Query 040260
Match_columns 445
No_of_seqs 189 out of 787
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 89.3 2.2 7.5E-05 41.8 10.7 78 201-290 126-208 (444)
2 4djk_A Probable glutamate/gamm 89.2 1.1 3.9E-05 44.8 8.7 100 201-305 131-238 (511)
3 3l1l_A Arginine/agmatine antip 85.0 1.8 6.1E-05 42.4 7.2 80 202-290 127-211 (445)
4 3kcp_B Cellulosome anchoring p 27.4 17 0.00057 33.9 0.7 14 246-259 55-68 (187)
5 2bm3_A Type 2 cohesin, scaffol 27.2 17 0.00058 33.3 0.7 14 246-259 43-56 (166)
6 3bwz_A Cellulosomal scaffoldin 21.5 25 0.00087 32.5 0.7 13 246-258 41-53 (181)
7 3bkd_A Transmembrane domain of 19.6 68 0.0023 20.9 2.2 15 57-71 8-22 (26)
8 3lbw_A M2 protein; proton chan 19.3 72 0.0025 20.3 2.2 15 57-71 5-19 (23)
9 1nrp_R Receptor based peptide 18.1 40 0.0014 21.8 0.9 16 322-340 5-20 (26)
10 3ghp_A Cellulosomal scaffoldin 17.2 36 0.0012 32.5 0.7 14 246-259 46-59 (227)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=89.30 E-value=2.2 Score=41.84 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=44.6
Q ss_pred chhHHHHHHHHHHhhhccccccccc---hhhHHHHHHHHHHHHHHHhhcccCcceeee-cCHHHHHHHHHhcCcch-hhh
Q 040260 201 VPVACAILVFLFSLQHYGTHRVGFL---FAPIVITWLLCISAIGLYNIFHWNPHVFKA-LSPYYMYKFLKKTQKGG-WMS 275 (445)
Q Consensus 201 v~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~~WF~~i~~iGiynI~~~~P~Vl~A-lnP~Ya~~f~~~~~~~g-~~~ 275 (445)
..+++++++.+..+..+|.+..+++ +..+.++=++.+.+.|+.+. +|+-+.. ++|. +..+ +..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~ 193 (444)
T 3gia_A 126 AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFA 193 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHH
Confidence 3567888888888999998766554 44444444444445555443 4543332 3332 1112 233
Q ss_pred hcceeeeeccchhhh
Q 040260 276 LGGILLCITGSEAMY 290 (445)
Q Consensus 276 LG~V~L~iTGaEALy 290 (445)
+...+.+.+|-|+.-
T Consensus 194 ~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 194 SAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 444567889999763
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=89.17 E-value=1.1 Score=44.75 Aligned_cols=100 Identities=17% Similarity=0.127 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHhhhccccccccchhhH----HHHHHHHHHHHHHHhhcccCcceeeecCHHHHHHHHHhc--Ccchhh
Q 040260 201 VPVACAILVFLFSLQHYGTHRVGFLFAPI----VITWLLCISAIGLYNIFHWNPHVFKALSPYYMYKFLKKT--QKGGWM 274 (445)
Q Consensus 201 v~is~~ILv~LF~iQ~~GT~kvg~~FgPI----m~~WF~~i~~iGiynI~~~~P~Vl~AlnP~Ya~~f~~~~--~~~g~~ 274 (445)
..+++++++++..+.-+|.+..+++..-. +++-++.+.++|+..+...+|.-++ .|+ +.+..+ +...|.
T Consensus 131 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~ 205 (511)
T 4djk_A 131 TIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE-MDS----KTFFPDFSKVGTLV 205 (511)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-----------------CCCCCTTSTTTTT
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-Ccc----cccCCCcccchHHH
Confidence 45788888888999999988777665332 2223445556677665543332111 111 111111 234566
Q ss_pred hhcceeeeeccchhhhhccCCCc--ccceeehh
Q 040260 275 SLGGILLCITGSEAMYADLGHFS--QLSIKIAF 305 (445)
Q Consensus 275 ~LG~V~L~iTGaEALyADlGHFg--~~~Ir~aw 305 (445)
.+..++.+.+|-|+.-.=-+-.- +|.+..+=
T Consensus 206 ~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai 238 (511)
T 4djk_A 206 VFVAFILSYMGVEASATHVNEMSNPGRDYPLAM 238 (511)
T ss_dssp THHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhccCcccchhHHH
Confidence 77788899999998644333332 34444443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=85.00 E-value=1.8 Score=42.37 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHhhhccccccccc---hhhHHHHHHHHHHHHHHHhhcccCccee-eecCHHHHHHHHHhcCcch-hhhh
Q 040260 202 PVACAILVFLFSLQHYGTHRVGFL---FAPIVITWLLCISAIGLYNIFHWNPHVF-KALSPYYMYKFLKKTQKGG-WMSL 276 (445)
Q Consensus 202 ~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~~WF~~i~~iGiynI~~~~P~Vl-~AlnP~Ya~~f~~~~~~~g-~~~L 276 (445)
.+++++++.+..+..+|.+..+++ +.++.++=++.+.+ ..+.+.+|+.+ ..++|.-. .+..+ +..+
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i---~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 197 (445)
T 3l1l_A 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAV---FGWFWFRGETYMAAWNVSGL------GTFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH---TTSTTCCCCCCCCC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhChhhcccccCccCC------ccHHHHHHHH
Confidence 467777777888888888777665 34433332333333 33334455544 34444311 01111 3344
Q ss_pred cceeeeeccchhhh
Q 040260 277 GGILLCITGSEAMY 290 (445)
Q Consensus 277 G~V~L~iTGaEALy 290 (445)
...+.+.+|-|+.-
T Consensus 198 ~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 198 NVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHTTTTTTHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 55667788988753
No 4
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=27.45 E-value=17 Score=33.88 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=12.6
Q ss_pred cccCcceeeecCHH
Q 040260 246 FHWNPHVFKALSPY 259 (445)
Q Consensus 246 ~~~~P~Vl~AlnP~ 259 (445)
++|||+||+|+||.
T Consensus 55 IKYDP~VLqaV~p~ 68 (187)
T 3kcp_B 55 IVYDPKVLMAVDPE 68 (187)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeEChhHeeecccC
Confidence 47999999999996
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=27.18 E-value=17 Score=33.33 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=12.3
Q ss_pred cccCcceeeecCHH
Q 040260 246 FHWNPHVFKALSPY 259 (445)
Q Consensus 246 ~~~~P~Vl~AlnP~ 259 (445)
++|||+||+|.||.
T Consensus 43 IKYDP~VLqaVn~~ 56 (166)
T 2bm3_A 43 IVYDPKVLMAVDPE 56 (166)
T ss_dssp EECCTTTEEEECTT
T ss_pred EEECccceEeecCC
Confidence 47999999999993
No 6
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=21.46 E-value=25 Score=32.55 Aligned_cols=13 Identities=15% Similarity=0.672 Sum_probs=11.9
Q ss_pred cccCcceeeecCH
Q 040260 246 FHWNPHVFKALSP 258 (445)
Q Consensus 246 ~~~~P~Vl~AlnP 258 (445)
++|||+||+|.||
T Consensus 41 IKYDP~VLQaV~~ 53 (181)
T 3bwz_A 41 MKYDPAVLQPVTS 53 (181)
T ss_dssp EECCTTTEEEECT
T ss_pred cccChhHeeeecC
Confidence 4799999999999
No 7
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=19.61 E-value=68 Score=20.95 Aligned_cols=15 Identities=33% Similarity=0.930 Sum_probs=13.3
Q ss_pred hhhHHhhHHHHHHHH
Q 040260 57 NEEIYGVLSFVFWTL 71 (445)
Q Consensus 57 ~~~vlGvlSLIfWtL 71 (445)
..+++|++-||.|-+
T Consensus 8 aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 8 AASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999999976
No 8
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=19.25 E-value=72 Score=20.34 Aligned_cols=15 Identities=27% Similarity=0.784 Sum_probs=13.1
Q ss_pred hhhHHhhHHHHHHHH
Q 040260 57 NEEIYGVLSFVFWTL 71 (445)
Q Consensus 57 ~~~vlGvlSLIfWtL 71 (445)
..+++|++-||.|-+
T Consensus 5 aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 5 AASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 468999999999976
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=18.09 E-value=40 Score=21.75 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.1
Q ss_pred hhhhcCCCccccccCccee
Q 040260 322 AYLSKHHNIESDYRIGFYV 340 (445)
Q Consensus 322 A~Ll~~p~~~~~~~npFy~ 340 (445)
++|++|| .+.-.|||.
T Consensus 5 sfllrnp---ndkyepfwe 20 (26)
T 1nrp_R 5 SFLLRNP---NDKYEPFWE 20 (26)
T ss_pred hhhhcCC---CcccCcccc
Confidence 6899999 677788875
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=17.23 E-value=36 Score=32.53 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=12.4
Q ss_pred cccCcceeeecCHH
Q 040260 246 FHWNPHVFKALSPY 259 (445)
Q Consensus 246 ~~~~P~Vl~AlnP~ 259 (445)
++|||+||+|.||.
T Consensus 46 IKYDP~vLQaVnp~ 59 (227)
T 3ghp_A 46 IKYDPTVLQAVNPK 59 (227)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeChhheecccCC
Confidence 47999999999994
Done!