Query 040258
Match_columns 590
No_of_seqs 209 out of 562
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 2E-91 4.3E-96 759.1 30.5 461 9-502 1-473 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 3.9E-65 8.4E-70 521.4 22.9 272 30-309 2-279 (280)
3 KOG0980 Actin-binding protein 100.0 1E-40 2.2E-45 370.9 12.8 257 30-308 5-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 1.3E-31 2.9E-36 242.4 12.2 117 32-154 1-117 (117)
5 smart00273 ENTH Epsin N-termin 100.0 2.3E-28 5E-33 223.8 11.3 125 30-159 1-125 (127)
6 PF01417 ENTH: ENTH domain; I 99.4 3.3E-12 7.1E-17 117.0 10.0 118 29-152 1-120 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 1.1E-10 2.4E-15 105.0 9.9 113 32-151 1-113 (115)
8 cd03571 ENTH_epsin ENTH domain 99.1 4.2E-10 9.1E-15 103.4 9.9 115 31-151 1-116 (123)
9 KOG2056 Equilibrative nucleosi 98.7 4.4E-08 9.6E-13 103.0 9.1 118 28-151 18-136 (336)
10 cd03572 ENTH_epsin_related ENT 98.0 3.5E-05 7.5E-10 71.0 9.2 112 35-151 5-117 (122)
11 KOG2057 Predicted equilibrativ 97.6 0.00021 4.6E-09 74.8 8.0 116 28-147 20-137 (499)
12 cd03568 VHS_STAM VHS domain fa 95.6 0.059 1.3E-06 51.1 8.6 76 32-110 1-76 (144)
13 cd03569 VHS_Hrs_Vps27p VHS dom 95.5 0.084 1.8E-06 49.9 9.1 78 30-110 3-80 (142)
14 PF00790 VHS: VHS domain; Int 95.4 0.077 1.7E-06 49.7 8.6 79 29-110 3-81 (140)
15 cd03565 VHS_Tom1 VHS domain fa 95.3 0.1 2.2E-06 49.3 9.1 77 32-110 2-78 (141)
16 cd03567 VHS_GGA VHS domain fam 95.2 0.11 2.4E-06 49.0 8.9 77 32-111 2-78 (139)
17 smart00288 VHS Domain present 95.1 0.12 2.6E-06 48.2 8.6 76 32-110 1-76 (133)
18 cd03561 VHS VHS domain family; 94.8 0.17 3.6E-06 47.1 8.8 75 33-110 2-76 (133)
19 KOG4369 RTK signaling protein 86.4 1.8 4E-05 52.6 7.5 19 512-530 1858-1876(2131)
20 KOG2199 Signal transducing ada 86.4 3.1 6.7E-05 45.6 8.6 79 29-110 6-84 (462)
21 KOG0414 Chromosome condensatio 85.4 13 0.00029 45.8 13.9 183 71-283 360-573 (1251)
22 KOG1087 Cytosolic sorting prot 64.2 16 0.00035 41.2 6.7 73 32-107 2-74 (470)
23 KOG1883 Cofactor required for 47.7 20 0.00043 44.2 4.1 16 489-504 1408-1423(1517)
24 KOG3598 Thyroid hormone recept 47.1 28 0.00061 44.0 5.2 22 259-280 1659-1680(2220)
25 KOG1915 Cell cycle control pro 37.5 62 0.0013 36.9 5.7 66 185-279 150-215 (677)
26 KOG3598 Thyroid hormone recept 31.3 36 0.00079 43.1 2.9 19 40-58 1187-1205(2220)
27 PF02042 RWP-RK: RWP-RK domain 30.8 47 0.001 26.5 2.6 35 242-285 9-43 (52)
28 KOG2675 Adenylate cyclase-asso 30.2 8.6E+02 0.019 27.6 13.0 33 251-283 101-133 (480)
29 KOG0946 ER-Golgi vesicle-tethe 29.5 3E+02 0.0066 33.4 9.7 60 197-274 144-206 (970)
30 KOG4592 Uncharacterized conser 28.8 1.1E+02 0.0024 35.7 6.0 27 421-455 80-106 (728)
31 KOG1086 Cytosolic sorting prot 27.8 1.5E+02 0.0033 33.4 6.6 81 30-113 7-87 (594)
32 PF02184 HAT: HAT (Half-A-TPR) 26.8 50 0.0011 23.8 1.9 26 254-279 3-28 (32)
33 KOG4369 RTK signaling protein 26.4 58 0.0013 40.7 3.4 11 525-535 1882-1892(2131)
34 PF14131 DUF4298: Domain of un 24.9 2.8E+02 0.0061 24.2 6.7 46 226-283 3-51 (90)
35 PF10428 SOG2: RAM signalling 22.2 1.2E+02 0.0025 34.2 4.7 32 236-267 69-113 (445)
36 KOG1924 RhoA GTPase effector D 21.5 1.6E+03 0.034 27.7 14.3 11 256-266 475-485 (1102)
37 KOG4368 Predicted RNA binding 21.4 2.9E+02 0.0063 32.3 7.4 9 504-512 254-262 (757)
38 KOG3520 Predicted guanine nucl 21.4 3E+02 0.0065 34.7 8.1 47 216-268 447-493 (1167)
39 PF08832 SRC-1: Steroid recept 20.9 52 0.0011 28.4 1.2 12 94-105 58-70 (78)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-91 Score=759.09 Aligned_cols=461 Identities=42% Similarity=0.652 Sum_probs=357.9
Q ss_pred HHHhhhccccceeeeeecCCCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHH
Q 040258 9 KAYGALKDSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVA 88 (590)
Q Consensus 9 ka~GalKD~tsig~Akv~~~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVA 88 (590)
+|+|++||++|||+|+|++.++++++||+|||+|+++|||+|||+.|+.+|+.++ +++.+|+++|++||++||||+||
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence 5789999999999999998889999999999999999999999999999999875 89999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 040258 89 IKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTK 168 (590)
Q Consensus 89 lKtLIllHrLLreG~psf~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~l~~d~~~~~l~~ 168 (590)
+||||||||||++|+++|.+++..+ .++|+|++|+|++++.+|||++|||+|++||++|++||+.+++|++..+..+
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~~~---~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~ 155 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELLSR---NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGK 155 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhc---ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCcc
Confidence 9999999999999999999888554 4799999999999999999999999999999999999999999998543211
Q ss_pred CCCCCCccccccccCC-HHHHHHhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040258 169 SSPGATKVHSRTRLLN-CDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFF 247 (590)
Q Consensus 169 ~~~~~~~~~~~~r~l~-~e~LL~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fF 247 (590)
.....+++. ++.+|+.+++||.+|+++|+|+|.+.+++|.||++||.+||+|||+||++||+||++|||+||
T Consensus 156 -------~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekff 228 (491)
T KOG0251|consen 156 -------EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFF 228 (491)
T ss_pred -------cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123345566 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCcchHHHHHHHHHhCCCCCccccc-ccccccC
Q 040258 248 DMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQSGTVQKR-LEYHETV 326 (590)
Q Consensus 248 eM~~~Da~kaLeIYkRf~kQ~e~L~~Fy~~Ck~l~~~r~i~iP~L~~~P~sfL~~LEEylrda~~~~~~~~~-~~~~~~~ 326 (590)
||+++||+++|+|||||.+|+|+|.+||++||.+|+.|.++||+|+++|.++|++|||||++.+..+...+. ...+...
T Consensus 229 em~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~ 308 (491)
T KOG0251|consen 229 EMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFS 308 (491)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999997643322111 1111100
Q ss_pred CCCCCCCC--C-CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCchhhhhhhhccc
Q 040258 327 EEDDKPEE--P-VESEKPEENPEESQPLV----EAEEGPQPREEEVEPAPLIPAEATGDLLGLNEEVNPKAAELEESNAL 399 (590)
Q Consensus 327 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~dll~l~~~~~~~~~~~~~~~~l 399 (590)
.+.+..+. . ....+..+ . ++..+ ..+..|.+.++.++..+.. ...++|++.+.+ ..+..++.+..|+|
T Consensus 309 ~~~~~~e~~~~~~~~~e~~~-~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l 383 (491)
T KOG0251|consen 309 TDFESSESSSRLEEPEEQKE-V--IEELQEPLEQEEDQPSPNSENPEANDQA-GIATDDLLLQPD-NLPMFSASTAPNAL 383 (491)
T ss_pred cchhccccccccccchhhhh-c--cccccccccccccCCCCCCCCccccccc-cccCcchhhccc-CCCccccccCcchh
Confidence 11000110 0 00001110 0 11111 1111111110011111110 012234444443 46788999999999
Q ss_pred hhccccCCCCCCCCcccccccCCCcceeeeccCCCCCccccccccccCCcchhhhhccchHHHHHHHHhhhcCCCCCCCC
Q 040258 400 ALAIVQPGNDPLSSNRALKEISGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLDSLYEDDSARRHIQLQNAGYGHAGM 479 (590)
Q Consensus 400 ala~~~~~~~~~~~~~~~~~~~~~~WElaLV~~~s~~~~~~~~~~l~Gg~d~l~Ld~~y~~~~~~~~~~~~~~~~g~~~s 479 (590)
|||+ . .+ .++++|||+++|+..++.-...+..++|||| +||||| ++.+|+.++.++.++|++.+
T Consensus 384 ~~~~-~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~ 447 (491)
T KOG0251|consen 384 ALAL-P-FP----------NHTGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPF 447 (491)
T ss_pred hcCC-C-CC----------CCCCCccccccCCcchhhhhhcccccccccc---eecccc-CCchhhhccccccccCCCcc
Confidence 9998 2 21 3467889999998776554322212899999 999999 88888876554556676666
Q ss_pred CC-CCCCCC--CCCCcccccCCCCCC
Q 040258 480 AV-PNPFEH--QQHDPFAVSNSIAPP 502 (590)
Q Consensus 480 ~a-~~p~~~--~~~dpFaaS~~v~pp 502 (590)
++ |+..+. .+.+||+.|..+++|
T Consensus 448 ~~~p~~~~~~~~~~~~~~~~~~~a~~ 473 (491)
T KOG0251|consen 448 GAQPMPAMAALPQPYPVGQPPFPAQL 473 (491)
T ss_pred ccCCchhhhcccccCCCCCCCCcCcc
Confidence 54 322222 355899999988887
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=3.9e-65 Score=521.37 Aligned_cols=272 Identities=50% Similarity=0.857 Sum_probs=216.8
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
+++++||+|||+|+++|||+||||.||.+|+. + .+++.|+|+|++|+.+++||+|||||||||||||||||++|.++
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~--~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~ 78 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-P--ESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQE 78 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-T--S-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-C--ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 58999999999999999999999999999998 2 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhcCcccccccccC--CCCCCCCcccHHHHHHHHHHHHHHHHhhhhccc---ccccccccCCCCCCcccccc-ccC
Q 040258 110 LLNYSHRGHILQISNFKD--DSSPLAWDCSAWVRTYALFLEERLECFRILRYD---IESERLTKSSPGATKVHSRT-RLL 183 (590)
Q Consensus 110 ll~y~rr~~iL~Ls~F~D--~ss~~s~d~safVR~Ya~YLdeRL~~~r~l~~d---~~~~~l~~~~~~~~~~~~~~-r~l 183 (590)
+.++ +.++++++++|+ ++++.+|+|+.|||+|++||++|+.||+.++.+ ++..... .. ...+.... ..+
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~--~~-~~~~~~~~~~~~ 153 (280)
T PF07651_consen 79 LLRY--NRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEG--SL-VSRDDPNSRKSL 153 (280)
T ss_dssp HHHT--T-----TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S--------TTSHCC-C-
T ss_pred HHHc--ccchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHcccccccccccccc--cc-ccccCccccccc
Confidence 8766 345667777666 677889999999999999999999999999887 4422210 00 00011122 478
Q ss_pred CHHHHHHhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 040258 184 NCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKR 263 (590)
Q Consensus 184 ~~e~LL~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkR 263 (590)
++++||+.++.||++|+++++|+|.+.+.+|+|+++||++||+||++||+.+|+||++|+|+||+|++.||.++++||+|
T Consensus 154 ~~~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~r 233 (280)
T PF07651_consen 154 DIDDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKR 233 (280)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCcCCCCCcchHHHHHHHHHh
Q 040258 264 AGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIRE 309 (590)
Q Consensus 264 f~kQ~e~L~~Fy~~Ck~l~~~r~i~iP~L~~~P~sfL~~LEEylrd 309 (590)
|.+|+++|++||++||++++++.++||+|+++|++|+.+|||||+|
T Consensus 234 f~~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~ 279 (280)
T PF07651_consen 234 FAKQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRD 279 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999988999999999999999999997
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=1e-40 Score=370.92 Aligned_cols=257 Identities=25% Similarity=0.323 Sum_probs=221.5
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
.++-+||.|||+.+|+|||+||||.||.+||.+++ +.+||...+|+...++-+.+||+|||||||||||||++..+
T Consensus 5 ~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks----a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~e 80 (980)
T KOG0980|consen 5 RAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS----SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEE 80 (980)
T ss_pred HHHHHHHHHHhccccCCCchhhhhheeeeeccccc----chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHH
Confidence 57889999999999999999999999999999985 45789999999999999999999999999999999999999
Q ss_pred HHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhcccc-----cccccccCCCCCCccccccccCC
Q 040258 110 LLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDI-----ESERLTKSSPGATKVHSRTRLLN 184 (590)
Q Consensus 110 ll~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~l~~d~-----~~~~l~~~~~~~~~~~~~~r~l~ 184 (590)
..+| ++||..|+++|++.+ .|||.+||.|++||..|+.||.+++... ....+..... +.+...+++
T Consensus 81 s~r~--r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~----D~n~~felt 151 (980)
T KOG0980|consen 81 SQRY--KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVD----DLNNGFELT 151 (980)
T ss_pred HHHH--HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhc----cHHHHHHHH
Confidence 8777 789999999998764 6899999999999999999999875422 2111111111 234455666
Q ss_pred H--HHHHHhHHHHHHHHHHHHcCCCC-CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---hHHHHHHH
Q 040258 185 C--DELLEQLPALQQLLFRLIGCSPE-GAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMS---RHDAVKAL 258 (590)
Q Consensus 185 ~--e~LL~~L~~LQ~LLd~ll~crP~-g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~---~~Da~kaL 258 (590)
+ .++++.+..||+.||+.+...+. .....++|++++|++||.||+.||++++. ++|.|+ .+|++.+|
T Consensus 152 vdmmd~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vk-------mlfkLHs~vp~dtLegh 224 (980)
T KOG0980|consen 152 VDMMDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVK-------MLFKLHSQVPPDTLEGH 224 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHH-------HHHHHHcCCCHHHhhhH
Confidence 6 47889999999999999996554 34568999999999999999999999999 556665 68999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc-ccccCCcCCCCCcchHH--HHHHHHH
Q 040258 259 NIYKRAGQQAESLADFYEYCKGLELA-RNFQFPTLRQPPPSFLA--TMEEYIR 308 (590)
Q Consensus 259 eIYkRf~kQ~e~L~~Fy~~Ck~l~~~-r~i~iP~L~~~P~sfL~--~LEEylr 308 (590)
+ .||..|+.+|++||..|+++.|+ +.|+||.||..||+|+. .+++|+.
T Consensus 225 R--dRf~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 225 R--DRFHTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred H--HHHHHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 8 99999999999999999999998 56999999999999998 5888876
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.97 E-value=1.3e-31 Score=242.37 Aligned_cols=117 Identities=48% Similarity=0.786 Sum_probs=107.9
Q ss_pred HHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHH
Q 040258 32 LDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELL 111 (590)
Q Consensus 32 LevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ell 111 (590)
+++||+|||+|+++|||+|||++||.+|+.++ .++.+|+++|.+|+.+ +||+|+||+|||||+|||+|+++|.++++
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~--~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSP--ASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 57999999999999999999999999999853 6889999999999987 99999999999999999999999998875
Q ss_pred hhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHh
Q 040258 112 NYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECF 154 (590)
Q Consensus 112 ~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~ 154 (590)
.+ ..+|++++|.|.+++.+|||+.|||.|++||++|++||
T Consensus 78 ~~---~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 78 SR---RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred Hc---cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 43 56889999999887678999999999999999999986
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=2.3e-28 Score=223.82 Aligned_cols=125 Identities=39% Similarity=0.554 Sum_probs=112.8
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
++++++|+|||||+++|||+||+++|+.+|+.++ .++.+|+..|.+||.++++|+|++|||+|||+||++|++.|..+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~--~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~ 78 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEK--SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILE 78 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCH--hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999999999999999999999874 67899999999999988899999999999999999999998777
Q ss_pred HHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhcc
Q 040258 110 LLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRY 159 (590)
Q Consensus 110 ll~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~l~~ 159 (590)
+... +..+++|++|++. ++.+||++.|||.|++||++||.+++.++.
T Consensus 79 ~~~~--~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~ 125 (127)
T smart00273 79 ALRN--RNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKE 125 (127)
T ss_pred HHHh--hHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhc
Confidence 6433 4569999999986 467899999999999999999999998764
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.36 E-value=3.3e-12 Score=116.95 Aligned_cols=118 Identities=25% Similarity=0.324 Sum_probs=93.1
Q ss_pred CchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhh--ccCCChhHHHHHHHHHHHHHhcCCcch
Q 040258 29 FKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRL--SKTRNWIVAIKTLIVIHRTLREGDPTF 106 (590)
Q Consensus 29 ~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL--~kTrnWiVAlKtLIllHrLLreG~psf 106 (590)
++++++-|.+||+.++.+|..+++.+|...|+.+ .+...++..|.+|| .+.++|.+++|+|.|||.||+.|++.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 4688999999999999999999999999999986 45678899999999 456899999999999999999999999
Q ss_pred HHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHH
Q 040258 107 REELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLE 152 (590)
Q Consensus 107 ~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~ 152 (590)
..++..+ ...|-.|.+|+- .++.+.+.+.-||..|+-|.+-|.
T Consensus 78 ~~~~~~~--~~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 78 VDELRDH--IDIIRELQDFQY-VDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHHHT--HHHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHhC
Confidence 8887443 234777888875 223567888889999998877653
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.18 E-value=1.1e-10 Score=105.01 Aligned_cols=113 Identities=20% Similarity=0.267 Sum_probs=91.2
Q ss_pred HHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHH
Q 040258 32 LDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELL 111 (590)
Q Consensus 32 LevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ell 111 (590)
+++.|.|||+++...|+.+++.+|...+... + .....++.+|.+||.. ++|.|++|+|.|||.|+..|++.|..++.
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~-~-~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvkN~g~~f~~~i~ 77 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINET-N-VGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVKNCGERFHQEVA 77 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCC-C-ccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3678999999999999999999999999765 3 5678899999999975 69999999999999999999999988763
Q ss_pred hhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 040258 112 NYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERL 151 (590)
Q Consensus 112 ~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 151 (590)
. +..+.++.+| +.....+.+.+..||.++++|.+..
T Consensus 78 ~---~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 78 S---NDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred H---hHHHHHHHHh-hccccccCCCChHHHHHHHHHHHHH
Confidence 3 3334555555 2222334567899999999997653
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.10 E-value=4.2e-10 Score=103.45 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=91.7
Q ss_pred hHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 31 DLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSK-TRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 31 dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~k-TrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
+.++-|..|||.++.+|..+++.+|..+|+.. .++..++..|.+||.. .++|++++|+|+||+.||+.|++.|..+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~---~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~ 77 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNY---VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDD 77 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35788999999999999999999999999975 4678899999999975 4899999999999999999999999888
Q ss_pred HHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 040258 110 LLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERL 151 (590)
Q Consensus 110 ll~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 151 (590)
+.... ..|-.|.+|.-- ...+.|.+.-||.=|+-|.+-|
T Consensus 78 ~r~~~--~~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 78 ARENL--YIIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HHHhH--HHHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 74432 224555666521 1224578899998877776544
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.70 E-value=4.4e-08 Score=103.05 Aligned_cols=118 Identities=20% Similarity=0.224 Sum_probs=93.3
Q ss_pred CCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccC-CChhHHHHHHHHHHHHHhcCCcch
Q 040258 28 EFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKT-RNWIVAIKTLIVIHRTLREGDPTF 106 (590)
Q Consensus 28 ~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kT-rnWiVAlKtLIllHrLLreG~psf 106 (590)
+|++.++.|.-||+.+...|.-+++-+|..+|+.. ..+..++..|.||+.++ ++|++++|+|.||-.||..|+..|
T Consensus 18 ~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~---~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv 94 (336)
T KOG2056|consen 18 NYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNF---VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERV 94 (336)
T ss_pred cchHHHHHHHhccccccCCCchHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHH
Confidence 37899999999999999999999999999999986 57899999999999854 899999999999999999999988
Q ss_pred HHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 040258 107 REELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERL 151 (590)
Q Consensus 107 ~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 151 (590)
.+++.... -.|--|..|.-- ...+.|.+.-||.-++-|...|
T Consensus 95 ~~~~ren~--~~I~tL~~Fq~i-D~~G~dqG~nVRkkak~l~~LL 136 (336)
T KOG2056|consen 95 VDETRENI--YTIETLKDFQYI-DEDGKDQGLNVRKKAKELLSLL 136 (336)
T ss_pred HHHHHhhh--HHHHHHhhceee-CCCCccchHHHHHHHHHHHHHh
Confidence 77763211 113334445311 1224677888998887774443
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=97.99 E-value=3.5e-05 Score=71.04 Aligned_cols=112 Identities=23% Similarity=0.242 Sum_probs=88.5
Q ss_pred HHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHHhhh
Q 040258 35 AIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYS 114 (590)
Q Consensus 35 AIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ell~y~ 114 (590)
.|.|||+.++.||--=-.++|...|+.+- ..+..++..|.+||.+ ++..|-+|+|-+|-.|++.|++.|+.++...+
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~--~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~ 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSV--GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH
Confidence 58899999998776666779999998852 5678889999999975 67888899999999999999999987765442
Q ss_pred hcCcccccccccCCCCC-CCCcccHHHHHHHHHHHHHH
Q 040258 115 HRGHILQISNFKDDSSP-LAWDCSAWVRTYALFLEERL 151 (590)
Q Consensus 115 rr~~iL~Ls~F~D~ss~-~s~d~safVR~Ya~YLdeRL 151 (590)
..|..+.+|+..-++ .+++.+..||.=|+=|-.-+
T Consensus 82 --~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 82 --AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred --HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 246777888764443 46788999998877665543
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00021 Score=74.77 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=88.5
Q ss_pred CCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhcc--CCChhHHHHHHHHHHHHHhcCCcc
Q 040258 28 EFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSK--TRNWIVAIKTLIVIHRTLREGDPT 105 (590)
Q Consensus 28 ~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~k--TrnWiVAlKtLIllHrLLreG~ps 105 (590)
+|++++.-|+.|||-|...|.--.+-+|-.+|.... -.++..++..|..|+-+ ..+|.-++|+||||..||+.|...
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry-~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER 98 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRY-MEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSER 98 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 589999999999999999999999999999986521 14678889999999853 369999999999999999999999
Q ss_pred hHHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHH
Q 040258 106 FREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFL 147 (590)
Q Consensus 106 f~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YL 147 (590)
|.++...+.-.-+-|.--+|.|+. +.|.+-.||.-.+-|
T Consensus 99 ~VqeAREh~YdLR~LEnYhfiDEh---GKDQGINIR~kVKei 137 (499)
T KOG2057|consen 99 FVQEAREHAYDLRRLENYHFIDEH---GKDQGINIRHKVKEI 137 (499)
T ss_pred HHHHHHHHHHHHHhhhhccchhhh---CccccccHHHHHHHH
Confidence 987753221101112222466754 457788898877766
No 12
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.62 E-value=0.059 Score=51.10 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=65.9
Q ss_pred HHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 040258 32 LDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREEL 110 (590)
Q Consensus 32 LevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~el 110 (590)
+|..|-|||+....-|+--.+-+|-...... + .....++.+|.+||. .+|..|++.+|.|+--|+..+...|..|+
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~-~-~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSD-E-NGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4678999999999889999988888887654 2 566899999999996 58999999999999999999998888776
No 13
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.48 E-value=0.084 Score=49.91 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=67.1
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
+.++..|-|||+....-|+--.+-+|........ .....++++|-+||. .+|..|++-+|.|+.-|+..+...|..+
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~--~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD--VQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5689999999999888899999888888876542 456889999999995 5899999999999999999988778766
Q ss_pred H
Q 040258 110 L 110 (590)
Q Consensus 110 l 110 (590)
+
T Consensus 80 v 80 (142)
T cd03569 80 V 80 (142)
T ss_pred H
Confidence 5
No 14
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.42 E-value=0.077 Score=49.68 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=65.6
Q ss_pred CchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHH
Q 040258 29 FKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFRE 108 (590)
Q Consensus 29 ~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ 108 (590)
...++..|.|||++...-|+-..+-.|....... + .....++.+|.+||.. +|..|.+-+|.|+.-|+..+.+.|..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~-~-~~~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSS-P-DGAKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTS-T-THHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3678999999999998888888888888887765 2 4568899999999964 89999999999999999999988877
Q ss_pred HH
Q 040258 109 EL 110 (590)
Q Consensus 109 el 110 (590)
++
T Consensus 80 ev 81 (140)
T PF00790_consen 80 EV 81 (140)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 15
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.33 E-value=0.1 Score=49.26 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=66.3
Q ss_pred HHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 040258 32 LDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREEL 110 (590)
Q Consensus 32 LevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~el 110 (590)
++..|-|||+....-++--.+-+|-...... . .....++++|.+||...+|-.|++-+|.|+--|+..+...|..|+
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~-~-~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINET-E-DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCC-C-CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4678999999998888998888888887653 2 566899999999997567999999999999999999998888776
No 16
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.20 E-value=0.11 Score=49.01 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHH
Q 040258 32 LDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELL 111 (590)
Q Consensus 32 LevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ell 111 (590)
++..|.|||+....-|+--++-+|....... + .....++.+|.+||. .+|..|++-+|.|+.-|+..+...|..++.
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~-~-~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE-P-EGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 7889999999999999999999998888654 4 356789999999996 689999999999999999988888877763
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.08 E-value=0.12 Score=48.18 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=65.5
Q ss_pred HHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 040258 32 LDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREEL 110 (590)
Q Consensus 32 LevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~el 110 (590)
++..|.|||+....-|+--.+-+|....... + .....++++|.+||. .+|..|++.+|.|+--|+..+...|..++
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~-~-~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINST-P-DGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3667999999998889999998888887665 3 456889999999996 68999999999999999999888887776
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.78 E-value=0.17 Score=47.07 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=64.2
Q ss_pred HHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 040258 33 DIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREEL 110 (590)
Q Consensus 33 evAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~el 110 (590)
+..|.|||+....-|+-.-+-+|........ .....++++|.+||. .+|..|++.+|.|+--|+..+...|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 5679999998888888888888888876552 456889999999996 57999999999999999999998887665
No 19
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=86.43 E-value=1.8 Score=52.61 Aligned_cols=19 Identities=74% Similarity=0.622 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040258 512 QQQQQHQHLQQMMLQQQQQ 530 (590)
Q Consensus 512 ~~~~~~~~~qq~~~~~~~~ 530 (590)
||||+++++||++--||+|
T Consensus 1858 ~qqq~iq~lq~~q~lqqqq 1876 (2131)
T KOG4369|consen 1858 QQQQQIQHLQQQQALQQQQ 1876 (2131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444433
No 20
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=86.39 E-value=3.1 Score=45.60 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=62.7
Q ss_pred CchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHH
Q 040258 29 FKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFRE 108 (590)
Q Consensus 29 ~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ 108 (590)
...++-.|.|||+...+-=+=.+|-.|-...... | ..-..|+.+|.|||+ +++.-|++-+|-|+.-|.......|+.
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~-~-~~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSD-P-DGGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCC-C-cccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 4578999999999888766666666555555443 3 334789999999996 689999999999999999887777877
Q ss_pred HH
Q 040258 109 EL 110 (590)
Q Consensus 109 el 110 (590)
|+
T Consensus 83 EV 84 (462)
T KOG2199|consen 83 EV 84 (462)
T ss_pred HH
Confidence 76
No 21
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.37 E-value=13 Score=45.75 Aligned_cols=183 Identities=21% Similarity=0.217 Sum_probs=101.0
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHHhcCC--cchHHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHH
Q 040258 71 CIHALAKRLSKTRNWIVAIKTLIVIHRTLREGD--PTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLE 148 (590)
Q Consensus 71 ~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~--psf~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLd 148 (590)
.+..|..|+. +-+.-|-.|.|-++||+.+.-. ..++.+++.- -.+..-| -|..||.||.-|.
T Consensus 360 ~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~l-------a~grl~D--------kSslVRk~Ai~Ll 423 (1251)
T KOG0414|consen 360 LLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLEL-------AIGRLED--------KSSLVRKNAIQLL 423 (1251)
T ss_pred HHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHH-------Hhccccc--------ccHHHHHHHHHHH
Confidence 6777888986 5688999999999999988744 2344444321 1122223 3578999998887
Q ss_pred HHHHHhhh----hccccccccccc---CCC---C-----CCccccccccCCHHHHHHhHHHHH----HHHHHHHcCCCCC
Q 040258 149 ERLECFRI----LRYDIESERLTK---SSP---G-----ATKVHSRTRLLNCDELLEQLPALQ----QLLFRLIGCSPEG 209 (590)
Q Consensus 149 eRL~~~r~----l~~d~~~~~l~~---~~~---~-----~~~~~~~~r~l~~e~LL~~L~~LQ----~LLd~ll~crP~g 209 (590)
..+--..- ++.+.-.....+ ..+ + ..+..+..+......+++..+.-. ........|++..
T Consensus 424 ~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~ 503 (1251)
T KOG0414|consen 424 SSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEH 503 (1251)
T ss_pred HHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchhh
Confidence 66543221 111110000000 000 0 000011112222223333333222 1112222222110
Q ss_pred ---------Cccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040258 210 ---------AAYHNYL-VQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCK 279 (590)
Q Consensus 210 ---------~a~~N~l-vl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkRf~kQ~e~L~~Fy~~Ck 279 (590)
....|.+ -+-+++.-++|.+.+-+.+.+++-.++..+|.=.+.|..++.+ ||-.|+
T Consensus 504 ~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Id--------------fl~~c~ 569 (1251)
T KOG0414|consen 504 CLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAID--------------FLVRCK 569 (1251)
T ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH--------------HHHHHH
Confidence 1112333 3346777779999999999999999999999999999888875 677777
Q ss_pred cccc
Q 040258 280 GLEL 283 (590)
Q Consensus 280 ~l~~ 283 (590)
..|+
T Consensus 570 ~F~I 573 (1251)
T KOG0414|consen 570 QFGI 573 (1251)
T ss_pred HhCC
Confidence 7766
No 22
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.16 E-value=16 Score=41.22 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=52.5
Q ss_pred HHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchH
Q 040258 32 LDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFR 107 (590)
Q Consensus 32 LevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~ 107 (590)
+.+.|-|||+-.-.-|+=-..-+|-...-... ......+++|.|||.. ++-.|++=+|.||--|+..-...|.
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~--~~~~eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh 74 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTE--GGPKEAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFH 74 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHH
Confidence 46789999999887787666655555543332 2335789999999974 4558889999999988876555554
No 23
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=47.66 E-value=20 Score=44.17 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=9.6
Q ss_pred CCCcccccCCCCCCch
Q 040258 489 QHDPFAVSNSIAPPTN 504 (590)
Q Consensus 489 ~~dpFaaS~~v~pp~~ 504 (590)
.+-||--|...-||+-
T Consensus 1408 ~q~p~~~~~q~~p~~q 1423 (1517)
T KOG1883|consen 1408 LQAPLLPSHQQMPPPQ 1423 (1517)
T ss_pred ccCccCchhhhCCCcc
Confidence 3566666666656553
No 24
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=47.05 E-value=28 Score=43.95 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 040258 259 NIYKRAGQQAESLADFYEYCKG 280 (590)
Q Consensus 259 eIYkRf~kQ~e~L~~Fy~~Ck~ 280 (590)
|+=+||..++++|+.|+-.-|.
T Consensus 1659 Elger~sds~~kvrqlLPlpKq 1680 (2220)
T KOG3598|consen 1659 ELGERFSDSTRKVRQLLPLPKQ 1680 (2220)
T ss_pred HHHhhhhHHHHHHHHhcCCCcc
Confidence 3447899999999999865443
No 25
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.53 E-value=62 Score=36.91 Aligned_cols=66 Identities=18% Similarity=0.458 Sum_probs=40.5
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 040258 185 CDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRA 264 (590)
Q Consensus 185 ~e~LL~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkRf 264 (590)
.++.|..+....++..+-+.|.|...+=...+ + ||+-+.+-.+|-.||.||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI--------------------~---------fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFI--------------------K---------FELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHH--------------------H---------HHHHhhHHHHHHHHHHHH
Confidence 46788888888889999999988653322221 1 444455555555555555
Q ss_pred HHHHHHHHHHHHHHh
Q 040258 265 GQQAESLADFYEYCK 279 (590)
Q Consensus 265 ~kQ~e~L~~Fy~~Ck 279 (590)
+-.+-++.+|..++|
T Consensus 201 V~~HP~v~~wikyar 215 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYAR 215 (677)
T ss_pred heecccHHHHHHHHH
Confidence 555555555555544
No 26
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=31.29 E-value=36 Score=43.06 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=12.1
Q ss_pred cCCCCCCCcHhhHHHHHHH
Q 040258 40 TNHVECPPKERHVRKLFSA 58 (590)
Q Consensus 40 Tshde~PPKeKHVr~IL~~ 58 (590)
|+.|--|.++|-.|.++.+
T Consensus 1187 ~~qdtepgaR~tcr~llhl 1205 (2220)
T KOG3598|consen 1187 TSQDTEPGARKTCRKLLHL 1205 (2220)
T ss_pred cccccCchHHHHHHHHHHH
Confidence 3445566777777777654
No 27
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=30.79 E-value=47 Score=26.47 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=25.5
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 040258 242 LVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELAR 285 (590)
Q Consensus 242 LLe~fFeM~~~Da~kaLeIYkRf~kQ~e~L~~Fy~~Ck~l~~~r 285 (590)
-|..||.|+..||.+.|.|-....| ..|+.+|+.|
T Consensus 9 ~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI~R 43 (52)
T PF02042_consen 9 DLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGIPR 43 (52)
T ss_pred HHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCCCC
Confidence 3568999999999999876443333 4688888653
No 28
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=30.16 E-value=8.6e+02 Score=27.64 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040258 251 RHDAVKALNIYKRAGQQAESLADFYEYCKGLEL 283 (590)
Q Consensus 251 ~~Da~kaLeIYkRf~kQ~e~L~~Fy~~Ck~l~~ 283 (590)
+++..+..+..+.+...+-++..|=+.=|...+
T Consensus 101 KPds~elad~LkPI~e~i~eI~~fkE~nRkS~~ 133 (480)
T KOG2675|consen 101 KPDSNELADLLKPINEEIGEINNFKEKNRKSPF 133 (480)
T ss_pred CCChHHHHHHhhhHHHhhhHHhhhhhcccCchH
Confidence 667777778888888888887777665554433
No 29
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.50 E-value=3e+02 Score=33.41 Aligned_cols=60 Identities=27% Similarity=0.455 Sum_probs=30.6
Q ss_pred HHHHHHHcCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---hHHHHHHHHHHHHHHHHHHHHHH
Q 040258 197 QLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMS---RHDAVKALNIYKRAGQQAESLAD 273 (590)
Q Consensus 197 ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~---~~Da~kaLeIYkRf~kQ~e~L~~ 273 (590)
+||.++|.|||... +|.+. ..=-||..|+|-.-++. +.|++--|--..|-..+..+|+.
T Consensus 144 qLlsalls~r~~e~---------------q~~ll---~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVA 205 (970)
T KOG0946|consen 144 QLLSALLSCRPTEL---------------QDALL---VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVA 205 (970)
T ss_pred HHHHHHHhcCCHHH---------------HHHHH---HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHH
Confidence 47888999998531 00000 01124444444444442 55555555445555666666665
Q ss_pred H
Q 040258 274 F 274 (590)
Q Consensus 274 F 274 (590)
|
T Consensus 206 F 206 (970)
T KOG0946|consen 206 F 206 (970)
T ss_pred H
Confidence 5
No 30
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.79 E-value=1.1e+02 Score=35.72 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=14.8
Q ss_pred CCCcceeeeccCCCCCccccccccccCCcchhhhh
Q 040258 421 SGSGWELALVTTPSNNNCQVVDSKLAGGFDKLLLD 455 (590)
Q Consensus 421 ~~~~WElaLV~~~s~~~~~~~~~~l~Gg~d~l~Ld 455 (590)
+.++-||-.| ...+..=|||-..+-||
T Consensus 80 ~~a~~El~~~--------srt~gs~a~g~~~~k~~ 106 (728)
T KOG4592|consen 80 GDADLELNIS--------SRTTGSEAGGSNRIKLD 106 (728)
T ss_pred cccccccccc--------cccccccccCCCCcccc
Confidence 6688888665 12222445665555554
No 31
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.76 E-value=1.5e+02 Score=33.44 Aligned_cols=81 Identities=16% Similarity=0.320 Sum_probs=58.7
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
..||.=|.|||+.-..--+=|+|.-++...... | .+-.-.+|.|+.++.....| -|+-+|-++..|++.|...|.+|
T Consensus 7 ~sle~wlnrATdp~~~eedw~ai~~fceqinkd-p-~gp~lAv~LlaHKiqSPqe~-EAl~altvLe~cmkncGekfH~e 83 (594)
T KOG1086|consen 7 ESLEYWLNRATDPSNDEEDWKAIDGFCEQINKD-P-EGPLLAVRLLAHKIQSPQEW-EALQALTVLEYCMKNCGEKFHEE 83 (594)
T ss_pred ccHHHHHHhccCccchHHHHHHHHHHHHHHhcC-C-CCchhHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhhhHHHHHH
Confidence 468889999999877444555666555554433 3 22234578899998755555 57889999999999999999888
Q ss_pred HHhh
Q 040258 110 LLNY 113 (590)
Q Consensus 110 ll~y 113 (590)
+-+|
T Consensus 84 vgkf 87 (594)
T KOG1086|consen 84 VGKF 87 (594)
T ss_pred HHHH
Confidence 7555
No 32
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.81 E-value=50 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040258 254 AVKALNIYKRAGQQAESLADFYEYCK 279 (590)
Q Consensus 254 a~kaLeIYkRf~kQ~e~L~~Fy~~Ck 279 (590)
-.+|=.||.||...+..++.+..+||
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 35677899999999999999998886
No 33
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=26.37 E-value=58 Score=40.67 Aligned_cols=11 Identities=64% Similarity=0.658 Sum_probs=5.1
Q ss_pred HHHHHHHhhhh
Q 040258 525 LQQQQQQHQQM 535 (590)
Q Consensus 525 ~~~~~~~~~~~ 535 (590)
+.+||+|++.+
T Consensus 1882 ~~~~~~q~~sq 1892 (2131)
T KOG4369|consen 1882 FQQQYQQHQSQ 1892 (2131)
T ss_pred HHHHHhcccCC
Confidence 33444555544
No 34
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=24.86 E-value=2.8e+02 Score=24.21 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcccc
Q 040258 226 KESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFY---EYCKGLEL 283 (590)
Q Consensus 226 kDS~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkRf~kQ~e~L~~Fy---~~Ck~l~~ 283 (590)
.+.=++|..+++.+. +..++++-++++..-+.+|++|| +|-+...-
T Consensus 3 ~eme~~y~~~~~~l~------------~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e~ 51 (90)
T PF14131_consen 3 QEMEKIYNEWCELLE------------ELEEALEKWQEAQPDYRKLRDYYGSEEWMEDYEA 51 (90)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHHH
Confidence 344456666655332 33478888899999999999999 45544443
No 35
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=22.16 E-value=1.2e+02 Score=34.24 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhCChHH-------------HHHHHHHHHHHHHH
Q 040258 236 NDGIINLVDMFFDMSRHD-------------AVKALNIYKRAGQQ 267 (590)
Q Consensus 236 ~dgiinLLe~fFeM~~~D-------------a~kaLeIYkRf~kQ 267 (590)
.+.++..||+|-++...+ |...+..|++.+.+
T Consensus 69 i~~L~~~Le~~d~~~~~~~~~~~~~~~v~~~c~t~i~af~~i~~~ 113 (445)
T PF10428_consen 69 IDQLVEALERFDSSSREDEPSPRVNENVIRACQTCISAFKHICSL 113 (445)
T ss_pred HHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888876444 44455556655544
No 36
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.50 E-value=1.6e+03 Score=27.72 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 040258 256 KALNIYKRAGQ 266 (590)
Q Consensus 256 kaLeIYkRf~k 266 (590)
+|-+.+++|-+
T Consensus 475 kA~e~~kk~~k 485 (1102)
T KOG1924|consen 475 KAAELEKKFDK 485 (1102)
T ss_pred HHHHHHHHHHH
Confidence 34455555544
No 37
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=21.43 E-value=2.9e+02 Score=32.31 Aligned_cols=9 Identities=44% Similarity=0.493 Sum_probs=6.4
Q ss_pred hHHHHHHHH
Q 040258 504 NVQMALLAQ 512 (590)
Q Consensus 504 ~vQma~m~~ 512 (590)
.||.+-|++
T Consensus 254 ~~~~~~~~~ 262 (757)
T KOG4368|consen 254 PVQLAFQQQ 262 (757)
T ss_pred HHHHHHHHH
Confidence 477777776
No 38
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=21.36 E-value=3e+02 Score=34.67 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 040258 216 LVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQA 268 (590)
Q Consensus 216 lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkRf~kQ~ 268 (590)
+-..+|....+|+..|+..|-| ||..+|+..-.++. .++|-+||...
T Consensus 447 ~f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe~ae~L--~~~~a~FCs~q 493 (1167)
T KOG3520|consen 447 SFLQRLKERRKESLVVIKRIGD----LLLDQFSGENAERL--KKTYAQFCSRQ 493 (1167)
T ss_pred HHHHHHHHHHHhccchHHHHHH----HHHHHcCchHHHHH--HHHHHHHhhcc
Confidence 4445666667777765555544 56667877655544 35555555443
No 39
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=20.87 E-value=52 Score=28.43 Aligned_cols=12 Identities=42% Similarity=1.010 Sum_probs=8.3
Q ss_pred HHHHHHhcC-Ccc
Q 040258 94 VIHRTLREG-DPT 105 (590)
Q Consensus 94 llHrLLreG-~ps 105 (590)
+|||||++| .|.
T Consensus 58 ILHrLLQng~SP~ 70 (78)
T PF08832_consen 58 ILHRLLQNGNSPV 70 (78)
T ss_dssp HHHHHHHCS----
T ss_pred HHHHHHhcCCCHH
Confidence 589999999 453
Done!