Query 040260
Match_columns 445
No_of_seqs 189 out of 787
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 10:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040260.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040260hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bm3a1 b.2.2.2 (A:5-166) Scaf 22.7 11 0.0008 32.3 0.7 14 246-259 39-52 (162)
2 d2yvxa3 f.57.1.1 (A:276-448) M 19.0 22 0.0016 30.2 1.9 115 311-441 12-128 (173)
3 d1tyja1 b.2.2.2 (A:2-171) Cell 17.9 13 0.00097 32.0 0.2 14 246-259 37-50 (170)
4 d1zv9a1 b.2.2.2 (A:3-173) Cell 15.9 19 0.0014 31.0 0.7 13 246-258 39-51 (171)
5 d2h8pc1 f.14.1.1 (C:22-78) Pot 12.3 30 0.0022 24.5 0.8 39 312-355 16-54 (57)
6 d1krha2 c.25.1.2 (A:206-338) B 7.5 1.2E+02 0.0088 22.8 2.9 40 366-405 17-56 (133)
7 d1jb0i_ f.23.17.1 (I:) Subunit 6.1 20 0.0015 23.7 -2.2 20 398-417 13-32 (38)
8 d2j5pa1 a.4.5.67 (A:1261-1329) 5.9 75 0.0055 23.3 0.7 9 99-107 25-33 (69)
9 d2bnma1 a.35.1.3 (A:6-76) Hydr 5.8 65 0.0047 23.2 0.3 13 88-100 39-51 (71)
10 d1tvca2 c.25.1.2 (A:111-251) M 5.4 2.2E+02 0.016 21.5 3.4 41 366-406 20-60 (141)
No 1
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=22.68 E-value=11 Score=32.33 Aligned_cols=14 Identities=29% Similarity=0.645 Sum_probs=12.6
Q ss_pred cccCcceeeecCHH
Q 040260 246 FHWNPHVFKALSPY 259 (445)
Q Consensus 246 ~~~~P~Vl~AlnP~ 259 (445)
++|||+||+|.||.
T Consensus 39 IKYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 39 IVYDPKVLMAVDPE 52 (162)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeCHHHhcccccC
Confidence 47999999999996
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=19.01 E-value=22 Score=30.24 Aligned_cols=115 Identities=9% Similarity=0.035 Sum_probs=67.8
Q ss_pred HHHHHhhcch--hhhhhcCCCccccccCcceeeccCcchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHhCCCcceeEE
Q 040260 311 PSLILAYMGQ--AAYLSKHHNIESDYRIGFYVSVPEKLRWPVLAIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKII 388 (445)
Q Consensus 311 P~LlL~Y~GQ--gA~Ll~~p~~~~~~~npFy~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~fPr~kI~ 388 (445)
|-|++|.+|+ .|+++++- |+.-+-+-. =..+.|+ ++-.+--.+||+. +++-+++++|..-+-+
T Consensus 12 pWL~i~l~~~~~~a~ii~~F---e~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~-- 76 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGF---ESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD-- 76 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS--
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh--
Confidence 4456666655 46677655 332222211 1256665 6677888899987 4888999999643321
Q ss_pred ecCCcccCceeechhHHHHHHHHHhheeeecCchhHHhhhhhhhHHHHHHhhh
Q 040260 389 HTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTC 441 (445)
Q Consensus 389 hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~ 441 (445)
.-+....+..+-.+|=+.+-..+.....+++...++-+=|++...+|++.++
T Consensus 77 -~~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~ 128 (173)
T d2yvxa3 77 -WRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANL 128 (173)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 1122445567777777666655555555566556666556666655555544
No 3
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=17.92 E-value=13 Score=31.98 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=12.5
Q ss_pred cccCcceeeecCHH
Q 040260 246 FHWNPHVFKALSPY 259 (445)
Q Consensus 246 ~~~~P~Vl~AlnP~ 259 (445)
++|||+||+|.||.
T Consensus 37 IKYDP~vLQ~V~p~ 50 (170)
T d1tyja1 37 IKYNTTYLQPWDTI 50 (170)
T ss_dssp EECCTTTEEEEETT
T ss_pred eeeChHHeecccCC
Confidence 47999999999996
No 4
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Probab=15.94 E-value=19 Score=30.99 Aligned_cols=13 Identities=15% Similarity=0.672 Sum_probs=11.8
Q ss_pred cccCcceeeecCH
Q 040260 246 FHWNPHVFKALSP 258 (445)
Q Consensus 246 ~~~~P~Vl~AlnP 258 (445)
++|||+||+|.||
T Consensus 39 IKYDP~vLQ~V~~ 51 (171)
T d1zv9a1 39 MKYDPAVLQPVTS 51 (171)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChHHeeccCC
Confidence 4799999999998
No 5
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.30 E-value=30 Score=24.52 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=25.7
Q ss_pred HHHHhhcchhhhhhcCCCccccccCcceeeccCcchHHHHHHHH
Q 040260 312 SLILAYMGQAAYLSKHHNIESDYRIGFYVSVPEKLRWPVLAIAI 355 (445)
Q Consensus 312 ~LlL~Y~GQgA~Ll~~p~~~~~~~npFy~~~P~~~~~P~~vlAt 355 (445)
++++--++=..|+.+++ + +|.-|.++|+.++|-.+-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~---~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERG---A--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTT---S--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC---C--CCccccccchhhhhheeeeec
Confidence 44444456666777775 2 233489999999997765543
No 6
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=7.54 E-value=1.2e+02 Score=22.77 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=31.9
Q ss_pred hhchhhHHHHHHHhCCCcceeEEecCCcccCceeechhHH
Q 040260 366 ITGTFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINW 405 (445)
Q Consensus 366 Isg~FSi~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw 405 (445)
|+-..|+++++.+.+.-+++++.|..++..--+|-.++..
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~ 56 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDA 56 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHH
Confidence 5667889999999999889999999987776666665543
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.12 E-value=20 Score=23.69 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=15.3
Q ss_pred eeechhHHHHHHHHHhheee
Q 040260 398 IYIPEINWTLMLLCLAITVG 417 (445)
Q Consensus 398 IYIP~vNw~Lmv~~i~vv~~ 417 (445)
|.||.+-|++-..+..+...
T Consensus 13 I~iPvv~wl~p~vvMglLFi 32 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhe
Confidence 78999999988877665443
No 8
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=5.87 E-value=75 Score=23.25 Aligned_cols=9 Identities=44% Similarity=0.353 Sum_probs=5.3
Q ss_pred HHHhccccc
Q 040260 99 SLLCRHARI 107 (445)
Q Consensus 99 sLi~r~~~~ 107 (445)
|+++|+.|+
T Consensus 25 S~lQR~l~I 33 (69)
T d2j5pa1 25 SGVQRQFRI 33 (69)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 556666555
No 9
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=5.82 E-value=65 Score=23.25 Aligned_cols=13 Identities=54% Similarity=0.992 Sum_probs=11.7
Q ss_pred CCCCchHHHHHHH
Q 040260 88 DNGEGGTFALYSL 100 (445)
Q Consensus 88 n~GEGG~fALysL 100 (445)
.|||||-+.|..|
T Consensus 39 engeggeltltql 51 (71)
T d2bnma1 39 ENGEGGELTLTQL 51 (71)
T ss_dssp HTTTCTTCBHHHH
T ss_pred hcCCCceeeHHHH
Confidence 7999999999876
No 10
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}
Probab=5.42 E-value=2.2e+02 Score=21.46 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.4
Q ss_pred hhchhhHHHHHHHhCCCcceeEEecCCcccCceeechhHHH
Q 040260 366 ITGTFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWT 406 (445)
Q Consensus 366 Isg~FSi~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~ 406 (445)
|+-..|+++++.+.+.-.++++.|..++..--+|-.+++.+
T Consensus 20 ItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l 60 (141)
T d1tvca2 20 LAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSL 60 (141)
T ss_dssp THHHHHHHHHHHHHTCCSCEEEEEECSSSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEeecccchhhhhHHHHHHH
Confidence 44566778888888887788989988877766777776543
Done!