999999999998766 333599999999999988864 35553311 12345677777
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=1.5e-27 Score=185.56 Aligned_cols=102 Identities=35% Similarity=0.682 Sum_probs=86.1
Q ss_pred CceeeEEEEecCCCCCCCCccccCCCCCCCCCCCCeEEEcChhccCCCCCCCceEEEEEeCC----CccccCCCceEEEE
Q 040256 4 AWEDAHATFYGDMSGGETMQGACGYGDLKRQGYGLETAALSTALFNNGSTCGACFEIICVND----PQWCLKGAGSIKIT 79 (228)
Q Consensus 4 ~w~~g~aT~Yg~~~~~g~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~----~~~C~~g~~sv~v~ 79 (228)
.-+.|+||||++.+ .||| |++ .+++.++||+|+++|++|+.||+||||+|.+. +..|. ++ +|+|+
T Consensus 20 ~~~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~-gk-sV~V~ 88 (125)
T PLN03024 20 YATPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCT-GK-SVTVK 88 (125)
T ss_pred cccceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccccccc-CC-eEEEE
Confidence 35679999998653 5899 544 24688999999999999999999999999731 24687 55 89999
Q ss_pred EecCCCCCCCCCCCcCCCCCCCceeechhHHhhccCCCCCeeeEEEEE
Q 040256 80 ATNFCPPNYTKTKDIWCNPPQKHFDLSMPMFVKLAPSKAGIIPVRYRR 127 (228)
Q Consensus 80 V~D~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~v~~~~ 127 (228)
|+|+||+ .|. .|||||++||.+||+++.|+|+|+|.+
T Consensus 89 VtD~CP~--------~C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 89 IVDHCPS--------GCA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred EEcCCCC--------CCC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 9999995 275 599999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.94 E-value=4.8e-27 Score=172.27 Aligned_cols=85 Identities=69% Similarity=1.364 Sum_probs=76.2
Q ss_pred EEEcChhccCCCCCCCceEEEEEeCCCccccCCCceEEEEEecCCCCCCCCCCC--cCCCCCCCceeechhHHhhccCCC
Q 040256 40 TAALSTALFNNGSTCGACFEIICVNDPQWCLKGAGSIKITATNFCPPNYTKTKD--IWCNPPQKHFDLSMPMFVKLAPSK 117 (228)
Q Consensus 40 ~aA~s~~~~~~g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~--~~C~~~~~~~DLs~~aF~~la~~~ 117 (228)
+||+|++||++|++||+||||+|.+++..|.+++ +|+|+|||+||+++..+++ .||.+++.|||||..||.+||.+.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~-~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~ 79 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGG-SITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYK 79 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCC-eEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhc
Confidence 4899999999999999999999976788899765 8999999999987655543 499988899999999999999999
Q ss_pred CCeeeEEE
Q 040256 118 AGIIPVRY 125 (228)
Q Consensus 118 ~G~v~v~~ 125 (228)
.|+|+|+|
T Consensus 80 ~Gvi~v~y 87 (87)
T smart00837 80 AGIVPVKY 87 (87)
T ss_pred CCEEeeEC
Confidence 99999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.93 E-value=1.7e-25 Score=172.04 Aligned_cols=92 Identities=18% Similarity=0.387 Sum_probs=81.8
Q ss_pred EeccCCceEEEEc--CCCceEEEEEEeeCCCcceEEEEEEcCC-CceE-EcCCCCCCeEEeCC--CCCCccEEEEEEecC
Q 040256 129 LCSKQGGVKFEVK--GNPNWTLVLVYNVGGAGDVTAVQVKGSS-TGWL-PMSRNWGQNWQTGT--VLLGQGLSFQVTTSD 202 (228)
Q Consensus 129 ~C~~~g~i~~~v~--s~~~w~av~v~n~~G~~~I~~Vev~~~~-~~w~-~m~r~~g~~W~~~~--~~~g~p~~vRvT~~~ 202 (228)
+|.. +|+|+|+ +|++||+|++ | ++|.+|||++++ ..|+ +|+|+||++|++++ +|+| ||+||+|+.+
T Consensus 21 ~~g~--~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~ 92 (118)
T PLN00115 21 SCAT--EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKG 92 (118)
T ss_pred hcCC--ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeC
Confidence 4632 7999999 6799997765 3 569999999986 5899 99999999999865 6777 9999999999
Q ss_pred CcEEEEccccCCCCCCCeEEecccCC
Q 040256 203 GKTLQFDNVAPRNWQFGQTFQGRGNF 228 (228)
Q Consensus 203 G~~v~~~~vip~~w~~g~~y~~~vqf 228 (228)
|++++++||||++||+|++|++++||
T Consensus 93 G~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 93 GGYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CCEEEECceECCCCCCCCEEeccccC
Confidence 99999999999999999999999998
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.90 E-value=2.4e-23 Score=151.30 Aligned_cols=77 Identities=53% Similarity=0.923 Sum_probs=64.0
Q ss_pred eEEEEc--CCCceEEEEEEeeCCCcceEEEEEEcCCC-ceEEcCCCCCCeEEeC-CCCCCccEEEEEEecC-CcEEEEcc
Q 040256 136 VKFEVK--GNPNWTLVLVYNVGGAGDVTAVQVKGSST-GWLPMSRNWGQNWQTG-TVLLGQGLSFQVTTSD-GKTLQFDN 210 (228)
Q Consensus 136 i~~~v~--s~~~w~av~v~n~~G~~~I~~Vev~~~~~-~w~~m~r~~g~~W~~~-~~~~g~p~~vRvT~~~-G~~v~~~~ 210 (228)
|+|+|+ |++|||+|+|.|++|+++|++|||+++++ +|++|+|+||++|+++ +++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689998 67999999999999999999999998874 6999999999999998 55554 9999999977 99999999
Q ss_pred ccC
Q 040256 211 VAP 213 (228)
Q Consensus 211 vip 213 (228)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.80 E-value=8.9e-20 Score=131.16 Aligned_cols=75 Identities=39% Similarity=0.823 Sum_probs=61.2
Q ss_pred EEEcChhccCCCCCCCceEEEEEeC-CCcc--ccCCCceEEEEEecCCCCCCCCCCCcCCCCCCCceeechhHHhhccCC
Q 040256 40 TAALSTALFNNGSTCGACFEIICVN-DPQW--CLKGAGSIKITATNFCPPNYTKTKDIWCNPPQKHFDLSMPMFVKLAPS 116 (228)
Q Consensus 40 ~aA~s~~~~~~g~~CG~C~~v~c~~-~~~~--C~~g~~sv~v~V~D~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~ 116 (228)
+||++..+|++|.+||+||+++|.. .... |..++++|+|+|+|+||+ |. .+|||||+.||++|+.+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~---------~~--~~~lDLS~~aF~~la~~ 69 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG---------CP--PNHLDLSPAAFKALADP 69 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT---------SS--SSEEEEEHHHHHHTBST
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC---------Cc--CCEEEeCHHHHHHhCCC
Confidence 5899999999999999999999932 2222 774214999999999996 87 58999999999999999
Q ss_pred CCCeeeEEE
Q 040256 117 KAGIIPVRY 125 (228)
Q Consensus 117 ~~G~v~v~~ 125 (228)
+.|+++|+|
T Consensus 70 ~~G~i~V~w 78 (78)
T PF03330_consen 70 DAGVIPVEW 78 (78)
T ss_dssp TCSSEEEEE
T ss_pred CceEEEEEC
Confidence 999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.05 E-value=1e-10 Score=88.52 Aligned_cols=60 Identities=22% Similarity=0.536 Sum_probs=43.7
Q ss_pred CCCCCCceEEEEEeCCCccccCCCceEEEEEecCCCCCCCCCCCcCCCCCCCceeechhHHhhccC----CCCCeeeEEE
Q 040256 50 NGSTCGACFEIICVNDPQWCLKGAGSIKITATNFCPPNYTKTKDIWCNPPQKHFDLSMPMFVKLAP----SKAGIIPVRY 125 (228)
Q Consensus 50 ~g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~----~~~G~v~v~~ 125 (228)
.-..||+|++|+-.. +|. +++|+|+|+|+. ++|||.+.+|.+|-. ...|.+.|.|
T Consensus 56 gq~~CGkClrVTNt~------tga-~~~~RIVDqCsn--------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y 114 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA------TGA-QVTVRIVDQCSN--------------GGLDLDPTVFNQIDTDGQGYAQGHLIVDY 114 (119)
T ss_dssp SGGGTT-EEEEE-TT------T---EEEEEEEEE-SS--------------SSEES-SSSHHHH-SSSHHHHHTEEEEEE
T ss_pred CcccccceEEEEecC------CCc-EEEEEEEEcCCC--------------CCcccChhHHhhhccCCcccccceEEEEE
Confidence 457899999999542 355 899999999984 689999999999953 3568999999
Q ss_pred EEEEe
Q 040256 126 RRILC 130 (228)
Q Consensus 126 ~~V~C 130 (228)
++|+|
T Consensus 115 ~fV~C 119 (119)
T PF00967_consen 115 EFVDC 119 (119)
T ss_dssp EEE--
T ss_pred EEEcC
Confidence 99998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.31 E-value=3.6e-06 Score=65.02 Aligned_cols=66 Identities=21% Similarity=0.424 Sum_probs=47.3
Q ss_pred eEEEcCh-hccCCCCCCCceEEEEEeCCCccccCCCceEEEEEecCCCCCCCCCCCcCCCCCCCceeechhHHhhccC--
Q 040256 39 ETAALST-ALFNNGSTCGACFEIICVNDPQWCLKGAGSIKITATNFCPPNYTKTKDIWCNPPQKHFDLSMPMFVKLAP-- 115 (228)
Q Consensus 39 ~~aA~s~-~~~~~g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~-- 115 (228)
+|.+... +-| |+..||.|+|++-. |+ +|.|..+|.-+ ..|+|+.+||+.|..
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty~--------g~-si~vlaID~a~---------------~gfnis~~A~n~LT~g~ 98 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTYN--------GR-SIYVLAIDHAG---------------GGFNISLDAMNDLTNGQ 98 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEET--------TE-EEEEEEEEE-S---------------SSEEE-HHHHHHHHTS-
T ss_pred eeccccccccC-CCCCCCCeEEEEEC--------Ce-EEEEEEEecCC---------------CcccchHHHHHHhcCCc
Confidence 5555554 456 56799999999973 55 89999999854 469999999999976
Q ss_pred -CCCCeeeEEEEEEE
Q 040256 116 -SKAGIIPVRYRRIL 129 (228)
Q Consensus 116 -~~~G~v~v~~~~V~ 129 (228)
...|+|+++|++|+
T Consensus 99 a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 99 AVELGRVDATYTQVD 113 (119)
T ss_dssp CCCC-EEE-EEEEE-
T ss_pred ccceeEEEEEEEEcC
Confidence 46799999999996
No 12
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=0.00012 Score=62.52 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=50.3
Q ss_pred CceEEEEEeCCCccccCCCceEEEEEecCCCCCCCCCCCcCCCCCCCceeechhHHhhccCCCCCeeeEEEEEEEec
Q 040256 55 GACFEIICVNDPQWCLKGAGSIKITATNFCPPNYTKTKDIWCNPPQKHFDLSMPMFVKLAPSKAGIIPVRYRRILCS 131 (228)
Q Consensus 55 G~C~~v~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~v~~~~V~C~ 131 (228)
|.-.+|+..+ +|+ +|+|+|.|++| +.. ...||||..|+++|+-...|+.+|+.+.+.+.
T Consensus 120 ~t~v~VtNl~------Ngr-svvVRINDRGP----------f~~-gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLD------NGR-SVVVRINDRGP----------FVS-GRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEcc------CCc-EEEEEEeCCCC----------CCC-CcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 6678999664 355 99999999999 443 36899999999999999999999999999876
No 13
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.83 E-value=0.00025 Score=59.61 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=67.6
Q ss_pred eEEEEecCCCCCCCCccccCCCCCCCCCCCCeEEEcChhccCCCCCCCceEEEEEeCCCccccCCCceEEEEEecCCCCC
Q 040256 8 AHATFYGDMSGGETMQGACGYGDLKRQGYGLETAALSTALFNNGSTCGACFEIICVNDPQWCLKGAGSIKITATNFCPPN 87 (228)
Q Consensus 8 g~aT~Yg~~~~~g~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~D~Cp~~ 87 (228)
|.|+|||..-. | ..-|.|=.- + ...++||-.+ ...|...+|+... +|+ +|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~y-~---~~~~tAAHkt------LPlgT~V~VtNl~------ngr-sviVrVnDRGPf~ 61 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEVY-N---MKALTAAHKT------LPFNTYVKVTNLH------NNR-SVIVRINDRGPFS 61 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCeec-C---CCcccccccc------CCCCCEEEEEECC------CCC-EEEEEEeCCCCCC
Confidence 67999985311 0 123343211 1 1234544432 3679999999653 355 8999999999962
Q ss_pred CCCCCCcCCCCCCCceeechhHHhhccCCCCCeeeEEEEEEEeccC
Q 040256 88 YTKTKDIWCNPPQKHFDLSMPMFVKLAPSKAGIIPVRYRRILCSKQ 133 (228)
Q Consensus 88 ~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~v~~~~V~C~~~ 133 (228)
+..-+|||..|+.+|+-...|+.+|+.+.+.....
T Consensus 62 -----------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 -----------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred -----------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 13689999999999999999999999999987653
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.11 E-value=0.0066 Score=55.23 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=61.4
Q ss_pred eeeEEEEecCCCCCCCCccccCCCCCCCCCCCCeEEEcChhccCCCCCCCceEEEEEeCCCccccCCCceEEEEEecCCC
Q 040256 6 EDAHATFYGDMSGGETMQGACGYGDLKRQGYGLETAALSTALFNNGSTCGACFEIICVNDPQWCLKGAGSIKITATNFCP 85 (228)
Q Consensus 6 ~~g~aT~Yg~~~~~g~~~GaCgy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~D~Cp 85 (228)
..|.|+|||..-.+ ..-|.| ..+. ...++||-.+ .--|...+|+..+ +|+ +|+|+|.|++|
T Consensus 79 ~~G~ASwYg~~f~G--~~TA~G--e~~~--~~~~tAAH~t------LPlps~vrVtNl~------ngr-svvVrVnDRGP 139 (361)
T PRK10672 79 QAGLAAIYDAEAGS--NLTASG--ERFD--PNALTAAHPT------LPIPSYVRVTNLA------NGR-MIVVRINDRGP 139 (361)
T ss_pred eEEEEEEeCCccCC--CcCcCc--eeec--CCcCeeeccC------CCCCCEEEEEECC------CCc-EEEEEEeCCCC
Confidence 36999999964211 012222 1110 1235555443 2458899999653 355 99999999999
Q ss_pred CCCCCCCCcCCCCCCCceeechhHHhhccCCCCCeeeEEEEEE
Q 040256 86 PNYTKTKDIWCNPPQKHFDLSMPMFVKLAPSKAGIIPVRYRRI 128 (228)
Q Consensus 86 ~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~v~~~~V 128 (228)
-. +..-||||..|+.+|+-...+.|.|+.-.|
T Consensus 140 ~~-----------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v 171 (361)
T PRK10672 140 YG-----------PGRVIDLSRAAADRLNTSNNTKVRIDPIIV 171 (361)
T ss_pred CC-----------CCCeeEcCHHHHHHhCCCCCceEEEEEEee
Confidence 62 146899999999999887667777776666
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.47 E-value=0.068 Score=44.85 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=31.6
Q ss_pred EEEcChhccCCCCCCCceEEEEEeCCCccccCCCceEEEEEecCCCCCCCCCCCcCCCCCCCceeechh
Q 040256 40 TAALSTALFNNGSTCGACFEIICVNDPQWCLKGAGSIKITATNFCPPNYTKTKDIWCNPPQKHFDLSMP 108 (228)
Q Consensus 40 ~aA~s~~~~~~g~~CG~C~~v~c~~~~~~C~~g~~sv~v~V~D~Cp~~~~~~~~~~C~~~~~~~DLs~~ 108 (228)
+||.+-.-......|++|||++-++++. .|+ ..+|+|++.=-+- ..+||||..+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l---~GK-kmiVQ~tNtG~dl-----------g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPL---KGK-KMIVQVTNTGGDL-----------GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTT---TT--EEEEEEEEE-TTT-----------TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCc---CCC-EeEEEecccCCCC-----------CCCeEEEEeC
Confidence 3455422222336799999999886454 466 7999999975431 2479998764
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=80.24 E-value=4.6 Score=29.95 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=34.4
Q ss_pred eEEEEEEcCCCceE----EcCCCCCCeEEeCCC---------CCCccEEEEEEecCCcEEE
Q 040256 160 VTAVQVKGSSTGWL----PMSRNWGQNWQTGTV---------LLGQGLSFQVTTSDGKTLQ 207 (228)
Q Consensus 160 I~~Vev~~~~~~w~----~m~r~~g~~W~~~~~---------~~g~p~~vRvT~~~G~~v~ 207 (228)
-++|+|.++-..|. +|.|...-.|++.-+ ..+..+.+||+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 35778876545675 488877778976422 2567999999998887754
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=68.19 E-value=12 Score=33.75 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=32.7
Q ss_pred CCCcceEEEEEEcCCC-ceEEcCCCCCC-------eEEeCCCC-CC-ccEEEEEEecCCcE
Q 040256 155 GGAGDVTAVQVKGSST-GWLPMSRNWGQ-------NWQTGTVL-LG-QGLSFQVTTSDGKT 205 (228)
Q Consensus 155 ~G~~~I~~Vev~~~~~-~w~~m~r~~g~-------~W~~~~~~-~g-~p~~vRvT~~~G~~ 205 (228)
.|...|++|||..+++ +|++..-.... .|++.-.+ +| --+.+|.+|..|.+
T Consensus 233 ~g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 233 SGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 3446799999999875 89986653221 45554322 33 25666888888743
No 18
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=67.90 E-value=9.5 Score=29.81 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=28.1
Q ss_pred CCc-ceEEEEEEcCCC-ceEEcCCCC--C-----------CeEEeCCC---CCC-ccEEEEEEecCCc
Q 040256 156 GAG-DVTAVQVKGSST-GWLPMSRNW--G-----------QNWQTGTV---LLG-QGLSFQVTTSDGK 204 (228)
Q Consensus 156 G~~-~I~~Vev~~~~~-~w~~m~r~~--g-----------~~W~~~~~---~~g-~p~~vRvT~~~G~ 204 (228)
|.+ +|.+|||..+++ +|++..... . -.|++.-. ++| .-|.+|-||.+|.
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~ 105 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGN 105 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeecccc
Confidence 335 899999998874 798755432 2 13655322 134 2455677888774
No 19
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.49 E-value=42 Score=30.16 Aligned_cols=75 Identities=15% Similarity=0.261 Sum_probs=39.5
Q ss_pred eEEEEEEEeccCCceEEEEc-CCCceEEEEEEeeCCCcceEEEEEEcCCCceEEcCCCCCCeEEeCCCCCCccEEEEEEe
Q 040256 122 PVRYRRILCSKQGGVKFEVK-GNPNWTLVLVYNVGGAGDVTAVQVKGSSTGWLPMSRNWGQNWQTGTVLLGQGLSFQVTT 200 (228)
Q Consensus 122 ~v~~~~V~C~~~g~i~~~v~-s~~~w~av~v~n~~G~~~I~~Vev~~~~~~w~~m~r~~g~~W~~~~~~~g~p~~vRvT~ 200 (228)
.+.|+.|. .+..+.|.+. +++.+ ....|.+.|...+|-.. .| +++|+|+|
T Consensus 47 ~l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS 97 (303)
T PRK10564 47 QLTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN---------------------IG-ELTLTLSS 97 (303)
T ss_pred cCCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc---------------------cc-cEEEEEEE
Confidence 35677664 4456777777 55544 12233355555444332 13 67777776
Q ss_pred -cCCcEEEEccc--cCCCCCCCeEEecc
Q 040256 201 -SDGKTLQFDNV--APRNWQFGQTFQGR 225 (228)
Q Consensus 201 -~~G~~v~~~~v--ip~~w~~g~~y~~~ 225 (228)
..++.|.+.+| +=++|++-++|.+.
T Consensus 98 ~v~~~~VfaPnVlvLD~~~~~~~~y~s~ 125 (303)
T PRK10564 98 LVNDKSVFAPNVLVLDQNMRPAAFYPSS 125 (303)
T ss_pred EecCCcEEeceEEEEcCCCCEEEEeccc
Confidence 22335555543 33666666666554
No 20
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=44.92 E-value=75 Score=22.78 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEcCCCC-CCeEEe--CCCCCCccEEEEEEecCCcEE
Q 040256 173 LPMSRNW-GQNWQT--GTVLLGQGLSFQVTTSDGKTL 206 (228)
Q Consensus 173 ~~m~r~~-g~~W~~--~~~~~g~p~~vRvT~~~G~~v 206 (228)
.+|.+.. ...|.+ +....+..+.+|++...|...
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677655 667874 332233469999987555544
No 21
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=44.71 E-value=1.5e+02 Score=23.08 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=35.0
Q ss_pred CCceEEEEEEeeCCCcceEEEEEEcC---C--------CceEEcCCCC--CCeEEeCCCCCCccEEEEEEe
Q 040256 143 NPNWTLVLVYNVGGAGDVTAVQVKGS---S--------TGWLPMSRNW--GQNWQTGTVLLGQGLSFQVTT 200 (228)
Q Consensus 143 ~~~w~av~v~n~~G~~~I~~Vev~~~---~--------~~w~~m~r~~--g~~W~~~~~~~g~p~~vRvT~ 200 (228)
-+||.-|.|.|.+| ...++|+|.+. + .+.--+.+.. -..+-....|...-|.||+.+
T Consensus 49 gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L~irv~g 118 (122)
T TIGR02588 49 GQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQLRLRVAG 118 (122)
T ss_pred CEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeEEEEEEe
Confidence 45999999999876 56899999853 1 0122233332 123444443443478888876
No 22
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=44.11 E-value=53 Score=29.77 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=30.3
Q ss_pred CCCcceEEEEEEcCCC-ceEEcCCCC---CC---eEEeCCCC-CC-ccEEEEEEecCCcE
Q 040256 155 GGAGDVTAVQVKGSST-GWLPMSRNW---GQ---NWQTGTVL-LG-QGLSFQVTTSDGKT 205 (228)
Q Consensus 155 ~G~~~I~~Vev~~~~~-~w~~m~r~~---g~---~W~~~~~~-~g-~p~~vRvT~~~G~~ 205 (228)
.|.+.|.+|||..+++ +|+...... .. .|++.-.+ .+ --+.+|-||..|++
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 3456799999998875 799865431 11 23332112 23 24555778887743
No 23
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=41.69 E-value=15 Score=22.66 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=9.6
Q ss_pred cccCCCCCCCe
Q 040256 210 NVAPRNWQFGQ 220 (228)
Q Consensus 210 ~vip~~w~~g~ 220 (228)
.+.|++|++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999986
No 24
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=41.39 E-value=43 Score=26.23 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=23.3
Q ss_pred CCCCCeeeEEEEEEEecc---CCceEEEEc
Q 040256 115 PSKAGIIPVRYRRILCSK---QGGVKFEVK 141 (228)
Q Consensus 115 ~~~~G~v~v~~~~V~C~~---~g~i~~~v~ 141 (228)
++..|.+-+.||.|+-+- .|.|.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 478999999999999874 678999886
No 25
>PRK10301 hypothetical protein; Provisional
Probab=41.19 E-value=45 Score=25.72 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.2
Q ss_pred CCCCCeeeEEEEEEEecc---CCceEEEEc
Q 040256 115 PSKAGIIPVRYRRILCSK---QGGVKFEVK 141 (228)
Q Consensus 115 ~~~~G~v~v~~~~V~C~~---~g~i~~~v~ 141 (228)
.+..|.+.|+||-|+=+- .|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999763 677888875
No 26
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=36.87 E-value=1.6e+02 Score=21.85 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=25.1
Q ss_pred cceEEEEEEcCCCceEEcCCCCCCeEEeCCCCCCccEEEEEEecCCcEEEEc
Q 040256 158 GDVTAVQVKGSSTGWLPMSRNWGQNWQTGTVLLGQGLSFQVTTSDGKTLQFD 209 (228)
Q Consensus 158 ~~I~~Vev~~~~~~w~~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~ 209 (228)
..|.++++..+ +..+.+-.|.+...-.| +|+|+.+|++|+.....
T Consensus 53 ~~v~~~~~~~s------iS~NP~l~F~~~~~~~g-~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 53 KPVFRADWGPS------ISENPYLRFSFKGKKSG-TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEE-TT------B-SS-EEEEEEEESSSE-EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEeCCc------ccCCCcEEEEEecCCCc-EEEEEEEECCCCEEEEE
Confidence 45555555433 44544445555443334 89999999999877654
No 27
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=36.08 E-value=40 Score=24.57 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.8
Q ss_pred CCCCeeeEEEEEEEecc---CCceEEEEc
Q 040256 116 SKAGIIPVRYRRILCSK---QGGVKFEVK 141 (228)
Q Consensus 116 ~~~G~v~v~~~~V~C~~---~g~i~~~v~ 141 (228)
+..|.+.|+||-|+=+- .|.+.|.|+
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 67899999999999643 456888775
No 28
>PLN00177 sulfite oxidase; Provisional
Probab=35.76 E-value=1e+02 Score=28.68 Aligned_cols=23 Identities=26% Similarity=0.578 Sum_probs=17.3
Q ss_pred CCCcceEEEEEEcCCC-ceEEcCC
Q 040256 155 GGAGDVTAVQVKGSST-GWLPMSR 177 (228)
Q Consensus 155 ~G~~~I~~Vev~~~~~-~w~~m~r 177 (228)
+|...|.+|||..+++ +|+....
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeeee
Confidence 4434799999998875 8997643
No 29
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=34.99 E-value=1.1e+02 Score=28.27 Aligned_cols=51 Identities=24% Similarity=0.458 Sum_probs=31.0
Q ss_pred CCCcceEEEEEEcCCC-ceEEcCCC--CCC----eEEeCC-C-CCC-ccEEEEEEecCCcE
Q 040256 155 GGAGDVTAVQVKGSST-GWLPMSRN--WGQ----NWQTGT-V-LLG-QGLSFQVTTSDGKT 205 (228)
Q Consensus 155 ~G~~~I~~Vev~~~~~-~w~~m~r~--~g~----~W~~~~-~-~~g-~p~~vRvT~~~G~~ 205 (228)
.|...|++|||..+++ +|++..-. .+. .|++.- + .+| --+.+|-||..|.+
T Consensus 285 ~G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 285 DGGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 3446799999998874 89975432 222 355542 1 234 24555778887743
No 30
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=34.29 E-value=1.5e+02 Score=20.23 Aligned_cols=49 Identities=22% Similarity=0.456 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCc-e----EEcC-CCCCCeEEeCC--CCC-C-ccEEEEEEecCCcEEEE
Q 040256 160 VTAVQVKGSSTG-W----LPMS-RNWGQNWQTGT--VLL-G-QGLSFQVTTSDGKTLQF 208 (228)
Q Consensus 160 I~~Vev~~~~~~-w----~~m~-r~~g~~W~~~~--~~~-g-~p~~vRvT~~~G~~v~~ 208 (228)
-++|+|...... | .+|. +....+|++.- .++ + .-+.+||+...|++...
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~~ 80 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPEV 80 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEEE
Confidence 345666544322 3 4677 56778897643 344 3 38999999988755443
No 31
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.18 E-value=1.9e+02 Score=20.02 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=27.3
Q ss_pred EEEEEEcCCCce--EEcCCCCCCeEEeCCCC-CCccEEEEEEecCCcEE
Q 040256 161 TAVQVKGSSTGW--LPMSRNWGQNWQTGTVL-LGQGLSFQVTTSDGKTL 206 (228)
Q Consensus 161 ~~Vev~~~~~~w--~~m~r~~g~~W~~~~~~-~g~p~~vRvT~~~G~~v 206 (228)
++|+|.++=..| .+|.|.....|++.-++ ++ .+..|+.- +|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G-~y~Ykf~v-dg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPG-RYEYKFVV-DGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCC-cEEEEEEE-CCEEe
Confidence 688888764567 46888765678765443 34 45555542 46555
No 32
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=30.13 E-value=40 Score=26.59 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=29.7
Q ss_pred cEEEEEEecCCcEEEEccccCCCCCCCeEEecccCC
Q 040256 193 GLSFQVTTSDGKTLQFDNVAPRNWQFGQTFQGRGNF 228 (228)
Q Consensus 193 p~~vRvT~~~G~~v~~~~vip~~w~~g~~y~~~vqf 228 (228)
-|.+|++++-.++++-..-+|...-+|.+|+-.|.|
T Consensus 34 G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F 69 (161)
T KOG0427|consen 34 GFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEF 69 (161)
T ss_pred cceeecccchheeEEEEecCCceeecCcEEEEEEec
Confidence 588888888889998888888888888888877665
No 33
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.86 E-value=1.6e+02 Score=27.09 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=30.6
Q ss_pred CCCcceEEEEEEcCCC-ceEEcCCCC--C-------Ce---EEeCCCC-CCc--cEEEEEEecCCcE
Q 040256 155 GGAGDVTAVQVKGSST-GWLPMSRNW--G-------QN---WQTGTVL-LGQ--GLSFQVTTSDGKT 205 (228)
Q Consensus 155 ~G~~~I~~Vev~~~~~-~w~~m~r~~--g-------~~---W~~~~~~-~g~--p~~vRvT~~~G~~ 205 (228)
+|...|.+|||..+++ +|+...... + -. |.+.-.+ ++. -+.+|-||..|++
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 4445799999999875 799865432 1 23 4443221 222 4555778877744
No 34
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=29.30 E-value=2e+02 Score=19.97 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=31.1
Q ss_pred eEEEEEEcCCCceE---EcCCCCCCeEEeCCCCCCccEEEEEEecCCcEEEEc
Q 040256 160 VTAVQVKGSSTGWL---PMSRNWGQNWQTGTVLLGQGLSFQVTTSDGKTLQFD 209 (228)
Q Consensus 160 I~~Vev~~~~~~w~---~m~r~~g~~W~~~~~~~g~p~~vRvT~~~G~~v~~~ 209 (228)
-++|+|.++=..|. +|.|..+. |++.-.|+...+.+|+.- +|+++...
T Consensus 12 a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~ 62 (79)
T cd02859 12 GKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSP 62 (79)
T ss_pred CcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCC
Confidence 47899998645676 48887655 776544433366777654 67777654
No 35
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.78 E-value=1.2e+02 Score=23.62 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=52.9
Q ss_pred CCceeechhHHhhccCCCCCeeeEEEE-------EEEeccCCceEEEEc-CCCceEEEEEEeeCCCcceEEEEEEcCC-C
Q 040256 100 QKHFDLSMPMFVKLAPSKAGIIPVRYR-------RILCSKQGGVKFEVK-GNPNWTLVLVYNVGGAGDVTAVQVKGSS-T 170 (228)
Q Consensus 100 ~~~~DLs~~aF~~la~~~~G~v~v~~~-------~V~C~~~g~i~~~v~-s~~~w~av~v~n~~G~~~I~~Vev~~~~-~ 170 (228)
.-||-+...-|..|-+ -....+|+ -+.|..-|--+|..- |+||=.+|.+-=..+ +.+++|+++.-+ +
T Consensus 42 ~~hfivpas~f~ll~g---~efitty~~gth~aqhtfck~cGV~sf~~~rs~p~~~~i~phCld~-gTlr~v~~~~fnGq 117 (134)
T KOG4192|consen 42 NRHFIVPASRFVLLVG---AEFITTYTFGTHQAQHTFCKRCGVQSFYSPRSNPYGKGIAPHCLDE-GTLRSVVWEEFNGQ 117 (134)
T ss_pred ceEEEEeccceEEEeC---cceEEEEEeccchhheeeeccccceeccccccCCCceeecceeecC-CceeEEEEEEecCc
Confidence 4799999999988864 12333443 467777665667777 999988888876654 779999999765 5
Q ss_pred ceEEcCC
Q 040256 171 GWLPMSR 177 (228)
Q Consensus 171 ~w~~m~r 177 (228)
+|..+..
T Consensus 118 dwe~~~e 124 (134)
T KOG4192|consen 118 DWEATME 124 (134)
T ss_pred chhHhhh
Confidence 7876543
No 36
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.98 E-value=1.8e+02 Score=20.87 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=21.8
Q ss_pred EEcCCCCCCeEEeC--CCCCCccEEEEEEecCCcE
Q 040256 173 LPMSRNWGQNWQTG--TVLLGQGLSFQVTTSDGKT 205 (228)
Q Consensus 173 ~~m~r~~g~~W~~~--~~~~g~p~~vRvT~~~G~~ 205 (228)
.+|.+..+.+|.+. +.+.+.-+.+||....++.
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 46777778888753 3345667888887664433
No 37
>PRK12568 glycogen branching enzyme; Provisional
Probab=25.61 E-value=1.6e+02 Score=29.73 Aligned_cols=46 Identities=33% Similarity=0.653 Sum_probs=32.4
Q ss_pred EEEEEEcCCCce----EEcCCCCCCeEEe--CCCCCCccEEEEEEecCCcEE
Q 040256 161 TAVQVKGSSTGW----LPMSRNWGQNWQT--GTVLLGQGLSFQVTTSDGKTL 206 (228)
Q Consensus 161 ~~Vev~~~~~~w----~~m~r~~g~~W~~--~~~~~g~p~~vRvT~~~G~~v 206 (228)
++|+|.+.-..| .+|.+..+.+|++ ++...|..+.+||+..+|+.+
T Consensus 150 ~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~~YKYeI~~~~G~~~ 201 (730)
T PRK12568 150 QRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGARYKYAITAADGRVL 201 (730)
T ss_pred CEEEEEEecCCCCccceecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEe
Confidence 466776643445 5788777889986 444567789999988777664
No 38
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=23.94 E-value=2.7e+02 Score=22.17 Aligned_cols=45 Identities=29% Similarity=0.453 Sum_probs=25.4
Q ss_pred CCeeeEEEEEEEeccCCceEEEEc----CCCceEEEEEEeeCCCcceEEEEEE
Q 040256 118 AGIIPVRYRRILCSKQGGVKFEVK----GNPNWTLVLVYNVGGAGDVTAVQVK 166 (228)
Q Consensus 118 ~G~v~v~~~~V~C~~~g~i~~~v~----s~~~w~av~v~n~~G~~~I~~Vev~ 166 (228)
-|-++|+-|+-+=. +...+.+= -+|+|+.+++.+.+ .++.-|...
T Consensus 57 gGffPVq~Rftp~~--~~~~l~vCSpG~~sp~W~~vl~~~~G--~~~~vv~t~ 105 (143)
T PF06290_consen 57 GGFFPVQCRFTPSH--ERFHLAVCSPGEVSPYWMLVLVNRGG--QPFAVVRTQ 105 (143)
T ss_dssp -S-SSSEEEEEETT---SEEEEEE-SSSS-SSEEEEEEECCC---SEEEEEEE
T ss_pred ccEeeEEEEecCCC--CcEEEEEcCCCCcCcceEEEEECCCC--cEEEEEEec
Confidence 36677777776544 44555443 28999977765544 667666665
No 39
>COG3895 Predicted periplasmic protein [General function prediction only]
Probab=22.56 E-value=57 Score=24.93 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=18.7
Q ss_pred cCCcEEEEccccCCCCCCCeEEecc
Q 040256 201 SDGKTLQFDNVAPRNWQFGQTFQGR 225 (228)
Q Consensus 201 ~~G~~v~~~~vip~~w~~g~~y~~~ 225 (228)
.+|+++++.|||.+. |+-|...
T Consensus 60 ~Dg~tlv~~nviSaS---GAkYa~G 81 (112)
T COG3895 60 LDGKTLVLSNVISAS---GAKYADG 81 (112)
T ss_pred ecCCEEEEeeeeecc---CccccCc
Confidence 578899999999988 8888765
No 40
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=22.13 E-value=1e+02 Score=22.24 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEeccCCceEE-EEcCCCceEEEEEEe
Q 040256 128 ILCSKQGGVKF-EVKGNPNWTLVLVYN 153 (228)
Q Consensus 128 V~C~~~g~i~~-~v~s~~~w~av~v~n 153 (228)
-+|..++.|.+ ++++.++|-+..+.-
T Consensus 4 ~pc~~p~dLVwAK~kGyp~WPAkV~~~ 30 (83)
T cd05841 4 EPCRPPHELVWAKLKGFPYWPAKVMRV 30 (83)
T ss_pred cccCCCCCEEEEeCCCCCCCCEEEeec
Confidence 37989998776 788999998766553
No 41
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.69 E-value=1.3e+02 Score=24.38 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=20.7
Q ss_pred cEEEEEEecCCcE-EEEccccCCCCCCCe
Q 040256 193 GLSFQVTTSDGKT-LQFDNVAPRNWQFGQ 220 (228)
Q Consensus 193 p~~vRvT~~~G~~-v~~~~vip~~w~~g~ 220 (228)
.++|+|||...+. |.+..++|+-|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 5788888765543 445689999998876
No 42
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=20.66 E-value=3.4e+02 Score=21.57 Aligned_cols=45 Identities=36% Similarity=0.622 Sum_probs=25.5
Q ss_pred CCeeeEEEEEEEeccCCceEEEEc--C--CCceEEEEEEeeCCCcceEEEEEE
Q 040256 118 AGIIPVRYRRILCSKQGGVKFEVK--G--NPNWTLVLVYNVGGAGDVTAVQVK 166 (228)
Q Consensus 118 ~G~v~v~~~~V~C~~~g~i~~~v~--s--~~~w~av~v~n~~G~~~I~~Vev~ 166 (228)
-|-++|+-|+-| .-++..+.+= + +|+|+.+++. .+| .++.-|.+.
T Consensus 57 gGffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~~-~gG-~~~a~v~~~ 105 (144)
T PRK13701 57 GGFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLVN-AGG-EPFAVVQVQ 105 (144)
T ss_pred cCeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEEc-CCC-cEEEEEEec
Confidence 356677766665 2345555543 2 8999876654 442 455444444
No 43
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=20.20 E-value=3.4e+02 Score=25.22 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=16.2
Q ss_pred cceEEEEEEcCCC-ceEEcCC
Q 040256 158 GDVTAVQVKGSST-GWLPMSR 177 (228)
Q Consensus 158 ~~I~~Vev~~~~~-~w~~m~r 177 (228)
..|++|||..+++ +|+....
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCC
Confidence 4799999998875 7998654
Done!