BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040258
(590 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 132/273 (48%), Gaps = 15/273 (5%)
Query: 35 AIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIV 94
+ KAT H PK++H+ L T+ + ++ +L +R + + +W+V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 95 IHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECF 154
H + G+ F + L + R + +SNF D S +D S ++R Y+ +L E+ +
Sbjct: 89 THHLMVYGNERFIQYL---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 155 RILRYDIESERLTKSSPGATKVHSRTRLLNCDXXXXXXXXXXXXXFRLIGCSPEGAAYHN 214
R + +D TK GA V R +N + L+ + N
Sbjct: 146 RQVAFD-----FTKVKRGADGV---MRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTN 197
Query: 215 YLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADF 274
++ A L+ K++ +++ A N+GIINL++ +FDM ++ + L+IYK+ + +++F
Sbjct: 198 GVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEF 257
Query: 275 YEYCKGLELARNFQFPTLRQPPPSFLATMEEYI 307
+ + + + R P L Q P S L +E+++
Sbjct: 258 LKVAEQVGIDRG-DIPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 132/273 (48%), Gaps = 15/273 (5%)
Query: 35 AIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIV 94
+ KAT H PK++H+ L T+ + ++ +L +R + + +W+V K+LI
Sbjct: 25 TVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLIT 81
Query: 95 IHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECF 154
H + G+ F + L + R + +SNF D S +D S ++R Y+ +L E+ +
Sbjct: 82 THHLMVYGNERFIQYL---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 138
Query: 155 RILRYDIESERLTKSSPGATKVHSRTRLLNCDXXXXXXXXXXXXXFRLIGCSPEGAAYHN 214
R + +D TK GA V R +N + L+ + N
Sbjct: 139 RQVAFD-----FTKVKRGADGV---MRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTN 190
Query: 215 YLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADF 274
++ A L+ K++ +++ A N+GIINL++ +FDM ++ + L+IYK+ + +++F
Sbjct: 191 GVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEF 250
Query: 275 YEYCKGLELARNFQFPTLRQPPPSFLATMEEYI 307
+ + + + R P L Q P S L +E+++
Sbjct: 251 LKVAEQVGIDRG-DIPDLSQAPSSLLDALEQHL 282
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 14/251 (5%)
Query: 35 AIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIV 94
+ KAT H PK++H+ L T+ + ++ +L +R + + +W+V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 95 IHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECF 154
H + G+ F + L + R + +SNF D S +D S ++R Y+ +L E+ +
Sbjct: 89 THHLMVYGNERFIQYL---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 155 RILRYDIESERLTKSSPGATKVHSRTRLLNCDXXXXXXXXXXXXXFRLIGCSPEGAAYHN 214
R + +D TK GA V R +N + L+ + N
Sbjct: 146 RQVAFD-----FTKVKRGADGV---MRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTN 197
Query: 215 YLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADF 274
++ A L+ K++ +++ A N+GIINL++ +FDM ++ + L+IYK+ + +++F
Sbjct: 198 GVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEF 257
Query: 275 YEYCKGLELAR 285
+ + + + R
Sbjct: 258 LKVAEQVGIDR 268
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 120/251 (47%), Gaps = 14/251 (5%)
Query: 35 AIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIV 94
+ KAT H PK++H+ L T+ ++ +L +R + + +W+V K+LI
Sbjct: 32 TVCKATTHEIMGPKKKHLDYLIQCTN--EMNVNIPQLADSLFERTTNS-SWVVVFKSLIT 88
Query: 95 IHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECF 154
H + G+ F + L + R + +SNF D S +D S ++R Y+ +L E+ +
Sbjct: 89 THHLMVYGNERFIQYL---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSY 145
Query: 155 RILRYDIESERLTKSSPGATKVHSRTRLLNCDXXXXXXXXXXXXXFRLIGCSPEGAAYHN 214
R + +D TK GA V R +N + L+ + N
Sbjct: 146 RQVAFD-----FTKVKRGADGV---MRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTN 197
Query: 215 YLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADF 274
++ A L+ K++ +++ A N+GIINL++ +FDM ++ + L+IYK+ + +++F
Sbjct: 198 GVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEF 257
Query: 275 YEYCKGLELAR 285
+ + + + R
Sbjct: 258 LKVAEQVGIDR 268
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 25/284 (8%)
Query: 35 AIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIV 94
++ KAT PK++H+ L + P + + + L +R S+ NW+V K+LI
Sbjct: 27 SVCKATTEECIGPKKKHLDYLVHCAN--EPNVSIPHLANLLIER-SQNANWVVVYKSLIT 83
Query: 95 IHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSP-----------LAWDCSAWVRTY 143
H + G+ F + L + +S+F D + + +D S ++R Y
Sbjct: 84 THHLMAYGNERFMQYL---ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRY 140
Query: 144 ALFLEERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDXXXXXXXXXXXXXFRLI 203
A +L E+ +R + +D K G K R +N + L+
Sbjct: 141 AKYLNEKSLSYRAMAFD-----FCKVKRG--KEEGSLRSMNAEKLLKTLPVLQAQLDALL 193
Query: 204 GCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKR 263
+ N ++ + L+ ++ +++ NDGIINL++ +FDM++ A AL++YK+
Sbjct: 194 EFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKK 253
Query: 264 AGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYI 307
+ + + +F + + + + + P L + P S L +E+++
Sbjct: 254 FLVRMDRVGEFLKVAENVGIDKG-DIPDLTKAPSSLLDALEQHL 296
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 49 ERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAI------------KTLIVIH 96
E+ V + + + R AY I AL+K + K + I K VI
Sbjct: 76 EKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERDVIV 135
Query: 97 RTLREGDPTFREELLNYSH 115
R L+E D + RE + NY H
Sbjct: 136 RELQENDTSMREVVFNYLH 154
>pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 256 KALNIYKRAGQQAESLADFYEYCKGLELARNFQFPT 291
+A+++ RA AE + D E G+EL R FPT
Sbjct: 246 EAVHVETRAPIDAEQVMDMLEQTDGIELFRGADFPT 281
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 256 KALNIYKRAGQQAESLADFYEYCKGLELARNFQFPT 291
+A+++ RA AE + D E G+EL R FPT
Sbjct: 246 EAVHVETRAPIDAEQVMDMLEQTDGIELFRGADFPT 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,210,931
Number of Sequences: 62578
Number of extensions: 504502
Number of successful extensions: 1159
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 8
length of query: 590
length of database: 14,973,337
effective HSP length: 104
effective length of query: 486
effective length of database: 8,465,225
effective search space: 4114099350
effective search space used: 4114099350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)