Query 040258
Match_columns 590
No_of_seqs 209 out of 562
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 1.9E-72 6.5E-77 582.2 29.5 284 1-309 3-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 8.5E-67 2.9E-71 542.2 25.8 268 25-309 24-291 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 1.5E-64 5.3E-69 516.3 24.3 243 30-286 27-269 (271)
4 1eyh_A Epsin; superhelix of he 99.5 7.1E-14 2.4E-18 130.2 11.3 119 28-152 2-121 (144)
5 1inz_A EPS15-interacting porte 99.5 1.2E-13 4.2E-18 129.1 11.0 119 28-152 20-139 (148)
6 3onk_A Epsin-3, ENT3; helix, p 99.2 3.9E-11 1.3E-15 112.4 11.3 121 25-151 5-127 (150)
7 1xgw_A Epsin 4; ENTH, enthopro 99.2 9.6E-11 3.3E-15 112.3 12.9 118 28-151 31-150 (176)
8 1vdy_A Hypothetical protein (R 98.4 2E-06 6.8E-11 79.6 10.9 115 33-151 13-128 (140)
9 1elk_A Target of MYB1; superhe 95.7 0.037 1.3E-06 51.7 9.1 80 29-110 13-93 (157)
10 3ldz_A STAM-1, signal transduc 95.5 0.05 1.7E-06 49.8 8.9 78 30-110 4-81 (140)
11 1x5b_A Signal transducing adap 95.4 0.047 1.6E-06 51.3 8.5 78 30-110 14-91 (163)
12 3rru_A TOM1L1 protein; structu 95.3 0.059 2E-06 50.2 8.8 79 30-110 15-93 (152)
13 3g2s_A C-terminal fragment of 95.3 0.089 3E-06 48.8 9.9 79 29-110 9-87 (149)
14 1mhq_A ADP-ribosylation factor 95.1 0.056 1.9E-06 50.1 8.1 76 32-110 2-77 (148)
15 1juq_A ADP-ribosylation factor 95.1 0.052 1.8E-06 51.4 8.0 78 30-110 12-89 (171)
16 3zyq_A Hepatocyte growth facto 94.7 0.094 3.2E-06 51.7 8.9 79 29-110 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 94.2 0.12 4E-06 50.5 8.4 77 31-110 5-81 (220)
18 3iot_A Maltose-binding protein 80.5 0.44 1.5E-05 50.2 1.0 13 184-196 128-140 (449)
19 3bej_E Nuclear receptor coacti 56.0 4.8 0.00016 26.3 1.4 12 94-105 14-25 (26)
20 3iot_A Maltose-binding protein 46.2 6.2 0.00021 41.3 1.3 14 251-264 185-198 (449)
21 2prg_C Nuclear receptor coacti 29.1 20 0.0007 30.1 1.5 12 94-105 67-78 (88)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=1.9e-72 Score=582.19 Aligned_cols=284 Identities=25% Similarity=0.471 Sum_probs=244.9
Q ss_pred CcchhHHHHHHhhhc-cccceeeeeecCCCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhh
Q 040258 1 MGTFQSFRKAYGALK-DSTKVGLAKVNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRL 79 (590)
Q Consensus 1 m~~~~~~rka~GalK-D~tsig~Akv~~~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL 79 (590)
|++ ++||+++|++| |+|++ ++++||+|||+|+++|||+||||+||.+|+.++ +++++|+++|.+|
T Consensus 3 ~~~-~~~~~~~~a~k~~~~~~----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R- 68 (299)
T 1hx8_A 3 MAG-QTINDRLLAARHSLAGQ----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIER- 68 (299)
T ss_dssp --------------------C----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHH-
T ss_pred Cch-HHHHHHHHHHhhccchh----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhh-
Confidence 453 78999999999 98874 688899999999999999999999999999865 7899999999999
Q ss_pred ccCCChhHHHHHHHHHHHHHhcCCcchHHHHHhhhhcCcccccccccCCCC-----------CCCCcccHHHHHHHHHHH
Q 040258 80 SKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSHRGHILQISNFKDDSS-----------PLAWDCSAWVRTYALFLE 148 (590)
Q Consensus 80 ~kTrnWiVAlKtLIllHrLLreG~psf~~ell~y~rr~~iL~Ls~F~D~ss-----------~~s~d~safVR~Ya~YLd 148 (590)
.+++||+||||||||||||||||||+|.+++. +++++|+|++|+|+++ +.+||||.|||+|++||+
T Consensus 69 ~~~~~w~va~K~LivlH~llreG~~~~~~~l~---~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~ 145 (299)
T 1hx8_A 69 SQNANWVVVYKSLITTHHLMAYGNERFMQYLA---SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLN 145 (299)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH---HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH---hCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHH
Confidence 58999999999999999999999999988873 3567999999999865 357899999999999999
Q ss_pred HHHHHhhhhcccccccccccCCCCCCccccccccCCHHHHHHhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHH
Q 040258 149 ERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKES 228 (590)
Q Consensus 149 eRL~~~r~l~~d~~~~~l~~~~~~~~~~~~~~r~l~~e~LL~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS 228 (590)
+|+.+|+.+++|++..+ .+ .+..++++|+++.||++++.||++||++++|+|.+.+.+|+|+++||++||+||
T Consensus 146 ~r~~~f~~~~~d~~~~~-----~~--~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds 218 (299)
T 1hx8_A 146 EKSLSYRAMAFDFCKVK-----RG--KEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDL 218 (299)
T ss_dssp HHHHHHHHHSSCGGGC------------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccccc-----cC--ccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHH
Confidence 99988999999987321 11 134578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCcchHHHHHHHHH
Q 040258 229 FKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIR 308 (590)
Q Consensus 229 ~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkRf~kQ~e~L~~Fy~~Ck~l~~~r~i~iP~L~~~P~sfL~~LEEylr 308 (590)
++||+++|+||++|||+||+|++.||++||+||+||.+|+++|++||++||++++++ ++||+|+++|++||++|||||+
T Consensus 219 ~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~ 297 (299)
T 1hx8_A 219 IRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLA 297 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999977 8999999999999999999998
Q ss_pred h
Q 040258 309 E 309 (590)
Q Consensus 309 d 309 (590)
+
T Consensus 298 ~ 298 (299)
T 1hx8_A 298 T 298 (299)
T ss_dssp T
T ss_pred h
Confidence 6
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=8.5e-67 Score=542.19 Aligned_cols=268 Identities=24% Similarity=0.466 Sum_probs=231.3
Q ss_pred ecCCCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCc
Q 040258 25 VNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDP 104 (590)
Q Consensus 25 v~~~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~p 104 (590)
|.+ +++++||+|||+|+++|||+||||+||.+|+.++ +++.+|+++|.+|++ ++||+|+||+|||||||||+|||
T Consensus 24 ~~~--s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~--~~~~~i~~~L~~Rl~-~~~w~vv~KaLivlH~llreG~~ 98 (310)
T 3zym_A 24 VTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNE 98 (310)
T ss_dssp CHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCH
T ss_pred ccc--cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCC--CcHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHhcCCH
Confidence 444 8999999999999999999999999999999865 678999999999998 89999999999999999999999
Q ss_pred chHHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCccccccccCC
Q 040258 105 TFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRTRLLN 184 (590)
Q Consensus 105 sf~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~l~~d~~~~~l~~~~~~~~~~~~~~r~l~ 184 (590)
+|.+++. +++++|+|++|+|++++.+|||+.|||+|++||++|+.+|+.+++|++..+. + ...++++|+
T Consensus 99 ~~l~~~~---~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~~~~-----~---~~~~~r~~~ 167 (310)
T 3zym_A 99 RFIQYLA---SRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKR-----G---ADGVMRTMN 167 (310)
T ss_dssp HHHHHHH---HCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTTSCC-----S---TTSHHHHCC
T ss_pred HHHHHHH---hCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCcccccC-----C---CCCccccCC
Confidence 9877652 3567999999999887778999999999999999999999999999874221 1 134678999
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 040258 185 CDELLEQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRA 264 (590)
Q Consensus 185 ~e~LL~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkRf 264 (590)
++.||++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+++|+||++|||+||||++.||++||+||+||
T Consensus 168 ~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~~da~~al~iykrf 247 (310)
T 3zym_A 168 TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKF 247 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCcCCCCCcchHHHHHHHHHh
Q 040258 265 GQQAESLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIRE 309 (590)
Q Consensus 265 ~kQ~e~L~~Fy~~Ck~l~~~r~i~iP~L~~~P~sfL~~LEEylrd 309 (590)
.+|+++|++||++||++|+.+. +||+|+++|++++..++.-|.+
T Consensus 248 ~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~~~p~d~l~~lq~~i~e 291 (310)
T 3zym_A 248 LTRMTRISEFLKVAEQVGIDRG-DISGSGSGHMDRVRNLQSEVEG 291 (310)
T ss_dssp HHHHHHHHHHHHHHHHTC-------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCC-CCCCCCcccchHHHHHHHHHHH
Confidence 9999999999999999998776 9999999999999999998887
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=1.5e-64 Score=516.32 Aligned_cols=243 Identities=26% Similarity=0.515 Sum_probs=226.6
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
+++++||+|||+|+++|||+||||+||.+|+.++ +++.+|++.|.+|++ ++||+|+||+|||||||||+|||+|.++
T Consensus 27 s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~--~~~~~~~~~L~~Rl~-~~~w~v~~KaLivlH~llreG~~~~l~~ 103 (271)
T 3zyl_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQY 103 (271)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTT--SCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCC--CcHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 8999999999999999999999999999999864 678999999999998 8999999999999999999999998776
Q ss_pred HHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCccccccccCCHHHHH
Q 040258 110 LLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLECFRILRYDIESERLTKSSPGATKVHSRTRLLNCDELL 189 (590)
Q Consensus 110 ll~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~~~r~l~~d~~~~~l~~~~~~~~~~~~~~r~l~~e~LL 189 (590)
+ .+++++|+|++|+|++++.+|||++|||+|++||++|+.+|+.+++|++..+. + ...++++|++++||
T Consensus 104 ~---~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~~k~-----~---~~~~~r~~~~~~Ll 172 (271)
T 3zyl_A 104 L---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKR-----G---ADGVMRTMNTEKLL 172 (271)
T ss_dssp H---HHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTSCC-----S---TTSHHHHCCHHHHH
T ss_pred H---HhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCccccCC-----C---CCCccccCCHHHHH
Confidence 5 23567999999999987778999999999999999999999999999974321 1 13478899999999
Q ss_pred HhHHHHHHHHHHHHcCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 040258 190 EQLPALQQLLFRLIGCSPEGAAYHNYLVQYALALVLKESFKIYCAINDGIINLVDMFFDMSRHDAVKALNIYKRAGQQAE 269 (590)
Q Consensus 190 ~~L~~LQ~LLd~ll~crP~g~a~~N~lvl~AL~lLVkDS~~LY~~i~dgiinLLe~fFeM~~~Da~kaLeIYkRf~kQ~e 269 (590)
++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+.+|+|||||||+||||++.||++||+||+||.+|++
T Consensus 173 ~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykrf~~Q~~ 252 (271)
T 3zyl_A 173 KTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMT 252 (271)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccc
Q 040258 270 SLADFYEYCKGLELARN 286 (590)
Q Consensus 270 ~L~~Fy~~Ck~l~~~r~ 286 (590)
+|++||++||++|++|+
T Consensus 253 ~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 253 RISEFLKVAEQVGIDRG 269 (271)
T ss_dssp HHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHcCcCcC
Confidence 99999999999999986
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.50 E-value=7.1e-14 Score=130.19 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=99.4
Q ss_pred CCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccC-CChhHHHHHHHHHHHHHhcCCcch
Q 040258 28 EFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKT-RNWIVAIKTLIVIHRTLREGDPTF 106 (590)
Q Consensus 28 ~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kT-rnWiVAlKtLIllHrLLreG~psf 106 (590)
++++.++.|..|||++..+|+.+++.+|..+|+.. .++..++..|.+||... ++|.+++|+|+|||.||+.|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 57899999999999999999999999999999975 57889999999999743 699999999999999999999998
Q ss_pred HHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHH
Q 040258 107 REELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLE 152 (590)
Q Consensus 107 ~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~ 152 (590)
..++... ...|..|.+|.--. ..+.|.+..||.+|++|.+-|.
T Consensus 79 v~~~~~~--~~~i~~L~~F~y~d-~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 79 SQQCKEN--MYAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHHHHT--HHHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--hHHHhhhccceeeC-CCccchHHHHHHHHHHHHHHHC
Confidence 8776433 23477888874211 2457899999999999955443
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.48 E-value=1.2e-13 Score=129.12 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=100.2
Q ss_pred CCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhcc-CCChhHHHHHHHHHHHHHhcCCcch
Q 040258 28 EFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSK-TRNWIVAIKTLIVIHRTLREGDPTF 106 (590)
Q Consensus 28 ~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~k-TrnWiVAlKtLIllHrLLreG~psf 106 (590)
++++.++.|..|||++..+|+.+++.+|..+|+.. .++..++..|.+||.. .++|.+++|+|+|||.||+.|++.|
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS---HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 47999999999999999999999999999999985 5788999999999974 3799999999999999999999998
Q ss_pred HHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHHH
Q 040258 107 REELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERLE 152 (590)
Q Consensus 107 ~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL~ 152 (590)
..++... ...|..|.+|.-- ...+.|.+..||.+|++|.+-|.
T Consensus 97 v~~~r~~--~~~I~~L~~F~y~-d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 97 SQQCKEN--MYAVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHT--HHHHHHHHHCCCC-CSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHh--HHHHHhhcceeee-CCCCcCchHHHHHHHHHHHHHhC
Confidence 8776433 2246777776321 12457899999999999988764
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.23 E-value=3.9e-11 Score=112.40 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=96.2
Q ss_pred ecCCCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccC--CChhHHHHHHHHHHHHHhcC
Q 040258 25 VNSEFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKT--RNWIVAIKTLIVIHRTLREG 102 (590)
Q Consensus 25 v~~~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kT--rnWiVAlKtLIllHrLLreG 102 (590)
|.-++++.++.|..|||.+..+|..+++.+|..+|+.. .++..++..|.+||... ++|.+++|||+||+.||+.|
T Consensus 5 ~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 5 VDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF---REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ---CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 33468999999999999999999999999999999975 56788999999999743 58999999999999999999
Q ss_pred CcchHHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 040258 103 DPTFREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERL 151 (590)
Q Consensus 103 ~psf~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 151 (590)
++.|..++.... ..|-.|.+|.-.. ..+.|.+.-||..|+.|.+-|
T Consensus 82 se~vv~~~r~~~--~~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~LL 127 (150)
T 3onk_A 82 SERFIDDTRNSI--NLIRILETFHYID-SQGRDQGINVRTRVKALIELL 127 (150)
T ss_dssp CHHHHHHHHTTH--HHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--HHHHhhhcccccC-CCCCchHHHHHHHHHHHHHHH
Confidence 999887764321 1244467764211 235688999999999995443
No 7
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.21 E-value=9.6e-11 Score=112.33 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=96.2
Q ss_pred CCchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhh-cc-CCChhHHHHHHHHHHHHHhcCCcc
Q 040258 28 EFKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRL-SK-TRNWIVAIKTLIVIHRTLREGDPT 105 (590)
Q Consensus 28 ~~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL-~k-TrnWiVAlKtLIllHrLLreG~ps 105 (590)
++++.++.|..|||.+..+|..+++.+|..+|+.. .++..++..|.+|| .. .++|.+++|+|+||+.||+.|++.
T Consensus 31 ~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~---~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~ 107 (176)
T 1xgw_A 31 NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY---EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSER 107 (176)
T ss_dssp CCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHH
Confidence 57999999999999999999999999999999986 47889999999996 43 489999999999999999999998
Q ss_pred hHHHHHhhhhcCcccccccccCCCCCCCCcccHHHHHHHHHHHHHH
Q 040258 106 FREELLNYSHRGHILQISNFKDDSSPLAWDCSAWVRTYALFLEERL 151 (590)
Q Consensus 106 f~~ell~y~rr~~iL~Ls~F~D~ss~~s~d~safVR~Ya~YLdeRL 151 (590)
|.+++.... ..|-.|.+|.-- ...+.|.+..||..|+.|.+-|
T Consensus 108 vv~~~r~~i--~~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~LL 150 (176)
T 1xgw_A 108 VVTSAREHI--YDLRSLENYHFV-DEHGKDQGINIRQKVKELVEFA 150 (176)
T ss_dssp HHHHHHHTH--HHHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhH--HHHHhhccCeeE-CCCCCChHHHHHHHHHHHHHHH
Confidence 877763221 124456777421 1235789999999999995443
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.36 E-value=2e-06 Score=79.62 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=92.3
Q ss_pred HHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHHHh
Q 040258 33 DIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLN 112 (590)
Q Consensus 33 evAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ell~ 112 (590)
.+.|.+||+.++.||----+.+|-..|+.+.. ..+..++..|.+||.+ ++|.|.+|+|-+|-.|++.|++.|..++..
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLDN-KSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 45799999999999988889999999988631 1246889999999975 689999999999999999999999888754
Q ss_pred hhhcCcccccccccCCCCC-CCCcccHHHHHHHHHHHHHH
Q 040258 113 YSHRGHILQISNFKDDSSP-LAWDCSAWVRTYALFLEERL 151 (590)
Q Consensus 113 y~rr~~iL~Ls~F~D~ss~-~s~d~safVR~Ya~YLdeRL 151 (590)
.. ..|-.+.+|.....+ .+.+.+..||.-|+=|-+-|
T Consensus 91 ~~--~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 91 NS--VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TT--HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred hH--HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 42 236677888754332 46788999999998777654
No 9
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.71 E-value=0.037 Score=51.66 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=68.8
Q ss_pred Cc-hHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchH
Q 040258 29 FK-DLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFR 107 (590)
Q Consensus 29 ~~-dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~ 107 (590)
|+ .++..|-|||+....-|+--.+-+|........ .....++++|.+||...+|..|++-+|.|+.-|+..+.+.|.
T Consensus 13 ~~s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh 90 (157)
T 1elk_A 13 FSSPVGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFH 90 (157)
T ss_dssp GGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCcHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 53 799999999999988889888888888776542 456889999999996557999999999999999999988888
Q ss_pred HHH
Q 040258 108 EEL 110 (590)
Q Consensus 108 ~el 110 (590)
.++
T Consensus 91 ~ev 93 (157)
T 1elk_A 91 VLV 93 (157)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 10
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.47 E-value=0.05 Score=49.79 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=67.4
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
.-++..|.|||+....-|+--.+-+|....... + .....++.+|.+||. .+|..|++-+|.|+.-|+..+.+.|..+
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~-~-~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQS-R-TGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTS-T-THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCC-C-cCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 357899999999998889999999998888765 3 456789999999996 5799999999999999999999888766
Q ss_pred H
Q 040258 110 L 110 (590)
Q Consensus 110 l 110 (590)
+
T Consensus 81 v 81 (140)
T 3ldz_A 81 V 81 (140)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.37 E-value=0.047 Score=51.35 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=66.9
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
..++..|.|||+....-|+--.+-+|........ .....++.+|.+||. .+|..|++-+|.|+.-|+..+...|..+
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4588999999999988899999998888876642 456789999999996 5789999999999999999988888766
Q ss_pred H
Q 040258 110 L 110 (590)
Q Consensus 110 l 110 (590)
+
T Consensus 91 v 91 (163)
T 1x5b_A 91 V 91 (163)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.28 E-value=0.059 Score=50.22 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=68.8
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
+.++..|.|||+....-|+--.+-+|........ .....++.+|.+||...+|..|++-+|.|+.-|+..+...|..+
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6899999999999998899999988888776642 45688999999999755688899999999999999999999877
Q ss_pred H
Q 040258 110 L 110 (590)
Q Consensus 110 l 110 (590)
+
T Consensus 93 i 93 (152)
T 3rru_A 93 I 93 (152)
T ss_dssp H
T ss_pred H
Confidence 6
No 13
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.25 E-value=0.089 Score=48.83 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=69.6
Q ss_pred CchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHH
Q 040258 29 FKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFRE 108 (590)
Q Consensus 29 ~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ 108 (590)
...++..|.|||+....-|+--.+-+|....... + .....++++|.+||. .+|..|++-+|.|+.-|+..+...|..
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~-~-~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNED-F-EGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGS-S-SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCC-C-CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3689999999999999889999999998888765 3 456789999999996 689999999999999999999998877
Q ss_pred HH
Q 040258 109 EL 110 (590)
Q Consensus 109 el 110 (590)
++
T Consensus 86 ei 87 (149)
T 3g2s_A 86 EV 87 (149)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 14
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.13 E-value=0.056 Score=50.07 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=66.2
Q ss_pred HHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 040258 32 LDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREEL 110 (590)
Q Consensus 32 LevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~el 110 (590)
++..|-|||+....-|+--.+-+|....... + .....++++|.+||. .+|..|++-+|.|+.-|+..+.+.|..++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~-~-~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTD-P-NGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHS-S-HHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 7889999999998889999998888887665 2 456789999999995 68999999999999999999888887776
No 15
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.10 E-value=0.052 Score=51.44 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=67.9
Q ss_pred chHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHH
Q 040258 30 KDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREE 109 (590)
Q Consensus 30 ~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~e 109 (590)
..++..|-|||+....-|+--.+-+|........ .....++++|.+||. .+|-.|++-+|.|+.-|+..+...|..+
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 5799999999999988899999999988877653 456789999999995 6899999999999999999988888766
Q ss_pred H
Q 040258 110 L 110 (590)
Q Consensus 110 l 110 (590)
+
T Consensus 89 v 89 (171)
T 1juq_A 89 V 89 (171)
T ss_dssp H
T ss_pred H
Confidence 5
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=94.70 E-value=0.094 Score=51.66 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=67.9
Q ss_pred CchHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHH
Q 040258 29 FKDLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFRE 108 (590)
Q Consensus 29 ~~dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~ 108 (590)
.+.++..|.|||+....-|+--.+-+|-...... + .....++.+|.+||. .+|..|++-+|.|+.-++..+...|..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~-~-~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQG-D-TQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTT-S-SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3689999999999998889999999988887654 2 446789999999996 689999999999999999998888876
Q ss_pred HH
Q 040258 109 EL 110 (590)
Q Consensus 109 el 110 (590)
|+
T Consensus 83 ei 84 (226)
T 3zyq_A 83 EV 84 (226)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.24 E-value=0.12 Score=50.53 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=66.1
Q ss_pred hHHHHHHhhcCCCCCCCcHhhHHHHHHHhccCCCCccHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhcCCcchHHHH
Q 040258 31 DLDIAIVKATNHVECPPKERHVRKLFSATSVIRPRADVAYCIHALAKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREEL 110 (590)
Q Consensus 31 dLevAIvKATshde~PPKeKHVr~IL~~Ts~srp~a~v~~~v~aLsrRL~kTrnWiVAlKtLIllHrLLreG~psf~~el 110 (590)
.++..|-|||+....-|+-..+-+|........ .....++.+|.+||. .+|..|++-+|.|+.-++..+...|..++
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~--~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKD--VTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC--cCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 489999999999988899999999888877542 456789999999996 58999999999999999999887776654
No 18
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=80.47 E-value=0.44 Score=50.18 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=7.7
Q ss_pred CHHHHHHhHHHHH
Q 040258 184 NCDELLEQLPALQ 196 (590)
Q Consensus 184 ~~e~LL~~L~~LQ 196 (590)
+.++|++...+|.
T Consensus 128 Twdel~~~a~~l~ 140 (449)
T 3iot_A 128 TWEEIPALDKELK 140 (449)
T ss_dssp BGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4467776665554
No 19
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=55.98 E-value=4.8 Score=26.28 Aligned_cols=12 Identities=50% Similarity=1.126 Sum_probs=10.2
Q ss_pred HHHHHHhcCCcc
Q 040258 94 VIHRTLREGDPT 105 (590)
Q Consensus 94 llHrLLreG~ps 105 (590)
++||||++|.|.
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 689999999874
No 20
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=46.22 E-value=6.2 Score=41.32 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHH
Q 040258 251 RHDAVKALNIYKRA 264 (590)
Q Consensus 251 ~~Da~kaLeIYkRf 264 (590)
..+.+++|+.|++.
T Consensus 185 ~~~~~~al~~~~~l 198 (449)
T 3iot_A 185 NAGAKAGLTFLVDL 198 (449)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34555555544433
No 21
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=29.11 E-value=20 Score=30.09 Aligned_cols=12 Identities=50% Similarity=1.126 Sum_probs=10.5
Q ss_pred HHHHHHhcCCcc
Q 040258 94 VIHRTLREGDPT 105 (590)
Q Consensus 94 llHrLLreG~ps 105 (590)
+|||||++|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999875
Done!